Multiple sequence alignment - TraesCS5B01G097200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G097200 chr5B 100.000 5707 0 0 1946 7652 128465711 128471417 0.000000e+00 10539.0
1 TraesCS5B01G097200 chr5B 100.000 1593 0 0 1 1593 128463766 128465358 0.000000e+00 2942.0
2 TraesCS5B01G097200 chr5B 96.639 119 4 0 1466 1584 35303431 35303313 1.680000e-46 198.0
3 TraesCS5B01G097200 chr5B 96.639 119 4 0 1466 1584 126257432 126257550 1.680000e-46 198.0
4 TraesCS5B01G097200 chr5B 90.291 103 5 5 3265 3365 664875687 664875588 6.230000e-26 130.0
5 TraesCS5B01G097200 chr5A 90.645 3891 195 53 3354 7150 125147057 125143242 0.000000e+00 5012.0
6 TraesCS5B01G097200 chr5A 91.149 1062 67 20 2229 3275 125148103 125147054 0.000000e+00 1415.0
7 TraesCS5B01G097200 chr5A 91.379 812 33 12 673 1464 125149102 125148308 0.000000e+00 1077.0
8 TraesCS5B01G097200 chr5A 86.398 669 64 13 37 686 125149779 125149119 0.000000e+00 706.0
9 TraesCS5B01G097200 chr5A 91.437 327 21 6 7332 7652 125139314 125138989 7.050000e-120 442.0
10 TraesCS5B01G097200 chr5A 94.975 199 5 2 1956 2150 125148298 125148101 2.680000e-79 307.0
11 TraesCS5B01G097200 chr5A 93.220 118 4 4 7176 7291 125143251 125143136 3.670000e-38 171.0
12 TraesCS5B01G097200 chr5A 82.759 87 11 4 222 306 565414324 565414408 2.960000e-09 75.0
13 TraesCS5B01G097200 chr5A 94.444 36 2 0 222 257 514433781 514433746 1.000000e-03 56.5
14 TraesCS5B01G097200 chr5A 100.000 29 0 0 229 257 670499918 670499946 4.000000e-03 54.7
15 TraesCS5B01G097200 chr5A 100.000 28 0 0 229 256 109930546 109930573 1.400000e-02 52.8
16 TraesCS5B01G097200 chr5D 94.969 1630 58 8 5119 6727 116745515 116747141 0.000000e+00 2534.0
17 TraesCS5B01G097200 chr5D 91.196 1488 76 20 1 1464 116740927 116742383 0.000000e+00 1971.0
18 TraesCS5B01G097200 chr5D 90.737 1479 68 19 3354 4779 116743635 116745097 0.000000e+00 1908.0
19 TraesCS5B01G097200 chr5D 92.526 1057 59 15 2230 3275 116742591 116743638 0.000000e+00 1496.0
20 TraesCS5B01G097200 chr5D 93.640 456 16 8 6842 7291 116747357 116747805 0.000000e+00 669.0
21 TraesCS5B01G097200 chr5D 94.556 349 17 2 4763 5110 116745049 116745396 8.740000e-149 538.0
22 TraesCS5B01G097200 chr5D 91.057 369 12 8 7290 7652 116747862 116748215 5.370000e-131 479.0
23 TraesCS5B01G097200 chr5D 94.924 197 5 2 1956 2147 116742393 116742589 3.470000e-78 303.0
24 TraesCS5B01G097200 chr5D 99.153 118 1 0 6726 6843 116747172 116747289 6.010000e-51 213.0
25 TraesCS5B01G097200 chrUn 96.639 119 4 0 1466 1584 304650110 304649992 1.680000e-46 198.0
26 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 86511566 86511691 2.190000e-40 178.0
27 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 170985719 170985844 2.190000e-40 178.0
28 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 189401826 189401701 2.190000e-40 178.0
29 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 251414726 251414851 2.190000e-40 178.0
30 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 260205270 260205395 2.190000e-40 178.0
31 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 264055223 264055348 2.190000e-40 178.0
32 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 266525153 266525278 2.190000e-40 178.0
33 TraesCS5B01G097200 chrUn 92.063 126 10 0 1 126 270910765 270910890 2.190000e-40 178.0
34 TraesCS5B01G097200 chrUn 92.632 95 5 2 3271 3363 132121235 132121141 1.340000e-27 135.0
35 TraesCS5B01G097200 chr7D 93.069 101 5 2 3261 3359 136013411 136013311 6.190000e-31 147.0
36 TraesCS5B01G097200 chr7D 84.706 85 12 1 222 306 131304508 131304591 4.920000e-12 84.2
37 TraesCS5B01G097200 chr7D 82.353 85 13 2 223 306 124626759 124626842 1.070000e-08 73.1
38 TraesCS5B01G097200 chr4B 95.506 89 3 1 3270 3357 575206323 575206411 2.880000e-29 141.0
39 TraesCS5B01G097200 chr4B 97.368 76 2 0 2146 2221 664775717 664775642 6.230000e-26 130.0
40 TraesCS5B01G097200 chr4B 93.902 82 5 0 1466 1547 183611011 183611092 2.900000e-24 124.0
41 TraesCS5B01G097200 chr1D 95.506 89 3 1 3272 3359 467803508 467803596 2.880000e-29 141.0
42 TraesCS5B01G097200 chr3B 91.837 98 7 1 3274 3370 765013435 765013532 1.340000e-27 135.0
43 TraesCS5B01G097200 chr3B 90.909 99 8 1 3260 3357 406868780 406868878 1.730000e-26 132.0
44 TraesCS5B01G097200 chr3B 97.297 74 2 0 2149 2222 110452068 110451995 8.060000e-25 126.0
45 TraesCS5B01G097200 chr1B 91.919 99 4 4 3274 3368 625931375 625931473 1.340000e-27 135.0
46 TraesCS5B01G097200 chr6A 88.496 113 10 3 3250 3361 610209042 610209152 4.820000e-27 134.0
47 TraesCS5B01G097200 chr6D 97.297 74 2 0 2148 2221 382547318 382547391 8.060000e-25 126.0
48 TraesCS5B01G097200 chr6D 96.053 76 3 0 2146 2221 200398813 200398738 2.900000e-24 124.0
49 TraesCS5B01G097200 chr4D 97.297 74 2 0 2148 2221 12354697 12354770 8.060000e-25 126.0
50 TraesCS5B01G097200 chr4D 95.062 81 3 1 2141 2221 482704107 482704186 8.060000e-25 126.0
51 TraesCS5B01G097200 chr4D 100.000 28 0 0 229 256 352753960 352753933 1.400000e-02 52.8
52 TraesCS5B01G097200 chr2D 96.104 77 3 0 2142 2218 27500994 27501070 8.060000e-25 126.0
53 TraesCS5B01G097200 chr2D 96.154 78 2 1 2145 2221 445894985 445894908 8.060000e-25 126.0
54 TraesCS5B01G097200 chr2A 90.909 88 8 0 2147 2234 728356824 728356737 1.350000e-22 119.0
55 TraesCS5B01G097200 chr7B 85.047 107 16 0 5823 5929 642548316 642548210 8.120000e-20 110.0
56 TraesCS5B01G097200 chr3A 82.558 86 13 2 222 306 44317520 44317436 2.960000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G097200 chr5B 128463766 128471417 7651 False 6740.500000 10539 100.000000 1 7652 2 chr5B.!!$F2 7651
1 TraesCS5B01G097200 chr5A 125138989 125149779 10790 True 1304.285714 5012 91.314714 37 7652 7 chr5A.!!$R2 7615
2 TraesCS5B01G097200 chr5D 116740927 116748215 7288 False 1123.444444 2534 93.639778 1 7652 9 chr5D.!!$F1 7651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.112412 ATGGTTTCCAGGCTCCGTTT 59.888 50.000 0.00 0.00 36.75 3.60 F
1535 1626 0.397254 GAGGGGGCAGCTAGTGAGTA 60.397 60.000 0.00 0.00 0.00 2.59 F
1580 1671 0.178926 TGGACTCGGGACCTTGGTAA 60.179 55.000 5.17 0.00 0.00 2.85 F
2169 2265 0.393267 CTCCCGCCGTCCCAAAATAA 60.393 55.000 0.00 0.00 0.00 1.40 F
2172 2268 0.450184 CCGCCGTCCCAAAATAAGTG 59.550 55.000 0.00 0.00 0.00 3.16 F
2255 2351 0.611200 ATAGCTTACCACACGTGCCA 59.389 50.000 17.22 0.00 0.00 4.92 F
3958 4096 2.019984 GCCATTCCTTGCCTCAGTAAG 58.980 52.381 0.00 0.00 35.63 2.34 F
4275 4413 1.658994 TTGACCGTGACACACCTTTC 58.341 50.000 6.37 0.00 0.00 2.62 F
5082 5260 0.255033 CCTTGTAAGCCCAGGGGTAC 59.745 60.000 11.75 10.17 37.65 3.34 F
6128 6438 0.179059 TGTTCTTCTGCACGGAAGCA 60.179 50.000 13.35 1.11 41.55 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1561 1652 0.178926 TTACCAAGGTCCCGAGTCCA 60.179 55.000 0.00 0.0 0.00 4.02 R
2680 2778 0.531974 GAACCAACTGGCTCACGTCA 60.532 55.000 0.00 0.0 39.32 4.35 R
3167 3270 1.003580 AGCAGCTAAAAGTGCCTAGCA 59.996 47.619 0.00 0.0 42.51 3.49 R
3958 4096 0.815615 CCGGGAATTGCTCTACTGCC 60.816 60.000 0.00 0.0 0.00 4.85 R
4003 4141 5.719173 AGCATCTGTAGAGTCAGAAAACTC 58.281 41.667 0.62 0.0 45.65 3.01 R
4155 4293 7.870826 TGATATAGTAATGGCCAAATCGTTTG 58.129 34.615 10.96 4.2 40.32 2.93 R
4887 5065 1.300971 GAAGTCCAGATGCAGCGCAA 61.301 55.000 11.47 0.0 43.62 4.85 R
6128 6438 2.024414 GTTTTGCAGGGTCAACAGTCT 58.976 47.619 0.00 0.0 0.00 3.24 R
6447 6757 1.211703 TCACTTGTGTTGGGCTCTTCA 59.788 47.619 0.46 0.0 0.00 3.02 R
7140 7557 0.032416 GGGGTGTGCCTAGACCTAGA 60.032 60.000 5.67 0.0 40.05 2.43 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 0.112412 ATGGTTTCCAGGCTCCGTTT 59.888 50.000 0.00 0.00 36.75 3.60
48 49 3.054728 TCCAGGCTCCGTTTGATGATTTA 60.055 43.478 0.00 0.00 0.00 1.40
59 60 5.496568 CGTTTGATGATTTAACGATATCGCG 59.503 40.000 24.59 10.76 45.36 5.87
69 70 1.007336 CGATATCGCGGTACCAAGCC 61.007 60.000 12.95 0.00 0.00 4.35
80 81 2.359848 GGTACCAAGCCAGAACGTTTTT 59.640 45.455 7.15 0.00 0.00 1.94
129 130 3.476552 TCCTTTGGTGCACACTAAGAAG 58.523 45.455 20.43 11.63 33.37 2.85
134 135 3.287222 TGGTGCACACTAAGAAGCTTTT 58.713 40.909 20.43 0.00 0.00 2.27
149 150 5.760253 AGAAGCTTTTCACAAGAGAATCGAA 59.240 36.000 0.00 0.00 42.67 3.71
157 158 9.658799 TTTTCACAAGAGAATCGAATCTATTCT 57.341 29.630 7.39 9.40 44.43 2.40
174 176 2.590291 TGGAAGAAAGCGCACGCA 60.590 55.556 18.24 0.00 44.88 5.24
175 177 1.915614 CTGGAAGAAAGCGCACGCAT 61.916 55.000 18.24 1.53 39.36 4.73
227 230 8.718656 ACCCTCAAAAGATTAAGCTGATACTAT 58.281 33.333 0.00 0.00 0.00 2.12
237 240 8.941995 ATTAAGCTGATACTATCTCTGTACCA 57.058 34.615 0.00 0.00 0.00 3.25
