Multiple sequence alignment - TraesCS5B01G098700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G098700 chr5B 100.000 5120 0 0 1 5120 130910280 130915399 0.000000e+00 9455.0
1 TraesCS5B01G098700 chr5B 93.814 291 17 1 1 291 541956475 541956186 2.190000e-118 436.0
2 TraesCS5B01G098700 chr5B 80.638 470 45 25 4649 5115 50510628 50511054 6.400000e-84 322.0
3 TraesCS5B01G098700 chr5B 89.381 113 7 5 4539 4650 50510477 50510585 2.490000e-28 137.0
4 TraesCS5B01G098700 chr5B 83.942 137 19 3 2793 2926 606705542 606705678 1.500000e-25 128.0
5 TraesCS5B01G098700 chr5D 95.943 4042 106 17 281 4288 118834420 118838437 0.000000e+00 6503.0
6 TraesCS5B01G098700 chr5D 87.139 692 50 17 4446 5120 118838641 118839310 0.000000e+00 749.0
7 TraesCS5B01G098700 chr5D 84.615 234 32 4 4885 5117 47851982 47852212 3.990000e-56 230.0
8 TraesCS5B01G098700 chr5A 94.543 4068 113 36 281 4288 128426122 128430140 0.000000e+00 6181.0
9 TraesCS5B01G098700 chr5A 90.830 687 42 9 4446 5117 128430326 128431006 0.000000e+00 900.0
10 TraesCS5B01G098700 chr5A 78.836 756 89 37 4390 5115 37974590 37975304 1.310000e-120 444.0
11 TraesCS5B01G098700 chr5A 93.220 295 19 1 1 295 650266019 650266312 2.830000e-117 433.0
12 TraesCS5B01G098700 chr5A 93.772 289 17 1 1 289 705787299 705787012 2.830000e-117 433.0
13 TraesCS5B01G098700 chr5A 83.824 136 20 2 2793 2926 94920763 94920628 1.500000e-25 128.0
14 TraesCS5B01G098700 chr5A 83.824 136 20 2 2793 2926 99084597 99084732 1.500000e-25 128.0
15 TraesCS5B01G098700 chr4A 95.714 280 12 0 1 280 231095181 231095460 7.820000e-123 451.0
16 TraesCS5B01G098700 chr4A 84.615 117 18 0 3087 3203 549001775 549001659 3.240000e-22 117.0
17 TraesCS5B01G098700 chr2A 94.198 293 17 0 1 293 701058079 701058371 1.010000e-121 448.0
18 TraesCS5B01G098700 chr2A 93.448 290 18 1 1 290 643200899 643200611 3.660000e-116 429.0
19 TraesCS5B01G098700 chr7A 94.366 284 16 0 1 284 710689394 710689111 2.190000e-118 436.0
20 TraesCS5B01G098700 chr7A 92.405 79 5 1 2155 2232 503779648 503779570 1.510000e-20 111.0
21 TraesCS5B01G098700 chr3A 94.386 285 15 1 1 285 178151618 178151901 2.190000e-118 436.0
22 TraesCS5B01G098700 chr3A 86.111 72 10 0 1419 1490 401684538 401684609 1.530000e-10 78.7
23 TraesCS5B01G098700 chr6A 94.643 280 15 0 1 280 116940886 116941165 7.870000e-118 435.0
24 TraesCS5B01G098700 chr1D 87.500 144 18 0 2783 2926 287831115 287830972 3.170000e-37 167.0
25 TraesCS5B01G098700 chr2B 88.112 143 12 2 4979 5120 11286937 11287075 1.140000e-36 165.0
26 TraesCS5B01G098700 chr1B 85.811 148 21 0 3055 3202 389535051 389534904 1.910000e-34 158.0
27 TraesCS5B01G098700 chr1B 94.444 36 1 1 4321 4356 623030707 623030741 3.000000e-03 54.7
28 TraesCS5B01G098700 chr2D 89.381 113 11 1 5008 5119 8495973 8496085 1.920000e-29 141.0
29 TraesCS5B01G098700 chr2D 84.270 89 13 1 3055 3143 128105612 128105699 9.130000e-13 86.1
30 TraesCS5B01G098700 chr1A 85.294 136 18 2 2793 2926 592524491 592524626 6.910000e-29 139.0
31 TraesCS5B01G098700 chr7B 83.824 136 20 2 2793 2926 33979693 33979558 1.500000e-25 128.0
32 TraesCS5B01G098700 chr6B 83.824 136 20 2 2793 2926 63717473 63717608 1.500000e-25 128.0
33 TraesCS5B01G098700 chr6B 84.615 65 7 3 4328 4391 478890451 478890389 1.540000e-05 62.1
34 TraesCS5B01G098700 chr3B 90.361 83 8 0 3266 3348 400527820 400527738 5.420000e-20 110.0
35 TraesCS5B01G098700 chr3B 90.361 83 8 0 3087 3169 660066368 660066450 5.420000e-20 110.0
36 TraesCS5B01G098700 chr6D 83.146 89 13 2 3055 3143 411386813 411386727 4.250000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G098700 chr5B 130910280 130915399 5119 False 9455.0 9455 100.0000 1 5120 1 chr5B.!!$F1 5119
1 TraesCS5B01G098700 chr5B 50510477 50511054 577 False 229.5 322 85.0095 4539 5115 2 chr5B.!!$F3 576
2 TraesCS5B01G098700 chr5D 118834420 118839310 4890 False 3626.0 6503 91.5410 281 5120 2 chr5D.!!$F2 4839
3 TraesCS5B01G098700 chr5A 128426122 128431006 4884 False 3540.5 6181 92.6865 281 5117 2 chr5A.!!$F4 4836
4 TraesCS5B01G098700 chr5A 37974590 37975304 714 False 444.0 444 78.8360 4390 5115 1 chr5A.!!$F1 725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.039256 TTGCCAACGAAGATGCTTGC 60.039 50.0 0.00 0.00 0.00 4.01 F
249 250 0.108377 CGTGTGGTCGGGATGATGAA 60.108 55.0 0.00 0.00 0.00 2.57 F
251 252 0.108377 TGTGGTCGGGATGATGAACG 60.108 55.0 0.00 0.00 0.00 3.95 F
646 652 0.938008 CGACTGTCGATGATCCGAGA 59.062 55.0 24.86 0.00 43.74 4.04 F
2009 2038 0.753262 ATGTCATCCGGCAGGTAGAC 59.247 55.0 18.08 18.08 40.31 2.59 F
2747 2800 0.322098 TGTATGGGTGGAAGGTTGCG 60.322 55.0 0.00 0.00 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1126 1154 0.389391 CTGACGACCAAGTGACCTGT 59.611 55.000 0.00 0.00 0.00 4.00 R
1218 1246 1.448985 GCAAACTGAACCGCCTATCA 58.551 50.000 0.00 0.00 0.00 2.15 R
1862 1891 2.138320 ACATGAGTTTGTGTGAGCTCG 58.862 47.619 9.64 0.00 0.00 5.03 R
2376 2429 1.663379 GAAATACTTGCCCCGCCACC 61.663 60.000 0.00 0.00 0.00 4.61 R
3814 3875 0.393402 TGCACAGGATGGCATCAGAC 60.393 55.000 27.39 16.31 43.62 3.51 R
4656 4831 0.038067 TTGCTGCCATGTGAATGTGC 60.038 50.000 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.329545 GGGGCAGAGGTGTGCGAA 62.330 66.667 0.00 0.00 45.00 4.70
19 20 2.743928 GGGCAGAGGTGTGCGAAG 60.744 66.667 0.00 0.00 45.00 3.79
20 21 2.031163 GGCAGAGGTGTGCGAAGT 59.969 61.111 0.00 0.00 45.00 3.01
21 22 2.320587 GGCAGAGGTGTGCGAAGTG 61.321 63.158 0.00 0.00 45.00 3.16
22 23 1.595382 GCAGAGGTGTGCGAAGTGT 60.595 57.895 0.00 0.00 32.74 3.55
23 24 1.160329 GCAGAGGTGTGCGAAGTGTT 61.160 55.000 0.00 0.00 32.74 3.32
24 25 1.299541 CAGAGGTGTGCGAAGTGTTT 58.700 50.000 0.00 0.00 0.00 2.83
25 26 1.003545 CAGAGGTGTGCGAAGTGTTTG 60.004 52.381 0.00 0.00 0.00 2.93
26 27 1.134521 AGAGGTGTGCGAAGTGTTTGA 60.135 47.619 0.00 0.00 0.00 2.69
27 28 1.003866 GAGGTGTGCGAAGTGTTTGAC 60.004 52.381 0.00 0.00 0.00 3.18
28 29 0.315869 GGTGTGCGAAGTGTTTGACG 60.316 55.000 0.00 0.00 0.00 4.35
29 30 0.648441 GTGTGCGAAGTGTTTGACGA 59.352 50.000 0.00 0.00 0.00 4.20
