Multiple sequence alignment - TraesCS5B01G096200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G096200 chr5B 100.000 5852 0 0 1 5852 127500790 127506641 0.000000e+00 10807.0
1 TraesCS5B01G096200 chr5B 92.138 2773 150 26 863 3625 252302918 252300204 0.000000e+00 3851.0
2 TraesCS5B01G096200 chr5B 95.913 783 22 4 2843 3625 704278578 704277806 0.000000e+00 1260.0
3 TraesCS5B01G096200 chr5B 92.245 735 25 3 1260 1993 704279303 704278600 0.000000e+00 1013.0
4 TraesCS5B01G096200 chr5B 96.241 266 10 0 1 266 44771059 44771324 2.500000e-118 436.0
5 TraesCS5B01G096200 chr5B 94.361 266 15 0 1 266 478698879 478699144 5.460000e-110 409.0
6 TraesCS5B01G096200 chr5B 93.985 266 16 0 1 266 322151815 322151550 2.540000e-108 403.0
7 TraesCS5B01G096200 chr5B 93.985 266 16 0 1 266 709181987 709181722 2.540000e-108 403.0
8 TraesCS5B01G096200 chr5B 90.735 313 11 3 1249 1559 678674092 678673796 9.130000e-108 401.0
9 TraesCS5B01G096200 chr5A 94.506 5060 138 44 265 5261 122953132 122958114 0.000000e+00 7675.0
10 TraesCS5B01G096200 chr5A 88.511 705 47 11 863 1559 504720520 504719842 0.000000e+00 822.0
11 TraesCS5B01G096200 chr5A 81.588 277 25 16 5594 5852 122958621 122958889 7.690000e-49 206.0
12 TraesCS5B01G096200 chr5D 95.126 4924 130 29 265 5119 115947020 115951902 0.000000e+00 7662.0
13 TraesCS5B01G096200 chr5D 96.591 88 3 0 5199 5286 115951906 115951993 4.730000e-31 147.0
14 TraesCS5B01G096200 chr5D 94.444 72 0 1 5435 5502 115952154 115952225 2.230000e-19 108.0
15 TraesCS5B01G096200 chr5D 100.000 46 0 0 5538 5583 115952228 115952273 1.040000e-12 86.1
16 TraesCS5B01G096200 chr4A 94.462 939 49 3 2055 2992 321175192 321174256 0.000000e+00 1443.0
17 TraesCS5B01G096200 chr4A 93.239 636 40 1 2990 3625 321129404 321128772 0.000000e+00 933.0
18 TraesCS5B01G096200 chr4A 92.349 562 27 1 1432 1993 321175767 321175222 0.000000e+00 785.0
19 TraesCS5B01G096200 chr4A 80.218 1011 188 8 3803 4810 721384825 721385826 0.000000e+00 749.0
20 TraesCS5B01G096200 chr4A 90.328 579 37 11 865 1435 321184646 321184079 0.000000e+00 741.0
21 TraesCS5B01G096200 chr1B 93.811 921 40 2 1073 1993 332154903 332154000 0.000000e+00 1369.0
22 TraesCS5B01G096200 chr1B 95.147 783 35 3 2843 3625 332153978 332153199 0.000000e+00 1232.0
23 TraesCS5B01G096200 chr1B 90.625 736 35 18 1260 1993 169942250 169941547 0.000000e+00 946.0
24 TraesCS5B01G096200 chr1B 94.754 610 22 5 2296 2897 122923476 122922869 0.000000e+00 941.0
25 TraesCS5B01G096200 chr1B 96.275 510 13 2 3116 3625 169941321 169940818 0.000000e+00 832.0
26 TraesCS5B01G096200 chr1B 89.727 477 32 11 863 1333 122924320 122923855 1.400000e-165 593.0
27 TraesCS5B01G096200 chr1B 95.327 214 7 3 2843 3056 169941525 169941315 2.610000e-88 337.0
28 TraesCS5B01G096200 chr1A 90.631 1046 64 13 863 1902 483640780 483641797 0.000000e+00 1358.0
29 TraesCS5B01G096200 chr4B 95.658 783 25 3 2843 3625 564198136 564197363 0.000000e+00 1249.0
30 TraesCS5B01G096200 chr4B 95.402 783 27 3 2843 3625 175549171 175548398 0.000000e+00 1238.0
31 TraesCS5B01G096200 chr4B 92.371 734 26 2 1260 1993 175549896 175549193 0.000000e+00 1018.0
32 TraesCS5B01G096200 chr4B 92.098 734 28 2 1260 1993 564198861 564198158 0.000000e+00 1007.0
33 TraesCS5B01G096200 chr7B 93.311 598 33 3 2296 2887 623471067 623470471 0.000000e+00 876.0
34 TraesCS5B01G096200 chr7B 79.278 1081 192 27 3742 4809 451354362 451355423 0.000000e+00 726.0
35 TraesCS5B01G096200 chr7B 89.353 479 32 12 863 1333 623268441 623267974 8.450000e-163 584.0
36 TraesCS5B01G096200 chr7B 95.385 260 11 1 2296 2555 623266263 623266005 4.220000e-111 412.0
37 TraesCS5B01G096200 chr7B 93.985 266 16 0 1 266 116522828 116523093 2.540000e-108 403.0
38 TraesCS5B01G096200 chr7B 91.579 285 20 3 1 285 15508434 15508714 1.980000e-104 390.0
39 TraesCS5B01G096200 chr7B 75.701 535 112 16 2166 2691 451352908 451353433 9.730000e-63 252.0
40 TraesCS5B01G096200 chr7A 79.249 1118 198 30 3706 4809 484595862 484596959 0.000000e+00 749.0
41 TraesCS5B01G096200 chr7A 79.010 1010 202 6 3803 4810 14190524 14189523 0.000000e+00 682.0
42 TraesCS5B01G096200 chr7A 88.554 166 17 2 3764 3929 474812322 474812485 3.580000e-47 200.0
43 TraesCS5B01G096200 chr7D 79.070 1118 200 29 3706 4809 434148763 434149860 0.000000e+00 737.0
44 TraesCS5B01G096200 chr7D 79.307 1010 199 7 3803 4810 14881448 14880447 0.000000e+00 699.0
45 TraesCS5B01G096200 chr7D 72.123 843 204 27 3892 4720 366451927 366452752 5.900000e-55 226.0
46 TraesCS5B01G096200 chr3B 95.113 266 13 0 1 266 369098361 369098096 2.520000e-113 420.0
47 TraesCS5B01G096200 chr3B 94.737 266 14 0 1 266 344956665 344956400 1.170000e-111 414.0
48 TraesCS5B01G096200 chr2B 94.361 266 14 1 1 266 789530205 789529941 1.960000e-109 407.0
49 TraesCS5B01G096200 chr2B 76.724 232 46 8 2347 2574 798320542 798320315 7.960000e-24 122.0
50 TraesCS5B01G096200 chr2A 80.117 171 28 6 2407 2574 765039944 765040111 7.960000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G096200 chr5B 127500790 127506641 5851 False 10807.000 10807 100.000000 1 5852 1 chr5B.!!$F2 5851
1 TraesCS5B01G096200 chr5B 252300204 252302918 2714 True 3851.000 3851 92.138000 863 3625 1 chr5B.!!$R1 2762
2 TraesCS5B01G096200 chr5B 704277806 704279303 1497 True 1136.500 1260 94.079000 1260 3625 2 chr5B.!!$R5 2365
3 TraesCS5B01G096200 chr5A 122953132 122958889 5757 False 3940.500 7675 88.047000 265 5852 2 chr5A.!!$F1 5587
4 TraesCS5B01G096200 chr5A 504719842 504720520 678 True 822.000 822 88.511000 863 1559 1 chr5A.!!$R1 696
5 TraesCS5B01G096200 chr5D 115947020 115952273 5253 False 2000.775 7662 96.540250 265 5583 4 chr5D.!!$F1 5318
6 TraesCS5B01G096200 chr4A 321174256 321175767 1511 True 1114.000 1443 93.405500 1432 2992 2 chr4A.!!$R3 1560
7 TraesCS5B01G096200 chr4A 321128772 321129404 632 True 933.000 933 93.239000 2990 3625 1 chr4A.!!$R1 635
8 TraesCS5B01G096200 chr4A 721384825 721385826 1001 False 749.000 749 80.218000 3803 4810 1 chr4A.!!$F1 1007
9 TraesCS5B01G096200 chr4A 321184079 321184646 567 True 741.000 741 90.328000 865 1435 1 chr4A.!!$R2 570
