Multiple sequence alignment - TraesCS5B01G096300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G096300 chr5B 100.000 2516 0 0 1 2516 127539081 127536566 0.000000e+00 4647.0
1 TraesCS5B01G096300 chr5A 92.841 908 48 10 703 1601 122998195 122997296 0.000000e+00 1301.0
2 TraesCS5B01G096300 chr5A 91.141 587 45 4 1763 2348 475516004 475516584 0.000000e+00 789.0
3 TraesCS5B01G096300 chr5A 78.387 657 135 6 49 703 571320661 571320010 1.080000e-113 420.0
4 TraesCS5B01G096300 chr5A 98.000 50 1 0 2467 2516 708825619 708825668 1.240000e-13 87.9
5 TraesCS5B01G096300 chr5D 92.834 907 48 10 706 1601 115975722 115974822 0.000000e+00 1299.0
6 TraesCS5B01G096300 chr5D 87.075 147 7 5 1628 1763 115974831 115974686 3.350000e-34 156.0
7 TraesCS5B01G096300 chr5D 93.750 80 5 0 2350 2429 115974692 115974613 1.220000e-23 121.0
8 TraesCS5B01G096300 chr6A 96.165 704 25 2 1 703 2869183 2869885 0.000000e+00 1149.0
9 TraesCS5B01G096300 chr6A 91.652 587 42 5 1764 2348 48087839 48087258 0.000000e+00 806.0
10 TraesCS5B01G096300 chr6A 95.751 353 14 1 354 705 495690714 495691066 3.630000e-158 568.0
11 TraesCS5B01G096300 chr6A 94.521 292 16 0 1 292 495690425 495690716 3.820000e-123 451.0
12 TraesCS5B01G096300 chr2B 91.980 586 44 1 1763 2348 757275534 757274952 0.000000e+00 819.0
13 TraesCS5B01G096300 chr2B 77.131 481 95 8 225 702 708192839 708193307 5.340000e-67 265.0
14 TraesCS5B01G096300 chr3A 91.695 590 45 2 1764 2353 42369271 42368686 0.000000e+00 815.0
15 TraesCS5B01G096300 chr3A 91.667 588 43 3 1764 2349 740092163 740092746 0.000000e+00 809.0
16 TraesCS5B01G096300 chr7B 90.630 587 47 6 1764 2349 494490254 494490833 0.000000e+00 773.0
17 TraesCS5B01G096300 chr1B 90.614 586 50 3 1764 2348 30737759 30737178 0.000000e+00 773.0
18 TraesCS5B01G096300 chr1B 81.061 660 102 13 49 703 638780749 638781390 2.890000e-139 505.0
19 TraesCS5B01G096300 chr1B 78.604 659 134 7 49 703 350249235 350249890 1.790000e-116 429.0
20 TraesCS5B01G096300 chr1B 90.625 64 3 3 2453 2516 484209153 484209213 5.770000e-12 82.4
21 TraesCS5B01G096300 chr3B 90.119 587 49 6 1764 2348 730402323 730401744 0.000000e+00 754.0
22 TraesCS5B01G096300 chr3B 89.420 586 55 4 1764 2348 730384411 730383832 0.000000e+00 732.0
23 TraesCS5B01G096300 chr4A 94.568 405 18 4 298 702 37292735 37293135 7.640000e-175 623.0
24 TraesCS5B01G096300 chr4A 95.960 198 7 1 120 317 37292430 37292626 1.120000e-83 320.0
25 TraesCS5B01G096300 chr7A 96.296 54 2 0 2463 2516 80991375 80991322 3.450000e-14 89.8
26 TraesCS5B01G096300 chr7A 100.000 48 0 0 2469 2516 166250101 166250148 3.450000e-14 89.8
27 TraesCS5B01G096300 chr7A 98.000 50 1 0 2467 2516 343347416 343347465 1.240000e-13 87.9
28 TraesCS5B01G096300 chr6B 100.000 48 0 0 2469 2516 225881581 225881534 3.450000e-14 89.8
29 TraesCS5B01G096300 chr6B 97.778 45 1 0 2472 2516 125581541 125581497 7.460000e-11 78.7
30 TraesCS5B01G096300 chr2A 93.103 58 2 2 2460 2516 68861333 68861277 1.600000e-12 84.2
31 TraesCS5B01G096300 chr2D 90.164 61 4 2 2457 2516 617992803 617992862 7.460000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G096300 chr5B 127536566 127539081 2515 True 4647.000000 4647 100.000000 1 2516 1 chr5B.!!$R1 2515
1 TraesCS5B01G096300 chr5A 122997296 122998195 899 True 1301.000000 1301 92.841000 703 1601 1 chr5A.!!$R1 898
2 TraesCS5B01G096300 chr5A 475516004 475516584 580 False 789.000000 789 91.141000 1763 2348 1 chr5A.!!$F1 585
3 TraesCS5B01G096300 chr5A 571320010 571320661 651 True 420.000000 420 78.387000 49 703 1 chr5A.!!$R2 654
4 TraesCS5B01G096300 chr5D 115974613 115975722 1109 True 525.333333 1299 91.219667 706 2429 3 chr5D.!!$R1 1723
