Multiple sequence alignment - TraesCS5B01G098100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G098100 chr5B 100.000 3849 0 0 1 3849 129723426 129719578 0.000000e+00 7108
1 TraesCS5B01G098100 chr5D 96.412 1282 44 2 1641 2922 117264378 117265657 0.000000e+00 2111
2 TraesCS5B01G098100 chr5D 89.957 1394 99 21 125 1484 117262994 117264380 0.000000e+00 1760
3 TraesCS5B01G098100 chr5D 94.268 942 42 9 2912 3849 117265728 117266661 0.000000e+00 1430
4 TraesCS5B01G098100 chr5D 90.370 135 7 4 1 129 117262836 117262970 5.110000e-39 172
5 TraesCS5B01G098100 chr5A 93.584 1169 44 20 1921 3062 126271822 126272986 0.000000e+00 1714
6 TraesCS5B01G098100 chr5A 94.691 810 34 7 3044 3849 126272996 126273800 0.000000e+00 1249
7 TraesCS5B01G098100 chr5A 90.920 837 61 9 689 1516 126267646 126268476 0.000000e+00 1110
8 TraesCS5B01G098100 chr5A 88.389 422 36 10 299 707 126267203 126267624 2.670000e-136 496
9 TraesCS5B01G098100 chr5A 95.533 291 12 1 1635 1925 126268518 126268807 7.530000e-127 464
10 TraesCS5B01G098100 chr5A 95.210 167 6 2 1483 1647 320214405 320214239 2.950000e-66 263
11 TraesCS5B01G098100 chr5A 95.706 163 6 1 1483 1644 688327208 688327046 1.060000e-65 261
12 TraesCS5B01G098100 chr5A 89.205 176 11 4 125 292 126265372 126265547 3.010000e-51 213
13 TraesCS5B01G098100 chr5A 90.511 137 5 5 1 129 126265212 126265348 1.420000e-39 174
14 TraesCS5B01G098100 chr3B 95.181 166 7 1 1481 1645 654649709 654649874 1.060000e-65 261
15 TraesCS5B01G098100 chr2D 95.679 162 6 1 1483 1643 299891554 299891715 3.810000e-65 259
16 TraesCS5B01G098100 chr2D 79.615 260 40 9 1855 2103 114641187 114640930 1.420000e-39 174
17 TraesCS5B01G098100 chr7A 94.083 169 8 2 1483 1650 494786829 494786996 4.930000e-64 255
18 TraesCS5B01G098100 chr6B 94.083 169 8 2 1483 1650 481858012 481857845 4.930000e-64 255
19 TraesCS5B01G098100 chr6B 79.297 256 36 12 1855 2097 243241312 243241061 3.080000e-36 163
20 TraesCS5B01G098100 chr2A 94.578 166 8 1 1482 1646 135473227 135473392 4.930000e-64 255
21 TraesCS5B01G098100 chr2A 92.090 177 10 3 1482 1657 342647561 342647388 2.970000e-61 246
22 TraesCS5B01G098100 chr6A 93.064 173 10 2 1480 1650 153366871 153367043 6.380000e-63 252
23 TraesCS5B01G098100 chr4B 81.739 230 29 5 474 691 441086030 441085802 3.060000e-41 180
24 TraesCS5B01G098100 chr7D 80.498 241 34 9 1855 2084 559103850 559104088 5.110000e-39 172
25 TraesCS5B01G098100 chr4D 78.846 260 42 9 1855 2103 68488417 68488160 3.080000e-36 163
26 TraesCS5B01G098100 chr3D 86.486 148 16 4 1939 2084 590673511 590673656 3.980000e-35 159


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G098100 chr5B 129719578 129723426 3848 True 7108.000000 7108 100.000000 1 3849 1 chr5B.!!$R1 3848
1 TraesCS5B01G098100 chr5D 117262836 117266661 3825 False 1368.250000 2111 92.751750 1 3849 4 chr5D.!!$F1 3848
2 TraesCS5B01G098100 chr5A 126265212 126273800 8588 False 774.285714 1714 91.833286 1 3849 7 chr5A.!!$F1 3848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 179 0.035458 CACTTTCCCGACCTCTGCTT 59.965 55.0 0.0 0.0 0.0 3.91 F
612 2313 0.036765 TAGCACTAAACACTGGGGCG 60.037 55.0 0.0 0.0 0.0 6.13 F
1095 2849 0.107165 GGAAATGGGAGAAGGGGTCG 60.107 60.0 0.0 0.0 0.0 4.79 F
1103 2857 0.108756 GAGAAGGGGTCGCTGTACAC 60.109 60.0 0.0 0.0 0.0 2.90 F
2450 7309 0.099968 TAACAACCGAGAGATCGCCG 59.900 55.0 0.0 0.0 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 3099 0.036577 CAGAGGTGGAGGTGCAGAAG 60.037 60.000 0.00 0.00 0.00 2.85 R
2136 6995 0.038166 ACGATGTGTCTGGGCCATTT 59.962 50.000 6.72 0.00 0.00 2.32 R
2450 7309 0.960364 TTCTTCGCCTTCCACATGCC 60.960 55.000 0.00 0.00 0.00 4.40 R