10 TraesCS5B01G096200 chr1B 332153199 332154903 1704 True 1300.500 1369 94.479000 1073 3625 2 chr1B.!!$R3 2552
11 TraesCS5B01G096200 chr1B 122922869 122924320 1451 True 767.000 941 92.240500 863 2897 2 chr1B.!!$R1 2034
12 TraesCS5B01G096200 chr1B 169940818 169942250 1432 True 705.000 946 94.075667 1260 3625 3 chr1B.!!$R2 2365
13 TraesCS5B01G096200 chr1A 483640780 483641797 1017 False 1358.000 1358 90.631000 863 1902 1 chr1A.!!$F1 1039
14 TraesCS5B01G096200 chr4B 175548398 175549896 1498 True 1128.000 1238 93.886500 1260 3625 2 chr4B.!!$R1 2365
15 TraesCS5B01G096200 chr4B 564197363 564198861 1498 True 1128.000 1249 93.878000 1260 3625 2 chr4B.!!$R2 2365
16 TraesCS5B01G096200 chr7B 623470471 623471067 596 True 876.000 876 93.311000 2296 2887 1 chr7B.!!$R1 591
17 TraesCS5B01G096200 chr7B 623266005 623268441 2436 True 498.000 584 92.369000 863 2555 2 chr7B.!!$R2 1692
18 TraesCS5B01G096200 chr7B 451352908 451355423 2515 False 489.000 726 77.489500 2166 4809 2 chr7B.!!$F3 2643
19 TraesCS5B01G096200 chr7A 484595862 484596959 1097 False 749.000 749 79.249000 3706 4809 1 chr7A.!!$F2 1103
20 TraesCS5B01G096200 chr7A 14189523 14190524 1001 True 682.000 682 79.010000 3803 4810 1 chr7A.!!$R1 1007
21 TraesCS5B01G096200 chr7D 434148763 434149860 1097 False 737.000 737 79.070000 3706 4809 1 chr7D.!!$F2 1103
22 TraesCS5B01G096200 chr7D 14880447 14881448 1001 True 699.000 699 79.307000 3803 4810 1 chr7D.!!$R1 1007
23 TraesCS5B01G096200 chr7D 366451927 366452752 825 False 226.000 226 72.123000 3892 4720 1 chr7D.!!$F1 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.106894 GGTTCGGATAGGGAAGCAGG 59.893 60.000 0.00 0.00 40.59 4.85 F
878 915 0.109723 TCCGACCACCCTTCCTTTTG 59.890 55.000 0.00 0.00 0.00 2.44 F
2003 2662 0.800631 TACAGGTACACTCGCACTCG 59.199 55.000 0.00 0.00 0.00 4.18 F
2008 2667 1.066114 GTACACTCGCACTCGCACTC 61.066 60.000 0.00 0.00 38.40 3.51 F
2025 2684 1.282248 CTCGCGCGTTCTTCCTGAAA 61.282 55.000 30.98 4.24 36.30 2.69 F
2640 4036 1.898574 CAAGGTGCGGCTGGACTTT 60.899 57.895 17.35 13.12 36.15 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2008 2667 0.041663 TTTTTCAGGAAGAACGCGCG 60.042 50.000 30.96 30.96 35.56 6.86 R
2009 2668 3.837669 TTTTTCAGGAAGAACGCGC 57.162 47.368 5.73 0.00 35.56 6.86 R
3606 5026 1.896465 CTCTCCCTGTCCGTCTTCTTT 59.104 52.381 0.00 0.00 0.00 2.52 R
4503 5933 2.126031 GCGAACGTGTCCTCCTCC 60.126 66.667 0.00 0.00 0.00 4.30 R
4833 6263 1.207089 CACTACGGGAAGCTGAATCCA 59.793 52.381 5.31 0.00 38.80 3.41 R
5316 6801 1.081242 CACCGCAGTGTGCCAAATC 60.081 57.895 0.00 0.00 41.12 2.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
24 25 7.750229 ATATGACGTAAAGTAGGTTCGGATA 57.250 36.000 0.00 0.00 0.00 2.59
25 26 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
26 27 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
27 28 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
28 29 3.885297 CGTAAAGTAGGTTCGGATAGGGA 59.115 47.826 0.00 0.00 0.00 4.20
29 30 4.339247 CGTAAAGTAGGTTCGGATAGGGAA 59.661 45.833 0.00 0.00 0.00 3.97
30 31 5.506982 CGTAAAGTAGGTTCGGATAGGGAAG 60.507 48.000 0.00 0.00 0.00 3.46
31 32 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
32 33 2.037144 GTAGGTTCGGATAGGGAAGCA 58.963 52.381 6.51 0.00 42.68 3.91
33 34 1.123928 AGGTTCGGATAGGGAAGCAG 58.876 55.000 6.51 0.00 42.68 4.24
34 35 0.106894 GGTTCGGATAGGGAAGCAGG 59.893 60.000 0.00 0.00 40.59 4.85
35 36 1.120530 GTTCGGATAGGGAAGCAGGA 58.879 55.000 0.00 0.00 0.00 3.86
36 37 1.694696 GTTCGGATAGGGAAGCAGGAT 59.305 52.381 0.00 0.00 0.00 3.24
37 38 1.633774 TCGGATAGGGAAGCAGGATC 58.366 55.000 0.00 0.00 0.00 3.36
38 39 0.610687 CGGATAGGGAAGCAGGATCC 59.389 60.000 2.48 2.48 36.16 3.36
39 40 1.829261 CGGATAGGGAAGCAGGATCCT 60.829 57.143 9.02 9.02 37.14 3.24
40 41 1.905894 GGATAGGGAAGCAGGATCCTC 59.094 57.143 12.69 7.20 37.14 3.71
41 42 2.494439 GGATAGGGAAGCAGGATCCTCT 60.494 54.545 12.69 9.57 37.14 3.69
42 43 2.390225 TAGGGAAGCAGGATCCTCTC 57.610 55.000 12.69 8.84 37.14 3.20
43 44 0.399806 AGGGAAGCAGGATCCTCTCC 60.400 60.000 12.69 17.26 45.33 3.71
55 56 3.465403 CTCTCCAGGAGGCGGGTG 61.465 72.222 17.10 0.00 38.35 4.61
56 57 3.965026 CTCTCCAGGAGGCGGGTGA 62.965 68.421 17.10 0.00 38.35 4.02
57 58 2.765807 CTCCAGGAGGCGGGTGAT 60.766 66.667 8.88 0.00 33.74 3.06
58 59 2.285368 TCCAGGAGGCGGGTGATT 60.285 61.111 0.00 0.00 33.74 2.57
59 60 2.124570 CCAGGAGGCGGGTGATTG 60.125 66.667 0.00 0.00 0.00 2.67
60 61 2.669133 CCAGGAGGCGGGTGATTGA 61.669 63.158 0.00 0.00 0.00 2.57
61 62 1.299648 CAGGAGGCGGGTGATTGAA 59.700 57.895 0.00 0.00 0.00 2.69
62 63 0.745845 CAGGAGGCGGGTGATTGAAG 60.746 60.000 0.00 0.00 0.00 3.02
63 64 0.909610 AGGAGGCGGGTGATTGAAGA 60.910 55.000 0.00 0.00 0.00 2.87
64 65 0.462759 GGAGGCGGGTGATTGAAGAG 60.463 60.000 0.00 0.00 0.00 2.85
65 66 0.537188 GAGGCGGGTGATTGAAGAGA 59.463 55.000 0.00 0.00 0.00 3.10
66 67 0.984230 AGGCGGGTGATTGAAGAGAA 59.016 50.000 0.00 0.00 0.00 2.87
67 68 1.351017 AGGCGGGTGATTGAAGAGAAA 59.649 47.619 0.00 0.00 0.00 2.52
68 69 2.159382 GGCGGGTGATTGAAGAGAAAA 58.841 47.619 0.00 0.00 0.00 2.29
69 70 2.556622 GGCGGGTGATTGAAGAGAAAAA 59.443 45.455 0.00 0.00 0.00 1.94
90 91 4.361451 AACATGATCCGATGACAAAAGC 57.639 40.909 0.00 0.00 0.00 3.51
91 92 3.614092 ACATGATCCGATGACAAAAGCT 58.386 40.909 0.00 0.00 0.00 3.74
92 93 3.376234 ACATGATCCGATGACAAAAGCTG 59.624 43.478 0.00 0.00 0.00 4.24
93 94 3.333029 TGATCCGATGACAAAAGCTGA 57.667 42.857 0.00 0.00 0.00 4.26
94 95 3.673902 TGATCCGATGACAAAAGCTGAA 58.326 40.909 0.00 0.00 0.00 3.02
95 96 4.071423 TGATCCGATGACAAAAGCTGAAA 58.929 39.130 0.00 0.00 0.00 2.69
96 97 4.518590 TGATCCGATGACAAAAGCTGAAAA 59.481 37.500 0.00 0.00 0.00 2.29
97 98 4.488126 TCCGATGACAAAAGCTGAAAAG 57.512 40.909 0.00 0.00 0.00 2.27
98 99 4.133820 TCCGATGACAAAAGCTGAAAAGA 58.866 39.130 0.00 0.00 0.00 2.52
99 100 4.761739 TCCGATGACAAAAGCTGAAAAGAT 59.238 37.500 0.00 0.00 0.00 2.40
100 101 5.241506 TCCGATGACAAAAGCTGAAAAGATT 59.758 36.000 0.00 0.00 0.00 2.40
101 102 5.344128 CCGATGACAAAAGCTGAAAAGATTG 59.656 40.000 0.00 0.00 0.00 2.67