319 323 7.979786 TTGAGGGAGTAGATCTTAAGATTGT 57.020 36.000 18.88 11.96 34.37 2.71
350 370 3.719268 AGATGCACCTTGTAATCCACA 57.281 42.857 0.00 0.00 34.51 4.17
351 371 3.614092 AGATGCACCTTGTAATCCACAG 58.386 45.455 0.00 0.00 38.72 3.66
352 372 3.264193 AGATGCACCTTGTAATCCACAGA 59.736 43.478 0.00 0.00 38.72 3.41
353 373 3.719268 TGCACCTTGTAATCCACAGAT 57.281 42.857 0.00 0.00 38.72 2.90
354 374 4.835284 TGCACCTTGTAATCCACAGATA 57.165 40.909 0.00 0.00 38.72 1.98
355 375 5.372343 TGCACCTTGTAATCCACAGATAT 57.628 39.130 0.00 0.00 38.72 1.63
356 376 5.125356 TGCACCTTGTAATCCACAGATATG 58.875 41.667 0.00 0.00 38.72 1.78
357 377 5.126067 GCACCTTGTAATCCACAGATATGT 58.874 41.667 0.00 0.00 38.72 2.29
358 378 5.237344 GCACCTTGTAATCCACAGATATGTC 59.763 44.000 0.00 0.00 38.72 3.06
359 379 6.348498 CACCTTGTAATCCACAGATATGTCA 58.652 40.000 0.00 0.00 38.72 3.58
360 380 6.994496 CACCTTGTAATCCACAGATATGTCAT 59.006 38.462 0.00 0.00 38.72 3.06
361 381 8.150296 CACCTTGTAATCCACAGATATGTCATA 58.850 37.037 0.00 0.00 38.72 2.15
362 382 8.150945 ACCTTGTAATCCACAGATATGTCATAC 58.849 37.037 0.00 0.00 38.72 2.39
363 383 7.604164 CCTTGTAATCCACAGATATGTCATACC 59.396 40.741 0.00 0.00 38.72 2.73
364 384 7.610580 TGTAATCCACAGATATGTCATACCA 57.389 36.000 0.00 0.00 31.89 3.25
365 385 8.206126 TGTAATCCACAGATATGTCATACCAT 57.794 34.615 0.00 0.00 31.89 3.55
396 416 4.898607 GCGGATGGCCTGGAATAA 57.101 55.556 3.32 0.00 34.80 1.40
420 440 1.810151 TCCAAAAAGTATGCGAGCACC 59.190 47.619 0.00 0.00 0.00 5.01
427 449 1.006220 TATGCGAGCACCCATAGCG 60.006 57.895 0.00 0.00 37.01 4.26
447 469 5.651530 AGCGAATCTAAGACTTGAATTCGA 58.348 37.500 30.63 0.00 40.99 3.71
454 476 6.166279 TCTAAGACTTGAATTCGAATGCACT 58.834 36.000 18.72 9.89 0.00 4.40
461 483 3.189080 TGAATTCGAATGCACTGGTTCTG 59.811 43.478 15.13 0.00 0.00 3.02
548 584 3.874392 TGAAGACATTCAGATGCGAGA 57.126 42.857 0.00 0.00 40.54 4.04
550 586 2.593346 AGACATTCAGATGCGAGACC 57.407 50.000 0.00 0.00 36.72 3.85
568 604 4.786425 AGACCTGGATTCAAGATTAAGCC 58.214 43.478 0.00 0.00 32.93 4.35
616 652 6.493802 TGTCCTAGACTTCATCAACAAGTAGT 59.506 38.462 0.00 0.00 34.10 2.73
617 653 7.668469 TGTCCTAGACTTCATCAACAAGTAGTA 59.332 37.037 0.00 0.00 34.10 1.82
618 654 8.185505 GTCCTAGACTTCATCAACAAGTAGTAG 58.814 40.741 0.00 0.00 34.10 2.57
619 655 7.889073 TCCTAGACTTCATCAACAAGTAGTAGT 59.111 37.037 0.00 0.00 34.10 2.73
620 656 9.175312 CCTAGACTTCATCAACAAGTAGTAGTA 57.825 37.037 0.00 0.00 34.10 1.82
762 831 2.595386 GGGCAAAAGCGACTTTGTATG 58.405 47.619 10.26 5.34 38.35 2.39
877 947 2.413963 GCAGCTCTCCTCTCTCGCA 61.414 63.158 0.00 0.00 0.00 5.10
1018 1102 3.119531 GCTGATGGAGGACGAGATGATAG 60.120 52.174 0.00 0.00 0.00 2.08
1060 1144 2.277072 CAGAGAGGGAGCGGAGGA 59.723 66.667 0.00 0.00 0.00 3.71
1284 1368 2.125391 TGCTGATCGCCAGTGCTC 60.125 61.111 7.00 0.00 44.71 4.26
1292 1376 2.388232 CGCCAGTGCTCCCGTTAAC 61.388 63.158 0.00 0.00 34.43 2.01
1299 1383 1.518792 GCTCCCGTTAACGCTCTCC 60.519 63.158 22.43 5.45 38.18 3.71
1352 1438 7.045290 GCGCGAGATTTTATTTTTCTCTTCTTC 60.045 37.037 12.10 0.00 34.94 2.87
1368 1459 5.713025 TCTTCTTCATTTATTTGGTGCTGC 58.287 37.500 0.00 0.00 0.00 5.25
1464 1555 8.961294 TTTGATCTTGTTTGGATTCACATTTT 57.039 26.923 0.00 0.00 0.00 1.82
1469 1560 8.364129 TCTTGTTTGGATTCACATTTTAAAGC 57.636 30.769 0.00 0.00 0.00 3.51
1470 1561 8.203485 TCTTGTTTGGATTCACATTTTAAAGCT 58.797 29.630 0.00 0.00 0.00 3.74
1471 1562 7.712264 TGTTTGGATTCACATTTTAAAGCTG 57.288 32.000 0.00 0.00 0.00 4.24
1472 1563 6.705381 TGTTTGGATTCACATTTTAAAGCTGG 59.295 34.615 0.00 0.00 0.00 4.85
1473 1564 6.662865 TTGGATTCACATTTTAAAGCTGGA 57.337 33.333 0.00 0.00 0.00 3.86
1474 1565 6.662865 TGGATTCACATTTTAAAGCTGGAA 57.337 33.333 0.00 5.90 0.00 3.53
1475 1566 7.243604 TGGATTCACATTTTAAAGCTGGAAT 57.756 32.000 0.00 11.72 0.00 3.01
1476 1567 7.098477 TGGATTCACATTTTAAAGCTGGAATG 58.902 34.615 14.26 0.00 36.00 2.67
1477 1568 7.099120 GGATTCACATTTTAAAGCTGGAATGT 58.901 34.615 9.94 9.94 41.85 2.71
1478 1569 7.603784 GGATTCACATTTTAAAGCTGGAATGTT 59.396 33.333 12.03 2.61 39.85 2.71
1479 1570 8.907222 ATTCACATTTTAAAGCTGGAATGTTT 57.093 26.923 12.03 0.00 39.85 2.83
1480 1571 9.995003 ATTCACATTTTAAAGCTGGAATGTTTA 57.005 25.926 12.03 6.39 39.85 2.01
1481 1572 9.823647 TTCACATTTTAAAGCTGGAATGTTTAA 57.176 25.926 12.03 8.60 39.85 1.52
1482 1573 9.823647 TCACATTTTAAAGCTGGAATGTTTAAA 57.176 25.926 12.03 4.49 39.85 1.52
1488 1579 9.691362 TTTAAAGCTGGAATGTTTAAAGATGAC 57.309 29.630 0.00 0.00 33.03 3.06
1489 1580 6.899393 AAGCTGGAATGTTTAAAGATGACA 57.101 33.333 0.00 1.08 0.00 3.58
1490 1581 7.472334 AAGCTGGAATGTTTAAAGATGACAT 57.528 32.000 0.00 0.00 35.65 3.06
1491 1582 7.472334 AGCTGGAATGTTTAAAGATGACATT 57.528 32.000 0.00 0.53 44.25 2.71
1492 1583 8.579850 AGCTGGAATGTTTAAAGATGACATTA 57.420 30.769 0.00 0.00 42.31 1.90
1493 1584 8.680903 AGCTGGAATGTTTAAAGATGACATTAG 58.319 33.333 0.00 0.00 42.31 1.73
1494 1585 8.677300 GCTGGAATGTTTAAAGATGACATTAGA 58.323 33.333 0.00 0.00 42.31 2.10
1496 1587 9.177608 TGGAATGTTTAAAGATGACATTAGAGG 57.822 33.333 0.00 0.00 42.31 3.69
1497 1588 8.131731 GGAATGTTTAAAGATGACATTAGAGGC 58.868 37.037 0.00 0.00 42.31 4.70
1498 1589 8.814038 AATGTTTAAAGATGACATTAGAGGCT 57.186 30.769 0.00 0.00 40.95 4.58
1499 1590 8.814038 ATGTTTAAAGATGACATTAGAGGCTT 57.186 30.769 0.00 0.00 30.22 4.35
1500 1591 8.635765 TGTTTAAAGATGACATTAGAGGCTTT 57.364 30.769 0.00 0.00 0.00 3.51
1501 1592 8.514594 TGTTTAAAGATGACATTAGAGGCTTTG 58.485 33.333 7.47 0.00 0.00 2.77
1502 1593 8.730680 GTTTAAAGATGACATTAGAGGCTTTGA 58.269 33.333 7.47 0.00 0.00 2.69
1503 1594 8.862325 TTAAAGATGACATTAGAGGCTTTGAA 57.138 30.769 7.47 0.00 0.00 2.69
1504 1595 6.998968 AAGATGACATTAGAGGCTTTGAAG 57.001 37.500 0.00 0.00 0.00 3.02
1505 1596 6.305272 AGATGACATTAGAGGCTTTGAAGA 57.695 37.500 0.00 0.00 0.00 2.87
1506 1597 6.347696 AGATGACATTAGAGGCTTTGAAGAG 58.652 40.000 0.00 0.00 0.00 2.85
1507 1598 4.256920 TGACATTAGAGGCTTTGAAGAGC 58.743 43.478 0.00 0.00 41.96 4.09
1508 1599 4.019860 TGACATTAGAGGCTTTGAAGAGCT 60.020 41.667 0.00 0.00 42.32 4.09
1509 1600 5.187772 TGACATTAGAGGCTTTGAAGAGCTA 59.812 40.000 0.00 0.00 42.32 3.32
1510 1601 5.669477 ACATTAGAGGCTTTGAAGAGCTAG 58.331 41.667 0.00 0.00 42.32 3.42
1511 1602 4.744795 TTAGAGGCTTTGAAGAGCTAGG 57.255 45.455 0.00 0.00 42.32 3.02
1512 1603 1.209261 AGAGGCTTTGAAGAGCTAGGC 59.791 52.381 0.00 0.00 42.32 3.93
1513 1604 0.987294 AGGCTTTGAAGAGCTAGGCA 59.013 50.000 8.06 0.00 42.32 4.75
1514 1605 1.065564 AGGCTTTGAAGAGCTAGGCAG 60.066 52.381 8.06 0.00 42.32 4.85
1515 1606 1.339535 GGCTTTGAAGAGCTAGGCAGT 60.340 52.381 0.89 0.00 42.32 4.40
1516 1607 1.736681 GCTTTGAAGAGCTAGGCAGTG 59.263 52.381 0.00 0.00 39.57 3.66
1517 1608 2.613977 GCTTTGAAGAGCTAGGCAGTGA 60.614 50.000 0.00 0.00 39.57 3.41
1518 1609 3.260740 CTTTGAAGAGCTAGGCAGTGAG 58.739 50.000 0.00 0.00 0.00 3.51
1519 1610 1.189752 TGAAGAGCTAGGCAGTGAGG 58.810 55.000 0.00 0.00 0.00 3.86
1520 1611 0.463620 GAAGAGCTAGGCAGTGAGGG 59.536 60.000 0.00 0.00 0.00 4.30
1521 1612 0.980231 AAGAGCTAGGCAGTGAGGGG 60.980 60.000 0.00 0.00 0.00 4.79
1522 1613 2.366167 AGCTAGGCAGTGAGGGGG 60.366 66.667 0.00 0.00 0.00 5.40
1523 1614 4.182433 GCTAGGCAGTGAGGGGGC 62.182 72.222 0.00 0.00 0.00 5.80
1524 1615 2.688666 CTAGGCAGTGAGGGGGCA 60.689 66.667 0.00 0.00 0.00 5.36
1525 1616 2.688666 TAGGCAGTGAGGGGGCAG 60.689 66.667 0.00 0.00 0.00 4.85
1528 1619 3.402681 GCAGTGAGGGGGCAGCTA 61.403 66.667 0.00 0.00 0.00 3.32
1529 1620 2.906458 CAGTGAGGGGGCAGCTAG 59.094 66.667 0.00 0.00 0.00 3.42
1530 1621 1.992277 CAGTGAGGGGGCAGCTAGT 60.992 63.158 0.00 0.00 0.00 2.57
1531 1622 1.992277 AGTGAGGGGGCAGCTAGTG 60.992 63.158 0.00 0.00 0.00 2.74
1532 1623 1.990060 GTGAGGGGGCAGCTAGTGA 60.990 63.158 0.00 0.00 0.00 3.41
1533 1624 1.687146 TGAGGGGGCAGCTAGTGAG 60.687 63.158 0.00 0.00 0.00 3.51
1534 1625 1.687493 GAGGGGGCAGCTAGTGAGT 60.687 63.158 0.00 0.00 0.00 3.41
1535 1626 0.397254 GAGGGGGCAGCTAGTGAGTA 60.397 60.000 0.00 0.00 0.00 2.59
1536 1627 0.397816 AGGGGGCAGCTAGTGAGTAG 60.398 60.000 0.00 0.00 0.00 2.57
1537 1628 0.688087 GGGGGCAGCTAGTGAGTAGT 60.688 60.000 0.00 0.00 0.00 2.73
1538 1629 1.196012 GGGGCAGCTAGTGAGTAGTT 58.804 55.000 0.00 0.00 0.00 2.24
1539 1630 1.555533 GGGGCAGCTAGTGAGTAGTTT 59.444 52.381 0.00 0.00 0.00 2.66
1540 1631 2.622436 GGGCAGCTAGTGAGTAGTTTG 58.378 52.381 0.00 0.00 0.00 2.93
1541 1632 2.028020 GGGCAGCTAGTGAGTAGTTTGT 60.028 50.000 0.00 0.00 0.00 2.83
1542 1633 3.194968 GGGCAGCTAGTGAGTAGTTTGTA 59.805 47.826 0.00 0.00 0.00 2.41
1543 1634 4.322499 GGGCAGCTAGTGAGTAGTTTGTAA 60.322 45.833 0.00 0.00 0.00 2.41
1544 1635 5.420409 GGCAGCTAGTGAGTAGTTTGTAAT 58.580 41.667 0.00 0.00 0.00 1.89
