Multiple sequence alignment - TraesCS5B01G099500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G099500 chr5B 100.000 3336 0 0 1 3336 132540868 132537533 0.000000e+00 6161.0
1 TraesCS5B01G099500 chr5B 78.088 251 42 9 3069 3310 688967080 688967326 2.960000e-31 147.0
2 TraesCS5B01G099500 chr5B 78.899 218 28 12 132 344 387901431 387901227 8.290000e-27 132.0
3 TraesCS5B01G099500 chr5B 100.000 50 0 0 3628 3677 132537241 132537192 3.910000e-15 93.5
4 TraesCS5B01G099500 chr5B 93.478 46 3 0 469 514 132540360 132540315 6.590000e-08 69.4
5 TraesCS5B01G099500 chr5B 93.478 46 3 0 509 554 132540400 132540355 6.590000e-08 69.4
6 TraesCS5B01G099500 chr5D 94.361 1472 71 9 1535 2998 119611737 119610270 0.000000e+00 2248.0
7 TraesCS5B01G099500 chr5D 92.095 1050 36 13 469 1475 119612785 119611740 0.000000e+00 1435.0
8 TraesCS5B01G099500 chr5D 93.659 410 20 6 4 410 119615034 119614628 3.140000e-170 608.0
9 TraesCS5B01G099500 chr5A 94.469 1356 64 3 1535 2881 129719831 129718478 0.000000e+00 2078.0
10 TraesCS5B01G099500 chr5A 90.316 1012 57 15 471 1475 129720811 129719834 0.000000e+00 1288.0
11 TraesCS5B01G099500 chr5A 93.852 244 9 6 4 245 129724001 129723762 2.700000e-96 363.0
12 TraesCS5B01G099500 chr5A 88.189 254 13 4 235 473 129723704 129723453 1.670000e-73 287.0
13 TraesCS5B01G099500 chr5A 89.423 208 15 6 2867 3073 129718459 129718258 4.710000e-64 255.0
14 TraesCS5B01G099500 chr5A 80.808 297 37 15 52 343 66819675 66819394 8.000000e-52 215.0
15 TraesCS5B01G099500 chr5A 93.478 46 3 0 469 514 129720773 129720728 6.590000e-08 69.4
16 TraesCS5B01G099500 chr7B 86.742 264 33 2 3073 3335 134212027 134211765 3.590000e-75 292.0
17 TraesCS5B01G099500 chr7B 86.709 158 20 1 3096 3252 525999777 525999934 1.360000e-39 174.0
18 TraesCS5B01G099500 chr7B 83.237 173 27 2 3075 3246 60693150 60692979 1.370000e-34 158.0
19 TraesCS5B01G099500 chr3A 78.551 345 53 16 5 343 25404267 25404596 1.340000e-49 207.0
20 TraesCS5B01G099500 chr1D 81.852 270 25 16 3079 3334 109810646 109810905 4.810000e-49 206.0
21 TraesCS5B01G099500 chr3B 80.797 276 37 10 3072 3332 735929205 735928931 6.230000e-48 202.0
22 TraesCS5B01G099500 chr2B 76.123 423 61 23 230 629 188818181 188817776 6.270000e-43 185.0
23 TraesCS5B01G099500 chrUn 79.283 251 40 8 3069 3310 335286698 335286945 8.170000e-37 165.0
24 TraesCS5B01G099500 chrUn 79.283 251 40 8 3069 3310 335289402 335289649 8.170000e-37 165.0
25 TraesCS5B01G099500 chrUn 79.283 251 40 8 3069 3310 467682513 467682760 8.170000e-37 165.0
26 TraesCS5B01G099500 chr2A 83.529 170 26 2 3094 3262 372857928 372857760 1.370000e-34 158.0
27 TraesCS5B01G099500 chr6D 88.462 52 6 0 513 564 55078171 55078120 3.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G099500 chr5B 132537192 132540868 3676 True 1598.325000 6161 96.739000 1 3677 4 chr5B.!!$R2 3676
1 TraesCS5B01G099500 chr5D 119610270 119615034 4764 True 1430.333333 2248 93.371667 4 2998 3 chr5D.!!$R1 2994
2 TraesCS5B01G099500 chr5A 129718258 129724001 5743 True 723.400000 2078 91.621167 4 3073 6 chr5A.!!$R2 3069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
845 3670 1.001376 GAACCCGTCTCTACCCCCT 59.999 63.158 0.0 0.0 0.00 4.79 F
1512 4360 0.250038 CATCCGATGGTTGCCTCGAT 60.250 55.000 0.0 0.0 37.05 3.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 5022 0.107993 CTCGCTGCTGGAATCCTGAA 60.108 55.0 10.52 0.0 0.0 3.02 R
3141 6039 0.040067 GTCGGCAGGCAGACAAAAAG 60.040 55.0 17.60 0.0 40.1 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.729965 ATGGCTTCAGCTCGCTCCG 62.730 63.158 0.00 0.00 41.70 4.63
200 204 4.481368 AATTGTGCTAACCAGGACGATA 57.519 40.909 0.00 0.00 44.18 2.92
204 208 2.102588 GTGCTAACCAGGACGATACCAT 59.897 50.000 0.00 0.00 33.09 3.55
206 210 3.962063 TGCTAACCAGGACGATACCATAA 59.038 43.478 0.00 0.00 0.00 1.90
610 3420 3.533146 TGGTGGGTCCTTAATAGTTGGA 58.467 45.455 0.00 0.00 37.07 3.53
649 3459 6.064060 TGCCTTAATGTAATTGCTATGCTCT 58.936 36.000 0.00 0.00 36.99 4.09
697 3507 3.757270 TCCCACTCCGAGAGATAAGATC 58.243 50.000 1.33 0.00 33.32 2.75
839 3664 1.006758 AGACCATGGAACCCGTCTCTA 59.993 52.381 21.47 0.00 29.62 2.43
845 3670 1.001376 GAACCCGTCTCTACCCCCT 59.999 63.158 0.00 0.00 0.00 4.79
904 3731 7.414098 CGAACCGATAGTGGAAGATTTCAAAAT 60.414 37.037 0.00 0.00 0.00 1.82
995 3822 4.080863 TCCTCTTTCCTGCCATTTCTACTC 60.081 45.833 0.00 0.00 0.00 2.59
996 3823 4.195416 CTCTTTCCTGCCATTTCTACTCC 58.805 47.826 0.00 0.00 0.00 3.85
997 3824 3.054361 TCTTTCCTGCCATTTCTACTCCC 60.054 47.826 0.00 0.00 0.00 4.30
998 3825 1.965414 TCCTGCCATTTCTACTCCCA 58.035 50.000 0.00 0.00 0.00 4.37
999 3826 1.839994 TCCTGCCATTTCTACTCCCAG 59.160 52.381 0.00 0.00 0.00 4.45
1001 3828 2.441001 CCTGCCATTTCTACTCCCAGAT 59.559 50.000 0.00 0.00 0.00 2.90
1002 3829 3.474600 CTGCCATTTCTACTCCCAGATG 58.525 50.000 0.00 0.00 0.00 2.90
1101 3943 2.264794 GTCCACTACCACCTGCCG 59.735 66.667 0.00 0.00 0.00 5.69
1103 3948 4.778143 CCACTACCACCTGCCGCC 62.778 72.222 0.00 0.00 0.00 6.13
1129 3974 3.760035 TCTCGCTTCTCCGGTGGC 61.760 66.667 0.00 0.00 0.00 5.01
1157 4002 3.062500 CTCGCCTCTCGCTGCTCTT 62.063 63.158 0.00 0.00 38.27 2.85
1158 4003 2.581953 CGCCTCTCGCTGCTCTTC 60.582 66.667 0.00 0.00 34.21 2.87
1159 4004 2.891882 GCCTCTCGCTGCTCTTCT 59.108 61.111 0.00 0.00 0.00 2.85
1187 4032 0.539051 CTGATTCCTCCCGTGCTCTT 59.461 55.000 0.00 0.00 0.00 2.85
1224 4069 1.295792 TTGTGGTGTCGTTTCTCTGC 58.704 50.000 0.00 0.00 0.00 4.26
1239 4084 2.232452 TCTCTGCTTCACCTTGCTCTAC 59.768 50.000 0.00 0.00 0.00 2.59
1278 4123 3.133542 TGAGCAAGGATGACAATCTCGAT 59.866 43.478 0.00 0.00 32.95 3.59
1364 4212 3.443925 GGCGAAAGGGGAAGCTGC 61.444 66.667 0.00 0.00 0.00 5.25
1373 4221 2.437359 GGAAGCTGCGAGGCATGT 60.437 61.111 0.00 0.00 38.13 3.21
1443 4291 4.642885 AGGAGACTCGAGATAAAAGAGGTG 59.357 45.833 21.68 0.00 32.90 4.00
1451 4299 1.398390 GATAAAAGAGGTGCGTGCTGG 59.602 52.381 0.00 0.00 0.00 4.85
1471 4319 5.396213 GCTGGTGGATTCTCTCAAGTATCTT 60.396 44.000 0.00 0.00 31.77 2.40
1475 4323 6.352222 GGTGGATTCTCTCAAGTATCTTGGAA 60.352 42.308 9.18 6.07 31.77 3.53
1476 4324 6.536941 GTGGATTCTCTCAAGTATCTTGGAAC 59.463 42.308 9.18 2.50 31.77 3.62
1477 4325 6.213397 TGGATTCTCTCAAGTATCTTGGAACA 59.787 38.462 9.18 0.45 31.77 3.18
1478 4326 7.092712 TGGATTCTCTCAAGTATCTTGGAACAT 60.093 37.037 9.18 2.42 39.30 2.71