102 103 5.344128 CGATGACAAAAGCTGAAAAGATTGG 59.656 40.000 0.00 0.00 0.00 3.16
103 104 5.850557 TGACAAAAGCTGAAAAGATTGGA 57.149 34.783 0.00 0.00 0.00 3.53
104 105 5.835257 TGACAAAAGCTGAAAAGATTGGAG 58.165 37.500 0.00 0.00 0.00 3.86
105 106 5.360714 TGACAAAAGCTGAAAAGATTGGAGT 59.639 36.000 0.00 0.00 0.00 3.85
106 107 5.594926 ACAAAAGCTGAAAAGATTGGAGTG 58.405 37.500 0.00 0.00 0.00 3.51
107 108 5.360714 ACAAAAGCTGAAAAGATTGGAGTGA 59.639 36.000 0.00 0.00 0.00 3.41
108 109 6.127366 ACAAAAGCTGAAAAGATTGGAGTGAA 60.127 34.615 0.00 0.00 0.00 3.18
109 110 6.469782 AAAGCTGAAAAGATTGGAGTGAAA 57.530 33.333 0.00 0.00 0.00 2.69
110 111 6.469782 AAGCTGAAAAGATTGGAGTGAAAA 57.530 33.333 0.00 0.00 0.00 2.29
111 112 6.081872 AGCTGAAAAGATTGGAGTGAAAAG 57.918 37.500 0.00 0.00 0.00 2.27
112 113 5.595952 AGCTGAAAAGATTGGAGTGAAAAGT 59.404 36.000 0.00 0.00 0.00 2.66
113 114 6.772716 AGCTGAAAAGATTGGAGTGAAAAGTA 59.227 34.615 0.00 0.00 0.00 2.24
114 115 7.040823 AGCTGAAAAGATTGGAGTGAAAAGTAG 60.041 37.037 0.00 0.00 0.00 2.57
115 116 7.041098 GCTGAAAAGATTGGAGTGAAAAGTAGA 60.041 37.037 0.00 0.00 0.00 2.59
116 117 8.383318 TGAAAAGATTGGAGTGAAAAGTAGAG 57.617 34.615 0.00 0.00 0.00 2.43
117 118 8.210946 TGAAAAGATTGGAGTGAAAAGTAGAGA 58.789 33.333 0.00 0.00 0.00 3.10
118 119 9.225436 GAAAAGATTGGAGTGAAAAGTAGAGAT 57.775 33.333 0.00 0.00 0.00 2.75
119 120 8.558973 AAAGATTGGAGTGAAAAGTAGAGATG 57.441 34.615 0.00 0.00 0.00 2.90
120 121 6.112058 AGATTGGAGTGAAAAGTAGAGATGC 58.888 40.000 0.00 0.00 0.00 3.91
121 122 4.890158 TGGAGTGAAAAGTAGAGATGCA 57.110 40.909 0.00 0.00 0.00 3.96
122 123 5.426689 TGGAGTGAAAAGTAGAGATGCAT 57.573 39.130 0.00 0.00 0.00 3.96
123 124 5.181009 TGGAGTGAAAAGTAGAGATGCATG 58.819 41.667 2.46 0.00 0.00 4.06
124 125 5.181748 GGAGTGAAAAGTAGAGATGCATGT 58.818 41.667 2.46 0.00 0.00 3.21
125 126 5.064452 GGAGTGAAAAGTAGAGATGCATGTG 59.936 44.000 2.46 0.00 0.00 3.21
126 127 5.555017 AGTGAAAAGTAGAGATGCATGTGT 58.445 37.500 2.46 0.00 0.00 3.72
127 128 6.701340 AGTGAAAAGTAGAGATGCATGTGTA 58.299 36.000 2.46 0.00 0.00 2.90
128 129 6.591834 AGTGAAAAGTAGAGATGCATGTGTAC 59.408 38.462 19.88 19.88 0.00 2.90
129 130 6.591834 GTGAAAAGTAGAGATGCATGTGTACT 59.408 38.462 23.22 23.22 32.62 2.73
130 131 7.759886 GTGAAAAGTAGAGATGCATGTGTACTA 59.240 37.037 27.25 13.62 30.49 1.82
131 132 7.976175 TGAAAAGTAGAGATGCATGTGTACTAG 59.024 37.037 27.25 0.00 30.49 2.57
132 133 7.646548 AAAGTAGAGATGCATGTGTACTAGA 57.353 36.000 27.25 0.00 30.49 2.43
133 134 6.875948 AGTAGAGATGCATGTGTACTAGAG 57.124 41.667 26.28 0.00 30.07 2.43
134 135 6.361433 AGTAGAGATGCATGTGTACTAGAGT 58.639 40.000 26.28 7.72 30.07 3.24
135 136 5.766150 AGAGATGCATGTGTACTAGAGTC 57.234 43.478 2.46 0.00 0.00 3.36
136 137 5.445069 AGAGATGCATGTGTACTAGAGTCT 58.555 41.667 2.46 0.00 0.00 3.24
137 138 5.890985 AGAGATGCATGTGTACTAGAGTCTT 59.109 40.000 2.46 0.00 0.00 3.01
138 139 6.379703 AGAGATGCATGTGTACTAGAGTCTTT 59.620 38.462 2.46 0.00 0.00 2.52
139 140 7.558081 AGAGATGCATGTGTACTAGAGTCTTTA 59.442 37.037 2.46 0.00 0.00 1.85
140 141 8.243961 AGATGCATGTGTACTAGAGTCTTTAT 57.756 34.615 2.46 0.00 0.00 1.40
141 142 8.700051 AGATGCATGTGTACTAGAGTCTTTATT 58.300 33.333 2.46 0.00 0.00 1.40
142 143 9.319143 GATGCATGTGTACTAGAGTCTTTATTT 57.681 33.333 2.46 0.00 0.00 1.40
143 144 9.672673 ATGCATGTGTACTAGAGTCTTTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
144 145 9.502091 TGCATGTGTACTAGAGTCTTTATTTTT 57.498 29.630 0.00 0.00 0.00 1.94
168 169 9.474313 TTTTATTTCTTAATGATGCCCACTAGT 57.526 29.630 0.00 0.00 0.00 2.57
169 170 6.949352 ATTTCTTAATGATGCCCACTAGTG 57.051 37.500 16.34 16.34 0.00 2.74
170 171 5.692115 TTCTTAATGATGCCCACTAGTGA 57.308 39.130 24.68 4.71 0.00 3.41
171 172 5.894298 TCTTAATGATGCCCACTAGTGAT 57.106 39.130 24.68 9.85 0.00 3.06
172 173 6.994421 TCTTAATGATGCCCACTAGTGATA 57.006 37.500 24.68 10.00 0.00 2.15
173 174 6.997655 TCTTAATGATGCCCACTAGTGATAG 58.002 40.000 24.68 13.03 0.00 2.08
174 175 3.692257 ATGATGCCCACTAGTGATAGC 57.308 47.619 24.68 21.61 0.00 2.97
175 176 2.682594 TGATGCCCACTAGTGATAGCT 58.317 47.619 24.68 12.57 0.00 3.32
176 177 3.041211 TGATGCCCACTAGTGATAGCTT 58.959 45.455 24.68 19.23 0.00 3.74
177 178 2.988010 TGCCCACTAGTGATAGCTTG 57.012 50.000 24.68 5.29 0.00 4.01
178 179 1.134401 TGCCCACTAGTGATAGCTTGC 60.134 52.381 24.68 13.68 0.00 4.01
179 180 1.134401 GCCCACTAGTGATAGCTTGCA 60.134 52.381 24.68 0.00 0.00 4.08
180 181 2.486191 GCCCACTAGTGATAGCTTGCAT 60.486 50.000 24.68 0.00 0.00 3.96
181 182 3.813443 CCCACTAGTGATAGCTTGCATT 58.187 45.455 24.68 0.00 0.00 3.56
182 183 3.562973 CCCACTAGTGATAGCTTGCATTG 59.437 47.826 24.68 2.35 0.00 2.82
183 184 3.562973 CCACTAGTGATAGCTTGCATTGG 59.437 47.826 24.68 0.00 0.00 3.16
184 185 4.445453 CACTAGTGATAGCTTGCATTGGA 58.555 43.478 18.45 0.00 0.00 3.53
185 186 4.510711 CACTAGTGATAGCTTGCATTGGAG 59.489 45.833 18.45 0.00 0.00 3.86
186 187 3.920231 AGTGATAGCTTGCATTGGAGA 57.080 42.857 0.00 0.00 0.00 3.71
187 188 3.806380 AGTGATAGCTTGCATTGGAGAG 58.194 45.455 0.00 0.00 0.00 3.20
188 189 2.877168 GTGATAGCTTGCATTGGAGAGG 59.123 50.000 0.00 0.00 0.00 3.69
189 190 2.773661 TGATAGCTTGCATTGGAGAGGA 59.226 45.455 0.00 0.00 0.00 3.71
190 191 3.200605 TGATAGCTTGCATTGGAGAGGAA 59.799 43.478 0.00 0.00 0.00 3.36
191 192 2.592102 AGCTTGCATTGGAGAGGAAA 57.408 45.000 0.00 0.00 0.00 3.13
192 193 2.880443 AGCTTGCATTGGAGAGGAAAA 58.120 42.857 0.00 0.00 0.00 2.29
193 194 3.233507 AGCTTGCATTGGAGAGGAAAAA 58.766 40.909 0.00 0.00 0.00 1.94
194 195 3.836562 AGCTTGCATTGGAGAGGAAAAAT 59.163 39.130 0.00 0.00 0.00 1.82
195 196 4.285260 AGCTTGCATTGGAGAGGAAAAATT 59.715 37.500 0.00 0.00 0.00 1.82
196 197 5.481473 AGCTTGCATTGGAGAGGAAAAATTA 59.519 36.000 0.00 0.00 0.00 1.40
197 198 6.014327 AGCTTGCATTGGAGAGGAAAAATTAA 60.014 34.615 0.00 0.00 0.00 1.40
198 199 6.820152 GCTTGCATTGGAGAGGAAAAATTAAT 59.180 34.615 0.00 0.00 0.00 1.40
199 200 7.201582 GCTTGCATTGGAGAGGAAAAATTAATG 60.202 37.037 0.00 0.00 0.00 1.90
200 201 7.243604 TGCATTGGAGAGGAAAAATTAATGT 57.756 32.000 0.00 0.00 0.00 2.71
201 202 8.359875 TGCATTGGAGAGGAAAAATTAATGTA 57.640 30.769 0.00 0.00 0.00 2.29
202 203 8.469200 TGCATTGGAGAGGAAAAATTAATGTAG 58.531 33.333 0.00 0.00 0.00 2.74