1545 1636 6.406624 GGGCAGCTAGTGAGTAGTTTGTAATA 60.407 42.308 0.00 0.00 0.00 0.98
1546 1637 6.476053 GGCAGCTAGTGAGTAGTTTGTAATAC 59.524 42.308 0.00 0.00 0.00 1.89
1547 1638 7.033791 GCAGCTAGTGAGTAGTTTGTAATACA 58.966 38.462 0.00 0.00 0.00 2.29
1548 1639 7.544566 GCAGCTAGTGAGTAGTTTGTAATACAA 59.455 37.037 1.08 1.08 36.11 2.41
1549 1640 9.077674 CAGCTAGTGAGTAGTTTGTAATACAAG 57.922 37.037 5.94 0.00 39.53 3.16
1550 1641 8.804204 AGCTAGTGAGTAGTTTGTAATACAAGT 58.196 33.333 5.94 1.27 39.53 3.16
1551 1642 9.074443 GCTAGTGAGTAGTTTGTAATACAAGTC 57.926 37.037 5.94 4.51 39.53 3.01
1552 1643 9.275231 CTAGTGAGTAGTTTGTAATACAAGTCG 57.725 37.037 5.94 0.00 39.53 4.18
1553 1644 7.088905 AGTGAGTAGTTTGTAATACAAGTCGG 58.911 38.462 5.94 0.00 39.53 4.79
1554 1645 6.865205 GTGAGTAGTTTGTAATACAAGTCGGT 59.135 38.462 5.94 0.00 39.53 4.69
1555 1646 6.864685 TGAGTAGTTTGTAATACAAGTCGGTG 59.135 38.462 5.94 0.00 39.53 4.94
1556 1647 5.636543 AGTAGTTTGTAATACAAGTCGGTGC 59.363 40.000 5.94 0.00 39.53 5.01
1557 1648 4.638304 AGTTTGTAATACAAGTCGGTGCT 58.362 39.130 5.94 0.00 39.53 4.40
1558 1649 5.061179 AGTTTGTAATACAAGTCGGTGCTT 58.939 37.500 5.94 0.00 39.53 3.91
1563 1654 3.343972 CAAGTCGGTGCTTGGTGG 58.656 61.111 7.19 0.00 41.41 4.61
1564 1655 1.227823 CAAGTCGGTGCTTGGTGGA 60.228 57.895 7.19 0.00 41.41 4.02
1565 1656 1.227853 AAGTCGGTGCTTGGTGGAC 60.228 57.895 0.00 0.00 36.19 4.02
1566 1657 1.696097 AAGTCGGTGCTTGGTGGACT 61.696 55.000 0.00 0.00 39.50 3.85
1567 1658 1.668151 GTCGGTGCTTGGTGGACTC 60.668 63.158 0.00 0.00 37.18 3.36
1568 1659 2.738521 CGGTGCTTGGTGGACTCG 60.739 66.667 0.00 0.00 37.18 4.18
1569 1660 2.358737 GGTGCTTGGTGGACTCGG 60.359 66.667 0.00 0.00 37.18 4.63
1570 1661 2.358737 GTGCTTGGTGGACTCGGG 60.359 66.667 0.00 0.00 33.97 5.14
1571 1662 2.525629 TGCTTGGTGGACTCGGGA 60.526 61.111 0.00 0.00 0.00 5.14
1572 1663 2.047179 GCTTGGTGGACTCGGGAC 60.047 66.667 0.00 0.00 0.00 4.46
1573 1664 2.663196 CTTGGTGGACTCGGGACC 59.337 66.667 0.00 0.00 0.00 4.46
1574 1665 1.913762 CTTGGTGGACTCGGGACCT 60.914 63.158 5.17 0.00 0.00 3.85
1575 1666 1.460689 TTGGTGGACTCGGGACCTT 60.461 57.895 5.17 0.00 0.00 3.50
1576 1667 1.764571 TTGGTGGACTCGGGACCTTG 61.765 60.000 5.17 0.00 0.00 3.61
1577 1668 2.663196 GTGGACTCGGGACCTTGG 59.337 66.667 5.17 0.00 0.00 3.61
1578 1669 2.203182 TGGACTCGGGACCTTGGT 59.797 61.111 5.17 0.00 0.00 3.67
1579 1670 0.901580 GTGGACTCGGGACCTTGGTA 60.902 60.000 5.17 0.00 0.00 3.25
1580 1671 0.178926 TGGACTCGGGACCTTGGTAA 60.179 55.000 5.17 0.00 0.00 2.85
1581 1672 1.201424 GGACTCGGGACCTTGGTAAT 58.799 55.000 0.00 0.00 0.00 1.89
1582 1673 1.558294 GGACTCGGGACCTTGGTAATT 59.442 52.381 0.00 0.00 0.00 1.40
1583 1674 2.767960 GGACTCGGGACCTTGGTAATTA 59.232 50.000 0.00 0.00 0.00 1.40
1584 1675 3.181468 GGACTCGGGACCTTGGTAATTAG 60.181 52.174 0.00 0.00 0.00 1.73
1585 1676 2.770232 ACTCGGGACCTTGGTAATTAGG 59.230 50.000 0.00 0.00 37.56 2.69
1586 1677 3.036091 CTCGGGACCTTGGTAATTAGGA 58.964 50.000 0.00 0.00 35.45 2.94
1587 1678 3.646637 CTCGGGACCTTGGTAATTAGGAT 59.353 47.826 0.00 0.00 35.45 3.24
1588 1679 4.042174 TCGGGACCTTGGTAATTAGGATT 58.958 43.478 0.00 0.00 35.45 3.01
1589 1680 4.475747 TCGGGACCTTGGTAATTAGGATTT 59.524 41.667 0.00 0.00 35.45 2.17
1590 1681 5.044698 TCGGGACCTTGGTAATTAGGATTTT 60.045 40.000 0.00 0.00 35.45 1.82
1591 1682 5.067283 CGGGACCTTGGTAATTAGGATTTTG 59.933 44.000 0.00 0.00 35.45 2.44
1592 1683 5.362717 GGGACCTTGGTAATTAGGATTTTGG 59.637 44.000 0.00 0.00 35.45 3.28
2020 2111 4.801891 CTTTCTTATCTTGCTTGCTTGCA 58.198 39.130 0.27 0.27 41.65 4.08
2021 2112 4.430137 TTCTTATCTTGCTTGCTTGCAG 57.570 40.909 4.58 1.13 44.27 4.41
2074 2169 5.751509 TCCGTGAATTGATTACTTCCATACG 59.248 40.000 0.00 0.00 0.00 3.06
2095 2190 6.663944 ACGTAGCAAGTTATTTCTCATTCC 57.336 37.500 0.00 0.00 0.00 3.01
2148 2244 7.009540 CGTCGTTAGTTCCGAGGTTTATTTTAT 59.990 37.037 0.00 0.00 35.97 1.40
2149 2245 9.301153 GTCGTTAGTTCCGAGGTTTATTTTATA 57.699 33.333 0.00 0.00 34.56 0.98
2150 2246 9.301153 TCGTTAGTTCCGAGGTTTATTTTATAC 57.699 33.333 0.00 0.00 0.00 1.47
2151 2247 9.305925 CGTTAGTTCCGAGGTTTATTTTATACT 57.694 33.333 0.00 0.00 0.00 2.12
2153 2249 9.822185 TTAGTTCCGAGGTTTATTTTATACTCC 57.178 33.333 0.00 0.00 0.00 3.85
2154 2250 7.278135 AGTTCCGAGGTTTATTTTATACTCCC 58.722 38.462 0.00 0.00 0.00 4.30
2155 2251 5.846203 TCCGAGGTTTATTTTATACTCCCG 58.154 41.667 0.00 0.00 0.00 5.14
2156 2252 4.450080 CCGAGGTTTATTTTATACTCCCGC 59.550 45.833 0.00 0.00 0.00 6.13
2157 2253 4.450080 CGAGGTTTATTTTATACTCCCGCC 59.550 45.833 0.00 0.00 0.00 6.13
2158 2254 4.383173 AGGTTTATTTTATACTCCCGCCG 58.617 43.478 0.00 0.00 0.00 6.46
2159 2255 4.129380 GGTTTATTTTATACTCCCGCCGT 58.871 43.478 0.00 0.00 0.00 5.68
2160 2256 4.212004 GGTTTATTTTATACTCCCGCCGTC 59.788 45.833 0.00 0.00 0.00 4.79
2161 2257 2.538512 ATTTTATACTCCCGCCGTCC 57.461 50.000 0.00 0.00 0.00 4.79
2162 2258 0.465287 TTTTATACTCCCGCCGTCCC 59.535 55.000 0.00 0.00 0.00 4.46
2163 2259 0.687098 TTTATACTCCCGCCGTCCCA 60.687 55.000 0.00 0.00 0.00 4.37
2164 2260 0.687098 TTATACTCCCGCCGTCCCAA 60.687 55.000 0.00 0.00 0.00 4.12
2165 2261 0.687098 TATACTCCCGCCGTCCCAAA 60.687 55.000 0.00 0.00 0.00 3.28
2166 2262 1.555477 ATACTCCCGCCGTCCCAAAA 61.555 55.000 0.00 0.00 0.00 2.44
2167 2263 1.555477 TACTCCCGCCGTCCCAAAAT 61.555 55.000 0.00 0.00 0.00 1.82
2168 2264 1.222387 CTCCCGCCGTCCCAAAATA 59.778 57.895 0.00 0.00 0.00 1.40
2169 2265 0.393267 CTCCCGCCGTCCCAAAATAA 60.393 55.000 0.00 0.00 0.00 1.40
2170 2266 0.393267 TCCCGCCGTCCCAAAATAAG 60.393 55.000 0.00 0.00 0.00 1.73
2171 2267 0.678684 CCCGCCGTCCCAAAATAAGT 60.679 55.000 0.00 0.00 0.00 2.24
2172 2268 0.450184 CCGCCGTCCCAAAATAAGTG 59.550 55.000 0.00 0.00 0.00 3.16
2173 2269 1.161843 CGCCGTCCCAAAATAAGTGT 58.838 50.000 0.00 0.00 0.00 3.55
2174 2270 1.129811 CGCCGTCCCAAAATAAGTGTC 59.870 52.381 0.00 0.00 0.00 3.67
2175 2271 2.433436 GCCGTCCCAAAATAAGTGTCT 58.567 47.619 0.00 0.00 0.00 3.41
2176 2272 2.418976 GCCGTCCCAAAATAAGTGTCTC 59.581 50.000 0.00 0.00 0.00 3.36
2177 2273 3.670625 CCGTCCCAAAATAAGTGTCTCA 58.329 45.455 0.00 0.00 0.00 3.27
2178 2274 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2179 2275 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2180 2276 4.083484 CGTCCCAAAATAAGTGTCTCAACC 60.083 45.833 0.00 0.00 0.00 3.77
2181 2277 5.070685 GTCCCAAAATAAGTGTCTCAACCT 58.929 41.667 0.00 0.00 0.00 3.50
2182 2278 5.535030 GTCCCAAAATAAGTGTCTCAACCTT 59.465 40.000 0.00 0.00 0.00 3.50
2183 2279 6.713450 GTCCCAAAATAAGTGTCTCAACCTTA 59.287 38.462 0.00 0.00 0.00 2.69
2184 2280 6.940298 TCCCAAAATAAGTGTCTCAACCTTAG 59.060 38.462 0.00 0.00 0.00 2.18
2185 2281 6.715264 CCCAAAATAAGTGTCTCAACCTTAGT 59.285 38.462 0.00 0.00 0.00 2.24
2186 2282 7.881232 CCCAAAATAAGTGTCTCAACCTTAGTA 59.119 37.037 0.00 0.00 0.00 1.82
2187 2283 8.718734 CCAAAATAAGTGTCTCAACCTTAGTAC 58.281 37.037 0.00 0.00 0.00 2.73
2188 2284 9.268268 CAAAATAAGTGTCTCAACCTTAGTACA 57.732 33.333 0.00 0.00 0.00 2.90
2189 2285 9.841295 AAAATAAGTGTCTCAACCTTAGTACAA 57.159 29.630 0.00 0.00 0.00 2.41
2190 2286 8.828688 AATAAGTGTCTCAACCTTAGTACAAC 57.171 34.615 0.00 0.00 0.00 3.32
2191 2287 6.481434 AAGTGTCTCAACCTTAGTACAACT 57.519 37.500 0.00 0.00 0.00 3.16
2192 2288 6.481434 AGTGTCTCAACCTTAGTACAACTT 57.519 37.500 0.00 0.00 0.00 2.66
2193 2289 6.885922 AGTGTCTCAACCTTAGTACAACTTT 58.114 36.000 0.00 0.00 0.00 2.66
2194 2290 6.761714 AGTGTCTCAACCTTAGTACAACTTTG 59.238 38.462 0.00 0.00 0.00 2.77
2195 2291 6.537660 GTGTCTCAACCTTAGTACAACTTTGT 59.462 38.462 0.00 0.00 44.86 2.83
2196 2292 7.707893 GTGTCTCAACCTTAGTACAACTTTGTA 59.292 37.037 0.00 0.00 42.35 2.41
2222 2318 8.985805 ACTAAAGTTAATACAAAGTTGAGACGG 58.014 33.333 0.00 0.00 28.54 4.79
2223 2319 9.199982 CTAAAGTTAATACAAAGTTGAGACGGA 57.800 33.333 0.00 0.00 0.00 4.69
2224 2320 7.653767 AAGTTAATACAAAGTTGAGACGGAG 57.346 36.000 0.00 0.00 0.00 4.63
2225 2321 6.164176 AGTTAATACAAAGTTGAGACGGAGG 58.836 40.000 0.00 0.00 0.00 4.30
2226 2322 3.611766 ATACAAAGTTGAGACGGAGGG 57.388 47.619 0.00 0.00 0.00 4.30
2227 2323 1.420430 ACAAAGTTGAGACGGAGGGA 58.580 50.000 0.00 0.00 0.00 4.20
2228 2324 1.766496 ACAAAGTTGAGACGGAGGGAA 59.234 47.619 0.00 0.00 0.00 3.97
2255 2351 0.611200 ATAGCTTACCACACGTGCCA 59.389 50.000 17.22 0.00 0.00 4.92
2297 2395 3.005684 AGGAAGCAATCGCAAATGTTTCA 59.994 39.130 10.01 0.00 42.27 2.69
2447 2545 6.186957 TCAGTATTATGGGTTGTCATGCTTT 58.813 36.000 0.00 0.00 0.00 3.51
2456 2554 3.491447 GGTTGTCATGCTTTGTCTTGCTT 60.491 43.478 0.00 0.00 0.00 3.91
2575 2673 7.416664 GCCTATTTCTTTGTTGGATTGATGCTA 60.417 37.037 0.00 0.00 0.00 3.49
2581 2679 6.602803 TCTTTGTTGGATTGATGCTATGCTAA 59.397 34.615 0.00 0.00 0.00 3.09