30 31 0.648441 TGTGCGAAGTGTTTGACGAC 59.352 50.000 0.00 0.00 0.00 4.34
31 32 0.648441 GTGCGAAGTGTTTGACGACA 59.352 50.000 0.00 0.00 0.00 4.35
32 33 1.061421 GTGCGAAGTGTTTGACGACAA 59.939 47.619 0.00 0.00 0.00 3.18
33 34 1.061421 TGCGAAGTGTTTGACGACAAC 59.939 47.619 0.00 0.00 35.63 3.32
34 35 1.593793 GCGAAGTGTTTGACGACAACC 60.594 52.381 0.00 0.00 35.63 3.77
35 36 1.331680 CGAAGTGTTTGACGACAACCG 60.332 52.381 0.00 0.00 45.44 4.44
36 37 0.375803 AAGTGTTTGACGACAACCGC 59.624 50.000 0.00 0.00 43.32 5.68
37 38 1.367195 GTGTTTGACGACAACCGCG 60.367 57.895 0.00 0.00 43.32 6.46
38 39 2.247267 GTTTGACGACAACCGCGG 59.753 61.111 26.86 26.86 43.32 6.46
39 40 2.202905 TTTGACGACAACCGCGGT 60.203 55.556 28.70 28.70 43.32 5.68
40 41 2.239124 TTTGACGACAACCGCGGTC 61.239 57.895 34.29 18.86 43.32 4.79
75 76 3.398920 CGCATAGCAGTTCCACCG 58.601 61.111 0.00 0.00 0.00 4.94
76 77 2.813179 CGCATAGCAGTTCCACCGC 61.813 63.158 0.00 0.00 0.00 5.68
77 78 1.745115 GCATAGCAGTTCCACCGCA 60.745 57.895 0.00 0.00 0.00 5.69
78 79 1.982073 GCATAGCAGTTCCACCGCAC 61.982 60.000 0.00 0.00 0.00 5.34
79 80 1.447838 ATAGCAGTTCCACCGCACG 60.448 57.895 0.00 0.00 0.00 5.34
82 83 4.988598 CAGTTCCACCGCACGCCT 62.989 66.667 0.00 0.00 0.00 5.52
83 84 4.681978 AGTTCCACCGCACGCCTC 62.682 66.667 0.00 0.00 0.00 4.70
99 100 4.680237 TCCGAGTGGCAACCGCTG 62.680 66.667 4.05 0.00 45.19 5.18
100 101 4.680237 CCGAGTGGCAACCGCTGA 62.680 66.667 4.05 0.00 45.19 4.26
101 102 3.414700 CGAGTGGCAACCGCTGAC 61.415 66.667 4.05 0.00 45.19 3.51
102 103 3.050275 GAGTGGCAACCGCTGACC 61.050 66.667 4.05 0.00 45.19 4.02
103 104 4.988598 AGTGGCAACCGCTGACCG 62.989 66.667 0.00 0.00 43.37 4.79
114 115 4.776322 CTGACCGCGGGATGGCAA 62.776 66.667 31.76 5.28 0.00 4.52
119 120 4.114997 CGCGGGATGGCAACCAAC 62.115 66.667 16.20 5.72 36.95 3.77
120 121 4.114997 GCGGGATGGCAACCAACG 62.115 66.667 16.20 11.62 36.95 4.10
121 122 2.671619 CGGGATGGCAACCAACGT 60.672 61.111 16.20 0.00 36.95 3.99
122 123 2.961768 GGGATGGCAACCAACGTG 59.038 61.111 16.20 0.00 36.95 4.49
123 124 2.258286 GGATGGCAACCAACGTGC 59.742 61.111 9.17 0.00 36.95 5.34
124 125 2.126888 GATGGCAACCAACGTGCG 60.127 61.111 0.00 0.00 43.18 5.34
125 126 3.609214 GATGGCAACCAACGTGCGG 62.609 63.158 2.77 2.77 43.18 5.69
133 134 4.368808 CAACGTGCGGGCGAACTG 62.369 66.667 0.00 0.00 35.59 3.16
134 135 4.595538 AACGTGCGGGCGAACTGA 62.596 61.111 0.00 0.00 35.59 3.41
137 138 3.112709 GTGCGGGCGAACTGACTC 61.113 66.667 0.00 0.00 0.00 3.36
138 139 4.717629 TGCGGGCGAACTGACTCG 62.718 66.667 0.00 0.67 41.84 4.18
144 145 3.538841 CGAACTGACTCGCACACC 58.461 61.111 0.00 0.00 31.04 4.16
145 146 2.365068 CGAACTGACTCGCACACCG 61.365 63.158 0.00 0.00 38.61 4.94
146 147 2.658707 GAACTGACTCGCACACCGC 61.659 63.158 0.00 0.00 36.73 5.68
147 148 3.439513 AACTGACTCGCACACCGCA 62.440 57.895 0.00 0.00 42.60 5.69
148 149 3.406361 CTGACTCGCACACCGCAC 61.406 66.667 0.00 0.00 42.60 5.34
149 150 4.214327 TGACTCGCACACCGCACA 62.214 61.111 0.00 0.00 42.60 4.57
150 151 3.702555 GACTCGCACACCGCACAC 61.703 66.667 0.00 0.00 42.60 3.82
171 172 2.181021 CCTCGTCCTACGTGGCAC 59.819 66.667 7.79 7.79 46.16 5.01
172 173 2.632544 CCTCGTCCTACGTGGCACA 61.633 63.158 19.09 0.00 46.16 4.57
173 174 1.154016 CTCGTCCTACGTGGCACAG 60.154 63.158 19.09 12.74 41.80 3.66
174 175 1.583495 CTCGTCCTACGTGGCACAGA 61.583 60.000 19.09 5.52 41.80 3.41
175 176 1.174078 TCGTCCTACGTGGCACAGAA 61.174 55.000 19.09 0.72 41.80 3.02
176 177 0.319211 CGTCCTACGTGGCACAGAAA 60.319 55.000 19.09 0.00 41.80 2.52
177 178 1.870580 CGTCCTACGTGGCACAGAAAA 60.871 52.381 19.09 0.00 41.80 2.29
178 179 1.529865 GTCCTACGTGGCACAGAAAAC 59.470 52.381 19.09 6.09 41.80 2.43
179 180 0.872388 CCTACGTGGCACAGAAAACC 59.128 55.000 19.09 0.00 41.80 3.27
180 181 0.511221 CTACGTGGCACAGAAAACCG 59.489 55.000 19.09 3.20 41.80 4.44
181 182 0.881159 TACGTGGCACAGAAAACCGG 60.881 55.000 19.09 0.00 41.80 5.28
182 183 2.335011 GTGGCACAGAAAACCGGC 59.665 61.111 13.86 0.00 41.80 6.13
183 184 2.909965 TGGCACAGAAAACCGGCC 60.910 61.111 0.00 0.00 44.82 6.13
184 185 4.038080 GGCACAGAAAACCGGCCG 62.038 66.667 21.04 21.04 34.56 6.13
185 186 4.038080 GCACAGAAAACCGGCCGG 62.038 66.667 42.17 42.17 42.03 6.13
195 196 3.121019 CCGGCCGGTTTGTTTCAA 58.879 55.556 36.64 0.00 0.00 2.69
196 197 1.007849 CCGGCCGGTTTGTTTCAAG 60.008 57.895 36.64 5.51 0.00 3.02
197 198 1.448922 CCGGCCGGTTTGTTTCAAGA 61.449 55.000 36.64 0.00 0.00 3.02
198 199 0.596082 CGGCCGGTTTGTTTCAAGAT 59.404 50.000 20.10 0.00 0.00 2.40
199 200 1.000717 CGGCCGGTTTGTTTCAAGATT 60.001 47.619 20.10 0.00 0.00 2.40
200 201 2.672714 GGCCGGTTTGTTTCAAGATTC 58.327 47.619 1.90 0.00 0.00 2.52
201 202 2.035321 GGCCGGTTTGTTTCAAGATTCA 59.965 45.455 1.90 0.00 0.00 2.57
202 203 3.306019 GGCCGGTTTGTTTCAAGATTCAT 60.306 43.478 1.90 0.00 0.00 2.57
203 204 3.674753 GCCGGTTTGTTTCAAGATTCATG 59.325 43.478 1.90 0.00 0.00 3.07
204 205 3.674753 CCGGTTTGTTTCAAGATTCATGC 59.325 43.478 0.00 0.00 0.00 4.06
205 206 4.297510 CGGTTTGTTTCAAGATTCATGCA 58.702 39.130 0.00 0.00 0.00 3.96
206 207 4.148696 CGGTTTGTTTCAAGATTCATGCAC 59.851 41.667 0.00 0.00 0.00 4.57
207 208 5.049167 GGTTTGTTTCAAGATTCATGCACA 58.951 37.500 0.00 0.00 0.00 4.57
208 209 5.523188 GGTTTGTTTCAAGATTCATGCACAA 59.477 36.000 0.00 3.68 0.00 3.33
209 210 6.036953 GGTTTGTTTCAAGATTCATGCACAAA 59.963 34.615 11.80 11.80 32.73 2.83
210 211 6.831727 TTGTTTCAAGATTCATGCACAAAG 57.168 33.333 0.00 0.00 0.00 2.77
211 212 5.904941 TGTTTCAAGATTCATGCACAAAGT 58.095 33.333 0.00 0.00 0.00 2.66
212 213 6.339730 TGTTTCAAGATTCATGCACAAAGTT 58.660 32.000 0.00 0.00 0.00 2.66
213 214 6.256104 TGTTTCAAGATTCATGCACAAAGTTG 59.744 34.615 0.00 0.00 0.00 3.16
214 215 4.300803 TCAAGATTCATGCACAAAGTTGC 58.699 39.130 0.00 0.00 43.31 4.17
215 216 3.308438 AGATTCATGCACAAAGTTGCC 57.692 42.857 0.00 0.00 42.25 4.52
216 217 2.629137 AGATTCATGCACAAAGTTGCCA 59.371 40.909 0.00 0.00 42.25 4.92
217 218 2.975732 TTCATGCACAAAGTTGCCAA 57.024 40.000 0.00 0.00 42.25 4.52
218 219 2.222007 TCATGCACAAAGTTGCCAAC 57.778 45.000 0.00 0.00 42.25 3.77