203 204 8.686334 GCATTGGAGAGGAAAAATTAATGTAGA 58.314 33.333 0.00 0.00 0.00 2.59
206 207 9.753674 TTGGAGAGGAAAAATTAATGTAGATGT 57.246 29.630 0.00 0.00 0.00 3.06
207 208 9.753674 TGGAGAGGAAAAATTAATGTAGATGTT 57.246 29.630 0.00 0.00 0.00 2.71
229 230 8.430801 TGTTTCAAATTACTTTTTGTCATGGG 57.569 30.769 0.00 0.00 37.73 4.00
230 231 8.260818 TGTTTCAAATTACTTTTTGTCATGGGA 58.739 29.630 0.00 0.00 37.73 4.37
231 232 8.547894 GTTTCAAATTACTTTTTGTCATGGGAC 58.452 33.333 0.00 0.00 44.57 4.46
250 251 7.078249 TGGGACATATATATCCATATGCCAC 57.922 40.000 12.12 5.03 40.91 5.01
251 252 6.044287 TGGGACATATATATCCATATGCCACC 59.956 42.308 12.12 10.71 40.91 4.61
252 253 6.044287 GGGACATATATATCCATATGCCACCA 59.956 42.308 12.12 0.00 40.91 4.17
253 254 7.257162 GGGACATATATATCCATATGCCACCAT 60.257 40.741 12.12 0.00 40.91 3.55
254 255 8.166061 GGACATATATATCCATATGCCACCATT 58.834 37.037 5.09 0.00 40.91 3.16
255 256 8.929260 ACATATATATCCATATGCCACCATTG 57.071 34.615 0.00 0.00 40.91 2.82
256 257 8.505246 ACATATATATCCATATGCCACCATTGT 58.495 33.333 0.00 0.00 40.91 2.71
259 260 3.941704 TCCATATGCCACCATTGTACA 57.058 42.857 0.00 0.00 32.85 2.90
260 261 4.451891 TCCATATGCCACCATTGTACAT 57.548 40.909 0.00 0.00 32.85 2.29
261 262 4.143543 TCCATATGCCACCATTGTACATG 58.856 43.478 0.00 0.00 32.85 3.21
262 263 3.305539 CCATATGCCACCATTGTACATGC 60.306 47.826 0.00 0.00 32.85 4.06
263 264 1.113788 ATGCCACCATTGTACATGCC 58.886 50.000 0.00 0.00 0.00 4.40
264 265 0.969917 TGCCACCATTGTACATGCCC 60.970 55.000 0.00 0.00 0.00 5.36
265 266 0.684153 GCCACCATTGTACATGCCCT 60.684 55.000 0.00 0.00 0.00 5.19
266 267 1.105457 CCACCATTGTACATGCCCTG 58.895 55.000 0.00 0.00 0.00 4.45
279 280 0.682292 TGCCCTGACACACAACGATA 59.318 50.000 0.00 0.00 0.00 2.92
305 306 0.460722 TATGGCCAACATGCACATGC 59.539 50.000 10.96 0.00 42.39 4.06
315 316 1.016627 ATGCACATGCGACATGTACC 58.983 50.000 20.06 15.50 45.83 3.34
316 317 1.348250 GCACATGCGACATGTACCG 59.652 57.895 20.06 0.00 0.00 4.02
336 337 1.347707 GCCCCGGTAGATCAATGATGA 59.652 52.381 0.00 0.00 40.57 2.92
338 339 3.197766 GCCCCGGTAGATCAATGATGATA 59.802 47.826 0.00 0.00 46.30 2.15
339 340 4.759782 CCCCGGTAGATCAATGATGATAC 58.240 47.826 0.00 3.72 46.30 2.24
386 387 2.905996 GCACCAGTGGACCCCATCA 61.906 63.158 18.40 0.00 35.28 3.07
394 395 1.492176 GTGGACCCCATCACATCTCAT 59.508 52.381 0.00 0.00 35.28 2.90
399 400 4.385199 GGACCCCATCACATCTCATGTAAA 60.385 45.833 0.00 0.00 42.70 2.01
468 483 2.673368 CCGTCGAAGGAAAGAAATGGAG 59.327 50.000 12.53 0.00 0.00 3.86
620 638 3.147595 CCTCAGCCGTCCGATCCA 61.148 66.667 0.00 0.00 0.00 3.41
831 861 2.191400 CTCAATCCTTCCTCTCCACCA 58.809 52.381 0.00 0.00 0.00 4.17
850 886 1.352352 CACCCCACCTTCACAGATCTT 59.648 52.381 0.00 0.00 0.00 2.40
860 896 7.041508 CCACCTTCACAGATCTTGCTATAATTC 60.042 40.741 0.00 0.00 0.00 2.17
872 908 3.181458 TGCTATAATTCCGACCACCCTTC 60.181 47.826 0.00 0.00 0.00 3.46
878 915 0.109723 TCCGACCACCCTTCCTTTTG 59.890 55.000 0.00 0.00 0.00 2.44
881 918 0.961753 GACCACCCTTCCTTTTGCTG 59.038 55.000 0.00 0.00 0.00 4.41
979 1034 0.914644 TCTGCTGATTTGGAGGAGGG 59.085 55.000 0.00 0.00 30.23 4.30
988 1043 2.365768 GGAGGAGGGGGAGGTGAC 60.366 72.222 0.00 0.00 0.00 3.67
1993 2652 1.007842 TCCTCAGCCCATACAGGTACA 59.992 52.381 0.00 0.00 34.66 2.90
1994 2653 1.139058 CCTCAGCCCATACAGGTACAC 59.861 57.143 0.00 0.00 34.66 2.90
1995 2654 2.111384 CTCAGCCCATACAGGTACACT 58.889 52.381 0.00 0.00 34.66 3.55
1997 2656 1.112113 AGCCCATACAGGTACACTCG 58.888 55.000 0.00 0.00 34.66 4.18
1999 2658 0.821517 CCCATACAGGTACACTCGCA 59.178 55.000 0.00 0.00 34.66 5.10
2000 2659 1.470979 CCCATACAGGTACACTCGCAC 60.471 57.143 0.00 0.00 34.66 5.34
2003 2662 0.800631 TACAGGTACACTCGCACTCG 59.199 55.000 0.00 0.00 0.00 4.18
2004 2663 1.801913 CAGGTACACTCGCACTCGC 60.802 63.158 0.00 0.00 35.26 5.03
2006 2665 2.087009 GGTACACTCGCACTCGCAC 61.087 63.158 0.00 0.00 38.40 5.34
2007 2666 1.081376 GTACACTCGCACTCGCACT 60.081 57.895 0.00 0.00 38.40 4.40
2008 2667 1.066114 GTACACTCGCACTCGCACTC 61.066 60.000 0.00 0.00 38.40 3.51
2009 2668 2.508755 TACACTCGCACTCGCACTCG 62.509 60.000 0.00 0.00 38.40 4.18
2021 2680 2.430921 CACTCGCGCGTTCTTCCT 60.431 61.111 30.98 2.22 0.00 3.36
2022 2681 2.430921 ACTCGCGCGTTCTTCCTG 60.431 61.111 30.98 12.44 0.00 3.86
2023 2682 2.126463 CTCGCGCGTTCTTCCTGA 60.126 61.111 30.98 5.69 0.00 3.86
2025 2684 1.282248 CTCGCGCGTTCTTCCTGAAA 61.282 55.000 30.98 4.24 36.30 2.69
2640 4036 1.898574 CAAGGTGCGGCTGGACTTT 60.899 57.895 17.35 13.12 36.15 2.66
3132 4549 2.504026 GCGCTGATCGACACGACA 60.504 61.111 0.00 0.00 39.18 4.35
4833 6263 4.123545 GCCAGGCCGGGTATTGGT 62.124 66.667 23.81 0.00 33.21 3.67
4836 6266 2.285818 AGGCCGGGTATTGGTGGA 60.286 61.111 2.18 0.00 0.00 4.02
4856 6286 1.053424 TTCAGCTTCCCGTAGTGGTT 58.947 50.000 0.00 0.00 35.15 3.67
4858 6288 0.673644 CAGCTTCCCGTAGTGGTTGG 60.674 60.000 0.00 0.00 35.15 3.77
4859 6289 2.038837 GCTTCCCGTAGTGGTTGGC 61.039 63.158 0.00 0.00 35.15 4.52
4860 6290 1.373435 CTTCCCGTAGTGGTTGGCA 59.627 57.895 0.00 0.00 35.15 4.92
4861 6291 0.673644 CTTCCCGTAGTGGTTGGCAG 60.674 60.000 0.00 0.00 35.15 4.85
4863 6293 1.072505 CCCGTAGTGGTTGGCAGTT 59.927 57.895 0.00 0.00 35.15 3.16
4864 6294 0.322322 CCCGTAGTGGTTGGCAGTTA 59.678 55.000 0.00 0.00 35.15 2.24
4866 6296 1.435577 CGTAGTGGTTGGCAGTTACC 58.564 55.000 0.00 0.00 34.93 2.85
4867 6297 1.270412 CGTAGTGGTTGGCAGTTACCA 60.270 52.381 5.43 5.43 41.97 3.25
5134 6564 4.829064 TCAGTTATTGTTGAACCAGTGC 57.171 40.909 0.00 0.00 0.00 4.40
5135 6565 4.203226 TCAGTTATTGTTGAACCAGTGCA 58.797 39.130 0.00 0.00 0.00 4.57
5136 6566 4.275689 TCAGTTATTGTTGAACCAGTGCAG 59.724 41.667 0.00 0.00 0.00 4.41
5137 6567 4.036734 CAGTTATTGTTGAACCAGTGCAGT 59.963 41.667 0.00 0.00 0.00 4.40
5138 6568 4.644685 AGTTATTGTTGAACCAGTGCAGTT 59.355 37.500 0.00 0.00 0.00 3.16
5139 6569 5.127031 AGTTATTGTTGAACCAGTGCAGTTT 59.873 36.000 0.00 0.00 0.00 2.66
5140 6570 6.320164 AGTTATTGTTGAACCAGTGCAGTTTA 59.680 34.615 0.00 0.00 0.00 2.01
5141 6571 5.789643 ATTGTTGAACCAGTGCAGTTTAT 57.210 34.783 0.00 0.00 0.00 1.40