1479 4327 8.424918 GGATTCTCTCAAGTATCTTGGAACATA 58.575 37.037 9.18 0.00 39.30 2.29
1480 4328 9.995003 GATTCTCTCAAGTATCTTGGAACATAT 57.005 33.333 9.18 0.00 39.30 1.78
1481 4329 9.995003 ATTCTCTCAAGTATCTTGGAACATATC 57.005 33.333 9.18 0.00 39.30 1.63
1482 4330 8.539117 TCTCTCAAGTATCTTGGAACATATCA 57.461 34.615 9.18 0.00 39.30 2.15
1483 4331 8.981659 TCTCTCAAGTATCTTGGAACATATCAA 58.018 33.333 9.18 0.00 39.30 2.57
1484 4332 9.605275 CTCTCAAGTATCTTGGAACATATCAAA 57.395 33.333 9.18 0.00 39.30 2.69
1485 4333 9.605275 TCTCAAGTATCTTGGAACATATCAAAG 57.395 33.333 9.18 0.00 40.04 2.77
1491 4339 5.759059 TCTTGGAACATATCAAAGATGGCT 58.241 37.500 0.00 0.00 42.15 4.75
1492 4340 6.189859 TCTTGGAACATATCAAAGATGGCTT 58.810 36.000 0.00 0.00 42.15 4.35
1493 4341 6.319658 TCTTGGAACATATCAAAGATGGCTTC 59.680 38.462 0.00 0.00 42.15 3.86
1494 4342 5.508567 TGGAACATATCAAAGATGGCTTCA 58.491 37.500 3.03 0.00 31.82 3.02
1495 4343 6.131264 TGGAACATATCAAAGATGGCTTCAT 58.869 36.000 3.03 0.00 31.82 2.57
1496 4344 6.263842 TGGAACATATCAAAGATGGCTTCATC 59.736 38.462 3.03 0.00 45.70 2.92
1497 4345 6.294397 GGAACATATCAAAGATGGCTTCATCC 60.294 42.308 3.03 0.00 46.33 3.51
1498 4346 4.758674 ACATATCAAAGATGGCTTCATCCG 59.241 41.667 3.03 0.00 46.33 4.18
1499 4347 3.565764 ATCAAAGATGGCTTCATCCGA 57.434 42.857 3.03 0.00 46.33 4.55
1500 4348 3.565764 TCAAAGATGGCTTCATCCGAT 57.434 42.857 3.03 0.00 46.33 4.18
1501 4349 3.208594 TCAAAGATGGCTTCATCCGATG 58.791 45.455 1.55 1.55 46.33 3.84
1502 4350 2.267174 AAGATGGCTTCATCCGATGG 57.733 50.000 8.54 0.00 46.33 3.51
1503 4351 1.135094 AGATGGCTTCATCCGATGGT 58.865 50.000 8.54 0.00 46.33 3.55
1504 4352 1.492176 AGATGGCTTCATCCGATGGTT 59.508 47.619 8.54 0.00 46.33 3.67
1505 4353 1.605710 GATGGCTTCATCCGATGGTTG 59.394 52.381 8.54 1.09 40.95 3.77
1506 4354 1.031571 TGGCTTCATCCGATGGTTGC 61.032 55.000 8.54 9.76 0.00 4.17
1507 4355 1.728490 GGCTTCATCCGATGGTTGCC 61.728 60.000 17.76 17.76 34.94 4.52
1508 4356 0.749454 GCTTCATCCGATGGTTGCCT 60.749 55.000 8.54 0.00 0.00 4.75
1509 4357 1.303309 CTTCATCCGATGGTTGCCTC 58.697 55.000 8.54 0.00 0.00 4.70
1510 4358 0.461870 TTCATCCGATGGTTGCCTCG 60.462 55.000 8.54 0.00 34.73 4.63
1511 4359 1.143838 CATCCGATGGTTGCCTCGA 59.856 57.895 0.00 0.00 37.05 4.04
1512 4360 0.250038 CATCCGATGGTTGCCTCGAT 60.250 55.000 0.00 0.00 37.05 3.59
1513 4361 0.469917 ATCCGATGGTTGCCTCGATT 59.530 50.000 8.01 0.00 37.05 3.34
1514 4362 1.116308 TCCGATGGTTGCCTCGATTA 58.884 50.000 8.01 0.00 37.05 1.75
1515 4363 1.202486 TCCGATGGTTGCCTCGATTAC 60.202 52.381 8.01 0.00 37.05 1.89
1516 4364 0.852777 CGATGGTTGCCTCGATTACG 59.147 55.000 0.00 0.00 37.05 3.18
1517 4365 1.535226 CGATGGTTGCCTCGATTACGA 60.535 52.381 0.00 0.00 46.56 3.43
1525 4373 2.802792 TCGATTACGAGGTGCCGG 59.197 61.111 0.00 0.00 43.81 6.13
1526 4374 2.048023 TCGATTACGAGGTGCCGGT 61.048 57.895 1.90 0.00 43.81 5.28
1527 4375 1.876714 CGATTACGAGGTGCCGGTG 60.877 63.158 1.90 0.00 42.66 4.94
1528 4376 2.125269 ATTACGAGGTGCCGGTGC 60.125 61.111 1.90 0.00 38.26 5.01
1529 4377 4.728102 TTACGAGGTGCCGGTGCG 62.728 66.667 1.90 2.53 41.78 5.34
1552 4400 1.997606 CCAACGACGATAAACTGGTCC 59.002 52.381 0.00 0.00 29.33 4.46
1554 4402 2.649331 ACGACGATAAACTGGTCCAG 57.351 50.000 17.88 17.88 37.52 3.86
1569 4417 5.163258 ACTGGTCCAGGATGTGAATATCTTC 60.163 44.000 23.06 0.00 35.51 2.87
1581 4429 4.026145 GTGAATATCTTCGAGACAAGCAGC 60.026 45.833 0.00 0.00 33.86 5.25
1588 4439 1.742880 GAGACAAGCAGCGCCATGA 60.743 57.895 2.29 0.00 0.00 3.07
1595 4446 0.679002 AGCAGCGCCATGACTGATTT 60.679 50.000 2.29 0.00 35.90 2.17
1673 4524 2.221169 TGAACACAACATCAGAGTGGC 58.779 47.619 0.00 0.00 37.58 5.01
1690 4541 1.600636 GCCAGCAGTAGCACACCAA 60.601 57.895 0.00 0.00 45.49 3.67
1829 4680 4.403453 GTTGTGCCATCAAATACTTCGTC 58.597 43.478 0.00 0.00 0.00 4.20
1866 4717 2.535984 CAGCGACGAATATGGTGAAGAC 59.464 50.000 0.00 0.00 33.11 3.01
1914 4765 6.925610 TCAGCTTGTGGTACATATGAAATC 57.074 37.500 10.38 0.00 44.52 2.17
2006 4857 2.350522 CGGACAGTTTGAATCCTCAGG 58.649 52.381 0.00 0.00 31.69 3.86
2010 4861 3.999663 GACAGTTTGAATCCTCAGGTGAG 59.000 47.826 0.00 0.00 41.71 3.51
2050 4901 7.944729 AAGGATGCAAATAGTGTACTTGAAT 57.055 32.000 0.00 0.00 0.00 2.57
2051 4902 7.559590 AGGATGCAAATAGTGTACTTGAATC 57.440 36.000 0.00 4.78 35.26 2.52
2090 4941 2.668457 CGACTCTGGAAGATTTTCGTGG 59.332 50.000 0.00 0.00 45.62 4.94
2214 5065 2.421424 GGAAGCATCAATGGTGTCACTC 59.579 50.000 2.35 0.00 38.70 3.51
2233 5084 6.650807 GTCACTCCATTCTGTTTGTGAAGATA 59.349 38.462 0.00 0.00 36.42 1.98
2240 5091 4.973168 TCTGTTTGTGAAGATACAGCCTT 58.027 39.130 0.00 0.00 38.26 4.35
2244 5095 5.221722 TGTTTGTGAAGATACAGCCTTCTCT 60.222 40.000 0.00 0.00 40.37 3.10
2249 5100 4.713814 TGAAGATACAGCCTTCTCTGATGT 59.286 41.667 0.00 0.00 40.37 3.06
2251 5102 5.275067 AGATACAGCCTTCTCTGATGTTC 57.725 43.478 0.00 0.00 37.51 3.18
2257 5108 2.092753 GCCTTCTCTGATGTTCCATCCA 60.093 50.000 2.02 0.00 0.00 3.41
2268 5119 7.399765 TCTGATGTTCCATCCAACCATTATTTT 59.600 33.333 2.02 0.00 0.00 1.82
2269 5120 7.915930 TGATGTTCCATCCAACCATTATTTTT 58.084 30.769 2.02 0.00 0.00 1.94
2270 5121 7.823310 TGATGTTCCATCCAACCATTATTTTTG 59.177 33.333 2.02 0.00 0.00 2.44
2378 5235 1.483004 TGAGAACCGTCAGACACCAAA 59.517 47.619 0.41 0.00 0.00 3.28
2401 5258 3.359950 AGAGAGGCATTTGATGGTTTCC 58.640 45.455 0.00 0.00 0.00 3.13
2461 5318 2.699846 AGTCTGGGAGATGAAGCTGATC 59.300 50.000 0.00 0.00 0.00 2.92
2540 5397 8.420374 TTTCTTCATTATAAGTAAGCTGTCGG 57.580 34.615 0.00 0.00 0.00 4.79
2667 5524 0.961019 TTGATGTGTTTGCTGGCTCC 59.039 50.000 0.00 0.00 0.00 4.70
2696 5553 8.632679 GGATTAAATGAAAGGTGATGCTATTCA 58.367 33.333 0.00 0.00 34.80 2.57
2965 5858 3.387050 ACAAACATATACTCCCCCGTCTC 59.613 47.826 0.00 0.00 0.00 3.36
2975 5870 3.270877 CTCCCCCGTCTCAAAATAAGTG 58.729 50.000 0.00 0.00 0.00 3.16
3003 5901 8.758633 TGTACTAAATCAAAGACACTTAGAGC 57.241 34.615 0.00 0.00 0.00 4.09
3005 5903 9.204570 GTACTAAATCAAAGACACTTAGAGCAA 57.795 33.333 0.00 0.00 0.00 3.91
3007 5905 6.942532 AAATCAAAGACACTTAGAGCAACA 57.057 33.333 0.00 0.00 0.00 3.33
3008 5906 6.942532 AATCAAAGACACTTAGAGCAACAA 57.057 33.333 0.00 0.00 0.00 2.83
3013 5911 4.513442 AGACACTTAGAGCAACAACAACA 58.487 39.130 0.00 0.00 0.00 3.33
3015 5913 3.063452 ACACTTAGAGCAACAACAACACG 59.937 43.478 0.00 0.00 0.00 4.49
3017 5915 1.657822 TAGAGCAACAACAACACGCA 58.342 45.000 0.00 0.00 0.00 5.24