219 220 0.854062 CATGCACAAAGTTGCCAACG 59.146 50.000 1.20 0.00 42.25 4.10
220 221 0.743688 ATGCACAAAGTTGCCAACGA 59.256 45.000 1.20 0.00 42.25 3.85
221 222 0.528017 TGCACAAAGTTGCCAACGAA 59.472 45.000 1.20 0.00 42.25 3.85
222 223 1.199624 GCACAAAGTTGCCAACGAAG 58.800 50.000 1.20 0.00 36.42 3.79
223 224 1.202245 GCACAAAGTTGCCAACGAAGA 60.202 47.619 1.20 0.00 36.42 2.87
224 225 2.543653 GCACAAAGTTGCCAACGAAGAT 60.544 45.455 1.20 0.00 36.42 2.40
225 226 3.044986 CACAAAGTTGCCAACGAAGATG 58.955 45.455 1.20 1.40 36.23 2.90
226 227 2.053627 CAAAGTTGCCAACGAAGATGC 58.946 47.619 1.20 0.00 36.23 3.91
227 228 1.609208 AAGTTGCCAACGAAGATGCT 58.391 45.000 1.20 0.00 36.23 3.79
228 229 1.609208 AGTTGCCAACGAAGATGCTT 58.391 45.000 1.20 0.00 36.23 3.91
229 230 1.267806 AGTTGCCAACGAAGATGCTTG 59.732 47.619 1.20 0.00 36.23 4.01
230 231 0.039256 TTGCCAACGAAGATGCTTGC 60.039 50.000 0.00 0.00 0.00 4.01
231 232 1.512734 GCCAACGAAGATGCTTGCG 60.513 57.895 0.00 0.00 0.00 4.85
232 233 1.868997 CCAACGAAGATGCTTGCGT 59.131 52.632 0.00 0.00 38.81 5.24
233 234 0.453282 CCAACGAAGATGCTTGCGTG 60.453 55.000 0.00 0.00 37.03 5.34
234 235 0.235665 CAACGAAGATGCTTGCGTGT 59.764 50.000 0.00 0.00 37.03 4.49
235 236 0.235665 AACGAAGATGCTTGCGTGTG 59.764 50.000 0.00 0.00 37.03 3.82
236 237 1.133253 CGAAGATGCTTGCGTGTGG 59.867 57.895 0.00 0.00 0.00 4.17
237 238 1.568612 CGAAGATGCTTGCGTGTGGT 61.569 55.000 0.00 0.00 0.00 4.16
238 239 0.166814 GAAGATGCTTGCGTGTGGTC 59.833 55.000 0.00 0.00 0.00 4.02
239 240 1.568612 AAGATGCTTGCGTGTGGTCG 61.569 55.000 0.00 0.00 0.00 4.79
240 241 3.027170 GATGCTTGCGTGTGGTCGG 62.027 63.158 0.00 0.00 0.00 4.79
242 243 4.980805 GCTTGCGTGTGGTCGGGA 62.981 66.667 0.00 0.00 0.00 5.14
243 244 2.047274 CTTGCGTGTGGTCGGGAT 60.047 61.111 0.00 0.00 0.00 3.85
244 245 2.358125 TTGCGTGTGGTCGGGATG 60.358 61.111 0.00 0.00 0.00 3.51
245 246 2.779951 CTTGCGTGTGGTCGGGATGA 62.780 60.000 0.00 0.00 0.00 2.92
246 247 2.178876 TTGCGTGTGGTCGGGATGAT 62.179 55.000 0.00 0.00 0.00 2.45
247 248 2.173669 GCGTGTGGTCGGGATGATG 61.174 63.158 0.00 0.00 0.00 3.07
248 249 1.515487 CGTGTGGTCGGGATGATGA 59.485 57.895 0.00 0.00 0.00 2.92
249 250 0.108377 CGTGTGGTCGGGATGATGAA 60.108 55.000 0.00 0.00 0.00 2.57
250 251 1.369625 GTGTGGTCGGGATGATGAAC 58.630 55.000 0.00 0.00 0.00 3.18
251 252 0.108377 TGTGGTCGGGATGATGAACG 60.108 55.000 0.00 0.00 0.00 3.95
252 253 1.153449 TGGTCGGGATGATGAACGC 60.153 57.895 0.00 0.00 0.00 4.84
253 254 1.887707 GGTCGGGATGATGAACGCC 60.888 63.158 0.00 0.00 0.00 5.68
254 255 1.887707 GTCGGGATGATGAACGCCC 60.888 63.158 0.00 0.00 37.21 6.13
255 256 2.189257 CGGGATGATGAACGCCCA 59.811 61.111 0.00 0.00 40.71 5.36
256 257 2.180204 CGGGATGATGAACGCCCAC 61.180 63.158 0.00 0.00 40.71 4.61
257 258 1.077787 GGGATGATGAACGCCCACA 60.078 57.895 0.00 0.00 40.39 4.17
258 259 1.376609 GGGATGATGAACGCCCACAC 61.377 60.000 0.00 0.00 40.39 3.82
259 260 1.705337 GGATGATGAACGCCCACACG 61.705 60.000 0.00 0.00 39.50 4.49
277 278 1.860709 CGTGCGGACGTTAACATTTC 58.139 50.000 22.12 0.00 40.91 2.17
278 279 1.462869 CGTGCGGACGTTAACATTTCC 60.463 52.381 22.12 7.07 40.91 3.13
298 299 5.705609 TCCGAAAAAGAAAAATCCTCCTG 57.294 39.130 0.00 0.00 0.00 3.86
404 405 1.685355 GCCTCTGCTTCCTCTCCCTC 61.685 65.000 0.00 0.00 33.53 4.30
406 407 1.692121 CCTCTGCTTCCTCTCCCTCAT 60.692 57.143 0.00 0.00 0.00 2.90
646 652 0.938008 CGACTGTCGATGATCCGAGA 59.062 55.000 24.86 0.00 43.74 4.04
680 686 2.560105 CTCCTTTTCCCTGCCAAAAGAG 59.440 50.000 6.50 0.37 41.52 2.85
682 688 2.965147 CCTTTTCCCTGCCAAAAGAGAA 59.035 45.455 6.50 0.00 41.52 2.87
683 689 3.387699 CCTTTTCCCTGCCAAAAGAGAAA 59.612 43.478 6.50 0.00 41.52 2.52
841 849 2.130395 GGAGCAAAAACTTTCAGCTGC 58.870 47.619 9.47 6.22 34.44 5.25
856 864 1.003696 AGCTGCTTACTTTGTCCCCTC 59.996 52.381 0.00 0.00 0.00 4.30
1034 1062 1.146930 CGGTGGACTATGCTGGCAT 59.853 57.895 12.76 12.76 40.19 4.40
1125 1153 9.597681 ATTGGATATGGAAATAAATCAAGAGCT 57.402 29.630 0.00 0.00 0.00 4.09
1140 1168 1.896465 AGAGCTACAGGTCACTTGGTC 59.104 52.381 10.78 0.00 44.42 4.02
1218 1246 7.845037 GGAAGAATCAATTCCAAGAGGATTTT 58.155 34.615 0.00 0.00 45.26 1.82
1251 1279 1.001378 AGTTTGCCGCATTTGACAGAC 60.001 47.619 0.00 0.00 0.00 3.51
1275 1303 1.191489 TTGATGTGGAGTCGAGGCCA 61.191 55.000 5.01 2.16 0.00 5.36
1278 1306 1.480212 ATGTGGAGTCGAGGCCAACA 61.480 55.000 5.01 8.78 35.63 3.33
1301 1329 4.070716 ACATTTTCTCTCAAGAGCAGGTG 58.929 43.478 1.99 2.47 41.80 4.00
1302 1330 4.202398 ACATTTTCTCTCAAGAGCAGGTGA 60.202 41.667 1.99 0.00 41.80 4.02
1304 1332 2.001076 TCTCTCAAGAGCAGGTGACA 57.999 50.000 1.99 0.00 41.80 3.58
1305 1333 2.319844 TCTCTCAAGAGCAGGTGACAA 58.680 47.619 1.99 0.00 41.80 3.18
1306 1334 2.700371 TCTCTCAAGAGCAGGTGACAAA 59.300 45.455 1.99 0.00 41.80 2.83
1307 1335 3.326006 TCTCTCAAGAGCAGGTGACAAAT 59.674 43.478 1.99 0.00 41.80 2.32
1308 1336 4.070716 CTCTCAAGAGCAGGTGACAAATT 58.929 43.478 0.00 0.00 35.13 1.82
1309 1337 4.464008 TCTCAAGAGCAGGTGACAAATTT 58.536 39.130 0.00 0.00 0.00 1.82
1310 1338 4.889409 TCTCAAGAGCAGGTGACAAATTTT 59.111 37.500 0.00 0.00 0.00 1.82
1311 1339 4.935702 TCAAGAGCAGGTGACAAATTTTG 58.064 39.130 7.59 7.59 0.00 2.44
1312 1340 3.375782 AGAGCAGGTGACAAATTTTGC 57.624 42.857 9.04 2.69 0.00 3.68
1313 1341 2.036346 AGAGCAGGTGACAAATTTTGCC 59.964 45.455 9.04 0.00 32.21 4.52
1314 1342 2.036346 GAGCAGGTGACAAATTTTGCCT 59.964 45.455 9.04 5.18 32.21 4.75
1315 1343 2.435437 AGCAGGTGACAAATTTTGCCTT 59.565 40.909 9.04 0.00 32.21 4.35
1316 1344 2.545106 GCAGGTGACAAATTTTGCCTTG 59.455 45.455 9.04 5.66 0.00 3.61
1587 1615 7.849804 TCTTTGGCTGTCTGAATATAGTTTC 57.150 36.000 0.00 0.00 0.00 2.78
1589 1617 7.882791 TCTTTGGCTGTCTGAATATAGTTTCAA 59.117 33.333 0.00 0.00 35.31 2.69
1614 1642 8.915871 ACTTTTAACATAAATGTAGCATGCTG 57.084 30.769 30.42 13.84 40.80 4.41
1616 1644 3.996150 ACATAAATGTAGCATGCTGCC 57.004 42.857 30.42 19.80 39.68 4.85
1836 1865 6.634436 GTGACAAACACTCTGCAAATTTCTAG 59.366 38.462 0.00 0.00 45.13 2.43
1862 1891 8.279800 GTGTTTACTTGTGCCAAATTATTTTCC 58.720 33.333 0.00 0.00 0.00 3.13