2600 7459 1.546029 GGCCAAAGGATCCTTGTTGTC 59.454 52.381 27.71 16.08 36.26 3.18 R
3385 8351 0.179092 GCTGGATGGCTTGGATTTGC 60.179 55.000 0.00 0.00 0.00 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 172 8.365647 TCTAGATTATAATTCACTTTCCCGACC 58.634 37.037 0.00 0.00 0.00 4.79
142 179 0.035458 CACTTTCCCGACCTCTGCTT 59.965 55.000 0.00 0.00 0.00 3.91
248 293 6.990341 TGTGTTCCATGAATCATAACTGAG 57.010 37.500 9.47 0.00 34.12 3.35
259 304 4.558226 TCATAACTGAGTTGCATCACCT 57.442 40.909 8.33 0.00 0.00 4.00
293 338 5.123805 GGTCTACTATGACCGGAGAATTC 57.876 47.826 9.46 0.00 45.69 2.17
343 2037 2.093235 ACTAGAGCCATTTCAGCAGTCC 60.093 50.000 0.00 0.00 0.00 3.85
345 2039 2.191400 AGAGCCATTTCAGCAGTCCTA 58.809 47.619 0.00 0.00 0.00 2.94
425 2122 1.933853 GGTTGCGTAGTCACCATCATC 59.066 52.381 0.00 0.00 0.00 2.92
437 2134 2.494471 CACCATCATCATGTGCCTTGTT 59.506 45.455 0.00 0.00 0.00 2.83
455 2152 8.044309 TGCCTTGTTAATTGCTACTAGTAATCA 58.956 33.333 3.76 2.49 29.07 2.57
468 2165 7.806487 GCTACTAGTAATCATGTACGTGCAATA 59.194 37.037 11.22 1.78 0.00 1.90
469 2166 7.925703 ACTAGTAATCATGTACGTGCAATAC 57.074 36.000 11.22 11.38 0.00 1.89
478 2175 7.266400 TCATGTACGTGCAATACAGGTTAATA 58.734 34.615 11.22 2.58 44.81 0.98
488 2185 9.743057 TGCAATACAGGTTAATATTAATTGCAC 57.257 29.630 26.00 11.19 43.46 4.57
508 2205 7.830940 TGCACTGAAAATTAATATTTGGCAG 57.169 32.000 0.00 0.00 39.90 4.85
523 2220 5.929058 TTTGGCAGGATATTAATTGCACA 57.071 34.783 11.02 5.09 38.27 4.57
547 2248 9.283768 ACATTGATATAATTCATTGGTTAGCGA 57.716 29.630 0.00 0.00 33.41 4.93
582 2283 4.556697 TGCTATCAATTAGGGGAGAGTGA 58.443 43.478 0.00 0.00 0.00 3.41
597 2298 5.880332 GGGAGAGTGATAAACATGTTTAGCA 59.120 40.000 34.04 34.04 45.55 3.49
612 2313 0.036765 TAGCACTAAACACTGGGGCG 60.037 55.000 0.00 0.00 0.00 6.13
643 2344 1.934589 TGGATAGATGCGGTTGAACG 58.065 50.000 0.00 0.00 0.00 3.95
644 2345 1.206132 TGGATAGATGCGGTTGAACGT 59.794 47.619 0.00 0.00 35.98 3.99
645 2346 2.427812 TGGATAGATGCGGTTGAACGTA 59.572 45.455 0.00 0.00 35.98 3.57
668 2369 1.134580 AGATGTGTTGGATCTCCGCAG 60.135 52.381 0.00 0.00 39.43 5.18
687 2388 5.388890 CCGCAGCTCGCTCTTTTTATATTAG 60.389 44.000 6.58 0.00 39.08 1.73
688 2389 5.175856 CGCAGCTCGCTCTTTTTATATTAGT 59.824 40.000 6.58 0.00 39.08 2.24
689 2390 6.362551 CGCAGCTCGCTCTTTTTATATTAGTA 59.637 38.462 6.58 0.00 39.08 1.82
691 2392 8.548721 GCAGCTCGCTCTTTTTATATTAGTAAA 58.451 33.333 1.48 0.00 37.77 2.01
732 2480 5.235305 TCAAAGCTCAAACTTCACTTGTC 57.765 39.130 0.00 0.00 0.00 3.18
744 2492 4.282195 ACTTCACTTGTCTAAGGTCAGGAG 59.718 45.833 0.00 0.00 38.26 3.69
746 2494 4.480115 TCACTTGTCTAAGGTCAGGAGAA 58.520 43.478 0.00 0.00 38.26 2.87
757 2505 9.213777 TCTAAGGTCAGGAGAATGTTTATATGT 57.786 33.333 0.00 0.00 0.00 2.29
758 2506 9.482627 CTAAGGTCAGGAGAATGTTTATATGTC 57.517 37.037 0.00 0.00 0.00 3.06
759 2507 7.682787 AGGTCAGGAGAATGTTTATATGTCT 57.317 36.000 0.00 0.00 0.00 3.41
760 2508 8.783660 AGGTCAGGAGAATGTTTATATGTCTA 57.216 34.615 0.00 0.00 0.00 2.59
762 2510 8.421784 GGTCAGGAGAATGTTTATATGTCTACA 58.578 37.037 0.00 0.00 0.00 2.74
763 2511 9.250624 GTCAGGAGAATGTTTATATGTCTACAC 57.749 37.037 0.00 0.00 0.00 2.90
765 2513 8.204160 CAGGAGAATGTTTATATGTCTACACCA 58.796 37.037 0.00 0.00 0.00 4.17
767 2515 8.827677 GGAGAATGTTTATATGTCTACACCAAC 58.172 37.037 0.00 0.00 0.00 3.77
768 2516 8.732746 AGAATGTTTATATGTCTACACCAACC 57.267 34.615 0.00 0.00 0.00 3.77
769 2517 8.325787 AGAATGTTTATATGTCTACACCAACCA 58.674 33.333 0.00 0.00 0.00 3.67
770 2518 8.506168 AATGTTTATATGTCTACACCAACCAG 57.494 34.615 0.00 0.00 0.00 4.00