5 TraesCS5B01G096300 chr6A 2869183 2869885 702 False 1149.000000 1149 96.165000 1 703 1 chr6A.!!$F1 702
6 TraesCS5B01G096300 chr6A 48087258 48087839 581 True 806.000000 806 91.652000 1764 2348 1 chr6A.!!$R1 584
7 TraesCS5B01G096300 chr6A 495690425 495691066 641 False 509.500000 568 95.136000 1 705 2 chr6A.!!$F2 704
8 TraesCS5B01G096300 chr2B 757274952 757275534 582 True 819.000000 819 91.980000 1763 2348 1 chr2B.!!$R1 585
9 TraesCS5B01G096300 chr3A 42368686 42369271 585 True 815.000000 815 91.695000 1764 2353 1 chr3A.!!$R1 589
10 TraesCS5B01G096300 chr3A 740092163 740092746 583 False 809.000000 809 91.667000 1764 2349 1 chr3A.!!$F1 585
11 TraesCS5B01G096300 chr7B 494490254 494490833 579 False 773.000000 773 90.630000 1764 2349 1 chr7B.!!$F1 585
12 TraesCS5B01G096300 chr1B 30737178 30737759 581 True 773.000000 773 90.614000 1764 2348 1 chr1B.!!$R1 584
13 TraesCS5B01G096300 chr1B 638780749 638781390 641 False 505.000000 505 81.061000 49 703 1 chr1B.!!$F3 654
14 TraesCS5B01G096300 chr1B 350249235 350249890 655 False 429.000000 429 78.604000 49 703 1 chr1B.!!$F1 654
15 TraesCS5B01G096300 chr3B 730401744 730402323 579 True 754.000000 754 90.119000 1764 2348 1 chr3B.!!$R2 584
16 TraesCS5B01G096300 chr3B 730383832 730384411 579 True 732.000000 732 89.420000 1764 2348 1 chr3B.!!$R1 584
17 TraesCS5B01G096300 chr4A 37292430 37293135 705 False 471.500000 623 95.264000 120 702 2 chr4A.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
922 1063 0.038709 GCTTGCTCTCACTCGTCACT 60.039 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1756 1915 0.026285 CCGCGCAACATAGCTTACAC 59.974 55.0 8.75 0.0 0.0 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.178068 CCCACCTATGGTTGTCTCGG 59.822 60.000 0.00 0.00 45.66 4.63
46 47 0.537188 CCTATGGTTGTCTCGGTGCT 59.463 55.000 0.00 0.00 0.00 4.40
142 143 9.553418 AAAGCACAACATTAATTTTGAACAAAC 57.447 25.926 18.78 4.07 0.00 2.93
147 148 7.552330 ACAACATTAATTTTGAACAAACAGCCT 59.448 29.630 18.78 0.00 0.00 4.58
171 172 1.364901 CAAGTGCAAGCCCCTGTTG 59.635 57.895 0.00 0.00 0.00 3.33
298 299 6.048732 TGTTGATGGCACTATTGTCTTCTA 57.951 37.500 0.00 0.00 33.62 2.10
308 309 5.007430 CACTATTGTCTTCTAAGCATGCAGG 59.993 44.000 21.98 9.29 0.00 4.85
388 514 5.918011 GGTTGTCTTTTGCAATTCAACGATA 59.082 36.000 19.72 1.14 36.88 2.92
515 651 9.923143 ATTAAATTTCTGTTAAACCTTAGGCAC 57.077 29.630 0.00 0.00 0.00 5.01
767 906 1.674359 TTGAACAGCTGCGGAAAGAA 58.326 45.000 15.27 0.00 0.00 2.52
784 923 3.008835 AGAAATAGCAGCCTGAATGCA 57.991 42.857 0.00 0.00 46.31 3.96
846 987 9.635520 GATCAATTGCTATTTTATGAATCCCTG 57.364 33.333 0.00 0.00 0.00 4.45
864 1005 3.054878 CCTGTGCTTGCTGTGAATTTTC 58.945 45.455 0.00 0.00 0.00 2.29
865 1006 3.243636 CCTGTGCTTGCTGTGAATTTTCT 60.244 43.478 0.00 0.00 0.00 2.52
869 1010 4.443394 GTGCTTGCTGTGAATTTTCTCTTG 59.557 41.667 0.00 0.00 0.00 3.02
870 1011 3.427863 GCTTGCTGTGAATTTTCTCTTGC 59.572 43.478 0.00 0.00 0.00 4.01
871 1012 4.613944 CTTGCTGTGAATTTTCTCTTGCA 58.386 39.130 0.00 0.00 33.20 4.08
872 1013 3.968649 TGCTGTGAATTTTCTCTTGCAC 58.031 40.909 0.00 0.00 31.63 4.57
874 1015 3.005155 GCTGTGAATTTTCTCTTGCACCT 59.995 43.478 0.00 0.00 0.00 4.00
875 1016 4.216257 GCTGTGAATTTTCTCTTGCACCTA 59.784 41.667 0.00 0.00 0.00 3.08
876 1017 5.689383 TGTGAATTTTCTCTTGCACCTAC 57.311 39.130 0.00 0.00 0.00 3.18
877 1018 5.129634 TGTGAATTTTCTCTTGCACCTACA 58.870 37.500 0.00 0.00 0.00 2.74
878 1019 5.239306 TGTGAATTTTCTCTTGCACCTACAG 59.761 40.000 0.00 0.00 0.00 2.74
917 1058 1.018226 CCCTTGCTTGCTCTCACTCG 61.018 60.000 0.00 0.00 0.00 4.18
922 1063 0.038709 GCTTGCTCTCACTCGTCACT 60.039 55.000 0.00 0.00 0.00 3.41