5142 6572 4.829064 TGTTGAACCAGTGCAGTTTATC 57.171 40.909 0.00 0.00 0.00 1.75
5143 6573 4.460263 TGTTGAACCAGTGCAGTTTATCT 58.540 39.130 0.00 0.00 0.00 1.98
5144 6574 4.275689 TGTTGAACCAGTGCAGTTTATCTG 59.724 41.667 0.00 0.00 46.12 2.90
5169 6599 5.065090 CACTGTCAACTCTTGTCACATTTCA 59.935 40.000 0.00 0.00 0.00 2.69
5170 6600 5.824624 ACTGTCAACTCTTGTCACATTTCAT 59.175 36.000 0.00 0.00 0.00 2.57
5171 6601 6.063640 TGTCAACTCTTGTCACATTTCATG 57.936 37.500 0.00 0.00 0.00 3.07
5172 6602 5.821995 TGTCAACTCTTGTCACATTTCATGA 59.178 36.000 0.00 0.00 0.00 3.07
5173 6603 6.318396 TGTCAACTCTTGTCACATTTCATGAA 59.682 34.615 3.38 3.38 0.00 2.57
5174 6604 6.634436 GTCAACTCTTGTCACATTTCATGAAC 59.366 38.462 7.89 0.00 0.00 3.18
5175 6605 6.543465 TCAACTCTTGTCACATTTCATGAACT 59.457 34.615 7.89 0.00 0.00 3.01
5176 6606 6.949352 ACTCTTGTCACATTTCATGAACTT 57.051 33.333 7.89 0.00 0.00 2.66
5177 6607 7.338800 ACTCTTGTCACATTTCATGAACTTT 57.661 32.000 7.89 0.00 0.00 2.66
5247 6680 2.743664 TGATTCAGAGCCATTGTGAACG 59.256 45.455 0.00 0.00 41.31 3.95
5295 6780 1.279271 GTAGGATGTGAGCAACCCTGT 59.721 52.381 0.00 0.00 38.20 4.00
5315 6800 5.471797 CCTGTGGTGTATACAAACAATGTCA 59.528 40.000 18.36 10.07 42.70 3.58
5316 6801 6.348458 CCTGTGGTGTATACAAACAATGTCAG 60.348 42.308 18.36 16.05 42.70 3.51
5377 6868 7.025963 CAGAATCTGTTCTAAAACAAGGATGC 58.974 38.462 1.31 0.00 44.53 3.91
5409 6900 7.753132 GTCACAAAACCAAATTGCTCGAATATA 59.247 33.333 0.00 0.00 0.00 0.86
5410 6901 7.753132 TCACAAAACCAAATTGCTCGAATATAC 59.247 33.333 0.00 0.00 0.00 1.47
5411 6902 7.009174 CACAAAACCAAATTGCTCGAATATACC 59.991 37.037 0.00 0.00 0.00 2.73
5414 6905 5.680619 ACCAAATTGCTCGAATATACCTCA 58.319 37.500 0.00 0.00 0.00 3.86
5415 6906 6.119536 ACCAAATTGCTCGAATATACCTCAA 58.880 36.000 0.00 0.00 0.00 3.02
5416 6907 6.601613 ACCAAATTGCTCGAATATACCTCAAA 59.398 34.615 0.00 0.00 0.00 2.69
5422 6913 8.725405 TTGCTCGAATATACCTCAAAATACAA 57.275 30.769 0.00 0.00 0.00 2.41
5423 6914 8.365399 TGCTCGAATATACCTCAAAATACAAG 57.635 34.615 0.00 0.00 0.00 3.16
5424 6915 7.042051 TGCTCGAATATACCTCAAAATACAAGC 60.042 37.037 0.00 0.00 0.00 4.01
5425 6916 7.042051 GCTCGAATATACCTCAAAATACAAGCA 60.042 37.037 0.00 0.00 0.00 3.91
5426 6917 8.902540 TCGAATATACCTCAAAATACAAGCAT 57.097 30.769 0.00 0.00 0.00 3.79
5427 6918 9.990360 TCGAATATACCTCAAAATACAAGCATA 57.010 29.630 0.00 0.00 0.00 3.14
5505 7000 9.669353 CACTCATATACCTCAAACAATTTATGC 57.331 33.333 0.00 0.00 0.00 3.14
5506 7001 9.407380 ACTCATATACCTCAAACAATTTATGCA 57.593 29.630 0.00 0.00 0.00 3.96
5512 7007 7.258022 ACCTCAAACAATTTATGCAAAAACC 57.742 32.000 0.00 0.00 0.00 3.27
5513 7008 6.825721 ACCTCAAACAATTTATGCAAAAACCA 59.174 30.769 0.00 0.00 0.00 3.67
5514 7009 7.337942 ACCTCAAACAATTTATGCAAAAACCAA 59.662 29.630 0.00 0.00 0.00 3.67
5515 7010 8.186821 CCTCAAACAATTTATGCAAAAACCAAA 58.813 29.630 0.00 0.00 0.00 3.28
5516 7011 8.902040 TCAAACAATTTATGCAAAAACCAAAC 57.098 26.923 0.00 0.00 0.00 2.93
5517 7012 8.734386 TCAAACAATTTATGCAAAAACCAAACT 58.266 25.926 0.00 0.00 0.00 2.66
5518 7013 8.796278 CAAACAATTTATGCAAAAACCAAACTG 58.204 29.630 0.00 0.00 0.00 3.16
5519 7014 6.493978 ACAATTTATGCAAAAACCAAACTGC 58.506 32.000 0.00 0.00 35.32 4.40
5520 7015 6.318396 ACAATTTATGCAAAAACCAAACTGCT 59.682 30.769 0.00 0.00 35.78 4.24
5521 7016 5.982465 TTTATGCAAAAACCAAACTGCTC 57.018 34.783 0.00 0.00 35.78 4.26
5522 7017 3.825143 ATGCAAAAACCAAACTGCTCT 57.175 38.095 0.00 0.00 35.78 4.09
5523 7018 3.608316 TGCAAAAACCAAACTGCTCTT 57.392 38.095 0.00 0.00 35.78 2.85
5524 7019 4.727507 TGCAAAAACCAAACTGCTCTTA 57.272 36.364 0.00 0.00 35.78 2.10
5525 7020 5.078411 TGCAAAAACCAAACTGCTCTTAA 57.922 34.783 0.00 0.00 35.78 1.85
5526 7021 5.482908 TGCAAAAACCAAACTGCTCTTAAA 58.517 33.333 0.00 0.00 35.78 1.52
5527 7022 5.350091 TGCAAAAACCAAACTGCTCTTAAAC 59.650 36.000 0.00 0.00 35.78 2.01
5528 7023 5.580691 GCAAAAACCAAACTGCTCTTAAACT 59.419 36.000 0.00 0.00 0.00 2.66
5529 7024 6.455513 GCAAAAACCAAACTGCTCTTAAACTG 60.456 38.462 0.00 0.00 0.00 3.16
5530 7025 3.990318 ACCAAACTGCTCTTAAACTGC 57.010 42.857 0.00 0.00 0.00 4.40
5531 7026 3.555966 ACCAAACTGCTCTTAAACTGCT 58.444 40.909 0.00 0.00 0.00 4.24
5532 7027 3.565902 ACCAAACTGCTCTTAAACTGCTC 59.434 43.478 0.00 0.00 0.00 4.26
5536 7031 6.017109 CCAAACTGCTCTTAAACTGCTCTTAA 60.017 38.462 0.00 0.00 0.00 1.85
5583 7078 1.952990 CCATGCTGTGGTGTTGTTGTA 59.047 47.619 1.05 0.00 43.44 2.41
5584 7079 2.287547 CCATGCTGTGGTGTTGTTGTAC 60.288 50.000 1.05 0.00 43.44 2.90
5585 7080 1.384525 TGCTGTGGTGTTGTTGTACC 58.615 50.000 0.00 0.00 37.48 3.34
5586 7081 0.306533 GCTGTGGTGTTGTTGTACCG 59.693 55.000 0.00 0.00 39.87 4.02
5612 7349 1.043673 ACCTAGGAGGATGGTGCGAC 61.044 60.000 17.98 0.00 37.67 5.19
5644 7382 1.478105 GTCCTGAATGTGGGATTTGGC 59.522 52.381 0.00 0.00 33.89 4.52
5649 7387 1.404035 GAATGTGGGATTTGGCCGTAC 59.596 52.381 0.00 0.00 0.00 3.67
5650 7388 0.329931 ATGTGGGATTTGGCCGTACA 59.670 50.000 0.00 0.00 32.63 2.90
5660 7398 1.079336 GGCCGTACAGGTGACCTTC 60.079 63.158 0.00 0.00 43.70 3.46
5666 7404 0.790993 TACAGGTGACCTTCCTCCCT 59.209 55.000 0.00 0.00 32.37 4.20
5667 7405 0.104409 ACAGGTGACCTTCCTCCCTT 60.104 55.000 0.00 0.00 32.37 3.95
5693 7431 1.411089 GCGTACAACTCTTGTCGCG 59.589 57.895 0.00 0.00 43.94 5.87
5694 7432 1.941476 GCGTACAACTCTTGTCGCGG 61.941 60.000 6.13 0.00 43.94 6.46
5697 7435 0.032952 TACAACTCTTGTCGCGGCTT 59.967 50.000 13.81 0.00 44.12 4.35
5712 7450 1.718396 GGCTTGATTTTGCCTGCTTC 58.282 50.000 0.00 0.00 45.26 3.86
5746 7500 2.616960 TCTCATGTTATGACCGTGCAC 58.383 47.619 6.82 6.82 35.06 4.57
5747 7501 1.324435 CTCATGTTATGACCGTGCACG 59.676 52.381 31.77 31.77 35.06 5.34
5748 7502 1.075542 CATGTTATGACCGTGCACGT 58.924 50.000 34.81 23.67 37.74 4.49
5749 7503 2.094649 TCATGTTATGACCGTGCACGTA 60.095 45.455 34.81 22.02 34.04 3.57
5750 7504 2.658373 TGTTATGACCGTGCACGTAT 57.342 45.000 34.81 26.31 37.74 3.06
5751 7505 2.263945 TGTTATGACCGTGCACGTATG 58.736 47.619 34.81 23.16 37.74 2.39
5752 7506 2.264813 GTTATGACCGTGCACGTATGT 58.735 47.619 34.81 26.13 37.74 2.29
5753 7507 3.119566 TGTTATGACCGTGCACGTATGTA 60.120 43.478 34.81 19.99 37.74 2.29