809 2557 0.249953 CACATGCCCTTTGCTTGCAA 60.250 50.000 3.70 3.70 46.26 4.08
812 2560 2.031012 GCCCTTTGCTTGCAACCC 59.969 61.111 7.60 0.00 36.87 4.11
886 2634 9.678260 ACATTCATCATTTTCTTCTAGCTAACT 57.322 29.630 0.00 0.00 0.00 2.24
889 2637 8.412608 TCATCATTTTCTTCTAGCTAACTTCG 57.587 34.615 0.00 0.00 0.00 3.79
892 2640 6.649141 TCATTTTCTTCTAGCTAACTTCGCAA 59.351 34.615 0.00 0.00 0.00 4.85
918 2666 4.417437 TCTGCTACCTAACTTCACCTTCT 58.583 43.478 0.00 0.00 0.00 2.85
930 2678 6.426646 ACTTCACCTTCTCTTCTTGTATGT 57.573 37.500 0.00 0.00 0.00 2.29
947 2695 0.611200 TGTACCAGCTACGTGCCATT 59.389 50.000 0.00 0.00 44.23 3.16
948 2696 1.006832 GTACCAGCTACGTGCCATTG 58.993 55.000 0.00 0.00 44.23 2.82
953 2701 2.331893 GCTACGTGCCATTGCCACA 61.332 57.895 0.00 0.00 36.33 4.17
1011 2759 1.494960 AGAGGAGAATGAGGCTGGTC 58.505 55.000 0.00 0.00 0.00 4.02
1038 2792 1.829849 CTCAGATTCAGGCACCTCAGA 59.170 52.381 0.00 0.00 0.00 3.27
1040 2794 0.908198 AGATTCAGGCACCTCAGACC 59.092 55.000 0.00 0.00 0.00 3.85
1062 2816 1.298157 CGTTCCTCGCCATCTTTGCA 61.298 55.000 0.00 0.00 0.00 4.08
1068 2822 0.874390 TCGCCATCTTTGCAGTGTTC 59.126 50.000 0.00 0.00 0.00 3.18
1092 2846 2.042979 TCTTTGGAAATGGGAGAAGGGG 59.957 50.000 0.00 0.00 0.00 4.79
1095 2849 0.107165 GGAAATGGGAGAAGGGGTCG 60.107 60.000 0.00 0.00 0.00 4.79
1103 2857 0.108756 GAGAAGGGGTCGCTGTACAC 60.109 60.000 0.00 0.00 0.00 2.90
1110 2864 1.248785 GGTCGCTGTACACTCCTGGA 61.249 60.000 0.00 0.00 0.00 3.86
1215 2969 2.167487 GTCCTCTCTGTGGGTCATCTTC 59.833 54.545 0.00 0.00 0.00 2.87
1222 2976 2.190578 GGGTCATCTTCGGGGCTG 59.809 66.667 0.00 0.00 0.00 4.85
1231 2985 2.426305 CTTCGGGGCTGGTTTTCCCT 62.426 60.000 0.00 0.00 42.25 4.20
1243 2997 5.208463 TGGTTTTCCCTGTAAATTTCTGC 57.792 39.130 0.00 0.00 39.73 4.26
1273 3027 6.980978 CACTCACAGTTTGTAGATCGGAATAT 59.019 38.462 0.00 0.00 0.00 1.28
1307 3061 1.135915 GATCTCCCCATCATCGATCCG 59.864 57.143 0.00 0.00 0.00 4.18
1322 3076 2.391724 ATCCGTTGGTGCAGTCGGTT 62.392 55.000 15.03 7.33 42.95 4.44
1342 3096 4.936411 GGTTACTGAAGTAGGAAAGGAAGC 59.064 45.833 0.00 0.00 28.83 3.86
1345 3099 3.244596 ACTGAAGTAGGAAAGGAAGCCAC 60.245 47.826 0.00 0.00 0.00 5.01
1392 3146 8.200120 CCATAGTTCATAACTCTGAAGATGTCA 58.800 37.037 6.72 0.00 41.77 3.58
1393 3147 9.761504 CATAGTTCATAACTCTGAAGATGTCAT 57.238 33.333 0.00 0.00 41.77 3.06
1410 3164 4.001652 TGTCATAAATAACGCGGGAACAA 58.998 39.130 12.47 0.00 0.00 2.83
1417 3171 3.411351 CGCGGGAACAACACCTCG 61.411 66.667 0.00 0.00 0.00 4.63
1432 3186 3.833070 ACACCTCGTCAGAAGAAAGGTAT 59.167 43.478 0.00 0.00 39.13 2.73
1454 3208 4.974645 TTCACTATCTCACACCCTTTGT 57.025 40.909 0.00 0.00 39.97 2.83
1481 3235 4.707030 TGTGCTATTGGCTTTTGAGATG 57.293 40.909 0.00 0.00 42.39 2.90
1482 3236 4.081406 TGTGCTATTGGCTTTTGAGATGT 58.919 39.130 0.00 0.00 42.39 3.06
1483 3237 5.252547 TGTGCTATTGGCTTTTGAGATGTA 58.747 37.500 0.00 0.00 42.39 2.29
1484 3238 5.123820 TGTGCTATTGGCTTTTGAGATGTAC 59.876 40.000 0.00 0.00 42.39 2.90
1485 3239 5.355350 GTGCTATTGGCTTTTGAGATGTACT 59.645 40.000 0.00 0.00 42.39 2.73
1486 3240 5.586243 TGCTATTGGCTTTTGAGATGTACTC 59.414 40.000 0.00 0.00 42.62 2.59
1487 3241 5.008118 GCTATTGGCTTTTGAGATGTACTCC 59.992 44.000 0.00 0.00 40.19 3.85
1488 3242 3.350219 TGGCTTTTGAGATGTACTCCC 57.650 47.619 0.00 0.00 44.34 4.30
1489 3243 2.912956 TGGCTTTTGAGATGTACTCCCT 59.087 45.455 0.00 0.00 44.34 4.20
1490 3244 3.055094 TGGCTTTTGAGATGTACTCCCTC 60.055 47.826 0.00 0.00 44.34 4.30
1491 3245 3.536570 GCTTTTGAGATGTACTCCCTCC 58.463 50.000 0.00 0.00 44.34 4.30
1492 3246 3.055094 GCTTTTGAGATGTACTCCCTCCA 60.055 47.826 0.00 0.00 44.34 3.86