2009 2038 0.753262 ATGTCATCCGGCAGGTAGAC 59.247 55.000 18.08 18.08 40.31 2.59
2376 2429 5.967674 GTCGTCCAAAATATCAATCTTGCTG 59.032 40.000 0.00 0.00 0.00 4.41
2476 2529 6.398234 TGTTTACTACAAGGTGGTACGTTA 57.602 37.500 0.00 0.00 32.64 3.18
2482 2535 4.405116 ACAAGGTGGTACGTTAAAGACA 57.595 40.909 0.00 0.00 0.00 3.41
2596 2649 3.679980 GCTATACATGGCGAGGTATGTTG 59.320 47.826 15.14 7.27 38.41 3.33
2694 2747 0.520404 GGTCTCGCTCAACTACGACA 59.480 55.000 0.00 0.00 34.08 4.35
2713 2766 4.501400 CGACATAGTAGCATGGATTGTGGA 60.501 45.833 0.00 0.00 0.00 4.02
2747 2800 0.322098 TGTATGGGTGGAAGGTTGCG 60.322 55.000 0.00 0.00 0.00 4.85
2912 2965 3.373439 CAGCACAAAGAGCTATCAACTCC 59.627 47.826 0.00 0.00 41.14 3.85
2964 3017 3.005050 CCTCTCAGACTCTCATCTCATGC 59.995 52.174 0.00 0.00 0.00 4.06
2993 3048 2.938451 TCTGCAAGCGGACAATAGAATG 59.062 45.455 0.00 0.00 0.00 2.67
3245 3300 6.240549 TCCCTCTCCTCTGATTGATTTAAC 57.759 41.667 0.00 0.00 0.00 2.01
3252 3307 4.935205 CCTCTGATTGATTTAACACGTGGA 59.065 41.667 21.57 4.16 0.00 4.02
3608 3669 2.158475 TGCTTCAGGGAACATGGTTCTT 60.158 45.455 8.79 0.00 0.00 2.52
3784 3845 0.528924 TGAAGTACATCGACCCCACG 59.471 55.000 0.00 0.00 0.00 4.94
3817 3878 3.726517 GTGCGTGCCAATGCGTCT 61.727 61.111 0.00 0.00 41.56 4.18
3887 3948 0.813821 CTCTCGATCTGCCTGTGTCA 59.186 55.000 0.00 0.00 0.00 3.58
3914 3975 6.573357 GCAACAAGTTTTTGTGTTTTCTGTTC 59.427 34.615 3.82 0.00 46.54 3.18
3975 4036 3.615709 GGCGCCTTTGCAGGGTTT 61.616 61.111 22.15 0.00 41.21 3.27
4128 4189 5.529060 ACCTGACTTTTGTTGATCAGTTCTC 59.471 40.000 0.00 0.00 37.47 2.87
4184 4246 1.438651 CGGTGGTGTACAGGATTGTG 58.561 55.000 0.00 0.00 38.23 3.33
4226 4289 5.039920 TCCATCAGAAAGACATGGTATGG 57.960 43.478 0.00 0.00 38.62 2.74
4236 4299 5.129368 AGACATGGTATGGCCTGTAATTT 57.871 39.130 3.32 0.00 39.88 1.82
4248 4311 3.217626 CCTGTAATTTCTGGCTGATCCC 58.782 50.000 0.00 0.00 0.00 3.85
4256 4319 1.964608 CTGGCTGATCCCGAGCTCAA 61.965 60.000 15.40 0.00 36.63 3.02
4269 4332 1.681793 GAGCTCAACTGCTACCGGATA 59.318 52.381 9.46 0.00 44.17 2.59
4281 4344 7.558604 ACTGCTACCGGATAAACAGTAAATTA 58.441 34.615 9.46 0.00 36.65 1.40
4282 4345 8.042515 ACTGCTACCGGATAAACAGTAAATTAA 58.957 33.333 9.46 0.00 36.65 1.40
4311 4374 6.597262 CAACATATGCTACCGTTGTAATCA 57.403 37.500 1.58 0.00 35.21 2.57
4313 4376 6.785488 ACATATGCTACCGTTGTAATCATG 57.215 37.500 1.58 0.00 0.00 3.07
4314 4377 5.700832 ACATATGCTACCGTTGTAATCATGG 59.299 40.000 1.58 0.00 0.00 3.66
4315 4378 2.285083 TGCTACCGTTGTAATCATGGC 58.715 47.619 0.00 0.00 0.00 4.40
4316 4379 2.093181 TGCTACCGTTGTAATCATGGCT 60.093 45.455 0.00 0.00 0.00 4.75
4317 4380 2.287915 GCTACCGTTGTAATCATGGCTG 59.712 50.000 0.00 0.00 0.00 4.85
4318 4381 1.094785 ACCGTTGTAATCATGGCTGC 58.905 50.000 0.00 0.00 0.00 5.25
4321 4384 2.542205 CCGTTGTAATCATGGCTGCATG 60.542 50.000 0.50 3.94 0.00 4.06
4326 4389 3.312146 TGTAATCATGGCTGCATGTAACG 59.688 43.478 0.50 0.00 34.39 3.18
4327 4390 0.664761 ATCATGGCTGCATGTAACGC 59.335 50.000 0.50 0.00 34.39 4.84
4330 4393 0.887247 ATGGCTGCATGTAACGCAAA 59.113 45.000 0.50 0.00 39.30 3.68
4332 4395 0.240945 GGCTGCATGTAACGCAAACT 59.759 50.000 0.50 0.00 39.30 2.66
4333 4396 1.606606 GCTGCATGTAACGCAAACTC 58.393 50.000 0.00 0.00 39.30 3.01
4334 4397 1.197721 GCTGCATGTAACGCAAACTCT 59.802 47.619 0.00 0.00 39.30 3.24
4335 4398 2.415168 GCTGCATGTAACGCAAACTCTA 59.585 45.455 0.00 0.00 39.30 2.43
4336 4399 3.063997 GCTGCATGTAACGCAAACTCTAT 59.936 43.478 0.00 0.00 39.30 1.98
4338 4401 5.216566 TGCATGTAACGCAAACTCTATTC 57.783 39.130 0.00 0.00 36.17 1.75
4340 4403 5.063438 TGCATGTAACGCAAACTCTATTCTC 59.937 40.000 0.00 0.00 36.17 2.87
4341 4404 5.502544 GCATGTAACGCAAACTCTATTCTCC 60.503 44.000 0.00 0.00 0.00 3.71
4343 4406 5.790593 TGTAACGCAAACTCTATTCTCCTT 58.209 37.500 0.00 0.00 0.00 3.36
4346 4409 8.038944 TGTAACGCAAACTCTATTCTCCTTAAT 58.961 33.333 0.00 0.00 0.00 1.40
4347 4410 7.923414 AACGCAAACTCTATTCTCCTTAATT 57.077 32.000 0.00 0.00 0.00 1.40
4351 4414 9.869844 CGCAAACTCTATTCTCCTTAATTAATG 57.130 33.333 0.00 0.00 0.00 1.90
4360 4423 8.716674 ATTCTCCTTAATTAATGGATGTGCAT 57.283 30.769 13.46 0.00 0.00 3.96
4361 4424 7.514784 TCTCCTTAATTAATGGATGTGCATG 57.485 36.000 13.46 0.00 0.00 4.06
4363 4426 7.229306 TCTCCTTAATTAATGGATGTGCATGTC 59.771 37.037 13.46 0.00 0.00 3.06
4365 4428 7.560991 TCCTTAATTAATGGATGTGCATGTCTT 59.439 33.333 10.55 0.00 0.00 3.01
4366 4429 8.199449 CCTTAATTAATGGATGTGCATGTCTTT 58.801 33.333 0.00 0.00 0.00 2.52
4368 4431 7.837202 AATTAATGGATGTGCATGTCTTTTG 57.163 32.000 0.00 0.00 0.00 2.44
4371 4434 1.547372 GGATGTGCATGTCTTTTGCCT 59.453 47.619 0.00 0.00 39.39 4.75
4372 4435 2.416431 GGATGTGCATGTCTTTTGCCTC 60.416 50.000 0.00 0.00 39.39 4.70
4373 4436 1.985473 TGTGCATGTCTTTTGCCTCT 58.015 45.000 0.00 0.00 39.39 3.69
4374 4437 1.610038 TGTGCATGTCTTTTGCCTCTG 59.390 47.619 0.00 0.00 39.39 3.35
4376 4439 1.881973 TGCATGTCTTTTGCCTCTGTC 59.118 47.619 0.00 0.00 39.39 3.51
4377 4440 2.157738 GCATGTCTTTTGCCTCTGTCT 58.842 47.619 0.00 0.00 33.95 3.41
4378 4441 2.161211 GCATGTCTTTTGCCTCTGTCTC 59.839 50.000 0.00 0.00 33.95 3.36
4380 4443 3.558931 TGTCTTTTGCCTCTGTCTCAA 57.441 42.857 0.00 0.00 0.00 3.02
4381 4444 3.470709 TGTCTTTTGCCTCTGTCTCAAG 58.529 45.455 0.00 0.00 0.00 3.02
4382 4445 3.134623 TGTCTTTTGCCTCTGTCTCAAGA 59.865 43.478 0.00 0.00 0.00 3.02
4383 4446 4.130118 GTCTTTTGCCTCTGTCTCAAGAA 58.870 43.478 0.00 0.00 0.00 2.52
4386 4449 4.900635 TTTGCCTCTGTCTCAAGAAAAC 57.099 40.909 0.00 0.00 0.00 2.43
4394 4457 6.347240 CCTCTGTCTCAAGAAAACAAATCTCG 60.347 42.308 0.00 0.00 0.00 4.04
4402 4465 4.232221 AGAAAACAAATCTCGCATTGCAG 58.768 39.130 9.69 5.69 0.00 4.41
4422 4537 5.051891 CAGTTCTGTTATCTGCAAAAGGG 57.948 43.478 0.00 0.00 0.00 3.95
4423 4538 3.507622 AGTTCTGTTATCTGCAAAAGGGC 59.492 43.478 0.00 0.00 0.00 5.19
4425 4540 3.700538 TCTGTTATCTGCAAAAGGGCAT 58.299 40.909 0.00 0.00 43.97 4.40
4427 4542 2.496871 TGTTATCTGCAAAAGGGCATGG 59.503 45.455 0.00 0.00 43.97 3.66
4429 4544 1.481871 ATCTGCAAAAGGGCATGGAG 58.518 50.000 0.00 0.00 43.97 3.86