3028 5926 0.110238 CAACACGCAGACCCATTTCG 60.110 55.000 0.00 0.00 0.00 3.46
3032 5930 0.319083 ACGCAGACCCATTTCGTACA 59.681 50.000 0.00 0.00 0.00 2.90
3033 5931 0.719465 CGCAGACCCATTTCGTACAC 59.281 55.000 0.00 0.00 0.00 2.90
3034 5932 1.803334 GCAGACCCATTTCGTACACA 58.197 50.000 0.00 0.00 0.00 3.72
3035 5933 1.463444 GCAGACCCATTTCGTACACAC 59.537 52.381 0.00 0.00 0.00 3.82
3036 5934 2.761559 CAGACCCATTTCGTACACACA 58.238 47.619 0.00 0.00 0.00 3.72
3038 5936 3.125146 CAGACCCATTTCGTACACACATG 59.875 47.826 0.00 0.00 0.00 3.21
3039 5937 3.071479 GACCCATTTCGTACACACATGT 58.929 45.455 0.00 0.00 43.30 3.21
3040 5938 3.071479 ACCCATTTCGTACACACATGTC 58.929 45.455 0.00 0.00 40.48 3.06
3041 5939 2.418628 CCCATTTCGTACACACATGTCC 59.581 50.000 0.00 0.00 40.48 4.02
3042 5940 2.093625 CCATTTCGTACACACATGTCCG 59.906 50.000 0.00 0.00 39.36 4.79
3043 5941 2.512485 TTTCGTACACACATGTCCGT 57.488 45.000 0.00 0.00 39.08 4.69
3044 5942 2.512485 TTCGTACACACATGTCCGTT 57.488 45.000 0.00 0.00 39.08 4.44
3045 5943 2.512485 TCGTACACACATGTCCGTTT 57.488 45.000 0.00 0.00 39.08 3.60
3046 5944 2.128821 TCGTACACACATGTCCGTTTG 58.871 47.619 0.00 0.00 39.08 2.93
3047 5945 1.193650 CGTACACACATGTCCGTTTGG 59.806 52.381 0.00 0.00 40.48 3.28
3048 5946 1.533731 GTACACACATGTCCGTTTGGG 59.466 52.381 0.00 0.00 40.48 4.12
3049 5947 0.106918 ACACACATGTCCGTTTGGGT 60.107 50.000 0.00 0.00 31.55 4.51
3050 5948 0.591170 CACACATGTCCGTTTGGGTC 59.409 55.000 0.00 0.00 37.00 4.46
3051 5949 0.181587 ACACATGTCCGTTTGGGTCA 59.818 50.000 0.00 0.00 38.23 4.02
3056 5954 3.386402 ACATGTCCGTTTGGGTCAAAAAT 59.614 39.130 0.00 0.00 37.39 1.82
3067 5965 4.764172 TGGGTCAAAAATGGACACAAAAG 58.236 39.130 0.00 0.00 45.13 2.27
3073 5971 1.686355 AATGGACACAAAAGTCGGCA 58.314 45.000 0.00 0.00 39.42 5.69
3074 5972 1.909700 ATGGACACAAAAGTCGGCAT 58.090 45.000 0.00 0.00 39.42 4.40
3075 5973 0.950836 TGGACACAAAAGTCGGCATG 59.049 50.000 0.00 0.00 39.42 4.06
3076 5974 0.951558 GGACACAAAAGTCGGCATGT 59.048 50.000 0.00 0.00 39.42 3.21
3077 5975 1.069227 GGACACAAAAGTCGGCATGTC 60.069 52.381 0.00 0.00 39.42 3.06
3078 5976 0.951558 ACACAAAAGTCGGCATGTCC 59.048 50.000 0.00 0.00 0.00 4.02
3087 5985 3.274067 GGCATGTCCGTTTGGGTC 58.726 61.111 0.00 0.00 37.00 4.46
3088 5986 1.602323 GGCATGTCCGTTTGGGTCA 60.602 57.895 0.00 0.00 38.23 4.02
3089 5987 1.175983 GGCATGTCCGTTTGGGTCAA 61.176 55.000 0.00 0.00 37.39 3.18
3090 5988 0.671251 GCATGTCCGTTTGGGTCAAA 59.329 50.000 0.00 0.00 37.39 2.69
3091 5989 1.067821 GCATGTCCGTTTGGGTCAAAA 59.932 47.619 0.00 0.00 37.39 2.44
3092 5990 2.482142 GCATGTCCGTTTGGGTCAAAAA 60.482 45.455 0.00 0.00 37.39 1.94
3093 5991 2.943449 TGTCCGTTTGGGTCAAAAAC 57.057 45.000 0.00 0.00 35.03 2.43
3098 5996 2.943449 GTTTGGGTCAAAAACGGACA 57.057 45.000 0.00 0.00 35.03 4.02
3099 5997 2.532235 GTTTGGGTCAAAAACGGACAC 58.468 47.619 0.00 0.00 39.15 3.67
3100 5998 1.835494 TTGGGTCAAAAACGGACACA 58.165 45.000 0.00 0.00 46.34 3.72
3101 5999 1.835494 TGGGTCAAAAACGGACACAA 58.165 45.000 0.00 0.00 45.13 3.33
3102 6000 2.168496 TGGGTCAAAAACGGACACAAA 58.832 42.857 0.00 0.00 45.13 2.83
3103 6001 2.561419 TGGGTCAAAAACGGACACAAAA 59.439 40.909 0.00 0.00 45.13 2.44
3104 6002 3.183754 GGGTCAAAAACGGACACAAAAG 58.816 45.455 0.00 0.00 38.56 2.27
3105 6003 3.367600 GGGTCAAAAACGGACACAAAAGT 60.368 43.478 0.00 0.00 38.56 2.66
3106 6004 4.239304 GGTCAAAAACGGACACAAAAGTT 58.761 39.130 0.00 0.00 37.00 2.66
3107 6005 4.090786 GGTCAAAAACGGACACAAAAGTTG 59.909 41.667 0.00 0.00 37.00 3.16
3108 6006 4.090786 GTCAAAAACGGACACAAAAGTTGG 59.909 41.667 0.00 0.00 35.36 3.77
3109 6007 2.287393 AAACGGACACAAAAGTTGGC 57.713 45.000 0.00 0.00 34.12 4.52
3110 6008 0.458260 AACGGACACAAAAGTTGGCC 59.542 50.000 0.00 0.00 34.12 5.36
3111 6009 1.362355 CGGACACAAAAGTTGGCCC 59.638 57.895 0.00 0.00 34.12 5.80
3112 6010 1.388065 CGGACACAAAAGTTGGCCCA 61.388 55.000 0.00 0.00 34.12 5.36
3113 6011 0.827368 GGACACAAAAGTTGGCCCAA 59.173 50.000 0.00 0.00 34.12 4.12
3114 6012 1.202521 GGACACAAAAGTTGGCCCAAG 60.203 52.381 0.00 0.00 34.12 3.61
3115 6013 1.480545 GACACAAAAGTTGGCCCAAGT 59.519 47.619 0.00 0.00 34.12 3.16
3116 6014 1.206849 ACACAAAAGTTGGCCCAAGTG 59.793 47.619 4.15 7.87 34.12 3.16
3117 6015 0.177836 ACAAAAGTTGGCCCAAGTGC 59.822 50.000 4.15 0.00 34.12 4.40
3125 6023 4.966787 GCCCAAGTGCCGACCCAA 62.967 66.667 0.00 0.00 0.00 4.12
3126 6024 2.203422 CCCAAGTGCCGACCCAAA 60.203 61.111 0.00 0.00 0.00 3.28
3127 6025 2.561037 CCCAAGTGCCGACCCAAAC 61.561 63.158 0.00 0.00 0.00 2.93
3128 6026 2.637025 CAAGTGCCGACCCAAACG 59.363 61.111 0.00 0.00 0.00 3.60
3135 6033 3.708734 CGACCCAAACGGACGTGC 61.709 66.667 0.00 0.00 43.65 5.34
3136 6034 2.280592 GACCCAAACGGACGTGCT 60.281 61.111 5.27 0.00 34.64 4.40
3137 6035 1.890510 GACCCAAACGGACGTGCTT 60.891 57.895 5.27 0.00 34.64 3.91
3138 6036 1.838568 GACCCAAACGGACGTGCTTC 61.839 60.000 5.27 0.00 34.64 3.86
3139 6037 2.613506 CCCAAACGGACGTGCTTCC 61.614 63.158 5.27 0.00 0.00 3.46
3145 6043 3.340789 GGACGTGCTTCCGCTTTT 58.659 55.556 0.00 0.00 36.97 2.27
3146 6044 1.652563 GGACGTGCTTCCGCTTTTT 59.347 52.632 0.00 0.00 36.97 1.94
3147 6045 0.660300 GGACGTGCTTCCGCTTTTTG 60.660 55.000 0.00 0.00 36.97 2.44
3148 6046 0.028902 GACGTGCTTCCGCTTTTTGT 59.971 50.000 0.00 0.00 36.97 2.83
3149 6047 0.028902 ACGTGCTTCCGCTTTTTGTC 59.971 50.000 0.00 0.00 36.97 3.18
3150 6048 0.307760 CGTGCTTCCGCTTTTTGTCT 59.692 50.000 0.00 0.00 36.97 3.41
3151 6049 1.758783 GTGCTTCCGCTTTTTGTCTG 58.241 50.000 0.00 0.00 36.97 3.51
3152 6050 0.030638 TGCTTCCGCTTTTTGTCTGC 59.969 50.000 0.00 0.00 36.97 4.26
3153 6051 0.664466 GCTTCCGCTTTTTGTCTGCC 60.664 55.000 0.00 0.00 0.00 4.85
3154 6052 0.954452 CTTCCGCTTTTTGTCTGCCT 59.046 50.000 0.00 0.00 0.00 4.75
3155 6053 0.667993 TTCCGCTTTTTGTCTGCCTG 59.332 50.000 0.00 0.00 0.00 4.85
3156 6054 1.372128 CCGCTTTTTGTCTGCCTGC 60.372 57.895 0.00 0.00 0.00 4.85
3157 6055 1.372128 CGCTTTTTGTCTGCCTGCC 60.372 57.895 0.00 0.00 0.00 4.85
3158 6056 1.372128 GCTTTTTGTCTGCCTGCCG 60.372 57.895 0.00 0.00 0.00 5.69
3159 6057 1.795170 GCTTTTTGTCTGCCTGCCGA 61.795 55.000 0.00 0.00 0.00 5.54
3160 6058 0.040067 CTTTTTGTCTGCCTGCCGAC 60.040 55.000 6.73 6.73 0.00 4.79
3161 6059 1.452145 TTTTTGTCTGCCTGCCGACC 61.452 55.000 10.55 0.00 0.00 4.79
3162 6060 3.842925 TTTGTCTGCCTGCCGACCC 62.843 63.158 10.55 0.00 0.00 4.46