1493 3247 4.384647 GCTTTTGAGATGTACTCCCTCCAT 60.385 45.833 0.00 0.00 44.34 3.41
1494 3248 5.749462 CTTTTGAGATGTACTCCCTCCATT 58.251 41.667 0.00 0.00 44.34 3.16
1495 3249 5.359194 TTTGAGATGTACTCCCTCCATTC 57.641 43.478 0.00 0.00 44.34 2.67
1496 3250 3.309296 TGAGATGTACTCCCTCCATTCC 58.691 50.000 0.00 0.00 44.34 3.01
1497 3251 3.051803 TGAGATGTACTCCCTCCATTCCT 60.052 47.826 0.00 0.00 44.34 3.36
1498 3252 4.170053 TGAGATGTACTCCCTCCATTCCTA 59.830 45.833 0.00 0.00 44.34 2.94
1499 3253 5.148502 GAGATGTACTCCCTCCATTCCTAA 58.851 45.833 0.00 0.00 39.53 2.69
1500 3254 5.538877 AGATGTACTCCCTCCATTCCTAAA 58.461 41.667 0.00 0.00 0.00 1.85
1501 3255 6.153924 AGATGTACTCCCTCCATTCCTAAAT 58.846 40.000 0.00 0.00 0.00 1.40
1502 3256 7.313731 AGATGTACTCCCTCCATTCCTAAATA 58.686 38.462 0.00 0.00 0.00 1.40
1503 3257 7.964293 AGATGTACTCCCTCCATTCCTAAATAT 59.036 37.037 0.00 0.00 0.00 1.28
1504 3258 9.268282 GATGTACTCCCTCCATTCCTAAATATA 57.732 37.037 0.00 0.00 0.00 0.86
1505 3259 9.629649 ATGTACTCCCTCCATTCCTAAATATAA 57.370 33.333 0.00 0.00 0.00 0.98
1506 3260 9.101325 TGTACTCCCTCCATTCCTAAATATAAG 57.899 37.037 0.00 0.00 0.00 1.73
1507 3261 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
1508 3262 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
1509 3263 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
1510 3264 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
1511 3265 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
1512 3266 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
1539 3293 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
1540 3294 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
1541 3295 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
1542 3296 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
1544 3298 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
1545 3299 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
1546 3300 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
1551 3305 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
1552 3306 8.323567 TGGACTACATACGGATGTATATAGACA 58.676 37.037 20.64 12.12 45.42 3.41
1553 3307 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
1584 3338 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
1585 3339 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
1586 3340 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
1587 3341 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
1588 3342 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
1589 3343 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
1590 3344 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
1591 3345 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
1592 3346 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
1593 3347 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
1594 3348 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
1595 3349 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
1596 3350 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1597 3351 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1598 3352 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
1599 3353 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
1600 3354 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
1601 3355 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
1602 3356 5.134202 TGCTCCGTATGTAGTCCATATTG 57.866 43.478 0.00 0.00 38.29 1.90
1603 3357 4.021456 TGCTCCGTATGTAGTCCATATTGG 60.021 45.833 0.00 0.00 38.29 3.16
1604 3358 4.219944 GCTCCGTATGTAGTCCATATTGGA 59.780 45.833 0.00 0.00 45.98 3.53