4430 4545 0.612732 TCTGCAAAAGGGCATGGAGG 60.613 55.000 0.00 0.00 43.97 4.30
4432 4547 0.471591 TGCAAAAGGGCATGGAGGTT 60.472 50.000 0.00 0.00 39.25 3.50
4433 4548 0.686789 GCAAAAGGGCATGGAGGTTT 59.313 50.000 0.00 0.00 0.00 3.27
4435 4550 2.871637 GCAAAAGGGCATGGAGGTTTTC 60.872 50.000 0.00 0.00 0.00 2.29
4436 4551 1.644509 AAAGGGCATGGAGGTTTTCC 58.355 50.000 0.00 0.00 46.98 3.13
4468 4588 4.418013 TTTCATGTATTGTGCCAGAACG 57.582 40.909 0.00 0.00 0.00 3.95
4523 4644 6.761312 TGGCAAAAATGATCAAAGATGTCTT 58.239 32.000 0.00 0.00 37.91 3.01
4524 4645 7.894708 TGGCAAAAATGATCAAAGATGTCTTA 58.105 30.769 0.00 0.00 34.61 2.10
4533 4654 8.044060 TGATCAAAGATGTCTTACCATTTGAC 57.956 34.615 0.00 0.00 34.61 3.18
4545 4672 2.639839 ACCATTTGACTACAGCCAGACT 59.360 45.455 0.00 0.00 0.00 3.24
4577 4704 8.274322 TGCCTCTAATTTCTTCTGATCCAAATA 58.726 33.333 0.00 0.00 0.00 1.40
4608 4735 3.459232 AAGCTCAAAGAAAAAGGGCAC 57.541 42.857 0.00 0.00 0.00 5.01
4610 4737 2.363359 AGCTCAAAGAAAAAGGGCACTG 59.637 45.455 0.00 0.00 0.00 3.66
4617 4748 2.439135 AGAAAAAGGGCACTGGCAAAAT 59.561 40.909 4.78 0.00 43.71 1.82
4634 4765 6.823678 GCAAAATAGAATCAAAGATGCCAG 57.176 37.500 0.00 0.00 0.00 4.85
4640 4771 2.502142 ATCAAAGATGCCAGCAGACA 57.498 45.000 0.00 0.00 0.00 3.41
4641 4772 1.817357 TCAAAGATGCCAGCAGACAG 58.183 50.000 0.00 0.00 0.00 3.51
4644 4775 0.322277 AAGATGCCAGCAGACAGGTG 60.322 55.000 0.00 0.00 45.23 4.00
4656 4831 3.433615 GCAGACAGGTGCACTTTAACTAG 59.566 47.826 17.98 0.00 43.41 2.57
4801 4992 4.700213 CCTGAATGGGTTGTAAGTTAGTGG 59.300 45.833 0.00 0.00 0.00 4.00
4832 5023 5.799213 ACTCAAAATGGTAGAGAAGGTGAG 58.201 41.667 0.00 0.00 36.80 3.51
4848 5039 2.030363 GGTGAGACGATGCTATGGAGAG 60.030 54.545 0.00 0.00 0.00 3.20
4872 5063 6.936900 AGTTACGGATATAGGCTCGTACTAAA 59.063 38.462 5.07 0.00 37.74 1.85
4973 5177 1.247567 GGACCTGTTTGTGATGTGGG 58.752 55.000 0.00 0.00 0.00 4.61
4974 5178 0.598065 GACCTGTTTGTGATGTGGGC 59.402 55.000 0.00 0.00 0.00 5.36
4975 5179 0.827507 ACCTGTTTGTGATGTGGGCC 60.828 55.000 0.00 0.00 0.00 5.80
4976 5180 1.535204 CCTGTTTGTGATGTGGGCCC 61.535 60.000 17.59 17.59 0.00 5.80
4977 5181 1.532794 TGTTTGTGATGTGGGCCCC 60.533 57.895 22.27 11.72 0.00 5.80
5016 5220 7.087639 GCCTTAGCTATCTATCTACTTGTGTG 58.912 42.308 0.00 0.00 35.50 3.82
5046 5258 5.388944 GTGAACTTGATCAATCTGCAGTTC 58.611 41.667 21.13 21.13 38.32 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.329545 TTCGCACACCTCTGCCCC 62.330 66.667 0.00 0.00 33.18 5.80
2 3 2.743928 CTTCGCACACCTCTGCCC 60.744 66.667 0.00 0.00 33.18 5.36
3 4 2.031163 ACTTCGCACACCTCTGCC 59.969 61.111 0.00 0.00 33.18 4.85
4 5 1.160329 AACACTTCGCACACCTCTGC 61.160 55.000 0.00 0.00 0.00 4.26
5 6 1.003545 CAAACACTTCGCACACCTCTG 60.004 52.381 0.00 0.00 0.00 3.35
6 7 1.134521 TCAAACACTTCGCACACCTCT 60.135 47.619 0.00 0.00 0.00 3.69
7 8 1.003866 GTCAAACACTTCGCACACCTC 60.004 52.381 0.00 0.00 0.00 3.85
8 9 1.014352 GTCAAACACTTCGCACACCT 58.986 50.000 0.00 0.00 0.00 4.00
9 10 0.315869 CGTCAAACACTTCGCACACC 60.316 55.000 0.00 0.00 0.00 4.16
10 11 0.648441 TCGTCAAACACTTCGCACAC 59.352 50.000 0.00 0.00 0.00 3.82
11 12 0.648441 GTCGTCAAACACTTCGCACA 59.352 50.000 0.00 0.00 0.00 4.57
12 13 0.648441 TGTCGTCAAACACTTCGCAC 59.352 50.000 0.00 0.00 0.00 5.34
13 14 1.061421 GTTGTCGTCAAACACTTCGCA 59.939 47.619 0.00 0.00 35.20 5.10
14 15 1.593793 GGTTGTCGTCAAACACTTCGC 60.594 52.381 5.53 0.00 40.61 4.70
15 16 1.331680 CGGTTGTCGTCAAACACTTCG 60.332 52.381 10.93 0.00 40.92 3.79
16 17 1.593793 GCGGTTGTCGTCAAACACTTC 60.594 52.381 10.93 0.00 40.92 3.01
17 18 0.375803 GCGGTTGTCGTCAAACACTT 59.624 50.000 10.93 0.00 40.92 3.16
18 19 1.758319 CGCGGTTGTCGTCAAACACT 61.758 55.000 10.93 0.00 40.92 3.55
19 20 1.367195 CGCGGTTGTCGTCAAACAC 60.367 57.895 10.93 0.00 40.92 3.32
20 21 2.526993 CCGCGGTTGTCGTCAAACA 61.527 57.895 19.50 0.00 40.92 2.83
21 22 2.247267 CCGCGGTTGTCGTCAAAC 59.753 61.111 19.50 0.00 41.72 2.93
22 23 2.202905 ACCGCGGTTGTCGTCAAA 60.203 55.556 28.70 0.00 41.72 2.69
23 24 2.659244 GACCGCGGTTGTCGTCAA 60.659 61.111 34.65 0.00 41.72 3.18
53 54 3.941836 GAACTGCTATGCGCCCGC 61.942 66.667 4.18 5.60 42.35 6.13
54 55 3.272334 GGAACTGCTATGCGCCCG 61.272 66.667 4.18 0.00 38.05 6.13
55 56 2.124736 TGGAACTGCTATGCGCCC 60.125 61.111 4.18 0.00 38.05 6.13
56 57 2.472909 GGTGGAACTGCTATGCGCC 61.473 63.158 4.18 0.00 38.05 6.53
57 58 2.813179 CGGTGGAACTGCTATGCGC 61.813 63.158 0.00 0.00 35.75 6.09
58 59 3.398920 CGGTGGAACTGCTATGCG 58.601 61.111 0.00 0.00 35.75 4.73
66 67 4.681978 GAGGCGTGCGGTGGAACT 62.682 66.667 0.00 0.00 36.74 3.01
81 82 4.379243 AGCGGTTGCCACTCGGAG 62.379 66.667 2.83 2.83 44.31 4.63
82 83 4.680237 CAGCGGTTGCCACTCGGA 62.680 66.667 0.00 0.00 44.31 4.55
83 84 4.680237 TCAGCGGTTGCCACTCGG 62.680 66.667 0.00 0.00 44.31 4.63
84 85 3.414700 GTCAGCGGTTGCCACTCG 61.415 66.667 0.00 0.00 44.31 4.18
85 86 3.050275 GGTCAGCGGTTGCCACTC 61.050 66.667 0.00 0.00 44.31 3.51
86 87 4.988598 CGGTCAGCGGTTGCCACT 62.989 66.667 5.26 0.00 44.31 4.00
97 98 4.776322 TTGCCATCCCGCGGTCAG 62.776 66.667 26.12 12.70 0.00 3.51
102 103 4.114997 GTTGGTTGCCATCCCGCG 62.115 66.667 0.00 0.00 31.53 6.46
103 104 4.114997 CGTTGGTTGCCATCCCGC 62.115 66.667 0.00 0.00 31.53 6.13
104 105 2.671619 ACGTTGGTTGCCATCCCG 60.672 61.111 0.00 0.00 31.53 5.14
105 106 2.961768 CACGTTGGTTGCCATCCC 59.038 61.111 0.00 0.00 31.53 3.85
106 107 2.258286 GCACGTTGGTTGCCATCC 59.742 61.111 0.00 0.00 31.53 3.51
107 108 2.126888 CGCACGTTGGTTGCCATC 60.127 61.111 0.00 0.00 31.53 3.51
108 109 3.669344 CCGCACGTTGGTTGCCAT 61.669 61.111 0.00 0.00 31.53 4.40
116 117 4.368808 CAGTTCGCCCGCACGTTG 62.369 66.667 0.00 0.00 0.00 4.10
117 118 4.595538 TCAGTTCGCCCGCACGTT 62.596 61.111 0.00 0.00 0.00 3.99
120 121 3.112709 GAGTCAGTTCGCCCGCAC 61.113 66.667 0.00 0.00 0.00 5.34
121 122 4.717629 CGAGTCAGTTCGCCCGCA 62.718 66.667 0.00 0.00 33.39 5.69
127 128 2.365068 CGGTGTGCGAGTCAGTTCG 61.365 63.158 0.00 0.00 43.23 3.95
128 129 2.658707 GCGGTGTGCGAGTCAGTTC 61.659 63.158 0.00 0.00 0.00 3.01