3164 6062 4.101448 GTCTGCCTGCCGACCCAT 62.101 66.667 2.65 0.00 0.00 4.00
3165 6063 3.329889 TCTGCCTGCCGACCCATT 61.330 61.111 0.00 0.00 0.00 3.16
3166 6064 2.825836 CTGCCTGCCGACCCATTC 60.826 66.667 0.00 0.00 0.00 2.67
3167 6065 4.424711 TGCCTGCCGACCCATTCC 62.425 66.667 0.00 0.00 0.00 3.01
3168 6066 4.115199 GCCTGCCGACCCATTCCT 62.115 66.667 0.00 0.00 0.00 3.36
3169 6067 2.124570 CCTGCCGACCCATTCCTG 60.125 66.667 0.00 0.00 0.00 3.86
3170 6068 2.124570 CTGCCGACCCATTCCTGG 60.125 66.667 0.00 0.00 42.73 4.45
3171 6069 4.424711 TGCCGACCCATTCCTGGC 62.425 66.667 0.00 0.00 45.91 4.85
3173 6071 4.506255 CCGACCCATTCCTGGCCC 62.506 72.222 0.00 0.00 41.64 5.80
3174 6072 3.727258 CGACCCATTCCTGGCCCA 61.727 66.667 0.00 0.00 41.64 5.36
3175 6073 2.770130 GACCCATTCCTGGCCCAA 59.230 61.111 0.00 0.00 41.64 4.12
3176 6074 1.078347 GACCCATTCCTGGCCCAAA 59.922 57.895 0.00 0.00 41.64 3.28
3177 6075 0.325577 GACCCATTCCTGGCCCAAAT 60.326 55.000 0.00 0.00 41.64 2.32
3178 6076 0.118952 ACCCATTCCTGGCCCAAATT 59.881 50.000 0.00 0.00 41.64 1.82
3179 6077 1.288188 CCCATTCCTGGCCCAAATTT 58.712 50.000 0.00 0.00 41.64 1.82
3180 6078 1.065272 CCCATTCCTGGCCCAAATTTG 60.065 52.381 11.40 11.40 41.64 2.32
3181 6079 1.907936 CCATTCCTGGCCCAAATTTGA 59.092 47.619 19.86 0.00 35.23 2.69
3182 6080 2.093341 CCATTCCTGGCCCAAATTTGAG 60.093 50.000 19.86 7.62 35.23 3.02
3183 6081 0.975887 TTCCTGGCCCAAATTTGAGC 59.024 50.000 19.86 17.73 0.00 4.26
3188 6086 2.267045 GCCCAAATTTGAGCCTCGT 58.733 52.632 19.86 0.00 0.00 4.18
3189 6087 0.603065 GCCCAAATTTGAGCCTCGTT 59.397 50.000 19.86 0.00 0.00 3.85
3190 6088 1.000843 GCCCAAATTTGAGCCTCGTTT 59.999 47.619 19.86 0.00 0.00 3.60
3191 6089 2.676076 CCCAAATTTGAGCCTCGTTTG 58.324 47.619 19.86 8.99 0.00 2.93
3192 6090 2.061028 CCAAATTTGAGCCTCGTTTGC 58.939 47.619 19.86 0.00 0.00 3.68
3193 6091 2.545532 CCAAATTTGAGCCTCGTTTGCA 60.546 45.455 19.86 0.00 0.00 4.08
3194 6092 3.319755 CAAATTTGAGCCTCGTTTGCAT 58.680 40.909 13.08 0.00 0.00 3.96
3195 6093 2.927553 ATTTGAGCCTCGTTTGCATC 57.072 45.000 0.00 0.00 0.00 3.91
3196 6094 0.516877 TTTGAGCCTCGTTTGCATCG 59.483 50.000 5.62 5.62 0.00 3.84
3197 6095 0.320334 TTGAGCCTCGTTTGCATCGA 60.320 50.000 12.56 12.56 35.96 3.59
3198 6096 1.014044 TGAGCCTCGTTTGCATCGAC 61.014 55.000 9.81 3.28 33.71 4.20
3199 6097 2.014093 GAGCCTCGTTTGCATCGACG 62.014 60.000 9.81 10.13 40.43 5.12
3200 6098 2.395690 CCTCGTTTGCATCGACGC 59.604 61.111 0.00 0.00 39.03 5.19
3201 6099 2.018670 CTCGTTTGCATCGACGCG 59.981 61.111 3.53 3.53 39.03 6.01
3202 6100 3.406060 CTCGTTTGCATCGACGCGG 62.406 63.158 12.47 0.00 39.03 6.46
3203 6101 3.474904 CGTTTGCATCGACGCGGA 61.475 61.111 12.47 0.00 32.11 5.54
3204 6102 2.095843 GTTTGCATCGACGCGGAC 59.904 61.111 12.47 2.84 33.35 4.79
3205 6103 2.356433 TTTGCATCGACGCGGACA 60.356 55.556 12.47 0.00 33.35 4.02
3206 6104 2.663478 TTTGCATCGACGCGGACAC 61.663 57.895 12.47 0.00 33.35 3.67
3209 6107 2.503158 CATCGACGCGGACACGAA 60.503 61.111 12.47 2.04 44.60 3.85
3210 6108 2.084101 CATCGACGCGGACACGAAA 61.084 57.895 12.47 0.00 44.60 3.46
3211 6109 2.084681 ATCGACGCGGACACGAAAC 61.085 57.895 12.47 0.00 44.60 2.78
3212 6110 4.099585 CGACGCGGACACGAAACG 62.100 66.667 12.47 0.00 44.60 3.60
3213 6111 3.759828 GACGCGGACACGAAACGG 61.760 66.667 12.47 0.00 44.60 4.44
3214 6112 4.268939 ACGCGGACACGAAACGGA 62.269 61.111 12.47 0.00 44.60 4.69
3215 6113 3.759828 CGCGGACACGAAACGGAC 61.760 66.667 0.00 0.00 44.60 4.79
3216 6114 3.759828 GCGGACACGAAACGGACG 61.760 66.667 0.00 0.00 44.60 4.79
3217 6115 3.759828 CGGACACGAAACGGACGC 61.760 66.667 0.00 0.00 44.60 5.19
3218 6116 3.759828 GGACACGAAACGGACGCG 61.760 66.667 3.53 3.53 0.00 6.01
3219 6117 4.405173 GACACGAAACGGACGCGC 62.405 66.667 5.73 0.00 0.00 6.86
3221 6119 4.696172 CACGAAACGGACGCGCAC 62.696 66.667 5.73 0.00 0.00 5.34
3224 6122 3.475774 GAAACGGACGCGCACGAT 61.476 61.111 26.22 14.15 43.93 3.73
3225 6123 3.680072 GAAACGGACGCGCACGATG 62.680 63.158 26.22 5.06 43.93 3.84
3235 6133 4.530857 GCACGATGCCCGCCTACT 62.531 66.667 0.00 0.00 43.32 2.57
3236 6134 2.279517 CACGATGCCCGCCTACTC 60.280 66.667 0.00 0.00 43.32 2.59
3237 6135 3.537874 ACGATGCCCGCCTACTCC 61.538 66.667 0.00 0.00 43.32 3.85
3238 6136 3.227276 CGATGCCCGCCTACTCCT 61.227 66.667 0.00 0.00 0.00 3.69
3239 6137 2.737830 GATGCCCGCCTACTCCTC 59.262 66.667 0.00 0.00 0.00 3.71
3240 6138 2.844839 ATGCCCGCCTACTCCTCC 60.845 66.667 0.00 0.00 0.00 4.30
3244 6142 4.159108 CCGCCTACTCCTCCCCCT 62.159 72.222 0.00 0.00 0.00 4.79
3245 6143 2.840102 CGCCTACTCCTCCCCCTG 60.840 72.222 0.00 0.00 0.00 4.45
3246 6144 2.446802 GCCTACTCCTCCCCCTGG 60.447 72.222 0.00 0.00 0.00 4.45
3247 6145 2.446802 CCTACTCCTCCCCCTGGC 60.447 72.222 0.00 0.00 0.00 4.85
3248 6146 2.446802 CTACTCCTCCCCCTGGCC 60.447 72.222 0.00 0.00 0.00 5.36
3249 6147 4.103928 TACTCCTCCCCCTGGCCC 62.104 72.222 0.00 0.00 0.00 5.80
3264 6162 4.530857 CCCGCCCGTCAGTGGATC 62.531 72.222 0.00 0.00 39.99 3.36
3265 6163 4.530857 CCGCCCGTCAGTGGATCC 62.531 72.222 4.20 4.20 39.99 3.36
3266 6164 3.770040 CGCCCGTCAGTGGATCCA 61.770 66.667 11.44 11.44 0.00 3.41
3267 6165 2.911143 GCCCGTCAGTGGATCCAT 59.089 61.111 19.62 4.19 0.00 3.41
3268 6166 1.224592 GCCCGTCAGTGGATCCATT 59.775 57.895 19.62 11.58 0.00 3.16
3269 6167 0.815615 GCCCGTCAGTGGATCCATTC 60.816 60.000 19.62 5.91 0.00 2.67
3270 6168 0.833287 CCCGTCAGTGGATCCATTCT 59.167 55.000 19.62 8.54 0.00 2.40
3271 6169 1.202580 CCCGTCAGTGGATCCATTCTC 60.203 57.143 19.62 4.66 0.00 2.87
3272 6170 1.759445 CCGTCAGTGGATCCATTCTCT 59.241 52.381 19.62 7.30 0.00 3.10
3273 6171 2.169352 CCGTCAGTGGATCCATTCTCTT 59.831 50.000 19.62 0.00 0.00 2.85
3274 6172 3.452474 CGTCAGTGGATCCATTCTCTTC 58.548 50.000 19.62 2.57 0.00 2.87
3275 6173 3.739519 CGTCAGTGGATCCATTCTCTTCC 60.740 52.174 19.62 1.74 0.00 3.46
3276 6174 3.454082 GTCAGTGGATCCATTCTCTTCCT 59.546 47.826 19.62 4.42 0.00 3.36
3277 6175 3.708631 TCAGTGGATCCATTCTCTTCCTC 59.291 47.826 19.62 0.11 0.00 3.71
3278 6176 3.044894 AGTGGATCCATTCTCTTCCTCC 58.955 50.000 19.62 0.00 0.00 4.30
3279 6177 2.105649 GTGGATCCATTCTCTTCCTCCC 59.894 54.545 19.62 0.00 0.00 4.30
3280 6178 2.293788 TGGATCCATTCTCTTCCTCCCA 60.294 50.000 11.44 0.00 0.00 4.37
3281 6179 2.105649 GGATCCATTCTCTTCCTCCCAC 59.894 54.545 6.95 0.00 0.00 4.61
3282 6180 1.584724 TCCATTCTCTTCCTCCCACC 58.415 55.000 0.00 0.00 0.00 4.61
3283 6181 0.179000 CCATTCTCTTCCTCCCACCG 59.821 60.000 0.00 0.00 0.00 4.94