5754 7508 1.917273 ATGACCGTGCACGTATGTAC 58.083 50.000 34.81 19.30 38.02 2.90
5755 7509 0.109179 TGACCGTGCACGTATGTACC 60.109 55.000 34.81 16.37 38.13 3.34
5758 7512 0.108992 CCGTGCACGTATGTACCTGT 60.109 55.000 34.81 0.00 38.13 4.00
5780 7534 0.591659 GGTTCGTGAAAAGTGGAGGC 59.408 55.000 0.00 0.00 0.00 4.70
5790 7544 0.814010 AAGTGGAGGCGACAACACAC 60.814 55.000 16.27 7.24 40.40 3.82
5791 7545 1.522806 GTGGAGGCGACAACACACA 60.523 57.895 10.10 0.00 38.58 3.72
5792 7546 0.884704 GTGGAGGCGACAACACACAT 60.885 55.000 10.10 0.00 38.58 3.21
5794 7548 1.207593 GAGGCGACAACACACATGC 59.792 57.895 0.00 0.00 0.00 4.06
5795 7549 2.127270 GGCGACAACACACATGCG 60.127 61.111 0.00 0.00 0.00 4.73
5796 7550 2.631428 GCGACAACACACATGCGT 59.369 55.556 0.00 0.00 0.00 5.24
5797 7551 1.561717 GGCGACAACACACATGCGTA 61.562 55.000 0.00 0.00 0.00 4.42
5798 7552 0.450482 GCGACAACACACATGCGTAC 60.450 55.000 0.00 0.00 0.00 3.67
5799 7553 1.136690 CGACAACACACATGCGTACT 58.863 50.000 0.00 0.00 0.00 2.73
5808 7562 3.913763 CACACATGCGTACTTTGATTTGG 59.086 43.478 0.00 0.00 0.00 3.28
5819 7573 4.441792 ACTTTGATTTGGTGGTGCTTTTC 58.558 39.130 0.00 0.00 0.00 2.29
5822 7576 4.478206 TGATTTGGTGGTGCTTTTCAAA 57.522 36.364 0.00 0.00 0.00 2.69
5825 7579 5.988561 TGATTTGGTGGTGCTTTTCAAATAC 59.011 36.000 0.00 0.00 37.92 1.89
5826 7580 5.344743 TTTGGTGGTGCTTTTCAAATACA 57.655 34.783 0.00 0.00 0.00 2.29
5838 7596 4.481368 TTCAAATACATGGTAGCTCCGT 57.519 40.909 0.00 0.00 39.52 4.69
5848 7606 0.896226 GTAGCTCCGTGGAGAAACCT 59.104 55.000 19.98 9.22 44.53 3.50
5849 7607 2.097825 GTAGCTCCGTGGAGAAACCTA 58.902 52.381 19.98 8.27 44.53 3.08
5850 7608 1.187087 AGCTCCGTGGAGAAACCTAG 58.813 55.000 19.98 0.00 44.53 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
4 5 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
5 6 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
6 7 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
7 8 5.738495 GCTTCCCTATCCGAACCTACTTTAC 60.738 48.000 0.00 0.00 0.00 2.01
9 10 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
10 11 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
11 12 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
12 13 2.036089 CTGCTTCCCTATCCGAACCTAC 59.964 54.545 0.00 0.00 0.00 3.18
13 14 2.317040 CTGCTTCCCTATCCGAACCTA 58.683 52.381 0.00 0.00 0.00 3.08
14 15 1.123928 CTGCTTCCCTATCCGAACCT 58.876 55.000 0.00 0.00 0.00 3.50
15 16 0.106894 CCTGCTTCCCTATCCGAACC 59.893 60.000 0.00 0.00 0.00 3.62
16 17 1.120530 TCCTGCTTCCCTATCCGAAC 58.879 55.000 0.00 0.00 0.00 3.95
17 18 1.971357 GATCCTGCTTCCCTATCCGAA 59.029 52.381 0.00 0.00 0.00 4.30
18 19 1.633774 GATCCTGCTTCCCTATCCGA 58.366 55.000 0.00 0.00 0.00 4.55
19 20 0.610687 GGATCCTGCTTCCCTATCCG 59.389 60.000 3.84 0.00 0.00 4.18
20 21 1.905894 GAGGATCCTGCTTCCCTATCC 59.094 57.143 22.02 0.00 37.05 2.59
21 22 2.831526 GAGAGGATCCTGCTTCCCTATC 59.168 54.545 22.02 0.00 33.66 2.08
22 23 2.494439 GGAGAGGATCCTGCTTCCCTAT 60.494 54.545 22.02 0.00 45.64 2.57
23 24 1.133009 GGAGAGGATCCTGCTTCCCTA 60.133 57.143 22.02 0.00 45.64 3.53
24 25 0.399806 GGAGAGGATCCTGCTTCCCT 60.400 60.000 22.02 8.76 45.64 4.20
25 26 2.141312 GGAGAGGATCCTGCTTCCC 58.859 63.158 22.02 10.49 45.64 3.97
38 39 3.465403 CACCCGCCTCCTGGAGAG 61.465 72.222 25.18 17.02 42.83 3.20
39 40 2.822643 AATCACCCGCCTCCTGGAGA 62.823 60.000 25.18 3.55 34.95 3.71
40 41 2.370445 AATCACCCGCCTCCTGGAG 61.370 63.158 17.02 17.02 34.57 3.86
41 42 2.285368 AATCACCCGCCTCCTGGA 60.285 61.111 0.00 0.00 34.57 3.86
42 43 2.124570 CAATCACCCGCCTCCTGG 60.125 66.667 0.00 0.00 0.00 4.45
43 44 0.745845 CTTCAATCACCCGCCTCCTG 60.746 60.000 0.00 0.00 0.00 3.86
44 45 0.909610 TCTTCAATCACCCGCCTCCT 60.910 55.000 0.00 0.00 0.00 3.69
45 46 0.462759 CTCTTCAATCACCCGCCTCC 60.463 60.000 0.00 0.00 0.00 4.30
46 47 0.537188 TCTCTTCAATCACCCGCCTC 59.463 55.000 0.00 0.00 0.00 4.70
47 48 0.984230 TTCTCTTCAATCACCCGCCT 59.016 50.000 0.00 0.00 0.00 5.52
48 49 1.821216 TTTCTCTTCAATCACCCGCC 58.179 50.000 0.00 0.00 0.00 6.13
49 50 3.915437 TTTTTCTCTTCAATCACCCGC 57.085 42.857 0.00 0.00 0.00 6.13
66 67 5.634859 GCTTTTGTCATCGGATCATGTTTTT 59.365 36.000 0.00 0.00 0.00 1.94
67 68 5.047802 AGCTTTTGTCATCGGATCATGTTTT 60.048 36.000 0.00 0.00 0.00 2.43
68 69 4.460382 AGCTTTTGTCATCGGATCATGTTT 59.540 37.500 0.00 0.00 0.00 2.83
69 70 4.012374 AGCTTTTGTCATCGGATCATGTT 58.988 39.130 0.00 0.00 0.00 2.71
70 71 3.376234 CAGCTTTTGTCATCGGATCATGT 59.624 43.478 0.00 0.00 0.00 3.21
71 72 3.624410 TCAGCTTTTGTCATCGGATCATG 59.376 43.478 0.00 0.00 0.00 3.07
72 73 3.877559 TCAGCTTTTGTCATCGGATCAT 58.122 40.909 0.00 0.00 0.00 2.45
73 74 3.333029 TCAGCTTTTGTCATCGGATCA 57.667 42.857 0.00 0.00 0.00 2.92
74 75 4.685169 TTTCAGCTTTTGTCATCGGATC 57.315 40.909 0.00 0.00 0.00 3.36
75 76 4.761739 TCTTTTCAGCTTTTGTCATCGGAT 59.238 37.500 0.00 0.00 0.00 4.18
76 77 4.133820 TCTTTTCAGCTTTTGTCATCGGA 58.866 39.130 0.00 0.00 0.00 4.55
77 78 4.488126 TCTTTTCAGCTTTTGTCATCGG 57.512 40.909 0.00 0.00 0.00 4.18
78 79 5.344128 CCAATCTTTTCAGCTTTTGTCATCG 59.656 40.000 0.00 0.00 0.00 3.84
79 80 6.449698 TCCAATCTTTTCAGCTTTTGTCATC 58.550 36.000 0.00 0.00 0.00 2.92
80 81 6.041296 ACTCCAATCTTTTCAGCTTTTGTCAT 59.959 34.615 0.00 0.00 0.00 3.06
81 82 5.360714 ACTCCAATCTTTTCAGCTTTTGTCA 59.639 36.000 0.00 0.00 0.00 3.58
82 83 5.689068 CACTCCAATCTTTTCAGCTTTTGTC 59.311 40.000 0.00 0.00 0.00 3.18
83 84 5.360714 TCACTCCAATCTTTTCAGCTTTTGT 59.639 36.000 0.00 0.00 0.00 2.83
84 85 5.835257 TCACTCCAATCTTTTCAGCTTTTG 58.165 37.500 0.00 0.00 0.00 2.44
85 86 6.469782 TTCACTCCAATCTTTTCAGCTTTT 57.530 33.333 0.00 0.00 0.00 2.27
86 87 6.469782 TTTCACTCCAATCTTTTCAGCTTT 57.530 33.333 0.00 0.00 0.00 3.51
87 88 6.097412 ACTTTTCACTCCAATCTTTTCAGCTT 59.903 34.615 0.00 0.00 0.00 3.74
88 89 5.595952 ACTTTTCACTCCAATCTTTTCAGCT 59.404 36.000 0.00 0.00 0.00 4.24
89 90 5.836347 ACTTTTCACTCCAATCTTTTCAGC 58.164 37.500 0.00 0.00 0.00 4.26
90 91 8.383318 TCTACTTTTCACTCCAATCTTTTCAG 57.617 34.615 0.00 0.00 0.00 3.02
91 92 8.210946 TCTCTACTTTTCACTCCAATCTTTTCA 58.789 33.333 0.00 0.00 0.00 2.69