923 1064 1.975837 CTTGCTCTCACTCGTCACTC 58.024 55.000 0.00 0.00 0.00 3.51
924 1065 1.539388 CTTGCTCTCACTCGTCACTCT 59.461 52.381 0.00 0.00 0.00 3.24
927 1068 1.537638 GCTCTCACTCGTCACTCTTCA 59.462 52.381 0.00 0.00 0.00 3.02
928 1069 2.030717 GCTCTCACTCGTCACTCTTCAA 60.031 50.000 0.00 0.00 0.00 2.69
931 1072 5.553290 TCTCACTCGTCACTCTTCAATAG 57.447 43.478 0.00 0.00 0.00 1.73
1499 1647 4.208686 CCCTGCCGAGTACGCCTC 62.209 72.222 0.00 0.00 38.29 4.70
1501 1649 2.202623 CTGCCGAGTACGCCTCAC 60.203 66.667 3.89 0.00 40.48 3.51
1513 1661 0.320771 CGCCTCACTAAACCAGCACT 60.321 55.000 0.00 0.00 0.00 4.40
1556 1704 9.566432 AATTAATCTGCCCTTATAAGACAGAAG 57.434 33.333 27.60 15.75 40.18 2.85
1581 1729 7.841816 AGAATAAATCTACTGTCACGGTGAGTG 60.842 40.741 11.83 9.67 43.93 3.51
1591 1739 1.202348 CACGGTGAGTGCATGTCTCTA 59.798 52.381 0.74 5.44 44.72 2.43
1592 1740 2.103373 ACGGTGAGTGCATGTCTCTAT 58.897 47.619 16.58 2.80 33.59 1.98
1593 1741 2.497675 ACGGTGAGTGCATGTCTCTATT 59.502 45.455 16.58 2.14 33.59 1.73
1594 1742 3.055819 ACGGTGAGTGCATGTCTCTATTT 60.056 43.478 16.58 2.40 33.59 1.40
1595 1743 3.935203 CGGTGAGTGCATGTCTCTATTTT 59.065 43.478 16.58 0.00 33.59 1.82
1596 1744 4.201753 CGGTGAGTGCATGTCTCTATTTTG 60.202 45.833 16.58 3.20 33.59 2.44
1597 1745 4.937620 GGTGAGTGCATGTCTCTATTTTGA 59.062 41.667 16.58 0.00 33.59 2.69
1598 1746 5.587844 GGTGAGTGCATGTCTCTATTTTGAT 59.412 40.000 16.58 0.00 33.59 2.57
1599 1747 6.457934 GGTGAGTGCATGTCTCTATTTTGATG 60.458 42.308 16.58 0.00 33.59 3.07
1600 1748 6.314648 GTGAGTGCATGTCTCTATTTTGATGA 59.685 38.462 16.58 0.00 33.59 2.92
1601 1749 6.880529 TGAGTGCATGTCTCTATTTTGATGAA 59.119 34.615 16.58 0.00 33.59 2.57
1602 1750 7.391275 TGAGTGCATGTCTCTATTTTGATGAAA 59.609 33.333 16.58 0.00 33.59 2.69
1603 1751 8.289939 AGTGCATGTCTCTATTTTGATGAAAT 57.710 30.769 0.00 0.00 40.88 2.17
1604 1752 8.404000 AGTGCATGTCTCTATTTTGATGAAATC 58.596 33.333 0.00 0.00 45.83 2.17
1634 1782 7.225931 TGTGAAAGATAAATCTACCATTACGGC 59.774 37.037 0.00 0.00 35.18 5.68
1652 1800 2.669364 GGCGAGTATATACCGGTGTTG 58.331 52.381 19.93 0.00 0.00 3.33
1654 1802 3.303406 GCGAGTATATACCGGTGTTGTC 58.697 50.000 19.93 5.41 0.00 3.18
1661 1809 0.753867 TACCGGTGTTGTCTGCTTCA 59.246 50.000 19.93 0.00 0.00 3.02
1699 1851 6.960542 TGAGAAGAAAGGAGGGTCTTTAGTAT 59.039 38.462 0.00 0.00 37.13 2.12
1756 1915 5.313623 CCTGTTTTAAGCTCGTATTTCGTG 58.686 41.667 0.00 0.00 40.80 4.35
1757 1916 5.107220 CCTGTTTTAAGCTCGTATTTCGTGT 60.107 40.000 0.00 0.00 40.80 4.49
1758 1917 5.672051 TGTTTTAAGCTCGTATTTCGTGTG 58.328 37.500 0.00 0.00 40.80 3.82
1759 1918 5.234757 TGTTTTAAGCTCGTATTTCGTGTGT 59.765 36.000 0.00 0.00 40.80 3.72
1760 1919 6.420306 TGTTTTAAGCTCGTATTTCGTGTGTA 59.580 34.615 0.00 0.00 40.80 2.90
1761 1920 7.042858 TGTTTTAAGCTCGTATTTCGTGTGTAA 60.043 33.333 0.00 0.00 40.80 2.41
1766 1925 4.738740 GCTCGTATTTCGTGTGTAAGCTAT 59.261 41.667 0.00 0.00 40.80 2.97
1792 1951 1.640428 CGGATACTTCAGAAAGCGCA 58.360 50.000 11.47 0.00 35.81 6.09
1804 1963 1.084370 AAAGCGCACGTATCCAGCTC 61.084 55.000 11.47 0.00 37.15 4.09
1987 2150 5.669798 AATCCCCTCAATAGTAAAGGCAT 57.330 39.130 0.00 0.00 0.00 4.40
2030 2193 2.625790 TGGGTGTGAGTTTATGCCAAAC 59.374 45.455 3.45 3.45 0.00 2.93
2034 2197 4.262420 GGTGTGAGTTTATGCCAAACCATT 60.262 41.667 7.26 0.00 37.95 3.16
2036 2199 6.350949 GGTGTGAGTTTATGCCAAACCATTAT 60.351 38.462 7.26 0.00 37.95 1.28
2044 2207 9.593134 GTTTATGCCAAACCATTATTGTCAATA 57.407 29.630 0.89 0.89 0.00 1.90
2067 2230 6.566197 ATTCTTGTTCAATTGAGAGGTGAC 57.434 37.500 8.41 3.58 0.00 3.67
2079 2242 3.330998 TGAGAGGTGACCAAGAGAGAGTA 59.669 47.826 3.63 0.00 0.00 2.59