3284 6182 1.195115 CATTCTCTTCCTCCCACCGA 58.805 55.000 0.00 0.00 0.00 4.69
3285 6183 1.555075 CATTCTCTTCCTCCCACCGAA 59.445 52.381 0.00 0.00 0.00 4.30
3286 6184 1.724545 TTCTCTTCCTCCCACCGAAA 58.275 50.000 0.00 0.00 0.00 3.46
3287 6185 1.267121 TCTCTTCCTCCCACCGAAAG 58.733 55.000 0.00 0.00 0.00 2.62
3288 6186 0.391793 CTCTTCCTCCCACCGAAAGC 60.392 60.000 0.00 0.00 0.00 3.51
3289 6187 1.125093 TCTTCCTCCCACCGAAAGCA 61.125 55.000 0.00 0.00 0.00 3.91
3290 6188 0.955919 CTTCCTCCCACCGAAAGCAC 60.956 60.000 0.00 0.00 0.00 4.40
3291 6189 2.725203 TTCCTCCCACCGAAAGCACG 62.725 60.000 0.00 0.00 0.00 5.34
3292 6190 3.423154 CTCCCACCGAAAGCACGC 61.423 66.667 0.00 0.00 0.00 5.34
3293 6191 4.243008 TCCCACCGAAAGCACGCA 62.243 61.111 0.00 0.00 0.00 5.24
3294 6192 4.025401 CCCACCGAAAGCACGCAC 62.025 66.667 0.00 0.00 0.00 5.34
3295 6193 4.025401 CCACCGAAAGCACGCACC 62.025 66.667 0.00 0.00 0.00 5.01
3296 6194 4.025401 CACCGAAAGCACGCACCC 62.025 66.667 0.00 0.00 0.00 4.61
3300 6198 3.723348 GAAAGCACGCACCCGGAC 61.723 66.667 0.73 0.00 39.22 4.79
3334 6232 3.971702 GCCCAGTTCTGGTGCCCT 61.972 66.667 16.33 0.00 0.00 5.19
3335 6233 2.352805 CCCAGTTCTGGTGCCCTC 59.647 66.667 16.33 0.00 0.00 4.30
3644 6542 3.461773 TGCCCTCGCTAGCAGTCC 61.462 66.667 16.45 5.25 33.08 3.85
3645 6543 4.577246 GCCCTCGCTAGCAGTCCG 62.577 72.222 16.45 0.00 0.00 4.79
3646 6544 4.577246 CCCTCGCTAGCAGTCCGC 62.577 72.222 16.45 0.00 42.91 5.54
3647 6545 3.826754 CCTCGCTAGCAGTCCGCA 61.827 66.667 16.45 0.00 46.13 5.69
3648 6546 2.580867 CTCGCTAGCAGTCCGCAC 60.581 66.667 16.45 0.00 46.13 5.34
3649 6547 3.342370 CTCGCTAGCAGTCCGCACA 62.342 63.158 16.45 0.00 46.13 4.57
3650 6548 3.181967 CGCTAGCAGTCCGCACAC 61.182 66.667 16.45 0.00 46.13 3.82
3651 6549 2.048222 GCTAGCAGTCCGCACACA 60.048 61.111 10.63 0.00 46.13 3.72
3652 6550 2.383527 GCTAGCAGTCCGCACACAC 61.384 63.158 10.63 0.00 46.13 3.82
3653 6551 1.006220 CTAGCAGTCCGCACACACA 60.006 57.895 0.00 0.00 46.13 3.72
3654 6552 0.390340 CTAGCAGTCCGCACACACAT 60.390 55.000 0.00 0.00 46.13 3.21
3655 6553 0.892063 TAGCAGTCCGCACACACATA 59.108 50.000 0.00 0.00 46.13 2.29
3656 6554 0.670546 AGCAGTCCGCACACACATAC 60.671 55.000 0.00 0.00 46.13 2.39
3657 6555 0.948623 GCAGTCCGCACACACATACA 60.949 55.000 0.00 0.00 41.79 2.29
3658 6556 1.725641 CAGTCCGCACACACATACAT 58.274 50.000 0.00 0.00 0.00 2.29
3659 6557 1.660607 CAGTCCGCACACACATACATC 59.339 52.381 0.00 0.00 0.00 3.06
3660 6558 1.006832 GTCCGCACACACATACATCC 58.993 55.000 0.00 0.00 0.00 3.51
3661 6559 0.107897 TCCGCACACACATACATCCC 60.108 55.000 0.00 0.00 0.00 3.85
3662 6560 1.095228 CCGCACACACATACATCCCC 61.095 60.000 0.00 0.00 0.00 4.81
3663 6561 1.095228 CGCACACACATACATCCCCC 61.095 60.000 0.00 0.00 0.00 5.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.367894 AGCCATGTCATCATCATCGTCT 59.632 45.455 0.00 0.00 31.15 4.18
1 2 2.763933 AGCCATGTCATCATCATCGTC 58.236 47.619 0.00 0.00 31.15 4.20
2 3 2.924757 AGCCATGTCATCATCATCGT 57.075 45.000 0.00 0.00 31.15 3.73
16 17 2.188994 GGAGCGAGCTGAAGCCAT 59.811 61.111 0.84 0.00 43.38 4.40
308 380 3.571571 TCACACAATAGCGTGACAGTAC 58.428 45.455 0.00 0.00 39.34 2.73
370 442 6.762702 TGTCATTAAATGCAGTGATGACAT 57.237 33.333 28.17 0.84 46.74 3.06
410 482 7.038587 ACCATATAGTCACACACCAGTTTTAGA 60.039 37.037 0.00 0.00 0.00 2.10
411 483 7.103641 ACCATATAGTCACACACCAGTTTTAG 58.896 38.462 0.00 0.00 0.00 1.85
412 484 7.011499 ACCATATAGTCACACACCAGTTTTA 57.989 36.000 0.00 0.00 0.00 1.52
414 486 5.499004 ACCATATAGTCACACACCAGTTT 57.501 39.130 0.00 0.00 0.00 2.66
415 487 5.128827 CCTACCATATAGTCACACACCAGTT 59.871 44.000 0.00 0.00 0.00 3.16
454 541 7.913674 AGAAAAATAGGAAGCACTAGAACTG 57.086 36.000 0.00 0.00 0.00 3.16
461 548 7.867909 GCAAGTTTTAGAAAAATAGGAAGCACT 59.132 33.333 0.00 0.00 0.00 4.40
649 3459 1.601477 CACTGTCATGCTGGCCACA 60.601 57.895 0.00 5.81 0.00 4.17
697 3507 2.092323 GGAAGAAAGGTGGGGAAATCG 58.908 52.381 0.00 0.00 0.00 3.34
845 3670 0.736053 AGTTTTCAAGCCGACGCAAA 59.264 45.000 0.00 0.00 37.52 3.68
881 3708 7.703058 AATTTTGAAATCTTCCACTATCGGT 57.297 32.000 0.00 0.00 0.00 4.69
904 3731 1.899534 CCCGGTTGAAGGCGGAAAA 60.900 57.895 0.00 0.00 0.00 2.29
995 3822 3.411114 ATGTCAGCCGCCATCTGGG 62.411 63.158 0.00 0.00 40.85 4.45
996 3823 2.184830 CATGTCAGCCGCCATCTGG 61.185 63.158 0.00 0.00 38.53 3.86
997 3824 2.184830 CCATGTCAGCCGCCATCTG 61.185 63.158 0.00 0.00 0.00 2.90
998 3825 2.191375 CCATGTCAGCCGCCATCT 59.809 61.111 0.00 0.00 0.00 2.90
999 3826 3.589881 GCCATGTCAGCCGCCATC 61.590 66.667 0.00 0.00 0.00 3.51
1001 3828 4.349503 AAGCCATGTCAGCCGCCA 62.350 61.111 0.00 0.00 0.00 5.69
1002 3829 3.512516 GAAGCCATGTCAGCCGCC 61.513 66.667 0.00 0.00 0.00 6.13
1157 4002 2.672098 GAGGAATCAGCAGGTAGGAGA 58.328 52.381 0.00 0.00 0.00 3.71
1158 4003 1.691434 GGAGGAATCAGCAGGTAGGAG 59.309 57.143 0.00 0.00 0.00 3.69
1159 4004 1.692762 GGGAGGAATCAGCAGGTAGGA 60.693 57.143 0.00 0.00 0.00 2.94
1187 4032 2.697147 AAAGGCAAGCAGGGCGAAGA 62.697 55.000 0.00 0.00 38.57 2.87
1224 4069 3.305398 ACGAAGTAGAGCAAGGTGAAG 57.695 47.619 0.00 0.00 41.94 3.02
1239 4084 2.155194 CAAGAGCGAGGCGACGAAG 61.155 63.158 0.00 0.00 35.09 3.79
1364 4212 3.499737 GTTCCGCCACATGCCTCG 61.500 66.667 0.00 0.00 36.24 4.63
1373 4221 2.425592 CAGTCAGGTGTTCCGCCA 59.574 61.111 0.00 0.00 36.32 5.69
1443 4291 1.078848 AGAGAATCCACCAGCACGC 60.079 57.895 0.00 0.00 33.66 5.34
1451 4299 6.227298 TCCAAGATACTTGAGAGAATCCAC 57.773 41.667 12.25 0.00 33.66 4.02
1471 4319 5.508567 TGAAGCCATCTTTGATATGTTCCA 58.491 37.500 0.00 0.00 31.48 3.53
1475 4323 4.758674 CGGATGAAGCCATCTTTGATATGT 59.241 41.667 0.00 0.00 46.45 2.29
1476 4324 4.999311 TCGGATGAAGCCATCTTTGATATG 59.001 41.667 0.00 0.00 46.45 1.78
1477 4325 5.233083 TCGGATGAAGCCATCTTTGATAT 57.767 39.130 0.00 0.00 46.45 1.63
1478 4326 4.687901 TCGGATGAAGCCATCTTTGATA 57.312 40.909 0.00 0.00 46.45 2.15
1479 4327 3.565764 TCGGATGAAGCCATCTTTGAT 57.434 42.857 0.00 0.00 46.45 2.57
1480 4328 3.208594 CATCGGATGAAGCCATCTTTGA 58.791 45.455 12.67 0.00 46.45 2.69
1481 4329 2.292569 CCATCGGATGAAGCCATCTTTG 59.707 50.000 19.30 0.00 46.45 2.77
1482 4330 2.092212 ACCATCGGATGAAGCCATCTTT 60.092 45.455 19.30 0.00 46.45 2.52
1483 4331 1.492176 ACCATCGGATGAAGCCATCTT 59.508 47.619 19.30 0.00 46.45 2.40
1484 4332 1.135094 ACCATCGGATGAAGCCATCT 58.865 50.000 19.30 0.00 46.45 2.90