92 93 8.608844 TCTCTACTTTTCACTCCAATCTTTTC 57.391 34.615 0.00 0.00 0.00 2.29
93 94 9.007901 CATCTCTACTTTTCACTCCAATCTTTT 57.992 33.333 0.00 0.00 0.00 2.27
94 95 7.120432 GCATCTCTACTTTTCACTCCAATCTTT 59.880 37.037 0.00 0.00 0.00 2.52
95 96 6.597280 GCATCTCTACTTTTCACTCCAATCTT 59.403 38.462 0.00 0.00 0.00 2.40
96 97 6.112058 GCATCTCTACTTTTCACTCCAATCT 58.888 40.000 0.00 0.00 0.00 2.40
97 98 5.877012 TGCATCTCTACTTTTCACTCCAATC 59.123 40.000 0.00 0.00 0.00 2.67
98 99 5.809001 TGCATCTCTACTTTTCACTCCAAT 58.191 37.500 0.00 0.00 0.00 3.16
99 100 5.227569 TGCATCTCTACTTTTCACTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
100 101 4.890158 TGCATCTCTACTTTTCACTCCA 57.110 40.909 0.00 0.00 0.00 3.86
101 102 5.064452 CACATGCATCTCTACTTTTCACTCC 59.936 44.000 0.00 0.00 0.00 3.85
102 103 5.641209 ACACATGCATCTCTACTTTTCACTC 59.359 40.000 0.00 0.00 0.00 3.51
103 104 5.555017 ACACATGCATCTCTACTTTTCACT 58.445 37.500 0.00 0.00 0.00 3.41
104 105 5.869753 ACACATGCATCTCTACTTTTCAC 57.130 39.130 0.00 0.00 0.00 3.18
105 106 6.701340 AGTACACATGCATCTCTACTTTTCA 58.299 36.000 0.00 0.00 0.00 2.69
106 107 8.191446 TCTAGTACACATGCATCTCTACTTTTC 58.809 37.037 0.00 0.00 0.00 2.29
107 108 8.067751 TCTAGTACACATGCATCTCTACTTTT 57.932 34.615 0.00 0.00 0.00 2.27
108 109 7.340743 ACTCTAGTACACATGCATCTCTACTTT 59.659 37.037 0.00 0.00 0.00 2.66
109 110 6.831353 ACTCTAGTACACATGCATCTCTACTT 59.169 38.462 0.00 0.00 0.00 2.24
110 111 6.361433 ACTCTAGTACACATGCATCTCTACT 58.639 40.000 0.00 4.19 0.00 2.57
111 112 6.485313 AGACTCTAGTACACATGCATCTCTAC 59.515 42.308 0.00 0.00 0.00 2.59
112 113 6.596621 AGACTCTAGTACACATGCATCTCTA 58.403 40.000 0.00 0.00 0.00 2.43
113 114 5.445069 AGACTCTAGTACACATGCATCTCT 58.555 41.667 0.00 0.00 0.00 3.10
114 115 5.766150 AGACTCTAGTACACATGCATCTC 57.234 43.478 0.00 0.00 0.00 2.75
115 116 6.537453 AAAGACTCTAGTACACATGCATCT 57.463 37.500 0.00 0.00 0.00 2.90
116 117 8.879342 AATAAAGACTCTAGTACACATGCATC 57.121 34.615 0.00 0.00 0.00 3.91
117 118 9.672673 AAAATAAAGACTCTAGTACACATGCAT 57.327 29.630 0.00 0.00 0.00 3.96
118 119 9.502091 AAAAATAAAGACTCTAGTACACATGCA 57.498 29.630 0.00 0.00 0.00 3.96
142 143 9.474313 ACTAGTGGGCATCATTAAGAAATAAAA 57.526 29.630 0.00 0.00 0.00 1.52
143 144 8.902806 CACTAGTGGGCATCATTAAGAAATAAA 58.097 33.333 15.49 0.00 0.00 1.40
144 145 8.271458 TCACTAGTGGGCATCATTAAGAAATAA 58.729 33.333 22.48 0.00 0.00 1.40
145 146 7.801104 TCACTAGTGGGCATCATTAAGAAATA 58.199 34.615 22.48 0.00 0.00 1.40
146 147 6.662755 TCACTAGTGGGCATCATTAAGAAAT 58.337 36.000 22.48 0.00 0.00 2.17
147 148 6.061022 TCACTAGTGGGCATCATTAAGAAA 57.939 37.500 22.48 0.00 0.00 2.52
148 149 5.692115 TCACTAGTGGGCATCATTAAGAA 57.308 39.130 22.48 0.00 0.00 2.52
149 150 5.894298 ATCACTAGTGGGCATCATTAAGA 57.106 39.130 22.48 0.00 0.00 2.10
150 151 5.641209 GCTATCACTAGTGGGCATCATTAAG 59.359 44.000 22.48 4.59 0.00 1.85
151 152 5.307976 AGCTATCACTAGTGGGCATCATTAA 59.692 40.000 22.48 0.00 0.00 1.40
152 153 4.840680 AGCTATCACTAGTGGGCATCATTA 59.159 41.667 22.48 0.13 0.00 1.90
153 154 3.649981 AGCTATCACTAGTGGGCATCATT 59.350 43.478 22.48 6.24 0.00 2.57
154 155 3.246301 AGCTATCACTAGTGGGCATCAT 58.754 45.455 22.48 10.01 0.00 2.45
155 156 2.682594 AGCTATCACTAGTGGGCATCA 58.317 47.619 22.48 2.45 0.00 3.07
156 157 3.397482 CAAGCTATCACTAGTGGGCATC 58.603 50.000 22.48 8.63 0.00 3.91
157 158 2.486191 GCAAGCTATCACTAGTGGGCAT 60.486 50.000 22.48 13.93 0.00 4.40
158 159 1.134401 GCAAGCTATCACTAGTGGGCA 60.134 52.381 22.48 4.02 0.00 5.36
159 160 1.134401 TGCAAGCTATCACTAGTGGGC 60.134 52.381 22.48 21.31 0.00 5.36
160 161 2.988010 TGCAAGCTATCACTAGTGGG 57.012 50.000 22.48 13.60 0.00 4.61
161 162 3.562973 CCAATGCAAGCTATCACTAGTGG 59.437 47.826 22.48 8.08 0.00 4.00
162 163 4.445453 TCCAATGCAAGCTATCACTAGTG 58.555 43.478 17.17 17.17 0.00 2.74
163 164 4.406972 TCTCCAATGCAAGCTATCACTAGT 59.593 41.667 0.00 0.00 0.00 2.57
164 165 4.953667 TCTCCAATGCAAGCTATCACTAG 58.046 43.478 0.00 0.00 0.00 2.57
165 166 4.202295 CCTCTCCAATGCAAGCTATCACTA 60.202 45.833 0.00 0.00 0.00 2.74
166 167 3.433314 CCTCTCCAATGCAAGCTATCACT 60.433 47.826 0.00 0.00 0.00 3.41
167 168 2.877168 CCTCTCCAATGCAAGCTATCAC 59.123 50.000 0.00 0.00 0.00 3.06
168 169 2.773661 TCCTCTCCAATGCAAGCTATCA 59.226 45.455 0.00 0.00 0.00 2.15
169 170 3.482156 TCCTCTCCAATGCAAGCTATC 57.518 47.619 0.00 0.00 0.00 2.08
170 171 3.939740 TTCCTCTCCAATGCAAGCTAT 57.060 42.857 0.00 0.00 0.00 2.97
171 172 3.719268 TTTCCTCTCCAATGCAAGCTA 57.281 42.857 0.00 0.00 0.00 3.32
172 173 2.592102 TTTCCTCTCCAATGCAAGCT 57.408 45.000 0.00 0.00 0.00 3.74
173 174 3.665745 TTTTTCCTCTCCAATGCAAGC 57.334 42.857 0.00 0.00 0.00 4.01
174 175 7.820872 ACATTAATTTTTCCTCTCCAATGCAAG 59.179 33.333 0.00 0.00 0.00 4.01
175 176 7.678837 ACATTAATTTTTCCTCTCCAATGCAA 58.321 30.769 0.00 0.00 0.00 4.08
176 177 7.243604 ACATTAATTTTTCCTCTCCAATGCA 57.756 32.000 0.00 0.00 0.00 3.96
177 178 8.686334 TCTACATTAATTTTTCCTCTCCAATGC 58.314 33.333 0.00 0.00 0.00 3.56
180 181 9.753674 ACATCTACATTAATTTTTCCTCTCCAA 57.246 29.630 0.00 0.00 0.00 3.53
181 182 9.753674 AACATCTACATTAATTTTTCCTCTCCA 57.246 29.630 0.00 0.00 0.00 3.86
203 204 9.054922 CCCATGACAAAAAGTAATTTGAAACAT 57.945 29.630 6.76 6.46 41.73 2.71
204 205 8.260818 TCCCATGACAAAAAGTAATTTGAAACA 58.739 29.630 6.76 4.78 41.73 2.83
205 206 8.547894 GTCCCATGACAAAAAGTAATTTGAAAC 58.452 33.333 6.76 0.07 41.73 2.78
206 207 8.655651 GTCCCATGACAAAAAGTAATTTGAAA 57.344 30.769 6.76 0.00 41.73 2.69
222 223 7.826252 GGCATATGGATATATATGTCCCATGAC 59.174 40.741 27.17 24.12 41.14 3.06
223 224 7.516906 TGGCATATGGATATATATGTCCCATGA 59.483 37.037 27.17 13.31 42.29 3.07
224 225 7.609146 GTGGCATATGGATATATATGTCCCATG 59.391 40.741 21.93 22.44 42.29 3.66
225 226 7.257162 GGTGGCATATGGATATATATGTCCCAT 60.257 40.741 21.93 18.17 42.29 4.00
226 227 6.044287 GGTGGCATATGGATATATATGTCCCA 59.956 42.308 21.93 13.45 42.29 4.37
227 228 6.044287 TGGTGGCATATGGATATATATGTCCC 59.956 42.308 21.93 8.96 42.29 4.46
228 229 7.078249 TGGTGGCATATGGATATATATGTCC 57.922 40.000 19.00 19.00 42.29 4.02
229 230 9.006839 CAATGGTGGCATATGGATATATATGTC 57.993 37.037 4.56 0.97 42.92 3.06