2096 2259 5.366186 AGAGAGTAGATGCACTGATTGGAAT 59.634 40.000 0.00 0.00 0.00 3.01
2108 2273 4.013728 CTGATTGGAATAACAAACCCGGA 58.986 43.478 0.73 0.00 33.48 5.14
2112 2277 4.587584 TGGAATAACAAACCCGGAAAAC 57.412 40.909 0.73 0.00 0.00 2.43
2118 2283 1.133294 ACAAACCCGGAAAACTCCCAT 60.133 47.619 0.73 0.00 0.00 4.00
2144 2309 6.036470 GCTAATTAATGAAAGTGGACCAAGC 58.964 40.000 0.00 0.00 0.00 4.01
2164 2329 3.572255 AGCGCAAGAAAACAAAGGGAATA 59.428 39.130 11.47 0.00 43.02 1.75
2165 2330 4.038642 AGCGCAAGAAAACAAAGGGAATAA 59.961 37.500 11.47 0.00 43.02 1.40
2166 2331 4.929211 GCGCAAGAAAACAAAGGGAATAAT 59.071 37.500 0.30 0.00 43.02 1.28
2207 2372 7.620880 TGCTTTGACCTAGAAGCTCTATTTTA 58.379 34.615 13.29 0.00 46.39 1.52
2303 2468 2.633509 GGCGTATCGGGCGTATCCT 61.634 63.158 0.00 0.00 34.39 3.24
2335 2500 7.010460 CGTGTATCCGATACGTATCCAAGTATA 59.990 40.741 25.89 14.64 37.83 1.47
2408 2573 8.593492 ATTTGAGCAGTCTGGTTTTATTTTTC 57.407 30.769 5.91 0.00 0.00 2.29
2410 2575 5.121221 AGCAGTCTGGTTTTATTTTTCGG 57.879 39.130 0.00 0.00 0.00 4.30
2418 2583 3.749088 GGTTTTATTTTTCGGCAAAGGGG 59.251 43.478 0.00 0.00 0.00 4.79
2426 2591 0.772384 TCGGCAAAGGGGGTTCTTTA 59.228 50.000 0.00 0.00 35.44 1.85
2429 2594 3.010361 TCGGCAAAGGGGGTTCTTTATTA 59.990 43.478 0.00 0.00 35.44 0.98
2430 2595 3.764972 CGGCAAAGGGGGTTCTTTATTAA 59.235 43.478 0.00 0.00 35.44 1.40
2431 2596 4.381185 CGGCAAAGGGGGTTCTTTATTAAC 60.381 45.833 0.00 0.00 35.44 2.01
2432 2597 4.775780 GGCAAAGGGGGTTCTTTATTAACT 59.224 41.667 0.00 0.00 35.44 2.24
2433 2598 5.105473 GGCAAAGGGGGTTCTTTATTAACTC 60.105 44.000 0.00 0.00 35.44 3.01
2434 2599 5.479027 GCAAAGGGGGTTCTTTATTAACTCA 59.521 40.000 0.00 0.00 35.44 3.41
2435 2600 6.154534 GCAAAGGGGGTTCTTTATTAACTCAT 59.845 38.462 0.00 0.00 35.44 2.90
2436 2601 7.547227 CAAAGGGGGTTCTTTATTAACTCATG 58.453 38.462 0.00 0.00 35.44 3.07
2437 2602 6.652205 AGGGGGTTCTTTATTAACTCATGA 57.348 37.500 0.00 0.00 0.00 3.07
2438 2603 6.663734 AGGGGGTTCTTTATTAACTCATGAG 58.336 40.000 21.37 21.37 0.00 2.90
2439 2604 6.217693 AGGGGGTTCTTTATTAACTCATGAGT 59.782 38.462 22.89 22.89 44.94 3.41
2440 2605 6.318900 GGGGGTTCTTTATTAACTCATGAGTG 59.681 42.308 28.52 14.17 41.58 3.51
2441 2606 6.884836 GGGGTTCTTTATTAACTCATGAGTGT 59.115 38.462 28.52 19.39 41.58 3.55
2442 2607 8.044908 GGGGTTCTTTATTAACTCATGAGTGTA 58.955 37.037 28.52 19.02 41.58 2.90
2443 2608 9.099454 GGGTTCTTTATTAACTCATGAGTGTAG 57.901 37.037 28.52 17.50 41.58 2.74
2444 2609 9.871238 GGTTCTTTATTAACTCATGAGTGTAGA 57.129 33.333 28.52 19.17 41.58 2.59
2449 2614 8.703604 TTATTAACTCATGAGTGTAGAACTGC 57.296 34.615 28.52 0.00 41.58 4.40
2450 2615 4.607293 AACTCATGAGTGTAGAACTGCA 57.393 40.909 28.52 0.00 41.58 4.41
2451 2616 3.919216 ACTCATGAGTGTAGAACTGCAC 58.081 45.455 27.37 13.51 44.81 4.57
2452 2617 3.321968 ACTCATGAGTGTAGAACTGCACA 59.678 43.478 27.37 5.92 46.48 4.57
2453 2618 3.653344 TCATGAGTGTAGAACTGCACAC 58.347 45.455 20.88 16.26 46.48 3.82
2454 2619 3.069443 TCATGAGTGTAGAACTGCACACA 59.931 43.478 19.73 19.73 46.48 3.72
2455 2620 2.821546 TGAGTGTAGAACTGCACACAC 58.178 47.619 20.88 10.49 46.48 3.82
2456 2621 2.167487 TGAGTGTAGAACTGCACACACA 59.833 45.455 20.88 15.29 46.48 3.72
2457 2622 3.194861 GAGTGTAGAACTGCACACACAA 58.805 45.455 20.88 0.00 46.48 3.33
2458 2623 2.936498 AGTGTAGAACTGCACACACAAC 59.064 45.455 20.88 0.00 46.48 3.32
2459 2624 2.675844 GTGTAGAACTGCACACACAACA 59.324 45.455 15.78 0.00 44.06 3.33
2460 2625 3.126171 GTGTAGAACTGCACACACAACAA 59.874 43.478 15.78 0.00 44.06 2.83
2461 2626 3.944650 TGTAGAACTGCACACACAACAAT 59.055 39.130 0.00 0.00 0.00 2.71
2462 2627 3.425577 AGAACTGCACACACAACAATG 57.574 42.857 0.00 0.00 0.00 2.82