1653 3490 8.432805 AGGAACAGATGGAGTATTATGTTAAGG 58.567 37.037 0.00 0.00 32.43 2.69
1667 3504 8.738645 ATTATGTTAAGGTTAGCTTTCTCCTG 57.261 34.615 0.92 0.00 0.00 3.86
1713 3550 5.762179 AGAATGTGACTACAGGAATGGAA 57.238 39.130 0.00 0.00 40.79 3.53
1724 3561 2.501316 CAGGAATGGAAAATGGGTTCCC 59.499 50.000 0.12 0.12 45.67 3.97
1725 3562 2.113414 AGGAATGGAAAATGGGTTCCCA 59.887 45.455 13.29 13.29 45.67 4.37
1838 3675 5.502606 GCTTACGAGAAATTTAGATGGCAC 58.497 41.667 0.00 0.00 0.00 5.01
1869 3706 0.519519 CGGTATGCCAGCGTTTCAAA 59.480 50.000 0.00 0.00 43.13 2.69
1885 3722 4.589216 TTCAAACTGCCCAATTCTTGAG 57.411 40.909 0.00 0.00 0.00 3.02
2047 6906 3.521560 TGCTTATGTAGGCGACTCTTTG 58.478 45.455 0.00 0.00 43.67 2.77
2136 6995 1.899814 AGATGTTGGCTCCAAGTACGA 59.100 47.619 0.83 0.00 36.52 3.43
2174 7033 1.942223 GCAAAACGACCAACACGGC 60.942 57.895 0.00 0.00 39.03 5.68
2276 7135 2.224475 CCTCTCAGGCGATCAAATCCAT 60.224 50.000 0.00 0.00 0.00 3.41
2308 7167 2.514592 ATGCACCTTGATCGCCCG 60.515 61.111 0.00 0.00 0.00 6.13
2450 7309 0.099968 TAACAACCGAGAGATCGCCG 59.900 55.000 0.00 0.00 0.00 6.46
2491 7350 8.948631 AGAACTTCACTATACATGGTGTTATG 57.051 34.615 0.00 0.00 39.85 1.90
2566 7425 2.362077 GTCACTGTCACCAAGGCATTTT 59.638 45.455 0.00 0.00 0.00 1.82
2982 7921 7.956420 TGTAACTCTGTAACACTTGTTATGG 57.044 36.000 5.16 2.53 41.85 2.74
2996 7935 4.739587 TGTTATGGCGGTATACAGTTCA 57.260 40.909 5.01 4.66 0.00 3.18
3035 7974 7.220740 TCAAGACCATGAAACACTGTTATACA 58.779 34.615 0.00 0.00 0.00 2.29
3040 7979 8.579850 ACCATGAAACACTGTTATACATGATT 57.420 30.769 23.40 14.48 36.70 2.57
3041 7980 8.461222 ACCATGAAACACTGTTATACATGATTG 58.539 33.333 23.40 15.63 36.70 2.67
3042 7981 8.461222 CCATGAAACACTGTTATACATGATTGT 58.539 33.333 23.40 0.00 39.98 2.71
3043 7982 9.281075 CATGAAACACTGTTATACATGATTGTG 57.719 33.333 20.23 1.35 36.53 3.33
3044 7983 8.389779 TGAAACACTGTTATACATGATTGTGT 57.610 30.769 0.00 1.97 38.77 3.72
3045 7984 8.288913 TGAAACACTGTTATACATGATTGTGTG 58.711 33.333 0.00 2.40 37.45 3.82
3047 7986 7.744087 ACACTGTTATACATGATTGTGTGTT 57.256 32.000 0.00 0.00 33.96 3.32
3048 7987 7.806690 ACACTGTTATACATGATTGTGTGTTC 58.193 34.615 0.00 0.00 33.96 3.18
3050 7989 8.288913 CACTGTTATACATGATTGTGTGTTCAA 58.711 33.333 0.00 0.00 36.53 2.69
3051 7990 9.013229 ACTGTTATACATGATTGTGTGTTCAAT 57.987 29.630 0.00 0.00 40.20 2.57
3065 8029 6.751425 TGTGTGTTCAATCAAAGAAACATGAC 59.249 34.615 0.00 0.00 0.00 3.06
3066 8030 6.974622 GTGTGTTCAATCAAAGAAACATGACT 59.025 34.615 0.00 0.00 0.00 3.41
3311 8277 2.005451 GCACTGATGGTCACAGTCATC 58.995 52.381 0.00 0.00 45.15 2.92
3357 8323 3.139397 ACTTCTTGGGGTATCACCAAACA 59.861 43.478 5.00 0.00 46.54 2.83
3381 8347 2.096980 CACATGACTAAGCAGTGGCATG 59.903 50.000 14.41 14.41 44.61 4.06
3385 8351 2.012673 GACTAAGCAGTGGCATGAAGG 58.987 52.381 0.00 0.00 44.61 3.46
3567 8533 7.783042 AGTTCATACTTCATAGTCCCACTTAC 58.217 38.462 0.00 0.00 35.78 2.34
3571 8537 9.429109 TCATACTTCATAGTCCCACTTACATTA 57.571 33.333 0.00 0.00 35.78 1.90
3575 8541 8.258708 ACTTCATAGTCCCACTTACATTAGAAC 58.741 37.037 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 83 3.067461 GTGTGTGTGGCAAGATTGGTAAA 59.933 43.478 0.00 0.00 0.00 2.01
159 196 6.722129 AGTACTCTGTCTAGTTGGAACATCTT 59.278 38.462 0.00 0.00 39.36 2.40
248 293 4.274459 CCTGCTATTCTAAGGTGATGCAAC 59.726 45.833 0.00 0.00 0.00 4.17
259 304 7.762588 GTCATAGTAGACCCTGCTATTCTAA 57.237 40.000 2.52 0.00 37.30 2.10
285 330 3.652057 TCCAAGGTGATGGAATTCTCC 57.348 47.619 5.23 1.46 46.36 3.71
293 338 0.457035 CCGCAATTCCAAGGTGATGG 59.543 55.000 0.00 0.00 42.12 3.51
343 2037 8.667076 TGATGAACAATTGACCTGATATGTAG 57.333 34.615 13.59 0.00 0.00 2.74