129 130 2.661866 GCGGTGTGCGAGTCAGTT 60.662 61.111 0.00 0.00 0.00 3.16
151 152 4.849329 CCACGTAGGACGAGGCGC 62.849 72.222 5.94 0.00 44.58 6.53
155 156 1.154016 CTGTGCCACGTAGGACGAG 60.154 63.158 5.94 0.00 46.05 4.18
156 157 1.174078 TTCTGTGCCACGTAGGACGA 61.174 55.000 5.94 0.00 46.05 4.20
158 159 1.529865 GTTTTCTGTGCCACGTAGGAC 59.470 52.381 0.00 0.00 41.22 3.85
159 160 1.541670 GGTTTTCTGTGCCACGTAGGA 60.542 52.381 8.04 0.00 41.22 2.94
160 161 0.872388 GGTTTTCTGTGCCACGTAGG 59.128 55.000 0.00 0.00 41.84 3.18
161 162 0.511221 CGGTTTTCTGTGCCACGTAG 59.489 55.000 0.00 0.00 0.00 3.51
162 163 0.881159 CCGGTTTTCTGTGCCACGTA 60.881 55.000 0.00 0.00 0.00 3.57
163 164 2.184167 CCGGTTTTCTGTGCCACGT 61.184 57.895 0.00 0.00 0.00 4.49
164 165 2.637025 CCGGTTTTCTGTGCCACG 59.363 61.111 0.00 0.00 0.00 4.94
165 166 2.335011 GCCGGTTTTCTGTGCCAC 59.665 61.111 1.90 0.00 0.00 5.01
166 167 2.909965 GGCCGGTTTTCTGTGCCA 60.910 61.111 1.90 0.00 40.12 4.92
167 168 4.038080 CGGCCGGTTTTCTGTGCC 62.038 66.667 20.10 0.00 38.37 5.01
168 169 4.038080 CCGGCCGGTTTTCTGTGC 62.038 66.667 36.64 0.00 0.00 4.57
178 179 1.007849 CTTGAAACAAACCGGCCGG 60.008 57.895 42.17 42.17 42.03 6.13
179 180 0.596082 ATCTTGAAACAAACCGGCCG 59.404 50.000 21.04 21.04 0.00 6.13
180 181 2.035321 TGAATCTTGAAACAAACCGGCC 59.965 45.455 0.00 0.00 0.00 6.13
181 182 3.363341 TGAATCTTGAAACAAACCGGC 57.637 42.857 0.00 0.00 0.00 6.13
182 183 3.674753 GCATGAATCTTGAAACAAACCGG 59.325 43.478 0.00 0.00 0.00 5.28
183 184 4.148696 GTGCATGAATCTTGAAACAAACCG 59.851 41.667 0.00 0.00 0.00 4.44
184 185 5.049167 TGTGCATGAATCTTGAAACAAACC 58.951 37.500 0.00 0.00 0.00 3.27
185 186 6.586868 TTGTGCATGAATCTTGAAACAAAC 57.413 33.333 0.00 0.00 0.00 2.93
186 187 6.817641 ACTTTGTGCATGAATCTTGAAACAAA 59.182 30.769 19.36 19.36 34.19 2.83
187 188 6.339730 ACTTTGTGCATGAATCTTGAAACAA 58.660 32.000 0.00 11.17 0.00 2.83
188 189 5.904941 ACTTTGTGCATGAATCTTGAAACA 58.095 33.333 0.00 1.45 0.00 2.83
189 190 6.642917 CAACTTTGTGCATGAATCTTGAAAC 58.357 36.000 0.00 0.00 0.00 2.78
190 191 5.234757 GCAACTTTGTGCATGAATCTTGAAA 59.765 36.000 0.00 0.00 44.29 2.69
191 192 4.746115 GCAACTTTGTGCATGAATCTTGAA 59.254 37.500 0.00 0.00 44.29 2.69
192 193 4.300803 GCAACTTTGTGCATGAATCTTGA 58.699 39.130 0.00 0.00 44.29 3.02
193 194 3.430895 GGCAACTTTGTGCATGAATCTTG 59.569 43.478 0.00 0.00 46.81 3.02
194 195 3.069872 TGGCAACTTTGTGCATGAATCTT 59.930 39.130 0.00 0.00 46.81 2.40
195 196 2.629137 TGGCAACTTTGTGCATGAATCT 59.371 40.909 0.00 0.00 46.81 2.40
196 197 3.029320 TGGCAACTTTGTGCATGAATC 57.971 42.857 0.00 0.00 46.81 2.52
197 198 3.132925 GTTGGCAACTTTGTGCATGAAT 58.867 40.909 22.66 0.00 46.81 2.57
198 199 2.548875 GTTGGCAACTTTGTGCATGAA 58.451 42.857 22.66 0.00 46.81 2.57
199 200 1.535649 CGTTGGCAACTTTGTGCATGA 60.536 47.619 26.26 0.00 46.81 3.07
200 201 0.854062 CGTTGGCAACTTTGTGCATG 59.146 50.000 26.26 5.35 46.81 4.06
201 202 0.743688 TCGTTGGCAACTTTGTGCAT 59.256 45.000 26.26 0.00 46.81 3.96
202 203 0.528017 TTCGTTGGCAACTTTGTGCA 59.472 45.000 26.26 0.00 46.81 4.57
203 204 1.199624 CTTCGTTGGCAACTTTGTGC 58.800 50.000 26.26 0.19 44.14 4.57
204 205 2.842208 TCTTCGTTGGCAACTTTGTG 57.158 45.000 26.26 11.77 37.61 3.33
205 206 2.543653 GCATCTTCGTTGGCAACTTTGT 60.544 45.455 26.26 7.44 37.61 2.83
206 207 2.053627 GCATCTTCGTTGGCAACTTTG 58.946 47.619 26.26 16.46 37.61 2.77
207 208 1.956477 AGCATCTTCGTTGGCAACTTT 59.044 42.857 26.26 5.35 37.61 2.66
208 209 1.609208 AGCATCTTCGTTGGCAACTT 58.391 45.000 26.26 5.02 37.61 2.66
209 210 1.267806 CAAGCATCTTCGTTGGCAACT 59.732 47.619 26.26 6.02 37.61 3.16
210 211 1.689959 CAAGCATCTTCGTTGGCAAC 58.310 50.000 20.27 20.27 0.00 4.17
211 212 0.039256 GCAAGCATCTTCGTTGGCAA 60.039 50.000 0.00 0.00 0.00 4.52
212 213 1.580942 GCAAGCATCTTCGTTGGCA 59.419 52.632 0.00 0.00 0.00 4.92
213 214 1.512734 CGCAAGCATCTTCGTTGGC 60.513 57.895 0.00 0.00 0.00 4.52
214 215 0.453282 CACGCAAGCATCTTCGTTGG 60.453 55.000 0.00 0.00 45.62 3.77
215 216 0.235665 ACACGCAAGCATCTTCGTTG 59.764 50.000 0.00 0.00 45.62 4.10
216 217 0.235665 CACACGCAAGCATCTTCGTT 59.764 50.000 0.00 0.00 45.62 3.85
217 218 1.568612 CCACACGCAAGCATCTTCGT 61.569 55.000 0.00 0.00 45.62 3.85
218 219 1.133253 CCACACGCAAGCATCTTCG 59.867 57.895 0.00 0.00 45.62 3.79
219 220 0.166814 GACCACACGCAAGCATCTTC 59.833 55.000 0.00 0.00 45.62 2.87
220 221 1.568612 CGACCACACGCAAGCATCTT 61.569 55.000 0.00 0.00 45.62 2.40
221 222 2.029288 CGACCACACGCAAGCATCT 61.029 57.895 0.00 0.00 45.62 2.90
222 223 2.476051 CGACCACACGCAAGCATC 59.524 61.111 0.00 0.00 45.62 3.91
223 224 3.049674 CCGACCACACGCAAGCAT 61.050 61.111 0.00 0.00 45.62 3.79
225 226 4.980805 TCCCGACCACACGCAAGC 62.981 66.667 0.00 0.00 45.62 4.01
227 228 2.178876 ATCATCCCGACCACACGCAA 62.179 55.000 0.00 0.00 0.00 4.85
228 229 2.655073 ATCATCCCGACCACACGCA 61.655 57.895 0.00 0.00 0.00 5.24
229 230 2.173669 CATCATCCCGACCACACGC 61.174 63.158 0.00 0.00 0.00 5.34
230 231 0.108377 TTCATCATCCCGACCACACG 60.108 55.000 0.00 0.00 0.00 4.49
231 232 1.369625 GTTCATCATCCCGACCACAC 58.630 55.000 0.00 0.00 0.00 3.82
232 233 0.108377 CGTTCATCATCCCGACCACA 60.108 55.000 0.00 0.00 0.00 4.17
233 234 1.429148 GCGTTCATCATCCCGACCAC 61.429 60.000 0.00 0.00 0.00 4.16
234 235 1.153449 GCGTTCATCATCCCGACCA 60.153 57.895 0.00 0.00 0.00 4.02
235 236 1.887707 GGCGTTCATCATCCCGACC 60.888 63.158 0.00 0.00 0.00 4.79
236 237 1.887707 GGGCGTTCATCATCCCGAC 60.888 63.158 0.00 0.00 0.00 4.79
237 238 2.363172 TGGGCGTTCATCATCCCGA 61.363 57.895 0.00 0.00 41.65 5.14
238 239 2.180204 GTGGGCGTTCATCATCCCG 61.180 63.158 0.00 0.00 41.65 5.14
239 240 1.077787 TGTGGGCGTTCATCATCCC 60.078 57.895 0.00 0.00 39.22 3.85
240 241 1.705337 CGTGTGGGCGTTCATCATCC 61.705 60.000 0.00 0.00 0.00 3.51
241 242 1.019278 ACGTGTGGGCGTTCATCATC 61.019 55.000 0.00 0.00 43.04 2.92
242 243 1.003839 ACGTGTGGGCGTTCATCAT 60.004 52.632 0.00 0.00 43.04 2.45
243 244 1.958715 CACGTGTGGGCGTTCATCA 60.959 57.895 7.58 0.00 43.83 3.07
244 245 2.860293 CACGTGTGGGCGTTCATC 59.140 61.111 7.58 0.00 43.83 2.92