2587 2685 5.829391 TGGATTGATGCTATGCTAATTGTGT 59.171 36.000 0.00 0.00 0.00 3.72
2603 2701 7.495934 GCTAATTGTGTAGCATCTAGGAAAGAA 59.504 37.037 0.00 0.00 44.94 2.52
2634 2732 4.690748 GCTAGTAAGTGTGTGCATCTTTCA 59.309 41.667 0.00 0.00 0.00 2.69
2636 2734 5.618056 AGTAAGTGTGTGCATCTTTCATG 57.382 39.130 0.00 0.00 0.00 3.07
2638 2736 3.144657 AGTGTGTGCATCTTTCATGGA 57.855 42.857 0.00 0.00 0.00 3.41
2655 2753 3.998913 TGGATGGTGTGAAGCATCTAA 57.001 42.857 15.23 4.48 0.00 2.10
2665 2763 4.041567 TGTGAAGCATCTAAGGAAGGAACA 59.958 41.667 0.00 0.00 0.00 3.18
2680 2778 2.982488 AGGAACAGACCATGGAGAAACT 59.018 45.455 21.47 6.55 0.00 2.66
2721 2819 7.177744 GGTTCAGGATTTGGAAAAACCTGTATA 59.822 37.037 21.38 10.71 42.10 1.47
2722 2820 8.581578 GTTCAGGATTTGGAAAAACCTGTATAA 58.418 33.333 21.38 11.05 42.10 0.98
2723 2821 8.893563 TCAGGATTTGGAAAAACCTGTATAAT 57.106 30.769 21.38 0.00 42.10 1.28
2828 2926 8.966155 TTTTCTCCCCTATTTTAGGTCATTTT 57.034 30.769 0.19 0.00 44.73 1.82
2829 2927 8.966155 TTTCTCCCCTATTTTAGGTCATTTTT 57.034 30.769 0.19 0.00 44.73 1.94
2882 2981 4.009675 TCAGTTGTTCAGCTTCACTTTGT 58.990 39.130 0.00 0.00 0.00 2.83
2883 2982 4.458989 TCAGTTGTTCAGCTTCACTTTGTT 59.541 37.500 0.00 0.00 0.00 2.83
2888 2987 4.201812 TGTTCAGCTTCACTTTGTTTCTCG 60.202 41.667 0.00 0.00 0.00 4.04
2897 2996 5.938322 TCACTTTGTTTCTCGATATTTGGC 58.062 37.500 0.00 0.00 0.00 4.52
2909 3008 3.374988 CGATATTTGGCAGTGCTTCTTCA 59.625 43.478 16.11 0.36 0.00 3.02
2910 3009 4.495349 CGATATTTGGCAGTGCTTCTTCAG 60.495 45.833 16.11 0.00 0.00 3.02
2931 3030 5.468746 TCAGTTTTCCTATTCGGTTCACTTG 59.531 40.000 0.00 0.00 0.00 3.16
2965 3068 3.446310 TTTTTCTTTTTGGACGAGGGC 57.554 42.857 0.00 0.00 0.00 5.19
3000 3103 6.569127 TTCATTACATTGGGGCTACTAAGA 57.431 37.500 0.00 0.00 0.00 2.10
3012 3115 5.163184 GGGGCTACTAAGATTTAGCTTTCCT 60.163 44.000 0.00 0.00 40.57 3.36
3030 3133 6.688073 TTTCCTCTTAAATCAGACTCCACT 57.312 37.500 0.00 0.00 0.00 4.00
3049 3152 9.331282 ACTCCACTGTCTAAATAAGATATTTGC 57.669 33.333 5.77 0.00 36.36 3.68
3077 3180 5.026790 ACTGAAGGGAATAGAGCACTAACT 58.973 41.667 0.00 0.00 32.04 2.24
3131 3234 3.437049 GCGATCTAAAGGAAAGCAGTTGT 59.563 43.478 0.00 0.00 33.03 3.32
3144 3247 6.396829 AAAGCAGTTGTTAGATTTGAAGCT 57.603 33.333 0.00 0.00 0.00 3.74
3146 3249 5.065914 AGCAGTTGTTAGATTTGAAGCTGA 58.934 37.500 0.00 0.00 0.00 4.26
3147 3250 5.532406 AGCAGTTGTTAGATTTGAAGCTGAA 59.468 36.000 0.00 0.00 0.00 3.02
3148 3251 6.208204 AGCAGTTGTTAGATTTGAAGCTGAAT 59.792 34.615 0.00 0.00 0.00 2.57
3149 3252 7.391554 AGCAGTTGTTAGATTTGAAGCTGAATA 59.608 33.333 0.00 0.00 0.00 1.75
3150 3253 7.483059 GCAGTTGTTAGATTTGAAGCTGAATAC 59.517 37.037 0.00 0.00 0.00 1.89
3151 3254 7.965107 CAGTTGTTAGATTTGAAGCTGAATACC 59.035 37.037 0.00 0.00 0.00 2.73
3152 3255 7.885399 AGTTGTTAGATTTGAAGCTGAATACCT 59.115 33.333 0.00 0.00 0.00 3.08
3154 3257 8.718102 TGTTAGATTTGAAGCTGAATACCTAC 57.282 34.615 0.00 0.00 0.00 3.18
3156 3259 9.384764 GTTAGATTTGAAGCTGAATACCTACTT 57.615 33.333 0.00 0.00 0.00 2.24
3157 3260 9.959721 TTAGATTTGAAGCTGAATACCTACTTT 57.040 29.630 0.00 0.00 0.00 2.66
3159 3262 9.606631 AGATTTGAAGCTGAATACCTACTTTAG 57.393 33.333 0.00 0.00 0.00 1.85
3160 3263 9.601217 GATTTGAAGCTGAATACCTACTTTAGA 57.399 33.333 0.00 0.00 0.00 2.10
3275 3383 3.815401 ACCAGCTCATGTTTGTGAAGTAC 59.185 43.478 0.00 0.00 0.00 2.73
3276 3384 4.067896 CCAGCTCATGTTTGTGAAGTACT 58.932 43.478 0.00 0.00 0.00 2.73
3277 3385 4.153117 CCAGCTCATGTTTGTGAAGTACTC 59.847 45.833 0.00 0.00 0.00 2.59
3278 3386 4.153117 CAGCTCATGTTTGTGAAGTACTCC 59.847 45.833 0.00 0.00 0.00 3.85
3279 3387 4.040952 AGCTCATGTTTGTGAAGTACTCCT 59.959 41.667 0.00 0.00 0.00 3.69
3280 3388 4.390297 GCTCATGTTTGTGAAGTACTCCTC 59.610 45.833 0.00 0.00 0.00 3.71
3281 3389 4.894784 TCATGTTTGTGAAGTACTCCTCC 58.105 43.478 0.00 0.00 0.00 4.30
3282 3390 3.380479 TGTTTGTGAAGTACTCCTCCG 57.620 47.619 0.00 0.00 0.00 4.63
3283 3391 2.696707 TGTTTGTGAAGTACTCCTCCGT 59.303 45.455 0.00 0.00 0.00 4.69
3284 3392 3.890756 TGTTTGTGAAGTACTCCTCCGTA 59.109 43.478 0.00 0.00 0.00 4.02
3285 3393 4.341806 TGTTTGTGAAGTACTCCTCCGTAA 59.658 41.667 0.00 0.00 0.00 3.18
3286 3394 5.163426 TGTTTGTGAAGTACTCCTCCGTAAA 60.163 40.000 0.00 0.00 0.00 2.01
3287 3395 4.510038 TGTGAAGTACTCCTCCGTAAAC 57.490 45.455 0.00 0.00 0.00 2.01
3288 3396 4.147321 TGTGAAGTACTCCTCCGTAAACT 58.853 43.478 0.00 0.00 0.00 2.66
3289 3397 5.316167 TGTGAAGTACTCCTCCGTAAACTA 58.684 41.667 0.00 0.00 0.00 2.24
3290 3398 5.769662 TGTGAAGTACTCCTCCGTAAACTAA 59.230 40.000 0.00 0.00 0.00 2.24
3291 3399 6.435277 TGTGAAGTACTCCTCCGTAAACTAAT 59.565 38.462 0.00 0.00 0.00 1.73
3292 3400 7.611467 TGTGAAGTACTCCTCCGTAAACTAATA 59.389 37.037 0.00 0.00 0.00 0.98
3293 3401 8.628280 GTGAAGTACTCCTCCGTAAACTAATAT 58.372 37.037 0.00 0.00 0.00 1.28
3294 3402 9.851686 TGAAGTACTCCTCCGTAAACTAATATA 57.148 33.333 0.00 0.00 0.00 0.86
3299 3407 7.884257 ACTCCTCCGTAAACTAATATAAGAGC 58.116 38.462 0.00 0.00 0.00 4.09
3300 3408 7.504911 ACTCCTCCGTAAACTAATATAAGAGCA 59.495 37.037 0.00 0.00 0.00 4.26
3301 3409 8.418597 TCCTCCGTAAACTAATATAAGAGCAT 57.581 34.615 0.00 0.00 0.00 3.79
3302 3410 8.867097 TCCTCCGTAAACTAATATAAGAGCATT 58.133 33.333 0.00 0.00 0.00 3.56
3303 3411 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
3305 3413 9.268268 TCCGTAAACTAATATAAGAGCATTTGG 57.732 33.333 0.00 0.00 0.00 3.28
3306 3414 9.268268 CCGTAAACTAATATAAGAGCATTTGGA 57.732 33.333 0.00 0.00 0.00 3.53
3311 3419 9.686683 AACTAATATAAGAGCATTTGGAACACT 57.313 29.630 0.00 0.00 39.29 3.55
3316 3424 9.686683 ATATAAGAGCATTTGGAACACTAAAGT 57.313 29.630 0.00 0.00 39.29 2.66
3318 3426 7.440523 AAGAGCATTTGGAACACTAAAGTAG 57.559 36.000 0.00 0.00 39.29 2.57
3319 3427 6.534634 AGAGCATTTGGAACACTAAAGTAGT 58.465 36.000 0.00 0.00 39.29 2.73
3333 3441 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3334 3442 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3335 3443 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3336 3444 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3337 3445 8.635877 AAAGTAGTGATCTAAACGCTCTTATG 57.364 34.615 0.00 0.00 0.00 1.90
3338 3446 7.336161 AGTAGTGATCTAAACGCTCTTATGT 57.664 36.000 0.00 0.00 0.00 2.29
3339 3447 7.773149 AGTAGTGATCTAAACGCTCTTATGTT 58.227 34.615 0.00 0.00 0.00 2.71
3340 3448 8.900781 AGTAGTGATCTAAACGCTCTTATGTTA 58.099 33.333 0.00 0.00 0.00 2.41
3341 3449 9.171701 GTAGTGATCTAAACGCTCTTATGTTAG 57.828 37.037 0.00 0.00 0.00 2.34
3342 3450 7.773149 AGTGATCTAAACGCTCTTATGTTAGT 58.227 34.615 0.00 0.00 0.00 2.24
3343 3451 8.251721 AGTGATCTAAACGCTCTTATGTTAGTT 58.748 33.333 0.00 0.00 0.00 2.24
3344 3452 8.870879 GTGATCTAAACGCTCTTATGTTAGTTT 58.129 33.333 0.00 0.00 36.11 2.66
3347 3455 9.865321 ATCTAAACGCTCTTATGTTAGTTTACA 57.135 29.630 0.00 0.00 34.29 2.41
3348 3456 9.695526 TCTAAACGCTCTTATGTTAGTTTACAA 57.304 29.630 0.00 0.00 34.29 2.41
3351 3459 7.360575 ACGCTCTTATGTTAGTTTACAAAGG 57.639 36.000 0.00 0.00 0.00 3.11
3352 3460 6.370718 ACGCTCTTATGTTAGTTTACAAAGGG 59.629 38.462 0.00 0.00 0.00 3.95
3353 3461 6.592607 CGCTCTTATGTTAGTTTACAAAGGGA 59.407 38.462 0.00 0.00 0.00 4.20
3354 3462 7.201530 CGCTCTTATGTTAGTTTACAAAGGGAG 60.202 40.741 0.00 0.00 0.00 4.30
3355 3463 7.606839 GCTCTTATGTTAGTTTACAAAGGGAGT 59.393 37.037 0.00 0.00 0.00 3.85
3407 3515 8.650714 CGTACTGTTTTACTTTATCAGGGTAAC 58.349 37.037 0.00 0.00 0.00 2.50
3645 3782 6.827586 TTTTACCAGTCAACTTGTTGAACT 57.172 33.333 16.46 12.99 32.04 3.01
3740 3878 2.346766 TCTGAAGCCTGCTTTCACAA 57.653 45.000 5.76 0.00 36.26 3.33
3783 3921 6.041865 TCCAAATGCTTTCTCCTTTTCATTCA 59.958 34.615 0.00 0.00 0.00 2.57
3859 3997 5.125900 TCCATTTCATCATGTTGTGGCTAAG 59.874 40.000 3.76 0.00 0.00 2.18
3898 4036 3.508840 GTGCTGGGGTATGCGCAC 61.509 66.667 14.90 0.00 44.73 5.34
3904 4042 2.824041 GGGTATGCGCACTGTGGG 60.824 66.667 14.90 19.28 0.00 4.61
3958 4096 2.019984 GCCATTCCTTGCCTCAGTAAG 58.980 52.381 0.00 0.00 35.63 2.34
4032 4170 5.260424 TCTGACTCTACAGATGCTCTTTCT 58.740 41.667 0.00 0.00 41.21 2.52
4035 4173 7.559533 TCTGACTCTACAGATGCTCTTTCTATT 59.440 37.037 0.00 0.00 41.21 1.73
4179 4317 7.803189 CACAAACGATTTGGCCATTACTATATC 59.197 37.037 6.09 0.72 44.81 1.63
4181 4319 8.349245 CAAACGATTTGGCCATTACTATATCAA 58.651 33.333 6.09 0.00 37.01 2.57
4225 4363 4.186077 TCTCTACTTAGGACAGGGATGG 57.814 50.000 0.00 0.00 0.00 3.51
4262 4400 4.499019 GCTTCTCTCCTTCTAGATTGACCG 60.499 50.000 0.00 0.00 0.00 4.79
4275 4413 1.658994 TTGACCGTGACACACCTTTC 58.341 50.000 6.37 0.00 0.00 2.62
4291 4430 6.017934 CACACCTTTCGGAATATATGAACTGG 60.018 42.308 0.00 0.00 0.00 4.00