345 2039 7.114754 ACTGATGAACAATTGACCTGATATGT 58.885 34.615 13.59 0.00 0.00 2.29
425 2122 5.314923 AGTAGCAATTAACAAGGCACATG 57.685 39.130 0.00 0.00 0.00 3.21
437 2134 9.673454 CACGTACATGATTACTAGTAGCAATTA 57.327 33.333 0.00 0.00 0.00 1.40
455 2152 8.671384 AATATTAACCTGTATTGCACGTACAT 57.329 30.769 10.59 1.45 32.13 2.29
531 2228 8.950210 CCTAATATCATCGCTAACCAATGAATT 58.050 33.333 0.00 0.00 33.44 2.17
533 2230 7.450074 ACCTAATATCATCGCTAACCAATGAA 58.550 34.615 0.00 0.00 33.44 2.57
534 2231 7.004555 ACCTAATATCATCGCTAACCAATGA 57.995 36.000 0.00 0.00 34.17 2.57
535 2232 8.820933 CATACCTAATATCATCGCTAACCAATG 58.179 37.037 0.00 0.00 0.00 2.82
537 2234 6.816640 GCATACCTAATATCATCGCTAACCAA 59.183 38.462 0.00 0.00 0.00 3.67
538 2235 6.154534 AGCATACCTAATATCATCGCTAACCA 59.845 38.462 0.00 0.00 0.00 3.67
539 2236 6.574350 AGCATACCTAATATCATCGCTAACC 58.426 40.000 0.00 0.00 0.00 2.85
540 2237 9.400638 GATAGCATACCTAATATCATCGCTAAC 57.599 37.037 0.00 0.00 33.57 2.34
541 2238 9.131791 TGATAGCATACCTAATATCATCGCTAA 57.868 33.333 0.00 0.00 33.57 3.09
544 2245 8.824159 ATTGATAGCATACCTAATATCATCGC 57.176 34.615 0.00 0.00 35.26 4.58
597 2298 0.690762 ATGTCGCCCCAGTGTTTAGT 59.309 50.000 0.00 0.00 0.00 2.24
605 2306 0.675522 AACGGTTTATGTCGCCCCAG 60.676 55.000 0.00 0.00 0.00 4.45
606 2307 0.956410 CAACGGTTTATGTCGCCCCA 60.956 55.000 0.00 0.00 0.00 4.96
609 2310 1.375551 ATCCAACGGTTTATGTCGCC 58.624 50.000 0.00 0.00 0.00 5.54
612 2313 4.084537 CGCATCTATCCAACGGTTTATGTC 60.085 45.833 0.00 0.00 0.00 3.06
643 2344 4.302455 CGGAGATCCAACACATCTCATAC 58.698 47.826 10.95 0.00 45.71 2.39
644 2345 3.243873 GCGGAGATCCAACACATCTCATA 60.244 47.826 10.95 0.00 45.71 2.15
645 2346 2.484417 GCGGAGATCCAACACATCTCAT 60.484 50.000 10.95 0.00 45.71 2.90
716 2464 6.049149 TGACCTTAGACAAGTGAAGTTTGAG 58.951 40.000 0.00 0.00 0.00 3.02
728 2476 5.825593 AACATTCTCCTGACCTTAGACAA 57.174 39.130 0.00 0.00 0.00 3.18
732 2480 9.482627 GACATATAAACATTCTCCTGACCTTAG 57.517 37.037 0.00 0.00 0.00 2.18
744 2492 8.500753 TGGTTGGTGTAGACATATAAACATTC 57.499 34.615 0.00 0.00 0.00 2.67
746 2494 6.542370 GCTGGTTGGTGTAGACATATAAACAT 59.458 38.462 0.00 0.00 0.00 2.71
757 2505 2.092103 ACAAAAGGCTGGTTGGTGTAGA 60.092 45.455 13.84 0.00 0.00 2.59
758 2506 2.306847 ACAAAAGGCTGGTTGGTGTAG 58.693 47.619 13.84 0.00 0.00 2.74
759 2507 2.445682 ACAAAAGGCTGGTTGGTGTA 57.554 45.000 13.84 0.00 0.00 2.90
760 2508 2.028876 GTACAAAAGGCTGGTTGGTGT 58.971 47.619 13.84 3.94 0.00 4.16
762 2510 1.063567 TGGTACAAAAGGCTGGTTGGT 60.064 47.619 13.84 0.87 31.92 3.67
763 2511 1.698506 TGGTACAAAAGGCTGGTTGG 58.301 50.000 13.84 0.00 31.92 3.77
889 2637 6.086871 GTGAAGTTAGGTAGCAGAAAATTGC 58.913 40.000 0.00 0.00 44.41 3.56
892 2640 6.128138 AGGTGAAGTTAGGTAGCAGAAAAT 57.872 37.500 0.00 0.00 0.00 1.82
918 2666 4.703575 ACGTAGCTGGTACATACAAGAAGA 59.296 41.667 16.31 0.00 38.20 2.87
930 2678 0.742990 GCAATGGCACGTAGCTGGTA 60.743 55.000 0.00 0.00 44.79 3.25
947 2695 5.499313 TCTTCAAATGACAGATATGTGGCA 58.501 37.500 11.37 11.37 40.69 4.92
948 2696 6.441093 TTCTTCAAATGACAGATATGTGGC 57.559 37.500 0.00 1.09 0.00 5.01
953 2701 8.404000 GCACAGATTTCTTCAAATGACAGATAT 58.596 33.333 0.00 0.00 31.94 1.63
1011 2759 3.473147 CCTGAATCTGAGGCCACAG 57.527 57.895 22.93 22.93 39.02 3.66
1020 2774 1.406614 GGTCTGAGGTGCCTGAATCTG 60.407 57.143 0.00 0.00 0.00 2.90
1062 2816 3.897505 CCCATTTCCAAAGAAGGAACACT 59.102 43.478 0.00 0.00 46.85 3.55
1092 2846 0.601558 TTCCAGGAGTGTACAGCGAC 59.398 55.000 0.00 0.00 0.00 5.19
1095 2849 1.834263 AGGATTCCAGGAGTGTACAGC 59.166 52.381 5.29 0.00 0.00 4.40
1103 2857 1.739338 CGGTCGGAGGATTCCAGGAG 61.739 65.000 5.29 0.00 44.26 3.69