1485 4333 1.605710 CAACCATCGGATGAAGCCATC 59.394 52.381 19.30 0.00 46.50 3.51
1486 4334 1.683943 CAACCATCGGATGAAGCCAT 58.316 50.000 19.30 0.00 35.29 4.40
1487 4335 1.031571 GCAACCATCGGATGAAGCCA 61.032 55.000 19.30 0.00 0.00 4.75
1488 4336 1.728490 GGCAACCATCGGATGAAGCC 61.728 60.000 22.85 22.85 35.37 4.35
1489 4337 0.749454 AGGCAACCATCGGATGAAGC 60.749 55.000 19.30 17.28 37.17 3.86
1490 4338 1.303309 GAGGCAACCATCGGATGAAG 58.697 55.000 19.30 9.27 37.17 3.02
1491 4339 0.461870 CGAGGCAACCATCGGATGAA 60.462 55.000 19.30 0.00 35.33 2.57
1492 4340 1.143838 CGAGGCAACCATCGGATGA 59.856 57.895 19.30 0.00 35.33 2.92
1493 4341 0.250038 ATCGAGGCAACCATCGGATG 60.250 55.000 11.07 11.07 39.38 3.51
1494 4342 0.469917 AATCGAGGCAACCATCGGAT 59.530 50.000 0.00 0.00 39.38 4.18
1495 4343 1.116308 TAATCGAGGCAACCATCGGA 58.884 50.000 0.00 0.00 39.38 4.55
1496 4344 1.217882 GTAATCGAGGCAACCATCGG 58.782 55.000 0.00 0.00 39.38 4.18
1497 4345 0.852777 CGTAATCGAGGCAACCATCG 59.147 55.000 0.00 0.00 39.71 3.84
1498 4346 2.218953 TCGTAATCGAGGCAACCATC 57.781 50.000 0.00 0.00 41.35 3.51
1508 4356 2.048023 ACCGGCACCTCGTAATCGA 61.048 57.895 0.00 0.00 44.12 3.59
1509 4357 1.876714 CACCGGCACCTCGTAATCG 60.877 63.158 0.00 0.00 38.55 3.34
1510 4358 2.171725 GCACCGGCACCTCGTAATC 61.172 63.158 0.00 0.00 40.72 1.75
1511 4359 2.125269 GCACCGGCACCTCGTAAT 60.125 61.111 0.00 0.00 40.72 1.89
1512 4360 4.728102 CGCACCGGCACCTCGTAA 62.728 66.667 0.00 0.00 41.24 3.18
1529 4377 3.578688 ACCAGTTTATCGTCGTTGGTAC 58.421 45.455 0.00 0.00 37.17 3.34
1530 4378 3.367292 GGACCAGTTTATCGTCGTTGGTA 60.367 47.826 0.00 0.00 38.93 3.25
1531 4379 2.611224 GGACCAGTTTATCGTCGTTGGT 60.611 50.000 0.00 0.00 41.35 3.67
1532 4380 1.997606 GGACCAGTTTATCGTCGTTGG 59.002 52.381 0.00 0.00 0.00 3.77
1533 4381 2.666508 CTGGACCAGTTTATCGTCGTTG 59.333 50.000 13.84 0.00 0.00 4.10
1542 4390 4.927267 ATTCACATCCTGGACCAGTTTA 57.073 40.909 20.24 5.86 0.00 2.01
1552 4400 5.836347 TGTCTCGAAGATATTCACATCCTG 58.164 41.667 0.35 0.00 33.89 3.86
1554 4402 5.176590 GCTTGTCTCGAAGATATTCACATCC 59.823 44.000 0.35 0.00 33.89 3.51
1569 4417 2.816958 ATGGCGCTGCTTGTCTCG 60.817 61.111 7.64 0.00 0.00 4.04
1581 4429 3.459232 TCCTCTAAATCAGTCATGGCG 57.541 47.619 0.00 0.00 0.00 5.69
1588 4439 6.062258 TCCGGAAAATTCCTCTAAATCAGT 57.938 37.500 0.00 0.00 45.33 3.41
1595 4446 2.484770 CGCCATCCGGAAAATTCCTCTA 60.485 50.000 9.01 0.00 45.33 2.43
1673 4524 0.250467 ACTTGGTGTGCTACTGCTGG 60.250 55.000 0.00 0.00 40.48 4.85
1690 4541 9.566432 GGAATACAGAGATGGAAATAAATCACT 57.434 33.333 0.00 0.00 0.00 3.41
1829 4680 5.027099 CGTCGCTGATACTATGATGATGAG 58.973 45.833 0.00 0.00 0.00 2.90
1866 4717 5.776173 ACTCCTTCCTATCGTCACAATAG 57.224 43.478 0.00 0.00 0.00 1.73
1914 4765 6.989796 TCGTGTTTGTCAATGAAATCAATG 57.010 33.333 0.00 0.00 0.00 2.82
1932 4783 1.810412 GCCTGGTCTCTTGTTTCGTGT 60.810 52.381 0.00 0.00 0.00 4.49
2028 4879 6.422223 CGATTCAAGTACACTATTTGCATCC 58.578 40.000 0.00 0.00 29.13 3.51
2050 4901 2.100087 TCGCTATGCTATCAACAACCGA 59.900 45.455 0.00 0.00 0.00 4.69
2051 4902 2.218759 GTCGCTATGCTATCAACAACCG 59.781 50.000 0.00 0.00 0.00 4.44
2090 4941 4.740205 GCACCTTTTGTACTTCTTGCTTTC 59.260 41.667 0.00 0.00 0.00 2.62
2171 5022 0.107993 CTCGCTGCTGGAATCCTGAA 60.108 55.000 10.52 0.00 0.00 3.02
2214 5065 5.392380 GGCTGTATCTTCACAAACAGAATGG 60.392 44.000 5.55 0.00 43.62 3.16
2233 5084 1.980765 TGGAACATCAGAGAAGGCTGT 59.019 47.619 0.00 0.00 37.20 4.40
2249 5100 9.664332 CATAACAAAAATAATGGTTGGATGGAA 57.336 29.630 0.00 0.00 0.00 3.53
2251 5102 9.664332 TTCATAACAAAAATAATGGTTGGATGG 57.336 29.630 0.00 0.00 0.00 3.51
2268 5119 7.719193 TCTTCCTGTTTGTCATCTTCATAACAA 59.281 33.333 0.00 0.00 0.00 2.83
2269 5120 7.223584 TCTTCCTGTTTGTCATCTTCATAACA 58.776 34.615 0.00 0.00 0.00 2.41
2270 5121 7.148340 CCTCTTCCTGTTTGTCATCTTCATAAC 60.148 40.741 0.00 0.00 0.00 1.89
2378 5235 4.221482 GGAAACCATCAAATGCCTCTCTTT 59.779 41.667 0.00 0.00 0.00 2.52
2401 5258 0.994995 CTGGCTTCGTCGTCATTCTG 59.005 55.000 0.00 0.00 0.00 3.02
2461 5318 4.259970 CGAGGCAGAGTCATCGTTAATTTG 60.260 45.833 0.00 0.00 35.79 2.32
2540 5397 1.616374 TGAACCCGGGAAAATTTCAGC 59.384 47.619 32.02 0.00 0.00 4.26
2667 5524 4.499696 GCATCACCTTTCATTTAATCCCCG 60.500 45.833 0.00 0.00 0.00 5.73
2696 5553 0.548682 AGTGGACCAGAGGAAGCCAT 60.549 55.000 0.00 0.00 0.00 4.40
2999 5897 0.378257 CTGCGTGTTGTTGTTGCTCT 59.622 50.000 0.00 0.00 0.00 4.09
3000 5898 0.376852 TCTGCGTGTTGTTGTTGCTC 59.623 50.000 0.00 0.00 0.00 4.26
3001 5899 0.098728 GTCTGCGTGTTGTTGTTGCT 59.901 50.000 0.00 0.00 0.00 3.91
3002 5900 0.865639 GGTCTGCGTGTTGTTGTTGC 60.866 55.000 0.00 0.00 0.00 4.17
3003 5901 0.248458 GGGTCTGCGTGTTGTTGTTG 60.248 55.000 0.00 0.00 0.00 3.33
3005 5903 0.465460 ATGGGTCTGCGTGTTGTTGT 60.465 50.000 0.00 0.00 0.00 3.32
3007 5905 1.336755 GAAATGGGTCTGCGTGTTGTT 59.663 47.619 0.00 0.00 0.00 2.83
3008 5906 0.951558 GAAATGGGTCTGCGTGTTGT 59.048 50.000 0.00 0.00 0.00 3.32
3013 5911 0.319083 TGTACGAAATGGGTCTGCGT 59.681 50.000 0.00 0.00 38.81 5.24
3015 5913 1.463444 GTGTGTACGAAATGGGTCTGC 59.537 52.381 0.00 0.00 0.00 4.26
3017 5915 3.244422 ACATGTGTGTACGAAATGGGTCT 60.244 43.478 0.00 0.00 36.63 3.85
3028 5926 1.533731 CCCAAACGGACATGTGTGTAC 59.466 52.381 1.15 0.00 39.09 2.90
3032 5930 0.181587 TGACCCAAACGGACATGTGT 59.818 50.000 1.15 0.00 30.81 3.72
3033 5931 1.313772 TTGACCCAAACGGACATGTG 58.686 50.000 1.15 0.00 36.14 3.21
3034 5932 2.060050 TTTGACCCAAACGGACATGT 57.940 45.000 0.00 0.00 36.14 3.21
3035 5933 3.444703 TTTTTGACCCAAACGGACATG 57.555 42.857 0.00 0.00 36.14 3.21
3036 5934 3.244044 CCATTTTTGACCCAAACGGACAT 60.244 43.478 0.00 0.00 36.14 3.06
3038 5936 2.362717 TCCATTTTTGACCCAAACGGAC 59.637 45.455 0.00 0.00 32.79 4.79
3039 5937 2.362717 GTCCATTTTTGACCCAAACGGA 59.637 45.455 0.00 0.00 32.79 4.69
3040 5938 2.101582 TGTCCATTTTTGACCCAAACGG 59.898 45.455 0.00 0.00 32.79 4.44
3041 5939 3.120041 GTGTCCATTTTTGACCCAAACG 58.880 45.455 0.00 0.00 32.79 3.60
3042 5940 4.130286 TGTGTCCATTTTTGACCCAAAC 57.870 40.909 0.00 0.00 32.79 2.93
3043 5941 4.826274 TTGTGTCCATTTTTGACCCAAA 57.174 36.364 0.00 0.00 29.16 3.28
3044 5942 4.826274 TTTGTGTCCATTTTTGACCCAA 57.174 36.364 0.00 0.00 30.00 4.12
3045 5943 4.223923 ACTTTTGTGTCCATTTTTGACCCA 59.776 37.500 0.00 0.00 31.60 4.51
3046 5944 4.765273 ACTTTTGTGTCCATTTTTGACCC 58.235 39.130 0.00 0.00 31.60 4.46