4367 4507 8.995220 AGCTTATTTAAAACAGTGACGTATTCA 58.005 29.630 0.00 0.00 0.00 2.57
4418 4558 3.140325 AGATTTTCCGGTGCTGAGAAA 57.860 42.857 0.00 0.00 0.00 2.52
4433 4573 4.791974 CTGAGAAAGACAGGCACAAATTC 58.208 43.478 0.00 0.00 0.00 2.17
4435 4575 3.823304 GAGAAAGACAGGCACAAATTCCT 59.177 43.478 0.00 0.00 0.00 3.36
4437 4577 5.385198 AGAAAGACAGGCACAAATTCCTTA 58.615 37.500 0.00 0.00 0.00 2.69
4438 4578 5.474876 AGAAAGACAGGCACAAATTCCTTAG 59.525 40.000 0.00 0.00 0.00 2.18
4439 4579 4.640771 AGACAGGCACAAATTCCTTAGA 57.359 40.909 0.00 0.00 0.00 2.10
4440 4580 5.184892 AGACAGGCACAAATTCCTTAGAT 57.815 39.130 0.00 0.00 0.00 1.98
4441 4581 6.313519 AGACAGGCACAAATTCCTTAGATA 57.686 37.500 0.00 0.00 0.00 1.98
4442 4582 6.721318 AGACAGGCACAAATTCCTTAGATAA 58.279 36.000 0.00 0.00 0.00 1.75
4443 4583 7.349598 AGACAGGCACAAATTCCTTAGATAAT 58.650 34.615 0.00 0.00 0.00 1.28
4462 4602 6.604795 AGATAATTAAGCAGTGCATTTCTGGT 59.395 34.615 19.20 1.95 43.94 4.00
4575 4716 7.681939 TTGATACCTTGTAAACCTGAATCAC 57.318 36.000 0.00 0.00 0.00 3.06
4605 4748 6.278363 TCTCCCAGCGTATACTTACAAATTC 58.722 40.000 0.56 0.00 0.00 2.17
4650 4793 8.196103 CCTACTTTAGTTTACTTAGGTAGGCAG 58.804 40.741 18.23 3.09 0.00 4.85
4891 5069 9.616634 AAATATATGATGCTTGATACTTTTGCG 57.383 29.630 0.00 0.00 0.00 4.85
4915 5093 3.449018 TGCATCTGGACTTCTAGACCTTC 59.551 47.826 0.00 0.00 36.28 3.46
5033 5211 7.010460 TGCGTGAGAATGACAAGTTATTATCAG 59.990 37.037 13.16 9.67 37.43 2.90
5076 5254 1.212935 AGGTATGCCTTGTAAGCCCAG 59.787 52.381 0.00 0.00 44.18 4.45
5082 5260 0.255033 CCTTGTAAGCCCAGGGGTAC 59.745 60.000 11.75 10.17 37.65 3.34
5093 5271 2.367241 CCCAGGGGTACAAAAGTTTTGG 59.633 50.000 27.46 11.52 0.00 3.28
5106 5284 8.587952 ACAAAAGTTTTGGCATTGAATACTAC 57.412 30.769 27.46 0.00 0.00 2.73
5113 5291 9.594038 GTTTTGGCATTGAATACTACATATACG 57.406 33.333 0.00 0.00 0.00 3.06
5114 5292 9.549078 TTTTGGCATTGAATACTACATATACGA 57.451 29.630 0.00 0.00 0.00 3.43
5252 5541 1.065053 TGGCGTTTGTAGGCATATGGT 60.065 47.619 4.56 0.00 39.30 3.55
5322 5611 1.208259 GAAAACCAAACAGCGGCAAG 58.792 50.000 1.45 0.00 0.00 4.01
5333 5622 1.065401 CAGCGGCAAGAAAGAACAACA 59.935 47.619 1.45 0.00 0.00 3.33
5344 5633 6.833342 AGAAAGAACAACAATTTCACATGC 57.167 33.333 0.00 0.00 35.79 4.06
5349 5638 3.068560 ACAACAATTTCACATGCATGCC 58.931 40.909 26.53 0.00 0.00 4.40
5427 5716 8.919145 AGGACTATGAGTAGATAACCAAAAGAG 58.081 37.037 0.00 0.00 0.00 2.85
5503 5792 5.748152 TGTTCTTTGTTTATGCTGCAAACTC 59.252 36.000 6.36 0.00 36.92 3.01
5504 5793 5.772825 TCTTTGTTTATGCTGCAAACTCT 57.227 34.783 6.36 0.00 36.92 3.24
5507 5796 4.241590 TGTTTATGCTGCAAACTCTTGG 57.758 40.909 6.36 0.00 36.92 3.61
5509 5798 4.824537 TGTTTATGCTGCAAACTCTTGGTA 59.175 37.500 6.36 0.00 36.92 3.25
5510 5799 5.048782 TGTTTATGCTGCAAACTCTTGGTAG 60.049 40.000 6.36 0.00 36.92 3.18
5760 6049 6.176975 TGTTTTGCCTAGTCAAACATATCG 57.823 37.500 0.00 0.00 35.86 2.92
6011 6321 4.638304 AGTGGCGTTGTTACTTACTGAAT 58.362 39.130 0.00 0.00 0.00 2.57
6033 6343 9.970395 TGAATTATTTGCCATATGACTTGAATC 57.030 29.630 3.65 0.00 0.00 2.52
6044 6354 0.323178 ACTTGAATCTGCCAGGCTGG 60.323 55.000 29.44 29.44 41.55 4.85
6076 6386 8.853077 ATCTTCAGAAGATGTCAATTGTGTTA 57.147 30.769 22.75 0.00 46.16 2.41
6128 6438 0.179059 TGTTCTTCTGCACGGAAGCA 60.179 50.000 13.35 1.11 41.55 3.91
6220 6530 0.179137 CGACACTGAAGCGGCTGATA 60.179 55.000 1.81 0.00 0.00 2.15
6321 6631 6.603201 TCAAATCACCTCTGAAAAGTTCAAGT 59.397 34.615 0.00 0.00 39.58 3.16
6447 6757 2.654877 GTTGCATTGCCAGCTGCT 59.345 55.556 8.66 0.00 42.00 4.24
6546 6856 0.336737 AGATTCGTCTGGGGAGGTCT 59.663 55.000 0.00 0.00 0.00 3.85
6714 7024 1.066573 CACGGGAAGAGAGTGCATCTT 60.067 52.381 0.64 0.64 38.84 2.40
6917 7328 4.074970 AGGTATTTGGTTCTGAAGCTGTG 58.925 43.478 19.08 0.00 0.00 3.66
7140 7557 2.188912 CGGTGCGGATTTTTGGGAT 58.811 52.632 0.00 0.00 0.00 3.85
7153 7570 3.414759 TTTGGGATCTAGGTCTAGGCA 57.585 47.619 2.34 0.00 34.06 4.75
7167 7584 0.842905 TAGGCACACCCCTTTAGGCA 60.843 55.000 0.00 0.00 36.41 4.75
7188 7605 4.737055 GCAAACCGTCCCTAGTTATCTCTC 60.737 50.000 0.00 0.00 0.00 3.20
7189 7606 4.523168 AACCGTCCCTAGTTATCTCTCT 57.477 45.455 0.00 0.00 0.00 3.10
7190 7607 4.089408 ACCGTCCCTAGTTATCTCTCTC 57.911 50.000 0.00 0.00 0.00 3.20
7203 7620 2.226330 TCTCTCTCGCCTAATCTCTGC 58.774 52.381 0.00 0.00 0.00 4.26
7204 7621 1.269448 CTCTCTCGCCTAATCTCTGCC 59.731 57.143 0.00 0.00 0.00 4.85
7205 7622 1.133637 TCTCTCGCCTAATCTCTGCCT 60.134 52.381 0.00 0.00 0.00 4.75
7206 7623 1.269448 CTCTCGCCTAATCTCTGCCTC 59.731 57.143 0.00 0.00 0.00 4.70
7207 7624 1.035923 CTCGCCTAATCTCTGCCTCA 58.964 55.000 0.00 0.00 0.00 3.86
7377 11585 4.301072 TTTCTTTGAACGGGAGGATCAT 57.699 40.909 0.00 0.00 36.25 2.45
7612 11822 5.069251 CCTGAACTACTCCTACATTACAGGG 59.931 48.000 0.00 0.00 37.91 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.552355 ACCGCGATATCGTTAAATCATCA 58.448 39.130 24.99 0.00 42.22 3.07
48 49 1.866880 GCTTGGTACCGCGATATCGTT 60.867 52.381 24.99 12.95 42.22 3.85
59 60 1.601166 AAACGTTCTGGCTTGGTACC 58.399 50.000 4.43 4.43 0.00 3.34
69 70 6.575942 CCGTCCTACAAATTAAAAACGTTCTG 59.424 38.462 0.00 0.00 0.00 3.02
80 81 5.706833 GGTTTCTTTCCCGTCCTACAAATTA 59.293 40.000 0.00 0.00 0.00 1.40
129 130 6.175712 AGATTCGATTCTCTTGTGAAAAGC 57.824 37.500 4.00 0.00 0.00 3.51
134 135 7.068716 TCCAGAATAGATTCGATTCTCTTGTGA 59.931 37.037 22.87 12.78 40.83 3.58
149 150 3.873952 GTGCGCTTTCTTCCAGAATAGAT 59.126 43.478 9.73 0.00 33.67 1.98
157 158 0.672091 TATGCGTGCGCTTTCTTCCA 60.672 50.000 17.49 0.00 42.51 3.53
165 166 2.596452 GAGTGTATATATGCGTGCGCT 58.404 47.619 17.49 6.03 42.51 5.92
200 203 7.406104 AGTATCAGCTTAATCTTTTGAGGGTT 58.594 34.615 0.00 0.00 0.00 4.11
227 230 9.715121 AAAACGTCTTATATTTTGGTACAGAGA 57.285 29.630 0.00 0.00 42.39 3.10
395 415 5.405269 GTGCTCGCATACTTTTTGGATTTTT 59.595 36.000 0.00 0.00 0.00 1.94
396 416 4.923281 GTGCTCGCATACTTTTTGGATTTT 59.077 37.500 0.00 0.00 0.00 1.82
420 440 7.358765 CGAATTCAAGTCTTAGATTCGCTATGG 60.359 40.741 20.36 4.23 34.18 2.74
427 449 7.637907 GTGCATTCGAATTCAAGTCTTAGATTC 59.362 37.037 12.10 8.84 0.00 2.52
447 469 4.927557 TGGCAGAACCAGTGCATT 57.072 50.000 0.00 0.00 46.36 3.56
474 497 2.352960 GAGAAGCGAACTAAGCATTGGG 59.647 50.000 0.00 0.00 37.01 4.12
548 584 4.530875 CAGGCTTAATCTTGAATCCAGGT 58.469 43.478 0.00 0.00 0.00 4.00
550 586 3.887716 CCCAGGCTTAATCTTGAATCCAG 59.112 47.826 0.00 0.00 0.00 3.86
568 604 0.613777 GGTCACAGGTTAGACCCCAG 59.386 60.000 0.00 0.00 46.79 4.45
589 625 4.537135 TGTTGATGAAGTCTAGGACACC 57.463 45.455 0.52 0.00 34.60 4.16
616 652 3.068448 TGCGAGAACACCAACAACTACTA 59.932 43.478 0.00 0.00 0.00 1.82
617 653 2.159014 TGCGAGAACACCAACAACTACT 60.159 45.455 0.00 0.00 0.00 2.57
618 654 2.206750 TGCGAGAACACCAACAACTAC 58.793 47.619 0.00 0.00 0.00 2.73
619 655 2.605837 TGCGAGAACACCAACAACTA 57.394 45.000 0.00 0.00 0.00 2.24
620 656 1.670811 CTTGCGAGAACACCAACAACT 59.329 47.619 0.00 0.00 0.00 3.16
621 657 1.268539 CCTTGCGAGAACACCAACAAC 60.269 52.381 1.22 0.00 0.00 3.32
703 772 2.799371 GGGCCGTACGAGAGACAG 59.201 66.667 18.76 0.00 0.00 3.51
762 831 0.332972 AAATTGGAGGGAGGGTGAGC 59.667 55.000 0.00 0.00 0.00 4.26
949 1019 2.579201 CCGACAGCACCAGGTAGG 59.421 66.667 0.00 0.00 45.67 3.18
1275 1359 2.388232 CGTTAACGGGAGCACTGGC 61.388 63.158 20.24 0.00 36.51 4.85
1284 1368 0.458025 GTGAGGAGAGCGTTAACGGG 60.458 60.000 27.82 3.09 40.23 5.28
1299 1383 1.073216 AATTCTCGTCGCAGCGTGAG 61.073 55.000 24.63 24.63 36.10 3.51
1352 1438 2.094803 TCACCGCAGCACCAAATAAATG 60.095 45.455 0.00 0.00 0.00 2.32
1368 1459 4.884257 CCCCCGTACGCATCACCG 62.884 72.222 10.49 0.00 0.00 4.94
1464 1555 8.402798 TGTCATCTTTAAACATTCCAGCTTTA 57.597 30.769 0.00 0.00 0.00 1.85
1466 1557 6.899393 TGTCATCTTTAAACATTCCAGCTT 57.101 33.333 0.00 0.00 0.00 3.74
1468 1559 8.677300 TCTAATGTCATCTTTAAACATTCCAGC 58.323 33.333 5.87 0.00 41.42 4.85
1470 1561 9.177608 CCTCTAATGTCATCTTTAAACATTCCA 57.822 33.333 5.87 0.00 41.42 3.53
1471 1562 8.131731 GCCTCTAATGTCATCTTTAAACATTCC 58.868 37.037 5.87 0.00 41.42 3.01
1472 1563 8.897752 AGCCTCTAATGTCATCTTTAAACATTC 58.102 33.333 5.87 0.00 41.42 2.67
1473 1564 8.814038 AGCCTCTAATGTCATCTTTAAACATT 57.186 30.769 7.43 7.43 43.83 2.71
1474 1565 8.814038 AAGCCTCTAATGTCATCTTTAAACAT 57.186 30.769 0.00 0.00 35.20 2.71
1475 1566 8.514594 CAAAGCCTCTAATGTCATCTTTAAACA 58.485 33.333 0.00 0.00 0.00 2.83
1476 1567 8.730680 TCAAAGCCTCTAATGTCATCTTTAAAC 58.269 33.333 0.00 0.00 0.00 2.01
1477 1568 8.862325 TCAAAGCCTCTAATGTCATCTTTAAA 57.138 30.769 0.00 0.00 0.00 1.52
1478 1569 8.862325 TTCAAAGCCTCTAATGTCATCTTTAA 57.138 30.769 0.00 0.00 0.00 1.52