1215 2969 2.132089 TACAGGGAAAACCAGCCCCG 62.132 60.000 0.00 0.00 45.89 5.73
1222 2976 5.230182 CAGCAGAAATTTACAGGGAAAACC 58.770 41.667 0.00 0.00 40.67 3.27
1231 2985 4.214119 GTGAGTGAGCAGCAGAAATTTACA 59.786 41.667 0.00 0.00 0.00 2.41
1243 2997 3.982475 TCTACAAACTGTGAGTGAGCAG 58.018 45.455 0.00 0.00 38.58 4.24
1291 3045 0.392706 CAACGGATCGATGATGGGGA 59.607 55.000 0.54 0.00 31.46 4.81
1307 3061 3.300711 AGTAACCGACTGCACCAAC 57.699 52.632 0.00 0.00 36.87 3.77
1322 3076 4.020485 GTGGCTTCCTTTCCTACTTCAGTA 60.020 45.833 0.00 0.00 0.00 2.74
1342 3096 1.302832 GGTGGAGGTGCAGAAGTGG 60.303 63.158 0.00 0.00 0.00 4.00
1345 3099 0.036577 CAGAGGTGGAGGTGCAGAAG 60.037 60.000 0.00 0.00 0.00 2.85
1392 3146 3.127376 GGTGTTGTTCCCGCGTTATTTAT 59.873 43.478 4.92 0.00 0.00 1.40
1393 3147 2.483491 GGTGTTGTTCCCGCGTTATTTA 59.517 45.455 4.92 0.00 0.00 1.40
1394 3148 1.267533 GGTGTTGTTCCCGCGTTATTT 59.732 47.619 4.92 0.00 0.00 1.40
1395 3149 0.876399 GGTGTTGTTCCCGCGTTATT 59.124 50.000 4.92 0.00 0.00 1.40
1410 3164 2.040178 ACCTTTCTTCTGACGAGGTGT 58.960 47.619 0.00 0.00 37.51 4.16
1417 3171 9.308318 GAGATAGTGAAATACCTTTCTTCTGAC 57.692 37.037 0.41 0.00 41.18 3.51
1432 3186 5.304686 ACAAAGGGTGTGAGATAGTGAAA 57.695 39.130 0.00 0.00 39.72 2.69
1470 3224 3.055094 TGGAGGGAGTACATCTCAAAAGC 60.055 47.826 0.00 0.00 44.40 3.51
1481 3235 9.102453 ACTTATATTTAGGAATGGAGGGAGTAC 57.898 37.037 0.00 0.00 0.00 2.73
1482 3236 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
1483 3237 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
1484 3238 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
1485 3239 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
1486 3240 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
1513 3267 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
1514 3268 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
1515 3269 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
1516 3270 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
1517 3271 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
1518 3272 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
1519 3273 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
1520 3274 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
1562 3316 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
1563 3317 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
1564 3318 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
1565 3319 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
1566 3320 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
1567 3321 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1568 3322 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
1569 3323 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
1570 3324 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
1571 3325 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
1572 3326 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
1573 3327 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
1574 3328 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1575 3329 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
1576 3330 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
1577 3331 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
1578 3332 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
1579 3333 5.510690 CCAATATGGACTACATACGGAGCAA 60.511 44.000 0.00 0.00 44.41 3.91
1580 3334 4.021456 CCAATATGGACTACATACGGAGCA 60.021 45.833 0.00 0.00 44.41 4.26
1581 3335 4.219944 TCCAATATGGACTACATACGGAGC 59.780 45.833 0.00 0.00 42.67 4.70