3047 5945 4.502645 CGACTTTTGTGTCCATTTTTGACC 59.497 41.667 0.00 0.00 33.70 4.02
3048 5946 4.502645 CCGACTTTTGTGTCCATTTTTGAC 59.497 41.667 0.00 0.00 33.70 3.18
3049 5947 4.677584 CCGACTTTTGTGTCCATTTTTGA 58.322 39.130 0.00 0.00 33.70 2.69
3050 5948 3.245048 GCCGACTTTTGTGTCCATTTTTG 59.755 43.478 0.00 0.00 33.70 2.44
3051 5949 3.118956 TGCCGACTTTTGTGTCCATTTTT 60.119 39.130 0.00 0.00 33.70 1.94
3056 5954 0.950836 CATGCCGACTTTTGTGTCCA 59.049 50.000 0.00 0.00 33.70 4.02
3073 5971 3.446310 GTTTTTGACCCAAACGGACAT 57.554 42.857 0.00 0.00 36.14 3.06
3074 5972 2.943449 GTTTTTGACCCAAACGGACA 57.057 45.000 0.00 0.00 32.79 4.02
3079 5977 2.094649 TGTGTCCGTTTTTGACCCAAAC 60.095 45.455 0.00 0.00 32.79 2.93
3080 5978 2.168496 TGTGTCCGTTTTTGACCCAAA 58.832 42.857 0.00 0.00 31.60 3.28
3081 5979 1.835494 TGTGTCCGTTTTTGACCCAA 58.165 45.000 0.00 0.00 31.60 4.12
3082 5980 1.835494 TTGTGTCCGTTTTTGACCCA 58.165 45.000 0.00 0.00 31.60 4.51
3083 5981 2.943449 TTTGTGTCCGTTTTTGACCC 57.057 45.000 0.00 0.00 31.60 4.46
3084 5982 3.840468 ACTTTTGTGTCCGTTTTTGACC 58.160 40.909 0.00 0.00 31.60 4.02
3085 5983 4.090786 CCAACTTTTGTGTCCGTTTTTGAC 59.909 41.667 0.00 0.00 0.00 3.18
3086 5984 4.238514 CCAACTTTTGTGTCCGTTTTTGA 58.761 39.130 0.00 0.00 0.00 2.69
3087 5985 3.181525 GCCAACTTTTGTGTCCGTTTTTG 60.182 43.478 0.00 0.00 0.00 2.44
3088 5986 2.997303 GCCAACTTTTGTGTCCGTTTTT 59.003 40.909 0.00 0.00 0.00 1.94
3089 5987 2.612604 GCCAACTTTTGTGTCCGTTTT 58.387 42.857 0.00 0.00 0.00 2.43
3090 5988 1.134936 GGCCAACTTTTGTGTCCGTTT 60.135 47.619 0.00 0.00 0.00 3.60
3091 5989 0.458260 GGCCAACTTTTGTGTCCGTT 59.542 50.000 0.00 0.00 0.00 4.44
3092 5990 1.388837 GGGCCAACTTTTGTGTCCGT 61.389 55.000 4.39 0.00 0.00 4.69
3093 5991 1.362355 GGGCCAACTTTTGTGTCCG 59.638 57.895 4.39 0.00 0.00 4.79
3094 5992 0.827368 TTGGGCCAACTTTTGTGTCC 59.173 50.000 16.66 0.00 0.00 4.02
3095 5993 1.480545 ACTTGGGCCAACTTTTGTGTC 59.519 47.619 16.66 0.00 0.00 3.67
3096 5994 1.206849 CACTTGGGCCAACTTTTGTGT 59.793 47.619 16.66 7.08 0.00 3.72
3097 5995 1.938625 CACTTGGGCCAACTTTTGTG 58.061 50.000 16.66 17.32 0.00 3.33
3098 5996 0.177836 GCACTTGGGCCAACTTTTGT 59.822 50.000 16.66 8.70 0.00 2.83
3099 5997 2.990642 GCACTTGGGCCAACTTTTG 58.009 52.632 16.66 11.07 0.00 2.44
3108 6006 4.966787 TTGGGTCGGCACTTGGGC 62.967 66.667 0.00 0.00 39.06 5.36
3109 6007 2.203422 TTTGGGTCGGCACTTGGG 60.203 61.111 0.00 0.00 0.00 4.12
3110 6008 2.903547 CGTTTGGGTCGGCACTTGG 61.904 63.158 0.00 0.00 0.00 3.61
3111 6009 2.637025 CGTTTGGGTCGGCACTTG 59.363 61.111 0.00 0.00 0.00 3.16
3112 6010 2.593436 CCGTTTGGGTCGGCACTT 60.593 61.111 0.00 0.00 41.48 3.16
3113 6011 3.552384 TCCGTTTGGGTCGGCACT 61.552 61.111 0.00 0.00 46.49 4.40
3114 6012 3.351416 GTCCGTTTGGGTCGGCAC 61.351 66.667 0.00 0.00 46.49 5.01
3115 6013 4.973055 CGTCCGTTTGGGTCGGCA 62.973 66.667 0.00 0.00 46.49 5.69
3119 6017 1.838568 GAAGCACGTCCGTTTGGGTC 61.839 60.000 0.00 0.00 37.00 4.46
3120 6018 1.890510 GAAGCACGTCCGTTTGGGT 60.891 57.895 0.00 0.00 37.00 4.51
3121 6019 2.613506 GGAAGCACGTCCGTTTGGG 61.614 63.158 0.00 0.00 35.24 4.12
3122 6020 2.943653 GGAAGCACGTCCGTTTGG 59.056 61.111 0.00 0.00 0.00 3.28
3135 6033 0.954452 AGGCAGACAAAAAGCGGAAG 59.046 50.000 0.00 0.00 0.00 3.46
3136 6034 0.667993 CAGGCAGACAAAAAGCGGAA 59.332 50.000 0.00 0.00 0.00 4.30
3137 6035 1.795170 GCAGGCAGACAAAAAGCGGA 61.795 55.000 0.00 0.00 0.00 5.54
3138 6036 1.372128 GCAGGCAGACAAAAAGCGG 60.372 57.895 0.00 0.00 0.00 5.52
3139 6037 1.372128 GGCAGGCAGACAAAAAGCG 60.372 57.895 0.00 0.00 0.00 4.68
3140 6038 1.372128 CGGCAGGCAGACAAAAAGC 60.372 57.895 0.00 0.00 0.00 3.51
3141 6039 0.040067 GTCGGCAGGCAGACAAAAAG 60.040 55.000 17.60 0.00 40.10 2.27
3142 6040 1.452145 GGTCGGCAGGCAGACAAAAA 61.452 55.000 22.43 0.00 41.68 1.94
3143 6041 1.896660 GGTCGGCAGGCAGACAAAA 60.897 57.895 22.43 0.00 41.68 2.44
3144 6042 2.281484 GGTCGGCAGGCAGACAAA 60.281 61.111 22.43 0.00 41.68 2.83
3145 6043 4.329545 GGGTCGGCAGGCAGACAA 62.330 66.667 22.43 0.00 41.68 3.18
3147 6045 3.628646 AATGGGTCGGCAGGCAGAC 62.629 63.158 14.84 14.84 39.74 3.51
3148 6046 3.329542 GAATGGGTCGGCAGGCAGA 62.330 63.158 0.00 0.00 0.00 4.26
3149 6047 2.825836 GAATGGGTCGGCAGGCAG 60.826 66.667 0.00 0.00 0.00 4.85
3150 6048 4.424711 GGAATGGGTCGGCAGGCA 62.425 66.667 0.00 0.00 0.00 4.75
3151 6049 4.115199 AGGAATGGGTCGGCAGGC 62.115 66.667 0.00 0.00 0.00 4.85
3152 6050 2.124570 CAGGAATGGGTCGGCAGG 60.125 66.667 0.00 0.00 0.00 4.85
3153 6051 2.124570 CCAGGAATGGGTCGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
3154 6052 4.424711 GCCAGGAATGGGTCGGCA 62.425 66.667 0.00 0.00 42.50 5.69
3156 6054 4.506255 GGGCCAGGAATGGGTCGG 62.506 72.222 4.39 0.00 0.00 4.79
3157 6055 2.779742 TTTGGGCCAGGAATGGGTCG 62.780 60.000 6.23 0.00 0.00 4.79
3158 6056 0.325577 ATTTGGGCCAGGAATGGGTC 60.326 55.000 6.23 0.00 0.00 4.46
3159 6057 0.118952 AATTTGGGCCAGGAATGGGT 59.881 50.000 6.23 0.00 0.00 4.51
3160 6058 1.065272 CAAATTTGGGCCAGGAATGGG 60.065 52.381 6.23 0.00 0.00 4.00
3161 6059 1.907936 TCAAATTTGGGCCAGGAATGG 59.092 47.619 17.90 1.66 0.00 3.16
3162 6060 3.255969 CTCAAATTTGGGCCAGGAATG 57.744 47.619 17.90 5.72 0.00 2.67
3171 6069 2.676076 CAAACGAGGCTCAAATTTGGG 58.324 47.619 17.90 16.04 0.00 4.12
3172 6070 2.061028 GCAAACGAGGCTCAAATTTGG 58.939 47.619 25.16 9.84 32.17 3.28
3173 6071 2.741612 TGCAAACGAGGCTCAAATTTG 58.258 42.857 22.20 22.20 34.17 2.32
3174 6072 3.578688 GATGCAAACGAGGCTCAAATTT 58.421 40.909 15.95 8.78 0.00 1.82
3175 6073 2.414559 CGATGCAAACGAGGCTCAAATT 60.415 45.455 15.95 2.50 31.90 1.82
3176 6074 1.131126 CGATGCAAACGAGGCTCAAAT 59.869 47.619 15.95 0.00 31.90 2.32
3177 6075 0.516877 CGATGCAAACGAGGCTCAAA 59.483 50.000 15.95 0.00 31.90 2.69
3178 6076 0.320334 TCGATGCAAACGAGGCTCAA 60.320 50.000 15.95 0.00 35.75 3.02
3179 6077 1.014044 GTCGATGCAAACGAGGCTCA 61.014 55.000 15.95 0.00 43.39 4.26
3180 6078 1.710339 GTCGATGCAAACGAGGCTC 59.290 57.895 17.19 3.87 43.39 4.70
3181 6079 2.094659 CGTCGATGCAAACGAGGCT 61.095 57.895 19.95 0.00 43.39 4.58
3182 6080 2.395690 CGTCGATGCAAACGAGGC 59.604 61.111 19.95 10.22 43.39 4.70
3183 6081 2.395690 GCGTCGATGCAAACGAGG 59.604 61.111 24.45 24.31 43.39 4.63
3184 6082 2.018670 CGCGTCGATGCAAACGAG 59.981 61.111 27.92 14.16 43.39 4.18
3185 6083 3.474904 CCGCGTCGATGCAAACGA 61.475 61.111 27.92 16.87 39.40 3.85