1479 1570 8.321353 TCTTCAAAGCCTCTAATGTCATCTTTA 58.679 33.333 0.00 0.00 0.00 1.85
1480 1571 7.170965 TCTTCAAAGCCTCTAATGTCATCTTT 58.829 34.615 0.00 0.00 0.00 2.52
1481 1572 6.715280 TCTTCAAAGCCTCTAATGTCATCTT 58.285 36.000 0.00 0.00 0.00 2.40
1482 1573 6.305272 TCTTCAAAGCCTCTAATGTCATCT 57.695 37.500 0.00 0.00 0.00 2.90
1483 1574 5.007528 GCTCTTCAAAGCCTCTAATGTCATC 59.992 44.000 0.00 0.00 36.22 2.92
1484 1575 4.880696 GCTCTTCAAAGCCTCTAATGTCAT 59.119 41.667 0.00 0.00 36.22 3.06
1485 1576 4.019860 AGCTCTTCAAAGCCTCTAATGTCA 60.020 41.667 0.00 0.00 43.56 3.58
1486 1577 4.512484 AGCTCTTCAAAGCCTCTAATGTC 58.488 43.478 0.00 0.00 43.56 3.06
1487 1578 4.566426 AGCTCTTCAAAGCCTCTAATGT 57.434 40.909 0.00 0.00 43.56 2.71
1488 1579 5.055812 CCTAGCTCTTCAAAGCCTCTAATG 58.944 45.833 0.00 0.00 43.56 1.90
1489 1580 4.444164 GCCTAGCTCTTCAAAGCCTCTAAT 60.444 45.833 0.00 0.00 43.56 1.73
1490 1581 3.118592 GCCTAGCTCTTCAAAGCCTCTAA 60.119 47.826 0.00 0.00 43.56 2.10
1491 1582 2.432510 GCCTAGCTCTTCAAAGCCTCTA 59.567 50.000 0.00 0.00 43.56 2.43
1492 1583 1.209261 GCCTAGCTCTTCAAAGCCTCT 59.791 52.381 0.00 0.00 43.56 3.69
1493 1584 1.065854 TGCCTAGCTCTTCAAAGCCTC 60.066 52.381 0.00 0.00 43.56 4.70
1494 1585 0.987294 TGCCTAGCTCTTCAAAGCCT 59.013 50.000 0.00 0.00 43.56 4.58
1495 1586 1.339535 ACTGCCTAGCTCTTCAAAGCC 60.340 52.381 0.00 0.00 43.56 4.35
1496 1587 1.736681 CACTGCCTAGCTCTTCAAAGC 59.263 52.381 0.00 0.00 42.82 3.51
1497 1588 3.260740 CTCACTGCCTAGCTCTTCAAAG 58.739 50.000 0.00 0.00 0.00 2.77
1498 1589 2.027745 CCTCACTGCCTAGCTCTTCAAA 60.028 50.000 0.00 0.00 0.00 2.69
1499 1590 1.552337 CCTCACTGCCTAGCTCTTCAA 59.448 52.381 0.00 0.00 0.00 2.69
1500 1591 1.189752 CCTCACTGCCTAGCTCTTCA 58.810 55.000 0.00 0.00 0.00 3.02
1501 1592 0.463620 CCCTCACTGCCTAGCTCTTC 59.536 60.000 0.00 0.00 0.00 2.87
1502 1593 0.980231 CCCCTCACTGCCTAGCTCTT 60.980 60.000 0.00 0.00 0.00 2.85
1503 1594 1.382420 CCCCTCACTGCCTAGCTCT 60.382 63.158 0.00 0.00 0.00 4.09
1504 1595 2.439104 CCCCCTCACTGCCTAGCTC 61.439 68.421 0.00 0.00 0.00 4.09
1505 1596 2.366167 CCCCCTCACTGCCTAGCT 60.366 66.667 0.00 0.00 0.00 3.32
1506 1597 4.182433 GCCCCCTCACTGCCTAGC 62.182 72.222 0.00 0.00 0.00 3.42
1507 1598 2.688666 TGCCCCCTCACTGCCTAG 60.689 66.667 0.00 0.00 0.00 3.02
1508 1599 2.688666 CTGCCCCCTCACTGCCTA 60.689 66.667 0.00 0.00 0.00 3.93
1511 1602 3.397613 CTAGCTGCCCCCTCACTGC 62.398 68.421 0.00 0.00 0.00 4.40
1512 1603 1.992277 ACTAGCTGCCCCCTCACTG 60.992 63.158 0.00 0.00 0.00 3.66
1513 1604 1.992277 CACTAGCTGCCCCCTCACT 60.992 63.158 0.00 0.00 0.00 3.41
1514 1605 1.965754 CTCACTAGCTGCCCCCTCAC 61.966 65.000 0.00 0.00 0.00 3.51
1515 1606 1.687146 CTCACTAGCTGCCCCCTCA 60.687 63.158 0.00 0.00 0.00 3.86
1516 1607 0.397254 TACTCACTAGCTGCCCCCTC 60.397 60.000 0.00 0.00 0.00 4.30
1517 1608 0.397816 CTACTCACTAGCTGCCCCCT 60.398 60.000 0.00 0.00 0.00 4.79
1518 1609 0.688087 ACTACTCACTAGCTGCCCCC 60.688 60.000 0.00 0.00 0.00 5.40
1519 1610 1.196012 AACTACTCACTAGCTGCCCC 58.804 55.000 0.00 0.00 0.00 5.80
1520 1611 2.028020 ACAAACTACTCACTAGCTGCCC 60.028 50.000 0.00 0.00 0.00 5.36
1521 1612 3.320673 ACAAACTACTCACTAGCTGCC 57.679 47.619 0.00 0.00 0.00 4.85
1522 1613 7.033791 TGTATTACAAACTACTCACTAGCTGC 58.966 38.462 0.00 0.00 0.00 5.25
1523 1614 8.981724 TTGTATTACAAACTACTCACTAGCTG 57.018 34.615 6.79 0.00 34.76 4.24
1524 1615 8.804204 ACTTGTATTACAAACTACTCACTAGCT 58.196 33.333 10.32 0.00 37.69 3.32
1525 1616 8.983307 ACTTGTATTACAAACTACTCACTAGC 57.017 34.615 10.32 0.00 37.69 3.42
1526 1617 9.275231 CGACTTGTATTACAAACTACTCACTAG 57.725 37.037 10.32 0.00 37.69 2.57
1527 1618 8.239314 CCGACTTGTATTACAAACTACTCACTA 58.761 37.037 10.32 0.00 37.69 2.74
1528 1619 7.088905 CCGACTTGTATTACAAACTACTCACT 58.911 38.462 10.32 0.00 37.69 3.41
1529 1620 6.865205 ACCGACTTGTATTACAAACTACTCAC 59.135 38.462 10.32 0.00 37.69 3.51
1530 1621 6.864685 CACCGACTTGTATTACAAACTACTCA 59.135 38.462 10.32 0.00 37.69 3.41
1531 1622 6.183360 GCACCGACTTGTATTACAAACTACTC 60.183 42.308 10.32 1.03 37.69 2.59
1532 1623 5.636543 GCACCGACTTGTATTACAAACTACT 59.363 40.000 10.32 0.00 37.69 2.57
1533 1624 5.636543 AGCACCGACTTGTATTACAAACTAC 59.363 40.000 10.32 2.55 37.69 2.73
1534 1625 5.786311 AGCACCGACTTGTATTACAAACTA 58.214 37.500 10.32 0.00 37.69 2.24
1535 1626 4.638304 AGCACCGACTTGTATTACAAACT 58.362 39.130 10.32 0.00 37.69 2.66
1536 1627 5.144359 CAAGCACCGACTTGTATTACAAAC 58.856 41.667 10.32 6.93 41.74 2.93
1537 1628 4.214545 CCAAGCACCGACTTGTATTACAAA 59.785 41.667 10.32 0.00 44.55 2.83
1538 1629 3.749088 CCAAGCACCGACTTGTATTACAA 59.251 43.478 8.86 8.86 44.55 2.41
1539 1630 3.244284 ACCAAGCACCGACTTGTATTACA 60.244 43.478 10.54 0.00 44.55 2.41
1540 1631 3.124636 CACCAAGCACCGACTTGTATTAC 59.875 47.826 10.54 0.00 44.55 1.89
1541 1632 3.331150 CACCAAGCACCGACTTGTATTA 58.669 45.455 10.54 0.00 44.55 0.98
1542 1633 2.151202 CACCAAGCACCGACTTGTATT 58.849 47.619 10.54 0.00 44.55 1.89
1543 1634 1.610624 CCACCAAGCACCGACTTGTAT 60.611 52.381 10.54 0.00 44.55 2.29
1544 1635 0.250124 CCACCAAGCACCGACTTGTA 60.250 55.000 10.54 0.00 44.55 2.41
1545 1636 1.525995 CCACCAAGCACCGACTTGT 60.526 57.895 10.54 0.00 44.55 3.16
1546 1637 1.227823 TCCACCAAGCACCGACTTG 60.228 57.895 5.99 5.99 45.42 3.16
1547 1638 1.227853 GTCCACCAAGCACCGACTT 60.228 57.895 0.00 0.00 0.00 3.01
1548 1639 2.100879 GAGTCCACCAAGCACCGACT 62.101 60.000 0.00 0.00 0.00 4.18
1549 1640 1.668151 GAGTCCACCAAGCACCGAC 60.668 63.158 0.00 0.00 0.00 4.79
1550 1641 2.741092 GAGTCCACCAAGCACCGA 59.259 61.111 0.00 0.00 0.00 4.69
1551 1642 2.738521 CGAGTCCACCAAGCACCG 60.739 66.667 0.00 0.00 0.00 4.94
1552 1643 2.358737 CCGAGTCCACCAAGCACC 60.359 66.667 0.00 0.00 0.00 5.01
1553 1644 2.358737 CCCGAGTCCACCAAGCAC 60.359 66.667 0.00 0.00 0.00 4.40
1554 1645 2.525629 TCCCGAGTCCACCAAGCA 60.526 61.111 0.00 0.00 0.00 3.91
1555 1646 2.047179 GTCCCGAGTCCACCAAGC 60.047 66.667 0.00 0.00 0.00 4.01
1556 1647 1.481056 AAGGTCCCGAGTCCACCAAG 61.481 60.000 3.93 0.00 31.99 3.61
1557 1648 1.460689 AAGGTCCCGAGTCCACCAA 60.461 57.895 3.93 0.00 31.99 3.67
1558 1649 2.203182 AAGGTCCCGAGTCCACCA 59.797 61.111 3.93 0.00 31.99 4.17
1559 1650 2.663196 CAAGGTCCCGAGTCCACC 59.337 66.667 0.00 0.00 0.00 4.61
1560 1651 0.901580 TACCAAGGTCCCGAGTCCAC 60.902 60.000 0.00 0.00 0.00 4.02
1561 1652 0.178926 TTACCAAGGTCCCGAGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
1562 1653 1.201424 ATTACCAAGGTCCCGAGTCC 58.799 55.000 0.00 0.00 0.00 3.85
1563 1654 3.181468 CCTAATTACCAAGGTCCCGAGTC 60.181 52.174 0.00 0.00 0.00 3.36
1564 1655 2.770232 CCTAATTACCAAGGTCCCGAGT 59.230 50.000 0.00 0.00 0.00 4.18
1565 1656 3.036091 TCCTAATTACCAAGGTCCCGAG 58.964 50.000 0.00 0.00 34.30 4.63
1566 1657 3.119009 TCCTAATTACCAAGGTCCCGA 57.881 47.619 0.00 0.00 34.30 5.14
1567 1658 4.432980 AATCCTAATTACCAAGGTCCCG 57.567 45.455 0.00 0.00 34.30 5.14
1568 1659 5.362717 CCAAAATCCTAATTACCAAGGTCCC 59.637 44.000 0.00 0.00 34.30 4.46
1569 1660 6.465439 CCAAAATCCTAATTACCAAGGTCC 57.535 41.667 0.00 0.00 34.30 4.46
2020 2111 1.670791 TCGTTTCGTTTCCTTTGCCT 58.329 45.000 0.00 0.00 0.00 4.75
2021 2112 2.478547 TTCGTTTCGTTTCCTTTGCC 57.521 45.000 0.00 0.00 0.00 4.52
2074 2169 6.663944 ACGGAATGAGAAATAACTTGCTAC 57.336 37.500 0.00 0.00 0.00 3.58
2112 2208 3.922240 GGAACTAACGACGCTGTAAATCA 59.078 43.478 0.00 0.00 0.00 2.57
2148 2244 1.555477 ATTTTGGGACGGCGGGAGTA 61.555 55.000 13.24 0.00 0.00 2.59
2149 2245 1.555477 TATTTTGGGACGGCGGGAGT 61.555 55.000 13.24 0.00 0.00 3.85
2150 2246 0.393267 TTATTTTGGGACGGCGGGAG 60.393 55.000 13.24 0.00 0.00 4.30
2151 2247 0.393267 CTTATTTTGGGACGGCGGGA 60.393 55.000 13.24 0.00 0.00 5.14
2152 2248 0.678684 ACTTATTTTGGGACGGCGGG 60.679 55.000 13.24 0.00 0.00 6.13
2153 2249 0.450184 CACTTATTTTGGGACGGCGG 59.550 55.000 13.24 0.00 0.00 6.13
2154 2250 1.129811 GACACTTATTTTGGGACGGCG 59.870 52.381 4.80 4.80 0.00 6.46
2155 2251 2.418976 GAGACACTTATTTTGGGACGGC 59.581 50.000 0.00 0.00 0.00 5.68
2156 2252 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
2157 2253 4.083484 GGTTGAGACACTTATTTTGGGACG 60.083 45.833 0.00 0.00 0.00 4.79
2158 2254 5.070685 AGGTTGAGACACTTATTTTGGGAC 58.929 41.667 0.00 0.00 0.00 4.46
2159 2255 5.319043 AGGTTGAGACACTTATTTTGGGA 57.681 39.130 0.00 0.00 0.00 4.37
2160 2256 6.715264 ACTAAGGTTGAGACACTTATTTTGGG 59.285 38.462 0.00 0.00 0.00 4.12
2161 2257 7.745620 ACTAAGGTTGAGACACTTATTTTGG 57.254 36.000 0.00 0.00 0.00 3.28
2162 2258 9.268268 TGTACTAAGGTTGAGACACTTATTTTG 57.732 33.333 0.00 0.00 0.00 2.44
2163 2259 9.841295 TTGTACTAAGGTTGAGACACTTATTTT 57.159 29.630 0.00 0.00 0.00 1.82
2164 2260 9.269453 GTTGTACTAAGGTTGAGACACTTATTT 57.731 33.333 0.00 0.00 0.00 1.40