2463 2628 3.016031 AGAACTGCACACACAACAATGA 58.984 40.909 0.00 0.00 0.00 2.57
2464 2629 3.065786 AGAACTGCACACACAACAATGAG 59.934 43.478 0.00 0.00 0.00 2.90
2465 2630 1.066002 ACTGCACACACAACAATGAGC 59.934 47.619 0.00 0.00 0.00 4.26
2466 2631 1.065851 CTGCACACACAACAATGAGCA 59.934 47.619 0.00 0.00 0.00 4.26
2467 2632 1.065851 TGCACACACAACAATGAGCAG 59.934 47.619 0.00 0.00 0.00 4.24
2468 2633 1.066002 GCACACACAACAATGAGCAGT 59.934 47.619 0.00 0.00 0.00 4.40
2469 2634 2.723209 CACACACAACAATGAGCAGTG 58.277 47.619 0.00 0.00 36.34 3.66
2470 2635 1.066002 ACACACAACAATGAGCAGTGC 59.934 47.619 7.13 7.13 33.69 4.40
2471 2636 1.335810 CACACAACAATGAGCAGTGCT 59.664 47.619 19.86 19.86 43.88 4.40
2472 2637 2.549329 CACACAACAATGAGCAGTGCTA 59.451 45.455 19.77 7.18 39.88 3.49
2473 2638 2.549754 ACACAACAATGAGCAGTGCTAC 59.450 45.455 19.77 12.30 39.88 3.58
2474 2639 2.810274 CACAACAATGAGCAGTGCTACT 59.190 45.455 19.77 5.24 39.88 2.57
2475 2640 3.996363 CACAACAATGAGCAGTGCTACTA 59.004 43.478 19.77 8.18 39.88 1.82
2476 2641 3.997021 ACAACAATGAGCAGTGCTACTAC 59.003 43.478 19.77 6.06 39.88 2.73
2477 2642 3.252974 ACAATGAGCAGTGCTACTACC 57.747 47.619 19.77 5.64 39.88 3.18
2478 2643 2.834549 ACAATGAGCAGTGCTACTACCT 59.165 45.455 19.77 0.00 39.88 3.08
2479 2644 3.118956 ACAATGAGCAGTGCTACTACCTC 60.119 47.826 19.77 4.32 39.88 3.85
2480 2645 1.475403 TGAGCAGTGCTACTACCTCC 58.525 55.000 19.77 3.19 39.88 4.30
2481 2646 0.382515 GAGCAGTGCTACTACCTCCG 59.617 60.000 19.77 0.00 39.88 4.63
2482 2647 0.323542 AGCAGTGCTACTACCTCCGT 60.324 55.000 18.11 0.00 36.99 4.69
2483 2648 0.100861 GCAGTGCTACTACCTCCGTC 59.899 60.000 8.18 0.00 0.00 4.79
2484 2649 1.752683 CAGTGCTACTACCTCCGTCT 58.247 55.000 0.00 0.00 0.00 4.18
2485 2650 2.915349 CAGTGCTACTACCTCCGTCTA 58.085 52.381 0.00 0.00 0.00 2.59
2486 2651 2.873472 CAGTGCTACTACCTCCGTCTAG 59.127 54.545 0.00 0.00 0.00 2.43
2487 2652 2.158784 AGTGCTACTACCTCCGTCTAGG 60.159 54.545 0.00 0.00 42.82 3.02
2497 2662 4.571372 CCTCCGTCTAGGTGAATAAGTC 57.429 50.000 0.00 0.00 41.99 3.01
2498 2663 3.952323 CCTCCGTCTAGGTGAATAAGTCA 59.048 47.826 0.00 0.00 41.99 3.41
2499 2664 4.585162 CCTCCGTCTAGGTGAATAAGTCAT 59.415 45.833 0.00 0.00 38.90 3.06
2500 2665 5.069251 CCTCCGTCTAGGTGAATAAGTCATT 59.931 44.000 0.00 0.00 38.90 2.57
2501 2666 6.145338 TCCGTCTAGGTGAATAAGTCATTC 57.855 41.667 0.00 0.00 40.27 2.67
2502 2667 4.976731 CCGTCTAGGTGAATAAGTCATTCG 59.023 45.833 0.00 0.00 45.25 3.34
2509 2674 5.697848 GTGAATAAGTCATTCGCGTAGTT 57.302 39.130 5.77 2.59 45.25 2.24
2510 2675 5.715264 GTGAATAAGTCATTCGCGTAGTTC 58.285 41.667 5.77 0.29 45.25 3.01
2511 2676 5.515626 GTGAATAAGTCATTCGCGTAGTTCT 59.484 40.000 5.77 0.00 45.25 3.01
2512 2677 6.690098 GTGAATAAGTCATTCGCGTAGTTCTA 59.310 38.462 5.77 0.00 45.25 2.10
2513 2678 6.910972 TGAATAAGTCATTCGCGTAGTTCTAG 59.089 38.462 5.77 0.00 45.25 2.43
2514 2679 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2515 2680 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 1.267806 CTTGCACTTGTGGTAAGGCTG 59.732 52.381 2.81 0.00 0.00 4.85
147 148 0.825840 GGGGCTTGCACTTGTGGTAA 60.826 55.000 2.81 0.00 0.00 2.85
171 172 2.922335 GCGGTTTCCATGAAGTTTCAGC 60.922 50.000 0.00 0.00 41.08 4.26
308 309 3.299340 TCTCTACACGAGAACAAAGCC 57.701 47.619 0.00 0.00 45.55 4.35
388 514 5.933617 TCTCGATTTCAATGGGAAGATCAT 58.066 37.500 0.00 0.00 36.72 2.45
515 651 5.524284 CGAGGGACATGAGTAATACAAGAG 58.476 45.833 0.00 0.00 0.00 2.85
721 859 0.250858 CCCATGTGTTCCTGTGCAGA 60.251 55.000 0.02 0.00 0.00 4.26
722 860 0.250858 TCCCATGTGTTCCTGTGCAG 60.251 55.000 0.00 0.00 0.00 4.41
723 861 0.184692 TTCCCATGTGTTCCTGTGCA 59.815 50.000 0.00 0.00 0.00 4.57