245 246 3.353836 GCACGTGTGGGCGTTCAT 61.354 61.111 18.38 0.00 43.83 2.57
259 260 1.462869 CGGAAATGTTAACGTCCGCAC 60.463 52.381 23.72 6.66 45.74 5.34
260 261 0.791422 CGGAAATGTTAACGTCCGCA 59.209 50.000 23.72 0.00 45.74 5.69
261 262 3.573515 CGGAAATGTTAACGTCCGC 57.426 52.632 23.72 8.46 45.74 5.54
263 264 5.750650 TCTTTTTCGGAAATGTTAACGTCC 58.249 37.500 3.67 6.74 0.00 4.79
264 265 7.667984 TTTCTTTTTCGGAAATGTTAACGTC 57.332 32.000 3.67 0.00 0.00 4.34
265 266 8.463456 TTTTTCTTTTTCGGAAATGTTAACGT 57.537 26.923 3.67 0.00 33.51 3.99
266 267 9.562752 GATTTTTCTTTTTCGGAAATGTTAACG 57.437 29.630 3.67 0.00 33.51 3.18
267 268 9.858247 GGATTTTTCTTTTTCGGAAATGTTAAC 57.142 29.630 3.67 0.00 33.51 2.01
268 269 9.825109 AGGATTTTTCTTTTTCGGAAATGTTAA 57.175 25.926 3.67 0.00 33.51 2.01
269 270 9.471084 GAGGATTTTTCTTTTTCGGAAATGTTA 57.529 29.630 3.67 0.00 33.51 2.41
270 271 7.441157 GGAGGATTTTTCTTTTTCGGAAATGTT 59.559 33.333 3.67 0.00 33.51 2.71
271 272 6.929049 GGAGGATTTTTCTTTTTCGGAAATGT 59.071 34.615 3.67 0.00 33.51 2.71
272 273 7.116805 CAGGAGGATTTTTCTTTTTCGGAAATG 59.883 37.037 3.67 0.00 33.51 2.32
273 274 7.154656 CAGGAGGATTTTTCTTTTTCGGAAAT 58.845 34.615 3.67 0.00 33.51 2.17
274 275 6.462347 CCAGGAGGATTTTTCTTTTTCGGAAA 60.462 38.462 0.00 0.00 36.89 3.13
275 276 5.010617 CCAGGAGGATTTTTCTTTTTCGGAA 59.989 40.000 0.00 0.00 36.89 4.30
276 277 4.522789 CCAGGAGGATTTTTCTTTTTCGGA 59.477 41.667 0.00 0.00 36.89 4.55
277 278 4.280929 ACCAGGAGGATTTTTCTTTTTCGG 59.719 41.667 0.00 0.00 38.69 4.30
278 279 5.453567 ACCAGGAGGATTTTTCTTTTTCG 57.546 39.130 0.00 0.00 38.69 3.46
279 280 7.055667 AGAACCAGGAGGATTTTTCTTTTTC 57.944 36.000 0.00 0.00 38.69 2.29
298 299 2.202453 GAGACCGCGACGAGAACC 60.202 66.667 8.23 0.00 0.00 3.62
404 405 4.375005 CGCACGTGTTATAGAATCGGAATG 60.375 45.833 18.38 0.00 0.00 2.67
406 407 3.110358 CGCACGTGTTATAGAATCGGAA 58.890 45.455 18.38 0.00 0.00 4.30
596 602 4.419522 GCCAACCATCGCGATTTTATAT 57.580 40.909 21.14 0.00 0.00 0.86
662 668 4.371786 GTTTCTCTTTTGGCAGGGAAAAG 58.628 43.478 2.23 2.89 43.48 2.27
667 673 0.969149 GGGTTTCTCTTTTGGCAGGG 59.031 55.000 0.00 0.00 0.00 4.45
680 686 1.274011 TGAGTAGGGGGTAGGGGTTTC 60.274 57.143 0.00 0.00 0.00 2.78
682 688 0.043788 GTGAGTAGGGGGTAGGGGTT 59.956 60.000 0.00 0.00 0.00 4.11
683 689 1.157641 TGTGAGTAGGGGGTAGGGGT 61.158 60.000 0.00 0.00 0.00 4.95
841 849 1.282157 CAGGGGAGGGGACAAAGTAAG 59.718 57.143 0.00 0.00 0.00 2.34
1034 1062 4.890158 TGCCTCTGACTTGAAGTGATTA 57.110 40.909 0.90 0.00 0.00 1.75
1125 1153 1.611977 CTGACGACCAAGTGACCTGTA 59.388 52.381 0.00 0.00 0.00 2.74
1126 1154 0.389391 CTGACGACCAAGTGACCTGT 59.611 55.000 0.00 0.00 0.00 4.00
1140 1168 2.686602 CATGGACATGGCTCTGACG 58.313 57.895 0.00 0.00 35.24 4.35
1218 1246 1.448985 GCAAACTGAACCGCCTATCA 58.551 50.000 0.00 0.00 0.00 2.15
1251 1279 3.496130 GCCTCGACTCCACATCAATTATG 59.504 47.826 0.00 0.00 41.74 1.90
1266 1294 2.293399 AGAAAATGTTGTTGGCCTCGAC 59.707 45.455 3.32 8.09 0.00 4.20
1275 1303 5.009410 CCTGCTCTTGAGAGAAAATGTTGTT 59.991 40.000 12.07 0.00 44.74 2.83
1278 1306 4.518211 CACCTGCTCTTGAGAGAAAATGTT 59.482 41.667 12.07 0.00 44.74 2.71
1301 1329 5.007921 ACAGAAATGCAAGGCAAAATTTGTC 59.992 36.000 1.48 1.48 43.62 3.18
1302 1330 4.883006 ACAGAAATGCAAGGCAAAATTTGT 59.117 33.333 7.60 0.00 43.62 2.83
1304 1332 5.370679 AGACAGAAATGCAAGGCAAAATTT 58.629 33.333 0.00 0.00 43.62 1.82
1305 1333 4.964593 AGACAGAAATGCAAGGCAAAATT 58.035 34.783 0.00 0.00 43.62 1.82
1306 1334 4.612264 AGACAGAAATGCAAGGCAAAAT 57.388 36.364 0.00 0.00 43.62 1.82
1307 1335 5.528043 TTAGACAGAAATGCAAGGCAAAA 57.472 34.783 0.00 0.00 43.62 2.44
1308 1336 5.472148 CATTAGACAGAAATGCAAGGCAAA 58.528 37.500 0.00 0.00 43.62 3.68
1309 1337 5.063180 CATTAGACAGAAATGCAAGGCAA 57.937 39.130 0.00 0.00 43.62 4.52
1310 1338 4.707030 CATTAGACAGAAATGCAAGGCA 57.293 40.909 0.00 0.00 44.86 4.75
1530 1558 6.332976 AGTAATTGATGGGGAGTTTGATCT 57.667 37.500 0.00 0.00 0.00 2.75
1587 1615 9.357652 AGCATGCTACATTTATGTTAAAAGTTG 57.642 29.630 21.21 0.00 41.97 3.16
1589 1617 8.915871 CAGCATGCTACATTTATGTTAAAAGT 57.084 30.769 22.19 0.00 41.97 2.66
1862 1891 2.138320 ACATGAGTTTGTGTGAGCTCG 58.862 47.619 9.64 0.00 0.00 5.03
2009 2038 7.701924 GTCAGAGATCAACTCATCAAGTTCTAG 59.298 40.741 0.00 0.00 45.28 2.43
2092 2121 6.550854 TGGGAATTGTGTTTTCTTCAAGAGAT 59.449 34.615 0.00 0.00 33.49 2.75
2376 2429 1.663379 GAAATACTTGCCCCGCCACC 61.663 60.000 0.00 0.00 0.00 4.61
2476 2529 6.712095 TGCAGAAATCAAGTCAGTATGTCTTT 59.288 34.615 0.00 0.00 41.58 2.52
2482 2535 6.094603 GTGGATTGCAGAAATCAAGTCAGTAT 59.905 38.462 3.34 0.00 45.69 2.12
2596 2649 6.128688 GCTCTGACGCAAGGAAGATATAAATC 60.129 42.308 0.00 0.00 46.39 2.17
2690 2743 3.742882 CCACAATCCATGCTACTATGTCG 59.257 47.826 0.00 0.00 0.00 4.35
2694 2747 7.170965 CCTAATTCCACAATCCATGCTACTAT 58.829 38.462 0.00 0.00 0.00 2.12
2713 2766 6.012508 CCACCCATACATACTGATCCCTAATT 60.013 42.308 0.00 0.00 0.00 1.40
2747 2800 8.283291 CCAAAAGAAACAGTCAGACATAAGTAC 58.717 37.037 2.66 0.00 0.00 2.73
2912 2965 9.764870 CTAAAATGAATCACCTCAATATATGCG 57.235 33.333 0.00 0.00 0.00 4.73
2964 3017 1.787155 GTCCGCTTGCAGATATGTACG 59.213 52.381 0.00 0.00 0.00 3.67
3252 3307 6.070824 GGTGAATGGTACCTTCATTTGGATTT 60.071 38.462 21.85 0.00 35.26 2.17
3418 3474 0.737219 CCTCATGCTGGCAGTTAAGC 59.263 55.000 17.16 2.10 39.96 3.09
3608 3669 2.882927 GGTGCACACCGATATCACTA 57.117 50.000 20.43 0.00 42.29 2.74
3814 3875 0.393402 TGCACAGGATGGCATCAGAC 60.393 55.000 27.39 16.31 43.62 3.51
3817 3878 1.746239 CGTGCACAGGATGGCATCA 60.746 57.895 27.39 5.00 42.55 3.07
3887 3948 4.747605 AGAAAACACAAAAACTTGTTGCGT 59.252 33.333 0.00 0.00 36.08 5.24
3914 3975 2.485124 GGGACCAATGCTCATCTCAGAG 60.485 54.545 0.00 0.00 38.68 3.35
3975 4036 2.125310 CCGGTTGTGATGCCGCTA 60.125 61.111 0.00 0.00 45.98 4.26
4014 4075 4.650972 AACTTCAGGTATTGGCAGGTAA 57.349 40.909 0.00 0.00 0.00 2.85
4128 4189 3.963383 AGTTTACAAACTTGGCTGTCG 57.037 42.857 1.47 0.00 46.52 4.35
4184 4246 8.084073 TGATGGAAGACAAAAAGAATGACATTC 58.916 33.333 18.71 18.71 39.56 2.67