2165 2261 8.648693 AGTTGTACTAAGGTTGAGACACTTATT 58.351 33.333 0.00 0.00 0.00 1.40
2166 2262 8.191534 AGTTGTACTAAGGTTGAGACACTTAT 57.808 34.615 0.00 0.00 0.00 1.73
2167 2263 7.592885 AGTTGTACTAAGGTTGAGACACTTA 57.407 36.000 0.00 0.00 0.00 2.24
2168 2264 6.481434 AGTTGTACTAAGGTTGAGACACTT 57.519 37.500 0.00 0.00 0.00 3.16
2169 2265 6.481434 AAGTTGTACTAAGGTTGAGACACT 57.519 37.500 0.00 0.00 0.00 3.55
2170 2266 6.537660 ACAAAGTTGTACTAAGGTTGAGACAC 59.462 38.462 0.00 0.00 40.16 3.67
2171 2267 6.646267 ACAAAGTTGTACTAAGGTTGAGACA 58.354 36.000 0.00 0.00 40.16 3.41
2196 2292 8.985805 CCGTCTCAACTTTGTATTAACTTTAGT 58.014 33.333 0.00 0.00 0.00 2.24
2197 2293 9.199982 TCCGTCTCAACTTTGTATTAACTTTAG 57.800 33.333 0.00 0.00 0.00 1.85
2198 2294 9.199982 CTCCGTCTCAACTTTGTATTAACTTTA 57.800 33.333 0.00 0.00 0.00 1.85
2199 2295 7.172703 CCTCCGTCTCAACTTTGTATTAACTTT 59.827 37.037 0.00 0.00 0.00 2.66
2200 2296 6.649557 CCTCCGTCTCAACTTTGTATTAACTT 59.350 38.462 0.00 0.00 0.00 2.66
2201 2297 6.164176 CCTCCGTCTCAACTTTGTATTAACT 58.836 40.000 0.00 0.00 0.00 2.24
2202 2298 5.350640 CCCTCCGTCTCAACTTTGTATTAAC 59.649 44.000 0.00 0.00 0.00 2.01
2203 2299 5.246656 TCCCTCCGTCTCAACTTTGTATTAA 59.753 40.000 0.00 0.00 0.00 1.40
2204 2300 4.773674 TCCCTCCGTCTCAACTTTGTATTA 59.226 41.667 0.00 0.00 0.00 0.98
2205 2301 3.581332 TCCCTCCGTCTCAACTTTGTATT 59.419 43.478 0.00 0.00 0.00 1.89
2206 2302 3.170717 TCCCTCCGTCTCAACTTTGTAT 58.829 45.455 0.00 0.00 0.00 2.29
2207 2303 2.600790 TCCCTCCGTCTCAACTTTGTA 58.399 47.619 0.00 0.00 0.00 2.41
2208 2304 1.420430 TCCCTCCGTCTCAACTTTGT 58.580 50.000 0.00 0.00 0.00 2.83
2209 2305 2.543777 TTCCCTCCGTCTCAACTTTG 57.456 50.000 0.00 0.00 0.00 2.77
2210 2306 5.437191 AATATTCCCTCCGTCTCAACTTT 57.563 39.130 0.00 0.00 0.00 2.66
2211 2307 5.437191 AAATATTCCCTCCGTCTCAACTT 57.563 39.130 0.00 0.00 0.00 2.66
2212 2308 6.749036 ATAAATATTCCCTCCGTCTCAACT 57.251 37.500 0.00 0.00 0.00 3.16
2213 2309 9.804758 CTATATAAATATTCCCTCCGTCTCAAC 57.195 37.037 0.00 0.00 0.00 3.18
2214 2310 8.475639 GCTATATAAATATTCCCTCCGTCTCAA 58.524 37.037 0.00 0.00 0.00 3.02
2215 2311 7.839705 AGCTATATAAATATTCCCTCCGTCTCA 59.160 37.037 0.00 0.00 0.00 3.27
2216 2312 8.240267 AGCTATATAAATATTCCCTCCGTCTC 57.760 38.462 0.00 0.00 0.00 3.36
2217 2313 8.611051 AAGCTATATAAATATTCCCTCCGTCT 57.389 34.615 0.00 0.00 0.00 4.18
2218 2314 9.747293 GTAAGCTATATAAATATTCCCTCCGTC 57.253 37.037 0.00 0.00 0.00 4.79
2219 2315 8.702819 GGTAAGCTATATAAATATTCCCTCCGT 58.297 37.037 0.00 0.00 0.00 4.69
2220 2316 8.701895 TGGTAAGCTATATAAATATTCCCTCCG 58.298 37.037 0.00 0.00 0.00 4.63
2221 2317 9.833917 GTGGTAAGCTATATAAATATTCCCTCC 57.166 37.037 0.00 0.00 0.00 4.30
2224 2320 9.095065 CGTGTGGTAAGCTATATAAATATTCCC 57.905 37.037 0.00 0.00 0.00 3.97
2225 2321 9.649167 ACGTGTGGTAAGCTATATAAATATTCC 57.351 33.333 0.00 0.00 0.00 3.01
2227 2323 8.932791 GCACGTGTGGTAAGCTATATAAATATT 58.067 33.333 18.38 0.00 0.00 1.28
2228 2324 7.548075 GGCACGTGTGGTAAGCTATATAAATAT 59.452 37.037 18.38 0.00 0.00 1.28
2471 2569 6.458210 CAGCATCAACCAACTAAATTTTCCT 58.542 36.000 0.00 0.00 0.00 3.36
2536 2634 7.608761 ACAAAGAAATAGGCATTGCATTTGATT 59.391 29.630 11.39 0.00 32.00 2.57
2581 2679 8.814038 AATTTCTTTCCTAGATGCTACACAAT 57.186 30.769 0.00 0.00 31.54 2.71
2587 2685 7.394359 AGCAACAAATTTCTTTCCTAGATGCTA 59.606 33.333 4.53 0.00 37.44 3.49
2603 2701 5.067153 TGCACACACTTACTAGCAACAAATT 59.933 36.000 0.00 0.00 0.00 1.82
2634 2732 4.458397 CTTAGATGCTTCACACCATCCAT 58.542 43.478 2.07 0.00 38.85 3.41
2636 2734 3.118261 TCCTTAGATGCTTCACACCATCC 60.118 47.826 2.07 0.00 38.85 3.51
2638 2736 4.521146 CTTCCTTAGATGCTTCACACCAT 58.479 43.478 2.07 0.00 0.00 3.55
2655 2753 1.912043 CTCCATGGTCTGTTCCTTCCT 59.088 52.381 12.58 0.00 0.00 3.36
2665 2763 1.971357 ACGTCAGTTTCTCCATGGTCT 59.029 47.619 12.58 1.31 0.00 3.85
2680 2778 0.531974 GAACCAACTGGCTCACGTCA 60.532 55.000 0.00 0.00 39.32 4.35
2721 2819 8.504005 CACCTTCAACGAATTAGACTGTTTATT 58.496 33.333 0.00 0.00 0.00 1.40
2722 2820 7.876068 TCACCTTCAACGAATTAGACTGTTTAT 59.124 33.333 0.00 0.00 0.00 1.40
2723 2821 7.211573 TCACCTTCAACGAATTAGACTGTTTA 58.788 34.615 0.00 0.00 0.00 2.01
2828 2926 5.051153 GCAATTCCTTTAAACCAACGGAAA 58.949 37.500 9.24 0.00 44.96 3.13
2829 2927 4.342665 AGCAATTCCTTTAAACCAACGGAA 59.657 37.500 7.97 7.97 45.63 4.30
2830 2928 3.892588 AGCAATTCCTTTAAACCAACGGA 59.107 39.130 0.00 0.00 32.91 4.69
2832 2930 6.921307 ACTTTAGCAATTCCTTTAAACCAACG 59.079 34.615 0.00 0.00 0.00 4.10
2833 2931 9.752961 TTACTTTAGCAATTCCTTTAAACCAAC 57.247 29.630 0.00 0.00 0.00 3.77
2861 2959 4.361451 ACAAAGTGAAGCTGAACAACTG 57.639 40.909 0.00 0.00 0.00 3.16
2882 2981 3.609853 AGCACTGCCAAATATCGAGAAA 58.390 40.909 0.00 0.00 0.00 2.52
2883 2982 3.266510 AGCACTGCCAAATATCGAGAA 57.733 42.857 0.00 0.00 0.00 2.87
2888 2987 4.397417 ACTGAAGAAGCACTGCCAAATATC 59.603 41.667 0.00 0.00 0.00 1.63
2897 2996 6.566197 AATAGGAAAACTGAAGAAGCACTG 57.434 37.500 0.00 0.00 0.00 3.66
2909 3008 5.617252 TCAAGTGAACCGAATAGGAAAACT 58.383 37.500 0.00 0.00 45.00 2.66
2910 3009 5.934935 TCAAGTGAACCGAATAGGAAAAC 57.065 39.130 0.00 0.00 45.00 2.43
2950 3053 2.558359 AGAATTGCCCTCGTCCAAAAAG 59.442 45.455 0.00 0.00 0.00 2.27
2951 3054 2.593026 AGAATTGCCCTCGTCCAAAAA 58.407 42.857 0.00 0.00 0.00 1.94
2963 3066 8.872845 CCAATGTAATGAAAACTAAGAATTGCC 58.127 33.333 0.00 0.00 0.00 4.52
2965 3068 9.369904 CCCCAATGTAATGAAAACTAAGAATTG 57.630 33.333 0.00 0.00 0.00 2.32
3000 3103 9.389755 GAGTCTGATTTAAGAGGAAAGCTAAAT 57.610 33.333 0.00 0.00 0.00 1.40
3049 3152 7.296628 AGTGCTCTATTCCCTTCAGTATAAG 57.703 40.000 0.00 0.00 0.00 1.73
3058 3161 5.273208 TCAGAGTTAGTGCTCTATTCCCTT 58.727 41.667 0.00 0.00 43.37 3.95
3060 3163 5.799827 ATCAGAGTTAGTGCTCTATTCCC 57.200 43.478 0.00 0.00 43.37 3.97
3099 3202 3.898123 TCCTTTAGATCGCTGGAGCTTAT 59.102 43.478 0.00 0.00 40.04 1.73
3120 3223 6.361748 CAGCTTCAAATCTAACAACTGCTTTC 59.638 38.462 0.00 0.00 0.00 2.62
3131 3234 9.959721 AAAGTAGGTATTCAGCTTCAAATCTAA 57.040 29.630 0.00 0.00 33.61 2.10
3149 3252 9.101325 TGCCTAGCATATTTATCTAAAGTAGGT 57.899 33.333 0.00 0.00 31.71 3.08
3150 3253 9.372369 GTGCCTAGCATATTTATCTAAAGTAGG 57.628 37.037 0.00 0.00 41.91 3.18
3157 3260 9.436957 GCTAAAAGTGCCTAGCATATTTATCTA 57.563 33.333 8.98 0.00 41.91 1.98
3159 3262 8.233190 CAGCTAAAAGTGCCTAGCATATTTATC 58.767 37.037 4.10 6.54 42.51 1.75
3160 3263 7.308830 GCAGCTAAAAGTGCCTAGCATATTTAT 60.309 37.037 4.10 2.66 42.51 1.40
3165 3268 3.118261 AGCAGCTAAAAGTGCCTAGCATA 60.118 43.478 0.00 0.00 42.51 3.14
3167 3270 1.003580 AGCAGCTAAAAGTGCCTAGCA 59.996 47.619 0.00 0.00 42.51 3.49
3275 3383 7.883217 TGCTCTTATATTAGTTTACGGAGGAG 58.117 38.462 0.00 0.00 0.00 3.69
3276 3384 7.828508 TGCTCTTATATTAGTTTACGGAGGA 57.171 36.000 0.00 0.00 0.00 3.71
3277 3385 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
3279 3387 9.268268 CCAAATGCTCTTATATTAGTTTACGGA 57.732 33.333 0.00 0.00 0.00 4.69
3280 3388 9.268268 TCCAAATGCTCTTATATTAGTTTACGG 57.732 33.333 0.00 0.00 0.00 4.02
3285 3393 9.686683 AGTGTTCCAAATGCTCTTATATTAGTT 57.313 29.630 0.00 0.00 0.00 2.24
3290 3398 9.686683 ACTTTAGTGTTCCAAATGCTCTTATAT 57.313 29.630 0.00 0.00 0.00 0.86
3292 3400 9.167311 CTACTTTAGTGTTCCAAATGCTCTTAT 57.833 33.333 0.00 0.00 0.00 1.73
3293 3401 8.154856 ACTACTTTAGTGTTCCAAATGCTCTTA 58.845 33.333 0.00 0.00 37.69 2.10
3294 3402 6.998673 ACTACTTTAGTGTTCCAAATGCTCTT 59.001 34.615 0.00 0.00 37.69 2.85
3295 3403 6.534634 ACTACTTTAGTGTTCCAAATGCTCT 58.465 36.000 0.00 0.00 37.69 4.09
3296 3404 6.803154 ACTACTTTAGTGTTCCAAATGCTC 57.197 37.500 0.00 0.00 37.69 4.26
3309 3417 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3310 3418 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3311 3419 9.731819 CATAAGAGCGTTTAGATCACTACTTTA 57.268 33.333 0.00 0.00 37.82 1.85
3312 3420 8.251721 ACATAAGAGCGTTTAGATCACTACTTT 58.748 33.333 0.00 0.00 37.82 2.66
3313 3421 7.773149 ACATAAGAGCGTTTAGATCACTACTT 58.227 34.615 0.00 0.00 37.82 2.24
3314 3422 7.336161 ACATAAGAGCGTTTAGATCACTACT 57.664 36.000 0.00 0.00 37.82 2.57
3315 3423 7.988904 AACATAAGAGCGTTTAGATCACTAC 57.011 36.000 0.00 0.00 37.82 2.73
3316 3424 8.900781 ACTAACATAAGAGCGTTTAGATCACTA 58.099 33.333 0.00 0.00 37.82 2.74
3317 3425 7.773149 ACTAACATAAGAGCGTTTAGATCACT 58.227 34.615 0.00 0.00 37.82 3.41
3318 3426 7.988904 ACTAACATAAGAGCGTTTAGATCAC 57.011 36.000 0.00 0.00 37.82 3.06
3319 3427 8.997621 AAACTAACATAAGAGCGTTTAGATCA 57.002 30.769 0.00 0.00 37.82 2.92
3321 3429 9.865321 TGTAAACTAACATAAGAGCGTTTAGAT 57.135 29.630 0.00 0.00 30.36 1.98
3322 3430 9.695526 TTGTAAACTAACATAAGAGCGTTTAGA 57.304 29.630 0.00 0.00 30.36 2.10