767 906 1.341285 TGGTGCATTCAGGCTGCTATT 60.341 47.619 10.34 0.00 40.34 1.73
784 923 1.774254 TCACATGGTTGGACTCTTGGT 59.226 47.619 0.00 0.00 0.00 3.67
846 987 4.234530 AGAGAAAATTCACAGCAAGCAC 57.765 40.909 0.00 0.00 0.00 4.40
864 1005 7.753309 ATATAGAGTACTGTAGGTGCAAGAG 57.247 40.000 0.00 0.00 32.88 2.85
865 1006 9.636789 TTTATATAGAGTACTGTAGGTGCAAGA 57.363 33.333 0.00 0.00 32.88 3.02
871 1012 9.245481 GGCTGATTTATATAGAGTACTGTAGGT 57.755 37.037 0.00 0.00 0.00 3.08
872 1013 8.688151 GGGCTGATTTATATAGAGTACTGTAGG 58.312 40.741 0.00 0.00 0.00 3.18
874 1015 7.618512 GGGGGCTGATTTATATAGAGTACTGTA 59.381 40.741 0.00 0.00 0.00 2.74
875 1016 6.440965 GGGGGCTGATTTATATAGAGTACTGT 59.559 42.308 0.00 0.00 0.00 3.55
876 1017 6.670027 AGGGGGCTGATTTATATAGAGTACTG 59.330 42.308 0.00 0.00 0.00 2.74
877 1018 6.816960 AGGGGGCTGATTTATATAGAGTACT 58.183 40.000 0.00 0.00 0.00 2.73
878 1019 7.331791 CAAGGGGGCTGATTTATATAGAGTAC 58.668 42.308 0.00 0.00 0.00 2.73
896 1037 1.676967 GTGAGAGCAAGCAAGGGGG 60.677 63.158 0.00 0.00 0.00 5.40
917 1058 9.042008 TGTTTCAAACTACTATTGAAGAGTGAC 57.958 33.333 2.21 0.00 44.83 3.67
927 1068 8.565416 GCTGGTAAGTTGTTTCAAACTACTATT 58.435 33.333 16.34 6.14 44.62 1.73
928 1069 7.717875 TGCTGGTAAGTTGTTTCAAACTACTAT 59.282 33.333 16.34 10.05 44.62 2.12
931 1072 6.126568 TGCTGGTAAGTTGTTTCAAACTAC 57.873 37.500 6.74 6.74 39.48 2.73
1213 1361 2.503061 CAGGCGGGTCCTCATCAG 59.497 66.667 0.00 0.00 45.52 2.90
1254 1402 1.078759 GCACCTCCGTCTTGATCACG 61.079 60.000 0.00 0.00 36.99 4.35
1499 1647 5.700832 TGATGTTTCTAGTGCTGGTTTAGTG 59.299 40.000 0.00 0.00 0.00 2.74
1501 1649 6.166279 TCTGATGTTTCTAGTGCTGGTTTAG 58.834 40.000 0.00 0.00 0.00 1.85
1556 1704 6.253727 CACTCACCGTGACAGTAGATTTATTC 59.746 42.308 0.00 0.00 46.81 1.75
1569 1717 0.319900 AGACATGCACTCACCGTGAC 60.320 55.000 0.00 0.00 46.81 3.67
1607 1755 9.273016 CCGTAATGGTAGATTTATCTTTCACAT 57.727 33.333 0.00 0.00 38.32 3.21
1608 1756 7.225931 GCCGTAATGGTAGATTTATCTTTCACA 59.774 37.037 0.00 0.00 41.21 3.58
1609 1757 7.568861 CGCCGTAATGGTAGATTTATCTTTCAC 60.569 40.741 0.00 0.00 41.21 3.18
1610 1758 6.422701 CGCCGTAATGGTAGATTTATCTTTCA 59.577 38.462 0.00 0.00 41.21 2.69
1611 1759 6.643770 TCGCCGTAATGGTAGATTTATCTTTC 59.356 38.462 0.00 0.00 41.21 2.62
1612 1760 6.518493 TCGCCGTAATGGTAGATTTATCTTT 58.482 36.000 0.00 0.00 41.21 2.52
1613 1761 6.092955 TCGCCGTAATGGTAGATTTATCTT 57.907 37.500 0.00 0.00 41.21 2.40
1614 1762 5.243283 ACTCGCCGTAATGGTAGATTTATCT 59.757 40.000 0.00 0.00 41.21 1.98
1615 1763 5.467705 ACTCGCCGTAATGGTAGATTTATC 58.532 41.667 0.00 0.00 41.21 1.75
1616 1764 5.464030 ACTCGCCGTAATGGTAGATTTAT 57.536 39.130 0.00 0.00 41.21 1.40
1617 1765 4.924305 ACTCGCCGTAATGGTAGATTTA 57.076 40.909 0.00 0.00 41.21 1.40
1618 1766 3.814005 ACTCGCCGTAATGGTAGATTT 57.186 42.857 0.00 0.00 41.21 2.17
1619 1767 6.770746 ATATACTCGCCGTAATGGTAGATT 57.229 37.500 0.00 0.00 41.21 2.40
1620 1768 6.261826 GGTATATACTCGCCGTAATGGTAGAT 59.738 42.308 12.54 0.00 41.21 1.98
1621 1769 5.586243 GGTATATACTCGCCGTAATGGTAGA 59.414 44.000 12.54 0.00 41.21 2.59
1622 1770 5.503031 CGGTATATACTCGCCGTAATGGTAG 60.503 48.000 12.54 0.00 41.21 3.18
1623 1771 4.332543 CGGTATATACTCGCCGTAATGGTA 59.667 45.833 12.54 0.00 41.21 3.25
1624 1772 3.127548 CGGTATATACTCGCCGTAATGGT 59.872 47.826 12.54 0.00 41.21 3.55
1625 1773 3.488047 CCGGTATATACTCGCCGTAATGG 60.488 52.174 12.54 0.00 42.36 3.16
1626 1774 3.127548 ACCGGTATATACTCGCCGTAATG 59.872 47.826 4.49 3.59 42.36 1.90
1631 1779 0.877071 ACACCGGTATATACTCGCCG 59.123 55.000 6.87 7.57 43.40 6.46
1634 1782 4.534168 CAGACAACACCGGTATATACTCG 58.466 47.826 6.87 13.15 0.00 4.18