1582 3336 5.977489 TCCAATATGGACTACATACGGAG 57.023 43.478 0.00 0.00 42.67 4.63
1627 3381 8.432805 CCTTAACATAATACTCCATCTGTTCCT 58.567 37.037 0.00 0.00 0.00 3.36
1628 3382 8.211629 ACCTTAACATAATACTCCATCTGTTCC 58.788 37.037 0.00 0.00 0.00 3.62
1629 3383 9.614792 AACCTTAACATAATACTCCATCTGTTC 57.385 33.333 0.00 0.00 0.00 3.18
1632 3386 9.209175 GCTAACCTTAACATAATACTCCATCTG 57.791 37.037 0.00 0.00 0.00 2.90
1633 3387 9.160412 AGCTAACCTTAACATAATACTCCATCT 57.840 33.333 0.00 0.00 0.00 2.90
1634 3388 9.780186 AAGCTAACCTTAACATAATACTCCATC 57.220 33.333 0.00 0.00 30.18 3.51
1636 3390 9.609346 GAAAGCTAACCTTAACATAATACTCCA 57.391 33.333 0.00 0.00 32.20 3.86
1637 3391 9.833917 AGAAAGCTAACCTTAACATAATACTCC 57.166 33.333 0.00 0.00 32.20 3.85
1639 3393 9.833917 GGAGAAAGCTAACCTTAACATAATACT 57.166 33.333 0.00 0.00 32.20 2.12
1653 3490 6.450545 AGCAAAAATTCAGGAGAAAGCTAAC 58.549 36.000 0.00 0.00 37.29 2.34
1838 3675 1.524621 CATACCGCAGCCTTCAGGG 60.525 63.158 0.00 0.00 35.18 4.45
1852 3689 2.584791 CAGTTTGAAACGCTGGCATAC 58.415 47.619 1.97 0.00 36.23 2.39
1885 3722 4.078639 AGGAGCAGCAACATATACCTTC 57.921 45.455 0.00 0.00 0.00 3.46
2047 6906 1.225704 CTGGAACATCTGCCTCCCC 59.774 63.158 0.00 0.00 38.20 4.81
2136 6995 0.038166 ACGATGTGTCTGGGCCATTT 59.962 50.000 6.72 0.00 0.00 2.32
2308 7167 3.058846 GGTTCTTCTTGAGAAACGAAGGC 60.059 47.826 0.00 0.00 45.59 4.35
2428 7287 3.549423 CGGCGATCTCTCGGTTGTTATTA 60.549 47.826 0.00 0.00 45.15 0.98
2450 7309 0.960364 TTCTTCGCCTTCCACATGCC 60.960 55.000 0.00 0.00 0.00 4.40
2566 7425 2.593026 GTGTTCCACTCCCCATTGAAA 58.407 47.619 0.00 0.00 0.00 2.69
2600 7459 1.546029 GGCCAAAGGATCCTTGTTGTC 59.454 52.381 27.71 16.08 36.26 3.18
2628 7487 4.338879 AGAATGATTCTGAAACACCCTGG 58.661 43.478 6.93 0.00 38.91 4.45
3040 7979 6.751425 GTCATGTTTCTTTGATTGAACACACA 59.249 34.615 0.00 0.00 0.00 3.72
3041 7980 6.974622 AGTCATGTTTCTTTGATTGAACACAC 59.025 34.615 0.00 0.00 0.00 3.82
3042 7981 7.099266 AGTCATGTTTCTTTGATTGAACACA 57.901 32.000 0.00 0.00 0.00 3.72
3043 7982 8.559536 TCTAGTCATGTTTCTTTGATTGAACAC 58.440 33.333 0.00 0.00 0.00 3.32
3044 7983 8.675705 TCTAGTCATGTTTCTTTGATTGAACA 57.324 30.769 0.00 0.00 0.00 3.18
3051 7990 9.383519 GGATGTATTCTAGTCATGTTTCTTTGA 57.616 33.333 0.00 0.00 0.00 2.69
3062 8026 8.533569 TTGTCATACTGGATGTATTCTAGTCA 57.466 34.615 0.00 0.00 41.98 3.41
3065 8029 7.665690 AGCTTGTCATACTGGATGTATTCTAG 58.334 38.462 0.00 0.00 39.66 2.43
3066 8030 7.603180 AGCTTGTCATACTGGATGTATTCTA 57.397 36.000 0.00 0.00 39.66 2.10
3141 8107 4.888823 TCCTTTTTGTAAGCCCGTTTAACT 59.111 37.500 0.00 0.00 0.00 2.24
3203 8169 2.303175 GAGCTTGGGGTGTTTGTGTTA 58.697 47.619 0.00 0.00 0.00 2.41
3344 8310 3.818210 TCATGTGTGTGTTTGGTGATACC 59.182 43.478 0.00 0.00 39.22 2.73
3345 8311 4.515191 AGTCATGTGTGTGTTTGGTGATAC 59.485 41.667 0.00 0.00 0.00 2.24
3357 8323 2.771089 CCACTGCTTAGTCATGTGTGT 58.229 47.619 0.00 0.00 0.00 3.72
3385 8351 0.179092 GCTGGATGGCTTGGATTTGC 60.179 55.000 0.00 0.00 0.00 3.68
3567 8533 7.254252 CCTGCTAGAATGAAACTCGTTCTAATG 60.254 40.741 15.63 8.97 37.13 1.90
3571 8537 4.021016 ACCTGCTAGAATGAAACTCGTTCT 60.021 41.667 13.97 13.97 37.13 3.01
3575 8541 4.744570 TGTACCTGCTAGAATGAAACTCG 58.255 43.478 0.00 0.00 0.00 4.18
3650 8620 6.596309 AAAAAGGTGAGGAGGATGATTTTC 57.404 37.500 0.00 0.00 0.00 2.29
3651 8621 6.437477 GGTAAAAAGGTGAGGAGGATGATTTT 59.563 38.462 0.00 0.00 0.00 1.82
3767 8737 3.931468 TGTGCACCTTTCATTTGTTTGTG 59.069 39.130 15.69 0.00 0.00 3.33
3784 8755 7.350382 TCCAAGGTATAAATATTTCCTGTGCA 58.650 34.615 3.39 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.