3325 3433 8.287503 CCTTTGTAAACTAACATAAGAGCGTTT 58.712 33.333 0.00 0.00 0.00 3.60
3326 3434 7.094933 CCCTTTGTAAACTAACATAAGAGCGTT 60.095 37.037 0.00 0.00 0.00 4.84
3327 3435 6.370718 CCCTTTGTAAACTAACATAAGAGCGT 59.629 38.462 0.00 0.00 0.00 5.07
3328 3436 6.592607 TCCCTTTGTAAACTAACATAAGAGCG 59.407 38.462 0.00 0.00 0.00 5.03
3329 3437 7.606839 ACTCCCTTTGTAAACTAACATAAGAGC 59.393 37.037 0.00 0.00 0.00 4.09
3332 3440 9.939802 ACTACTCCCTTTGTAAACTAACATAAG 57.060 33.333 0.00 0.00 0.00 1.73
3335 3443 8.873144 TGTACTACTCCCTTTGTAAACTAACAT 58.127 33.333 0.00 0.00 0.00 2.71
3336 3444 8.248904 TGTACTACTCCCTTTGTAAACTAACA 57.751 34.615 0.00 0.00 0.00 2.41
3340 3448 9.043548 ACATATGTACTACTCCCTTTGTAAACT 57.956 33.333 6.56 0.00 0.00 2.66
3341 3449 9.662947 AACATATGTACTACTCCCTTTGTAAAC 57.337 33.333 9.21 0.00 0.00 2.01
3345 3453 8.818860 TGTTAACATATGTACTACTCCCTTTGT 58.181 33.333 9.21 0.00 0.00 2.83
3346 3454 9.832445 ATGTTAACATATGTACTACTCCCTTTG 57.168 33.333 19.51 0.00 34.26 2.77
3348 3456 8.648693 GGATGTTAACATATGTACTACTCCCTT 58.351 37.037 20.83 0.00 36.57 3.95
3349 3457 7.787904 TGGATGTTAACATATGTACTACTCCCT 59.212 37.037 20.83 0.00 36.57 4.20
3350 3458 7.959175 TGGATGTTAACATATGTACTACTCCC 58.041 38.462 20.83 13.01 36.57 4.30
3740 3878 3.632333 TGGAGTCTCTATCACGGACAAT 58.368 45.455 0.00 0.00 32.98 2.71
3783 3921 4.016962 TCCTTAACACTAATAGCCCCCT 57.983 45.455 0.00 0.00 0.00 4.79
3898 4036 1.522355 CGCTGTAGCCATCCCACAG 60.522 63.158 0.00 0.00 42.08 3.66
3904 4042 2.659897 CGAGCCGCTGTAGCCATC 60.660 66.667 0.00 0.00 37.91 3.51
3958 4096 0.815615 CCGGGAATTGCTCTACTGCC 60.816 60.000 0.00 0.00 0.00 4.85
4003 4141 5.719173 AGCATCTGTAGAGTCAGAAAACTC 58.281 41.667 0.62 0.00 45.65 3.01
4155 4293 7.870826 TGATATAGTAATGGCCAAATCGTTTG 58.129 34.615 10.96 4.20 40.32 2.93
4156 4294 8.458573 TTGATATAGTAATGGCCAAATCGTTT 57.541 30.769 10.96 0.00 0.00 3.60
4179 4317 9.153721 GATCTCAGGAAATCTATAATCTGCTTG 57.846 37.037 0.00 0.00 0.00 4.01
4181 4319 8.669055 AGATCTCAGGAAATCTATAATCTGCT 57.331 34.615 0.00 0.00 30.50 4.24
4275 4413 8.548721 GTTACAAGTTCCAGTTCATATATTCCG 58.451 37.037 0.00 0.00 0.00 4.30
4291 4430 7.882179 ACAGGATATTTGGTTGTTACAAGTTC 58.118 34.615 0.00 0.00 0.00 3.01
4418 4558 4.640771 TCTAAGGAATTTGTGCCTGTCT 57.359 40.909 0.00 0.00 34.00 3.41
4433 4573 8.844244 AGAAATGCACTGCTTAATTATCTAAGG 58.156 33.333 1.98 0.00 30.79 2.69
4435 4575 8.623903 CCAGAAATGCACTGCTTAATTATCTAA 58.376 33.333 1.98 0.00 34.47 2.10
4437 4577 6.604795 ACCAGAAATGCACTGCTTAATTATCT 59.395 34.615 1.98 0.00 34.47 1.98
4438 4578 6.799512 ACCAGAAATGCACTGCTTAATTATC 58.200 36.000 1.98 0.00 34.47 1.75
4439 4579 6.780457 ACCAGAAATGCACTGCTTAATTAT 57.220 33.333 1.98 0.00 34.47 1.28
4440 4580 6.208402 TGAACCAGAAATGCACTGCTTAATTA 59.792 34.615 1.98 0.00 34.47 1.40
4441 4581 5.010922 TGAACCAGAAATGCACTGCTTAATT 59.989 36.000 1.98 0.00 34.47 1.40
4442 4582 4.523943 TGAACCAGAAATGCACTGCTTAAT 59.476 37.500 1.98 0.00 34.47 1.40
4443 4583 3.888323 TGAACCAGAAATGCACTGCTTAA 59.112 39.130 1.98 0.00 34.47 1.85
4552 4693 7.016153 AGTGATTCAGGTTTACAAGGTATCA 57.984 36.000 0.00 0.00 0.00 2.15
4587 4729 8.736244 ACCAAAATGAATTTGTAAGTATACGCT 58.264 29.630 0.00 0.00 45.72 5.07
4588 4730 8.905103 ACCAAAATGAATTTGTAAGTATACGC 57.095 30.769 0.00 0.00 45.72 4.42
4628 4771 6.313164 GCACTGCCTACCTAAGTAAACTAAAG 59.687 42.308 0.00 0.00 0.00 1.85
4650 4793 3.378427 GGGTCCACAAGATAGAAATGCAC 59.622 47.826 0.00 0.00 0.00 4.57
4807 4976 7.330900 AGATGGAAGATGCATAAAGAACAAG 57.669 36.000 0.00 0.00 0.00 3.16
4887 5065 1.300971 GAAGTCCAGATGCAGCGCAA 61.301 55.000 11.47 0.00 43.62 4.85
4891 5069 2.482839 GGTCTAGAAGTCCAGATGCAGC 60.483 54.545 0.00 0.00 0.00 5.25
4945 5123 7.991084 TGAATGCCCAATGATCTAGAATAAG 57.009 36.000 0.00 0.00 0.00 1.73
5076 5254 3.762407 ATGCCAAAACTTTTGTACCCC 57.238 42.857 12.28 0.00 0.00 4.95
5082 5260 8.586570 TGTAGTATTCAATGCCAAAACTTTTG 57.413 30.769 7.21 7.21 0.00 2.44
5322 5611 6.586868 TGCATGTGAAATTGTTGTTCTTTC 57.413 33.333 0.00 0.00 0.00 2.62
5333 5622 5.601583 TCATTAGGCATGCATGTGAAATT 57.398 34.783 26.79 9.61 32.13 1.82
5344 5633 5.410439 TCGATTGTCATCATCATTAGGCATG 59.590 40.000 0.00 0.00 0.00 4.06
5445 5734 5.005740 TGCAGATGTTGAAAGCTCATACTT 58.994 37.500 0.00 0.00 0.00 2.24
5490 5779 4.507710 CTCTACCAAGAGTTTGCAGCATA 58.492 43.478 0.00 0.00 43.75 3.14
5503 5792 5.696724 CACCTACAACAGAAACTCTACCAAG 59.303 44.000 0.00 0.00 0.00 3.61
5504 5793 5.129815 ACACCTACAACAGAAACTCTACCAA 59.870 40.000 0.00 0.00 0.00 3.67
5507 5796 5.839621 TCACACCTACAACAGAAACTCTAC 58.160 41.667 0.00 0.00 0.00 2.59
5509 5798 4.649674 TCTCACACCTACAACAGAAACTCT 59.350 41.667 0.00 0.00 0.00 3.24
5510 5799 4.945246 TCTCACACCTACAACAGAAACTC 58.055 43.478 0.00 0.00 0.00 3.01
5512 5801 7.907214 AATATCTCACACCTACAACAGAAAC 57.093 36.000 0.00 0.00 0.00 2.78
5513 5802 9.431887 GTTAATATCTCACACCTACAACAGAAA 57.568 33.333 0.00 0.00 0.00 2.52
5514 5803 8.590204 TGTTAATATCTCACACCTACAACAGAA 58.410 33.333 0.00 0.00 0.00 3.02
5515 5804 8.033038 GTGTTAATATCTCACACCTACAACAGA 58.967 37.037 0.00 0.00 35.72 3.41
5517 5806 7.903145 AGTGTTAATATCTCACACCTACAACA 58.097 34.615 7.91 0.00 41.55 3.33
5518 5807 8.773404 AAGTGTTAATATCTCACACCTACAAC 57.227 34.615 7.91 0.00 41.55 3.32
5519 5808 8.812972 AGAAGTGTTAATATCTCACACCTACAA 58.187 33.333 7.91 0.00 41.55 2.41
5520 5809 8.251026 CAGAAGTGTTAATATCTCACACCTACA 58.749 37.037 7.91 0.00 41.55 2.74
5701 5990 6.994421 ATTTACTTCATGGTTTCCCACTTT 57.006 33.333 0.00 0.00 45.65 2.66
5730 6019 9.777297 ATGTTTGACTAGGCAAAACAATTTATT 57.223 25.926 25.23 7.20 39.26 1.40
5878 6168 2.288457 CGAAGGGTACATGAGATCGCAT 60.288 50.000 6.07 6.07 0.00 4.73
5992 6285 7.007995 GCAAATAATTCAGTAAGTAACAACGCC 59.992 37.037 0.00 0.00 0.00 5.68
5993 6286 7.007995 GGCAAATAATTCAGTAAGTAACAACGC 59.992 37.037 0.00 0.00 0.00 4.84
5994 6287 8.018520 TGGCAAATAATTCAGTAAGTAACAACG 58.981 33.333 0.00 0.00 0.00 4.10
6011 6321 7.428020 GCAGATTCAAGTCATATGGCAAATAA 58.572 34.615 10.50 0.00 0.00 1.40
6033 6343 4.421515 CTGGTCCCAGCCTGGCAG 62.422 72.222 22.65 13.43 35.79 4.85
6044 6354 4.161189 TGACATCTTCTGAAGATCTGGTCC 59.839 45.833 28.29 18.71 46.20 4.46
6076 6386 4.929781 ACAAGAGTAGAACGTTTCTTCGT 58.070 39.130 9.46 8.88 46.19 3.85
6128 6438 2.024414 GTTTTGCAGGGTCAACAGTCT 58.976 47.619 0.00 0.00 0.00 3.24
6133 6443 3.364964 CGAGTATGTTTTGCAGGGTCAAC 60.365 47.826 0.00 0.00 0.00 3.18
6220 6530 7.229506 CCCAAAAGAAATTGAGACTAACTCTGT 59.770 37.037 0.00 0.00 45.13 3.41
6321 6631 2.834549 GGATTCTCTGACCTGTCCTTCA 59.165 50.000 0.00 0.00 0.00 3.02
6447 6757 1.211703 TCACTTGTGTTGGGCTCTTCA 59.788 47.619 0.46 0.00 0.00 3.02
6609 6919 1.519455 GTCCATGTCCTCCTTCGCG 60.519 63.158 0.00 0.00 0.00 5.87
6714 7024 6.374333 ACAAAGTCAACTAAGCAAACAGAAGA 59.626 34.615 0.00 0.00 0.00 2.87
6874 7285 5.826208 ACCTTCTGAACAAACGGTTAAGATT 59.174 36.000 0.00 0.00 44.73 2.40
6917 7328 9.118300 AGATTCAGACAAATTGATGGATCTTAC 57.882 33.333 15.80 0.00 32.80 2.34
6976 7387 2.892215 TGCACCACACATGATGAACAAT 59.108 40.909 0.00 0.00 0.00 2.71
6993 7404 4.691860 AAGCAGACAGTATGAAATGCAC 57.308 40.909 0.00 0.00 41.95 4.57
7075 7491 4.846779 TGAATAACCACACAAAGCTTCC 57.153 40.909 0.00 0.00 0.00 3.46
7140 7557 0.032416 GGGGTGTGCCTAGACCTAGA 60.032 60.000 5.67 0.00 40.05 2.43
7153 7570 0.538746 CGGTTTGCCTAAAGGGGTGT 60.539 55.000 0.00 0.00 35.18 4.16
7167 7584 4.869451 AGAGAGATAACTAGGGACGGTTT 58.131 43.478 0.00 0.00 32.55 3.27
7188 7605 1.035923 TGAGGCAGAGATTAGGCGAG 58.964 55.000 0.00 0.00 35.18 5.03
7189 7606 0.747255 GTGAGGCAGAGATTAGGCGA 59.253 55.000 0.00 0.00 35.18 5.54
7190 7607 0.249657 GGTGAGGCAGAGATTAGGCG 60.250 60.000 0.00 0.00 35.18 5.52
7203 7620 2.093890 TGCATGCAAATGTAGGTGAGG 58.906 47.619 20.30 0.00 0.00 3.86
7204 7621 3.853831 TTGCATGCAAATGTAGGTGAG 57.146 42.857 30.19 0.00 32.44 3.51
7205 7622 4.804868 AATTGCATGCAAATGTAGGTGA 57.195 36.364 34.84 10.58 39.55 4.02
7206 7623 7.542534 AATTAATTGCATGCAAATGTAGGTG 57.457 32.000 34.84 0.00 39.55 4.00
7207 7624 8.477256 ACTAATTAATTGCATGCAAATGTAGGT 58.523 29.630 34.84 23.20 39.55 3.08
7305 11467 5.474578 TTCTCCCATCCGAAGAATGATAG 57.525 43.478 0.00 0.00 0.00 2.08
7306 11468 5.543790 TGATTCTCCCATCCGAAGAATGATA 59.456 40.000 1.82 0.00 34.39 2.15
7307 11469 4.349048 TGATTCTCCCATCCGAAGAATGAT 59.651 41.667 1.82 0.00 34.39 2.45
7320 11482 9.123902 CTTCATAATTAACATGTGATTCTCCCA 57.876 33.333 0.00 0.00 0.00 4.37
7344 11552 7.829211 TCCCGTTCAAAGAAATGATATTCTCTT 59.171 33.333 0.00 0.00 38.69 2.85
7377 11585 7.648177 AATTCCTTCTATCCAGGGCTATTAA 57.352 36.000 0.00 0.00 31.50 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.