1652 1800 2.533535 CGAAGTCGATCATGAAGCAGAC 59.466 50.000 0.00 7.26 43.02 3.51
1654 1802 2.280971 CACGAAGTCGATCATGAAGCAG 59.719 50.000 7.87 0.00 41.61 4.24
1661 1809 4.703645 TTCTTCTCACGAAGTCGATCAT 57.296 40.909 7.87 0.00 45.47 2.45
1683 1831 7.809880 AACAGTTTATACTAAAGACCCTCCT 57.190 36.000 0.00 0.00 31.96 3.69
1730 1889 5.445540 CGAAATACGAGCTTAAAACAGGGAC 60.446 44.000 0.00 0.00 45.77 4.46
1756 1915 0.026285 CCGCGCAACATAGCTTACAC 59.974 55.000 8.75 0.00 0.00 2.90
1757 1916 0.108567 TCCGCGCAACATAGCTTACA 60.109 50.000 8.75 0.00 0.00 2.41
1758 1917 1.217882 ATCCGCGCAACATAGCTTAC 58.782 50.000 8.75 0.00 0.00 2.34
1759 1918 2.035449 AGTATCCGCGCAACATAGCTTA 59.965 45.455 8.75 0.00 0.00 3.09
1760 1919 1.202533 AGTATCCGCGCAACATAGCTT 60.203 47.619 8.75 0.00 0.00 3.74
1761 1920 0.389391 AGTATCCGCGCAACATAGCT 59.611 50.000 8.75 0.00 0.00 3.32
1766 1925 0.245266 TCTGAAGTATCCGCGCAACA 59.755 50.000 8.75 0.00 0.00 3.33
1804 1963 1.336887 CCGAGTATTGGGGCAGTATCG 60.337 57.143 0.00 0.00 35.34 2.92
1987 2150 5.949354 CCATGTTGGGTATCTTCAAAAGGTA 59.051 40.000 0.00 0.00 32.67 3.08
2021 2184 9.979578 GAATATTGACAATAATGGTTTGGCATA 57.020 29.630 11.80 0.00 41.55 3.14
2044 2207 5.474876 GGTCACCTCTCAATTGAACAAGAAT 59.525 40.000 9.88 0.00 0.00 2.40
2060 2223 3.958018 TCTACTCTCTCTTGGTCACCTC 58.042 50.000 0.00 0.00 0.00 3.85
2067 2230 3.698539 TCAGTGCATCTACTCTCTCTTGG 59.301 47.826 0.00 0.00 0.00 3.61
2079 2242 6.350445 GGTTTGTTATTCCAATCAGTGCATCT 60.350 38.462 0.00 0.00 0.00 2.90
2096 2259 2.091994 TGGGAGTTTTCCGGGTTTGTTA 60.092 45.455 0.00 0.00 45.04 2.41
2108 2273 9.657419 CTTTCATTAATTAGCAATGGGAGTTTT 57.343 29.630 0.71 0.00 34.73 2.43
2112 2277 7.068593 TCCACTTTCATTAATTAGCAATGGGAG 59.931 37.037 0.71 2.32 34.73 4.30
2118 2283 7.531857 TTGGTCCACTTTCATTAATTAGCAA 57.468 32.000 0.00 0.00 0.00 3.91
2144 2309 8.702163 ATTATTATTCCCTTTGTTTTCTTGCG 57.298 30.769 0.00 0.00 0.00 4.85
2261 2426 7.387397 GCCAATTTTCTGAAAACATGGATACAA 59.613 33.333 32.60 8.70 41.58 2.41
2335 2500 1.724623 CTTACACGCTATGTTGCACGT 59.275 47.619 0.00 0.00 43.19 4.49
2394 2559 4.450757 CCCTTTGCCGAAAAATAAAACCAG 59.549 41.667 0.00 0.00 0.00 4.00
2408 2573 1.847328 ATAAAGAACCCCCTTTGCCG 58.153 50.000 0.00 0.00 37.02 5.69
2410 2575 5.479027 TGAGTTAATAAAGAACCCCCTTTGC 59.521 40.000 0.00 0.00 37.02 3.68
2418 2583 9.871238 TCTACACTCATGAGTTAATAAAGAACC 57.129 33.333 25.84 0.00 40.20 3.62
2426 2591 6.591834 GTGCAGTTCTACACTCATGAGTTAAT 59.408 38.462 25.84 16.03 40.20 1.40
2429 2594 4.202253 TGTGCAGTTCTACACTCATGAGTT 60.202 41.667 25.84 18.16 40.20 3.01
2430 2595 3.321968 TGTGCAGTTCTACACTCATGAGT 59.678 43.478 22.89 22.89 43.61 3.41
2431 2596 3.677121 GTGTGCAGTTCTACACTCATGAG 59.323 47.826 21.37 21.37 42.86 2.90
2432 2597 3.069443 TGTGTGCAGTTCTACACTCATGA 59.931 43.478 8.69 0.00 45.57 3.07
2433 2598 3.185188 GTGTGTGCAGTTCTACACTCATG 59.815 47.826 9.93 0.00 45.57 3.07
2434 2599 3.181466 TGTGTGTGCAGTTCTACACTCAT 60.181 43.478 14.88 0.00 45.57 2.90
2435 2600 2.167487 TGTGTGTGCAGTTCTACACTCA 59.833 45.455 14.88 8.24 45.57 3.41
2436 2601 2.821546 TGTGTGTGCAGTTCTACACTC 58.178 47.619 14.88 5.98 45.57 3.51
2437 2602 2.936498 GTTGTGTGTGCAGTTCTACACT 59.064 45.455 14.88 0.00 45.57 3.55
2438 2603 2.675844 TGTTGTGTGTGCAGTTCTACAC 59.324 45.455 9.75 9.75 45.57 2.90
2439 2604 2.979240 TGTTGTGTGTGCAGTTCTACA 58.021 42.857 0.00 0.00 0.00 2.74
2440 2605 4.035091 TCATTGTTGTGTGTGCAGTTCTAC 59.965 41.667 0.00 0.00 0.00 2.59
2441 2606 4.195416 TCATTGTTGTGTGTGCAGTTCTA 58.805 39.130 0.00 0.00 0.00 2.10
2442 2607 3.016031 TCATTGTTGTGTGTGCAGTTCT 58.984 40.909 0.00 0.00 0.00 3.01