4236 4299 2.042537 AGCTCGGGATCAGCCAGA 60.043 61.111 0.00 0.00 38.62 3.86
4248 4311 1.517257 CCGGTAGCAGTTGAGCTCG 60.517 63.158 9.64 0.00 45.26 5.03
4256 4319 5.410355 TTTACTGTTTATCCGGTAGCAGT 57.590 39.130 20.13 20.13 39.93 4.40
4288 4351 6.597262 TGATTACAACGGTAGCATATGTTG 57.403 37.500 4.29 8.33 42.11 3.33
4291 4354 5.390885 GCCATGATTACAACGGTAGCATATG 60.391 44.000 0.00 0.00 30.21 1.78
4293 4356 4.062293 GCCATGATTACAACGGTAGCATA 58.938 43.478 0.00 0.00 30.21 3.14
4297 4360 2.287915 GCAGCCATGATTACAACGGTAG 59.712 50.000 0.00 0.00 0.00 3.18
4298 4361 2.285083 GCAGCCATGATTACAACGGTA 58.715 47.619 0.00 0.00 0.00 4.02
4299 4362 1.094785 GCAGCCATGATTACAACGGT 58.905 50.000 0.00 0.00 0.00 4.83
4311 4374 0.887247 TTTGCGTTACATGCAGCCAT 59.113 45.000 0.00 0.00 41.69 4.40
4313 4376 0.240945 AGTTTGCGTTACATGCAGCC 59.759 50.000 0.00 0.00 41.69 4.85
4314 4377 1.197721 AGAGTTTGCGTTACATGCAGC 59.802 47.619 0.00 0.00 41.69 5.25
4315 4378 4.864916 ATAGAGTTTGCGTTACATGCAG 57.135 40.909 0.00 0.00 41.69 4.41
4316 4379 4.935205 AGAATAGAGTTTGCGTTACATGCA 59.065 37.500 0.00 0.00 38.54 3.96
4317 4380 5.470845 AGAATAGAGTTTGCGTTACATGC 57.529 39.130 0.00 0.00 0.00 4.06
4318 4381 5.812642 AGGAGAATAGAGTTTGCGTTACATG 59.187 40.000 0.00 0.00 0.00 3.21
4321 4384 7.823149 TTAAGGAGAATAGAGTTTGCGTTAC 57.177 36.000 0.00 0.00 0.00 2.50
4332 4395 9.507329 GCACATCCATTAATTAAGGAGAATAGA 57.493 33.333 11.32 0.00 34.40 1.98
4333 4396 9.288576 TGCACATCCATTAATTAAGGAGAATAG 57.711 33.333 11.32 5.00 34.40 1.73
4334 4397 9.812347 ATGCACATCCATTAATTAAGGAGAATA 57.188 29.630 11.32 3.46 34.40 1.75
4335 4398 8.582437 CATGCACATCCATTAATTAAGGAGAAT 58.418 33.333 11.32 0.06 34.40 2.40
4336 4399 7.560991 ACATGCACATCCATTAATTAAGGAGAA 59.439 33.333 11.32 0.00 34.40 2.87
4338 4401 7.230108 AGACATGCACATCCATTAATTAAGGAG 59.770 37.037 11.32 9.93 34.40 3.69
4340 4403 7.281040 AGACATGCACATCCATTAATTAAGG 57.719 36.000 3.94 3.39 0.00 2.69
4341 4404 9.590451 AAAAGACATGCACATCCATTAATTAAG 57.410 29.630 3.94 0.00 0.00 1.85
4343 4406 7.492020 GCAAAAGACATGCACATCCATTAATTA 59.508 33.333 0.00 0.00 43.29 1.40
4346 4409 5.170021 GCAAAAGACATGCACATCCATTAA 58.830 37.500 0.00 0.00 43.29 1.40
4347 4410 4.381825 GGCAAAAGACATGCACATCCATTA 60.382 41.667 0.00 0.00 45.60 1.90
4351 4414 1.547372 AGGCAAAAGACATGCACATCC 59.453 47.619 0.00 0.00 45.60 3.51
4352 4415 2.490903 AGAGGCAAAAGACATGCACATC 59.509 45.455 0.00 0.00 45.60 3.06
4353 4416 2.230508 CAGAGGCAAAAGACATGCACAT 59.769 45.455 0.00 0.00 45.60 3.21
4354 4417 1.610038 CAGAGGCAAAAGACATGCACA 59.390 47.619 0.00 0.00 45.60 4.57
4357 4420 2.157738 AGACAGAGGCAAAAGACATGC 58.842 47.619 0.00 0.00 43.08 4.06
4360 4423 3.134623 TCTTGAGACAGAGGCAAAAGACA 59.865 43.478 0.00 0.00 0.00 3.41
4361 4424 3.733337 TCTTGAGACAGAGGCAAAAGAC 58.267 45.455 0.00 0.00 0.00 3.01
4363 4426 5.163622 TGTTTTCTTGAGACAGAGGCAAAAG 60.164 40.000 0.00 0.00 0.00 2.27
4365 4428 4.269183 TGTTTTCTTGAGACAGAGGCAAA 58.731 39.130 0.00 0.00 0.00 3.68
4366 4429 3.884895 TGTTTTCTTGAGACAGAGGCAA 58.115 40.909 0.00 0.00 0.00 4.52
4368 4431 4.900635 TTTGTTTTCTTGAGACAGAGGC 57.099 40.909 0.00 0.00 0.00 4.70
4371 4434 5.050091 GCGAGATTTGTTTTCTTGAGACAGA 60.050 40.000 0.00 0.00 0.00 3.41
4372 4435 5.142962 GCGAGATTTGTTTTCTTGAGACAG 58.857 41.667 0.00 0.00 0.00 3.51
4373 4436 4.574421 TGCGAGATTTGTTTTCTTGAGACA 59.426 37.500 0.00 0.00 0.00 3.41
4374 4437 5.095691 TGCGAGATTTGTTTTCTTGAGAC 57.904 39.130 0.00 0.00 0.00 3.36
4376 4439 5.164119 GCAATGCGAGATTTGTTTTCTTGAG 60.164 40.000 0.00 0.00 0.00 3.02
4377 4440 4.681025 GCAATGCGAGATTTGTTTTCTTGA 59.319 37.500 0.00 0.00 0.00 3.02
4378 4441 4.445052 TGCAATGCGAGATTTGTTTTCTTG 59.555 37.500 0.00 0.00 0.00 3.02
4380 4443 4.232221 CTGCAATGCGAGATTTGTTTTCT 58.768 39.130 0.00 0.00 0.00 2.52
4381 4444 3.983344 ACTGCAATGCGAGATTTGTTTTC 59.017 39.130 10.68 0.00 0.00 2.29
4382 4445 3.981211 ACTGCAATGCGAGATTTGTTTT 58.019 36.364 10.68 0.00 0.00 2.43
4383 4446 3.648339 ACTGCAATGCGAGATTTGTTT 57.352 38.095 10.68 0.00 0.00 2.83
4386 4449 3.168963 CAGAACTGCAATGCGAGATTTG 58.831 45.455 10.68 2.63 0.00 2.32
4402 4465 3.255642 TGCCCTTTTGCAGATAACAGAAC 59.744 43.478 0.00 0.00 36.04 3.01
4449 4564 2.741517 CACGTTCTGGCACAATACATGA 59.258 45.455 0.00 0.00 38.70 3.07
4456 4571 0.730265 GAACACACGTTCTGGCACAA 59.270 50.000 0.00 0.00 46.72 3.33
4464 4579 2.453080 TGTACGTCTGAACACACGTTC 58.547 47.619 12.55 8.90 46.93 3.95
4468 4588 6.352526 CAGTTTTATGTACGTCTGAACACAC 58.647 40.000 0.00 0.00 0.00 3.82
4523 4644 3.838317 AGTCTGGCTGTAGTCAAATGGTA 59.162 43.478 0.00 0.00 0.00 3.25
4524 4645 2.639839 AGTCTGGCTGTAGTCAAATGGT 59.360 45.455 0.00 0.00 0.00 3.55
4533 4654 2.939103 GGCAATGTAAGTCTGGCTGTAG 59.061 50.000 0.00 0.00 33.14 2.74
4545 4672 9.113838 GATCAGAAGAAATTAGAGGCAATGTAA 57.886 33.333 0.00 0.00 0.00 2.41
4577 4704 4.859304 TCTTTGAGCTTTTGTGCATGAT 57.141 36.364 0.00 0.00 34.99 2.45
4608 4735 5.751990 GGCATCTTTGATTCTATTTTGCCAG 59.248 40.000 5.30 0.00 44.96 4.85
4610 4737 5.663456 TGGCATCTTTGATTCTATTTTGCC 58.337 37.500 0.00 0.00 45.63 4.52
4617 4748 4.194640 GTCTGCTGGCATCTTTGATTCTA 58.805 43.478 0.00 0.00 0.00 2.10
4634 4765 2.222027 AGTTAAAGTGCACCTGTCTGC 58.778 47.619 14.63 0.00 37.70 4.26
4644 4775 5.356882 TGTGAATGTGCTAGTTAAAGTGC 57.643 39.130 0.00 0.00 0.00 4.40
4656 4831 0.038067 TTGCTGCCATGTGAATGTGC 60.038 50.000 0.00 0.00 0.00 4.57
4789 4980 2.297033 GTCGGTGACCCACTAACTTACA 59.703 50.000 0.00 0.00 34.40 2.41
4801 4992 1.892209 ACCATTTTGAGTCGGTGACC 58.108 50.000 0.00 0.00 32.18 4.02
4832 5023 3.556513 CGTAACTCTCCATAGCATCGTC 58.443 50.000 0.00 0.00 0.00 4.20
4848 5039 6.727824 TTAGTACGAGCCTATATCCGTAAC 57.272 41.667 0.00 0.00 38.89 2.50
4976 5180 1.848886 AAGGCGAAACCAGTAGGGGG 61.849 60.000 0.00 0.00 43.14 5.40
4977 5181 0.906775 TAAGGCGAAACCAGTAGGGG 59.093 55.000 0.00 0.00 43.14 4.79
5016 5220 0.955428 TGATCAAGTTCACCTGCGCC 60.955 55.000 4.18 0.00 0.00 6.53
5046 5258 0.179089 CTCAAGGAGCTCATCACCGG 60.179 60.000 17.19 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.