3186 6084 3.474904 TCCGCGTCGATGCAAACG 61.475 61.111 27.92 12.29 41.68 3.60
3187 6085 2.095843 GTCCGCGTCGATGCAAAC 59.904 61.111 27.92 20.27 34.15 2.93
3188 6086 2.356433 TGTCCGCGTCGATGCAAA 60.356 55.556 27.92 13.14 34.15 3.68
3189 6087 3.109547 GTGTCCGCGTCGATGCAA 61.110 61.111 27.92 13.51 34.15 4.08
3192 6090 2.084101 TTTCGTGTCCGCGTCGATG 61.084 57.895 4.92 0.00 33.72 3.84
3193 6091 2.084681 GTTTCGTGTCCGCGTCGAT 61.085 57.895 4.92 0.00 33.72 3.59
3194 6092 2.726912 GTTTCGTGTCCGCGTCGA 60.727 61.111 4.92 7.10 0.00 4.20
3195 6093 4.099585 CGTTTCGTGTCCGCGTCG 62.100 66.667 4.92 4.60 0.00 5.12
3196 6094 3.759828 CCGTTTCGTGTCCGCGTC 61.760 66.667 4.92 0.00 0.00 5.19
3197 6095 4.268939 TCCGTTTCGTGTCCGCGT 62.269 61.111 4.92 0.00 0.00 6.01
3198 6096 3.759828 GTCCGTTTCGTGTCCGCG 61.760 66.667 0.00 0.00 0.00 6.46
3199 6097 3.759828 CGTCCGTTTCGTGTCCGC 61.760 66.667 0.00 0.00 0.00 5.54
3200 6098 3.759828 GCGTCCGTTTCGTGTCCG 61.760 66.667 0.00 0.00 0.00 4.79
3201 6099 3.759828 CGCGTCCGTTTCGTGTCC 61.760 66.667 0.00 0.00 34.71 4.02
3202 6100 4.405173 GCGCGTCCGTTTCGTGTC 62.405 66.667 8.43 0.00 40.28 3.67
3204 6102 4.696172 GTGCGCGTCCGTTTCGTG 62.696 66.667 8.43 0.00 40.95 4.35
3207 6105 3.475774 ATCGTGCGCGTCCGTTTC 61.476 61.111 20.50 0.00 39.49 2.78
3208 6106 3.773630 CATCGTGCGCGTCCGTTT 61.774 61.111 20.50 0.24 39.49 3.60
3218 6116 4.530857 AGTAGGCGGGCATCGTGC 62.531 66.667 3.78 1.92 44.08 5.34
3219 6117 2.279517 GAGTAGGCGGGCATCGTG 60.280 66.667 3.78 0.00 41.72 4.35
3220 6118 3.537874 GGAGTAGGCGGGCATCGT 61.538 66.667 3.78 0.00 41.72 3.73
3221 6119 3.214250 GAGGAGTAGGCGGGCATCG 62.214 68.421 3.78 0.00 42.76 3.84
3222 6120 2.737830 GAGGAGTAGGCGGGCATC 59.262 66.667 3.78 0.00 0.00 3.91
3223 6121 2.844839 GGAGGAGTAGGCGGGCAT 60.845 66.667 3.78 0.00 0.00 4.40
3227 6125 4.159108 AGGGGGAGGAGTAGGCGG 62.159 72.222 0.00 0.00 0.00 6.13
3228 6126 2.840102 CAGGGGGAGGAGTAGGCG 60.840 72.222 0.00 0.00 0.00 5.52
3229 6127 2.446802 CCAGGGGGAGGAGTAGGC 60.447 72.222 0.00 0.00 35.59 3.93
3230 6128 2.446802 GCCAGGGGGAGGAGTAGG 60.447 72.222 0.00 0.00 35.59 3.18
3231 6129 2.446802 GGCCAGGGGGAGGAGTAG 60.447 72.222 0.00 0.00 35.59 2.57
3232 6130 4.103928 GGGCCAGGGGGAGGAGTA 62.104 72.222 4.39 0.00 35.59 2.59
3247 6145 4.530857 GATCCACTGACGGGCGGG 62.531 72.222 0.00 0.00 0.00 6.13
3248 6146 4.530857 GGATCCACTGACGGGCGG 62.531 72.222 6.95 0.00 0.00 6.13
3249 6147 2.593468 AATGGATCCACTGACGGGCG 62.593 60.000 18.99 0.00 0.00 6.13
3250 6148 0.815615 GAATGGATCCACTGACGGGC 60.816 60.000 18.99 0.00 0.00 6.13
3251 6149 0.833287 AGAATGGATCCACTGACGGG 59.167 55.000 18.99 0.00 0.00 5.28
3252 6150 1.759445 AGAGAATGGATCCACTGACGG 59.241 52.381 18.99 0.00 0.00 4.79
3253 6151 3.452474 GAAGAGAATGGATCCACTGACG 58.548 50.000 18.99 0.00 0.00 4.35
3254 6152 3.454082 AGGAAGAGAATGGATCCACTGAC 59.546 47.826 18.99 9.53 34.30 3.51
3255 6153 3.708631 GAGGAAGAGAATGGATCCACTGA 59.291 47.826 18.99 0.00 34.30 3.41
3256 6154 3.181456 GGAGGAAGAGAATGGATCCACTG 60.181 52.174 18.99 0.00 34.30 3.66
3257 6155 3.044894 GGAGGAAGAGAATGGATCCACT 58.955 50.000 18.99 5.76 34.30 4.00
3258 6156 2.105649 GGGAGGAAGAGAATGGATCCAC 59.894 54.545 18.99 5.25 34.30 4.02
3259 6157 2.293788 TGGGAGGAAGAGAATGGATCCA 60.294 50.000 18.88 18.88 34.30 3.41
3260 6158 2.105649 GTGGGAGGAAGAGAATGGATCC 59.894 54.545 4.20 4.20 0.00 3.36
3261 6159 2.105649 GGTGGGAGGAAGAGAATGGATC 59.894 54.545 0.00 0.00 0.00 3.36
3262 6160 2.131023 GGTGGGAGGAAGAGAATGGAT 58.869 52.381 0.00 0.00 0.00 3.41
3263 6161 1.584724 GGTGGGAGGAAGAGAATGGA 58.415 55.000 0.00 0.00 0.00 3.41
3264 6162 0.179000 CGGTGGGAGGAAGAGAATGG 59.821 60.000 0.00 0.00 0.00 3.16
3265 6163 1.195115 TCGGTGGGAGGAAGAGAATG 58.805 55.000 0.00 0.00 0.00 2.67
3266 6164 1.952621 TTCGGTGGGAGGAAGAGAAT 58.047 50.000 0.00 0.00 0.00 2.40
3267 6165 1.623811 CTTTCGGTGGGAGGAAGAGAA 59.376 52.381 0.00 0.00 0.00 2.87
3268 6166 1.267121 CTTTCGGTGGGAGGAAGAGA 58.733 55.000 0.00 0.00 0.00 3.10
3269 6167 0.391793 GCTTTCGGTGGGAGGAAGAG 60.392 60.000 0.00 0.00 0.00 2.85
3270 6168 1.125093 TGCTTTCGGTGGGAGGAAGA 61.125 55.000 0.00 0.00 0.00 2.87
3271 6169 0.955919 GTGCTTTCGGTGGGAGGAAG 60.956 60.000 0.00 0.00 0.00 3.46
3272 6170 1.072505 GTGCTTTCGGTGGGAGGAA 59.927 57.895 0.00 0.00 0.00 3.36
3273 6171 2.747686 GTGCTTTCGGTGGGAGGA 59.252 61.111 0.00 0.00 0.00 3.71
3274 6172 2.742372 CGTGCTTTCGGTGGGAGG 60.742 66.667 0.00 0.00 0.00 4.30
3275 6173 3.423154 GCGTGCTTTCGGTGGGAG 61.423 66.667 0.00 0.00 0.00 4.30
3276 6174 4.243008 TGCGTGCTTTCGGTGGGA 62.243 61.111 0.00 0.00 0.00 4.37
3277 6175 4.025401 GTGCGTGCTTTCGGTGGG 62.025 66.667 0.00 0.00 0.00 4.61
3278 6176 4.025401 GGTGCGTGCTTTCGGTGG 62.025 66.667 0.00 0.00 0.00 4.61
3279 6177 4.025401 GGGTGCGTGCTTTCGGTG 62.025 66.667 0.00 0.00 0.00 4.94
3283 6181 3.723348 GTCCGGGTGCGTGCTTTC 61.723 66.667 0.00 0.00 0.00 2.62
3627 6525 3.461773 GGACTGCTAGCGAGGGCA 61.462 66.667 10.77 0.00 43.41 5.36
3628 6526 4.577246 CGGACTGCTAGCGAGGGC 62.577 72.222 10.77 4.82 40.37 5.19
3629 6527 4.577246 GCGGACTGCTAGCGAGGG 62.577 72.222 10.77 2.86 41.73 4.30
3630 6528 3.826754 TGCGGACTGCTAGCGAGG 61.827 66.667 10.77 5.45 46.63 4.63
3631 6529 2.580867 GTGCGGACTGCTAGCGAG 60.581 66.667 10.77 11.05 46.63 5.03
3632 6530 3.370231 TGTGCGGACTGCTAGCGA 61.370 61.111 10.77 0.00 46.63 4.93
3633 6531 3.181967 GTGTGCGGACTGCTAGCG 61.182 66.667 10.77 7.61 46.63 4.26
3634 6532 2.048222 TGTGTGCGGACTGCTAGC 60.048 61.111 8.10 8.10 46.63 3.42
3635 6533 0.390340 ATGTGTGTGCGGACTGCTAG 60.390 55.000 8.99 0.00 46.63 3.42
3636 6534 0.892063 TATGTGTGTGCGGACTGCTA 59.108 50.000 8.99 0.00 46.63 3.49
3637 6535 0.670546 GTATGTGTGTGCGGACTGCT 60.671 55.000 8.99 0.00 46.63 4.24
3638 6536 0.948623 TGTATGTGTGTGCGGACTGC 60.949 55.000 8.99 0.00 46.70 4.40
3639 6537 1.660607 GATGTATGTGTGTGCGGACTG 59.339 52.381 8.99 0.00 0.00 3.51
3640 6538 1.405526 GGATGTATGTGTGTGCGGACT 60.406 52.381 8.99 0.00 0.00 3.85
3641 6539 1.006832 GGATGTATGTGTGTGCGGAC 58.993 55.000 0.00 0.00 0.00 4.79
3642 6540 0.107897 GGGATGTATGTGTGTGCGGA 60.108 55.000 0.00 0.00 0.00 5.54
3643 6541 1.095228 GGGGATGTATGTGTGTGCGG 61.095 60.000 0.00 0.00 0.00 5.69
3644 6542 1.095228 GGGGGATGTATGTGTGTGCG 61.095 60.000 0.00 0.00 0.00 5.34
3645 6543 2.793831 GGGGGATGTATGTGTGTGC 58.206 57.895 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.