2443 2608 3.365832 CTCATTGTTGTGTGTGCAGTTC 58.634 45.455 0.00 0.00 0.00 3.01
2444 2609 2.480073 GCTCATTGTTGTGTGTGCAGTT 60.480 45.455 0.00 0.00 35.54 3.16
2445 2610 1.066002 GCTCATTGTTGTGTGTGCAGT 59.934 47.619 0.00 0.00 35.54 4.40
2446 2611 1.065851 TGCTCATTGTTGTGTGTGCAG 59.934 47.619 0.00 0.00 39.18 4.41
2447 2612 1.065851 CTGCTCATTGTTGTGTGTGCA 59.934 47.619 0.00 0.00 41.03 4.57
2448 2613 1.066002 ACTGCTCATTGTTGTGTGTGC 59.934 47.619 0.00 0.00 35.90 4.57
2449 2614 2.723209 CACTGCTCATTGTTGTGTGTG 58.277 47.619 0.00 0.00 0.00 3.82
2450 2615 1.066002 GCACTGCTCATTGTTGTGTGT 59.934 47.619 0.00 0.00 0.00 3.72
2451 2616 1.335810 AGCACTGCTCATTGTTGTGTG 59.664 47.619 0.00 0.00 30.62 3.82
2452 2617 1.683943 AGCACTGCTCATTGTTGTGT 58.316 45.000 0.00 0.00 30.62 3.72
2453 2618 2.810274 AGTAGCACTGCTCATTGTTGTG 59.190 45.455 6.86 0.00 40.44 3.33
2454 2619 3.131709 AGTAGCACTGCTCATTGTTGT 57.868 42.857 6.86 0.00 40.44 3.32
2455 2620 3.372206 GGTAGTAGCACTGCTCATTGTTG 59.628 47.826 6.86 0.00 40.44 3.33
2456 2621 3.261897 AGGTAGTAGCACTGCTCATTGTT 59.738 43.478 6.86 0.00 40.44 2.83
2457 2622 2.834549 AGGTAGTAGCACTGCTCATTGT 59.165 45.455 6.86 0.00 40.44 2.71
2458 2623 3.452474 GAGGTAGTAGCACTGCTCATTG 58.548 50.000 6.86 0.00 40.44 2.82
2459 2624 2.432510 GGAGGTAGTAGCACTGCTCATT 59.567 50.000 6.86 0.00 40.44 2.57
2460 2625 2.035632 GGAGGTAGTAGCACTGCTCAT 58.964 52.381 6.86 0.00 40.44 2.90
2461 2626 1.475403 GGAGGTAGTAGCACTGCTCA 58.525 55.000 6.86 0.00 40.44 4.26
2462 2627 0.382515 CGGAGGTAGTAGCACTGCTC 59.617 60.000 6.86 0.00 40.44 4.26
2463 2628 0.323542 ACGGAGGTAGTAGCACTGCT 60.324 55.000 8.95 8.95 43.41 4.24
2464 2629 0.100861 GACGGAGGTAGTAGCACTGC 59.899 60.000 5.63 0.00 0.00 4.40
2465 2630 1.752683 AGACGGAGGTAGTAGCACTG 58.247 55.000 1.58 3.10 0.00 3.66
2466 2631 2.158784 CCTAGACGGAGGTAGTAGCACT 60.159 54.545 1.58 0.00 33.16 4.40
2467 2632 2.220313 CCTAGACGGAGGTAGTAGCAC 58.780 57.143 1.58 0.00 33.16 4.40
2468 2633 2.634815 CCTAGACGGAGGTAGTAGCA 57.365 55.000 1.58 0.00 33.16 3.49
2476 2641 3.952323 TGACTTATTCACCTAGACGGAGG 59.048 47.826 0.00 0.00 42.89 4.30
2477 2642 5.776173 ATGACTTATTCACCTAGACGGAG 57.224 43.478 0.00 0.00 36.92 4.63
2478 2643 5.220989 CGAATGACTTATTCACCTAGACGGA 60.221 44.000 0.00 0.00 44.42 4.69
2479 2644 4.976731 CGAATGACTTATTCACCTAGACGG 59.023 45.833 0.00 0.00 44.42 4.79
2480 2645 4.441415 GCGAATGACTTATTCACCTAGACG 59.559 45.833 0.00 0.00 44.42 4.18
2481 2646 4.441415 CGCGAATGACTTATTCACCTAGAC 59.559 45.833 0.00 0.00 44.42 2.59
2482 2647 4.097437 ACGCGAATGACTTATTCACCTAGA 59.903 41.667 15.93 0.00 44.42 2.43
2483 2648 4.360563 ACGCGAATGACTTATTCACCTAG 58.639 43.478 15.93 0.00 44.42 3.02
2484 2649 4.380841 ACGCGAATGACTTATTCACCTA 57.619 40.909 15.93 0.00 44.42 3.08
2485 2650 3.247006 ACGCGAATGACTTATTCACCT 57.753 42.857 15.93 0.00 44.42 4.00
2486 2651 4.110482 ACTACGCGAATGACTTATTCACC 58.890 43.478 15.93 0.00 44.42 4.02
2487 2652 5.515626 AGAACTACGCGAATGACTTATTCAC 59.484 40.000 15.93 0.00 44.42 3.18
2488 2653 5.647589 AGAACTACGCGAATGACTTATTCA 58.352 37.500 15.93 0.00 44.42 2.57
2489 2654 6.360148 CCTAGAACTACGCGAATGACTTATTC 59.640 42.308 15.93 3.24 41.46 1.75
2490 2655 6.183360 ACCTAGAACTACGCGAATGACTTATT 60.183 38.462 15.93 0.00 0.00 1.40
2491 2656 5.298777 ACCTAGAACTACGCGAATGACTTAT 59.701 40.000 15.93 0.00 0.00 1.73
2492 2657 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2493 2658 3.442977 ACCTAGAACTACGCGAATGACTT 59.557 43.478 15.93 0.00 0.00 3.01
2494 2659 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2495 2660 3.417690 ACCTAGAACTACGCGAATGAC 57.582 47.619 15.93 0.66 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.