230 231 8.505246 ACAATGGTGGCATATGGATATATATGT 58.495 33.333 4.56 0.00 41.14 2.29
231 232 8.929260 ACAATGGTGGCATATGGATATATATG 57.071 34.615 4.56 0.00 41.70 1.78
233 234 8.997734 TGTACAATGGTGGCATATGGATATATA 58.002 33.333 4.56 0.00 0.00 0.86
234 235 7.871082 TGTACAATGGTGGCATATGGATATAT 58.129 34.615 4.56 0.00 0.00 0.86
235 236 7.264294 TGTACAATGGTGGCATATGGATATA 57.736 36.000 4.56 0.00 0.00 0.86
236 237 6.138391 TGTACAATGGTGGCATATGGATAT 57.862 37.500 4.56 0.00 0.00 1.63
237 238 5.574970 TGTACAATGGTGGCATATGGATA 57.425 39.130 4.56 0.00 0.00 2.59
238 239 4.451891 TGTACAATGGTGGCATATGGAT 57.548 40.909 4.56 0.00 0.00 3.41
239 240 3.941704 TGTACAATGGTGGCATATGGA 57.058 42.857 4.56 0.00 0.00 3.41
240 241 3.305539 GCATGTACAATGGTGGCATATGG 60.306 47.826 0.00 0.00 0.00 2.74
241 242 3.305539 GGCATGTACAATGGTGGCATATG 60.306 47.826 14.01 0.00 37.14 1.78
242 243 2.892852 GGCATGTACAATGGTGGCATAT 59.107 45.455 14.01 0.00 37.14 1.78
243 244 2.305928 GGCATGTACAATGGTGGCATA 58.694 47.619 14.01 0.00 37.14 3.14
244 245 1.113788 GGCATGTACAATGGTGGCAT 58.886 50.000 14.01 0.00 37.14 4.40
245 246 0.969917 GGGCATGTACAATGGTGGCA 60.970 55.000 18.87 0.00 38.72 4.92
246 247 0.684153 AGGGCATGTACAATGGTGGC 60.684 55.000 11.25 11.25 36.52 5.01
247 248 1.105457 CAGGGCATGTACAATGGTGG 58.895 55.000 0.00 0.00 0.00 4.61
248 249 1.745087 GTCAGGGCATGTACAATGGTG 59.255 52.381 0.00 0.00 0.00 4.17
249 250 1.354031 TGTCAGGGCATGTACAATGGT 59.646 47.619 0.00 0.00 0.00 3.55
250 251 1.745087 GTGTCAGGGCATGTACAATGG 59.255 52.381 0.00 0.00 0.00 3.16
251 252 2.162208 GTGTGTCAGGGCATGTACAATG 59.838 50.000 11.97 0.12 32.00 2.82
252 253 2.224744 TGTGTGTCAGGGCATGTACAAT 60.225 45.455 11.97 0.00 32.00 2.71
253 254 1.141858 TGTGTGTCAGGGCATGTACAA 59.858 47.619 11.97 3.27 32.00 2.41
254 255 0.761802 TGTGTGTCAGGGCATGTACA 59.238 50.000 0.00 0.00 0.00 2.90
255 256 1.535462 GTTGTGTGTCAGGGCATGTAC 59.465 52.381 0.00 0.70 0.00 2.90
256 257 1.875996 CGTTGTGTGTCAGGGCATGTA 60.876 52.381 0.00 0.00 0.00 2.29
257 258 1.165907 CGTTGTGTGTCAGGGCATGT 61.166 55.000 0.00 0.00 0.00 3.21
258 259 0.884259 TCGTTGTGTGTCAGGGCATG 60.884 55.000 0.00 0.00 0.00 4.06
259 260 0.036732 ATCGTTGTGTGTCAGGGCAT 59.963 50.000 0.00 0.00 0.00 4.40
260 261 0.682292 TATCGTTGTGTGTCAGGGCA 59.318 50.000 0.00 0.00 0.00 5.36
261 262 1.337823 ACTATCGTTGTGTGTCAGGGC 60.338 52.381 0.00 0.00 0.00 5.19
262 263 2.743636 ACTATCGTTGTGTGTCAGGG 57.256 50.000 0.00 0.00 0.00 4.45
263 264 6.721571 AATTTACTATCGTTGTGTGTCAGG 57.278 37.500 0.00 0.00 0.00 3.86
264 265 8.328146 CCATAATTTACTATCGTTGTGTGTCAG 58.672 37.037 0.00 0.00 0.00 3.51
265 266 7.201574 GCCATAATTTACTATCGTTGTGTGTCA 60.202 37.037 0.00 0.00 0.00 3.58
266 267 7.123830 GCCATAATTTACTATCGTTGTGTGTC 58.876 38.462 0.00 0.00 0.00 3.67
279 280 4.465660 TGTGCATGTTGGCCATAATTTACT 59.534 37.500 6.09 0.00 30.71 2.24
294 295 2.558617 ACATGTCGCATGTGCATGT 58.441 47.368 28.22 28.22 45.56 3.21
305 306 4.884257 CCGGGGCGGTACATGTCG 62.884 72.222 0.00 1.26 42.73 4.35
315 316 0.321671 ATCATTGATCTACCGGGGCG 59.678 55.000 6.32 0.00 0.00 6.13
316 317 1.347707 TCATCATTGATCTACCGGGGC 59.652 52.381 6.32 0.00 0.00 5.80
336 337 8.304596 TCACTCTCGTTTTCTTCAATGTAGTAT 58.695 33.333 0.00 0.00 0.00 2.12
337 338 7.654568 TCACTCTCGTTTTCTTCAATGTAGTA 58.345 34.615 0.00 0.00 0.00 1.82
338 339 6.513180 TCACTCTCGTTTTCTTCAATGTAGT 58.487 36.000 0.00 0.00 0.00 2.73
339 340 7.408132 TTCACTCTCGTTTTCTTCAATGTAG 57.592 36.000 0.00 0.00 0.00 2.74
374 375 0.911769 TGAGATGTGATGGGGTCCAC 59.088 55.000 0.00 0.00 35.80 4.02
399 400 3.820557 TGTCTTGTCCAGCTTAGCTTTT 58.179 40.909 3.00 0.00 36.40 2.27
403 404 3.403038 TCTTTGTCTTGTCCAGCTTAGC 58.597 45.455 0.00 0.00 0.00 3.09
468 483 1.079503 GTTGAGCTCGTGATTGGGTC 58.920 55.000 9.64 0.00 0.00 4.46
758 788 2.380433 ATCTGAGCGATGGCAGAGGC 62.380 60.000 1.50 0.00 43.65 4.70
831 861 1.352352 CAAGATCTGTGAAGGTGGGGT 59.648 52.381 0.00 0.00 0.00 4.95
850 886 2.404559 AGGGTGGTCGGAATTATAGCA 58.595 47.619 0.00 0.00 0.00 3.49
860 896 1.524008 GCAAAAGGAAGGGTGGTCGG 61.524 60.000 0.00 0.00 0.00 4.79
872 908 2.388121 CGCTCAAAGAACAGCAAAAGG 58.612 47.619 0.00 0.00 35.15 3.11
878 915 1.131420 CTCGCGCTCAAAGAACAGC 59.869 57.895 5.56 0.00 0.00 4.40
881 918 1.079503 ATTCCTCGCGCTCAAAGAAC 58.920 50.000 5.56 0.00 0.00 3.01
921 963 0.888285 AGCTCAAGAACCAGCAGCAC 60.888 55.000 0.00 0.00 38.18 4.40
962 1004 1.574526 CCCCCTCCTCCAAATCAGCA 61.575 60.000 0.00 0.00 0.00 4.41
979 1034 2.283676 TCCACCGAGTCACCTCCC 60.284 66.667 0.00 0.00 33.93 4.30
988 1043 2.808315 CGACATCCCTCCACCGAG 59.192 66.667 0.00 0.00 35.72 4.63
1061 1116 4.351054 CGCCAGCACCCTTCCCTT 62.351 66.667 0.00 0.00 0.00 3.95
1098 1153 2.283676 GACCCCCTCCTCACGACA 60.284 66.667 0.00 0.00 0.00 4.35
1451 1656 1.135199 GCATCTTGCAGGACATGTTGG 60.135 52.381 0.00 0.00 44.26 3.77
1641 1847 3.114616 TCGTCGTCGTCCTCGTCC 61.115 66.667 1.33 0.00 38.33 4.79
2006 2665 1.282248 TTTCAGGAAGAACGCGCGAG 61.282 55.000 39.36 10.29 35.56 5.03
2007 2666 0.876777 TTTTCAGGAAGAACGCGCGA 60.877 50.000 39.36 7.53 35.56 5.87
2008 2667 0.041663 TTTTTCAGGAAGAACGCGCG 60.042 50.000 30.96 30.96 35.56 6.86
2009 2668 3.837669 TTTTTCAGGAAGAACGCGC 57.162 47.368 5.73 0.00 35.56 6.86
2757 4159 4.953010 TGCAGGCGCCTTCTTGCA 62.953 61.111 30.59 30.59 37.32 4.08
2818 4220 4.106925 GGCCCCAGTCTCTGCCAG 62.107 72.222 0.00 0.00 43.46 4.85
3159 4576 2.353261 TCGCGCGAAACGTACACA 60.353 55.556 32.97 2.47 46.11 3.72
3606 5026 1.896465 CTCTCCCTGTCCGTCTTCTTT 59.104 52.381 0.00 0.00 0.00 2.52
4503 5933 2.126031 GCGAACGTGTCCTCCTCC 60.126 66.667 0.00 0.00 0.00 4.30
4827 6257 2.421388 CGGGAAGCTGAATCCACCAATA 60.421 50.000 5.31 0.00 38.80 1.90
4830 6260 1.299648 CGGGAAGCTGAATCCACCA 59.700 57.895 5.31 0.00 38.80 4.17
4833 6263 1.207089 CACTACGGGAAGCTGAATCCA 59.793 52.381 5.31 0.00 38.80 3.41
4836 6266 1.276622 ACCACTACGGGAAGCTGAAT 58.723 50.000 0.00 0.00 40.22 2.57
4856 6286 3.820467 CAGATGAACTTTGGTAACTGCCA 59.180 43.478 0.00 0.00 36.62 4.92
4858 6288 5.470098 TCTTCAGATGAACTTTGGTAACTGC 59.530 40.000 0.00 0.00 37.61 4.40
4859 6289 7.496529 TTCTTCAGATGAACTTTGGTAACTG 57.503 36.000 0.00 0.00 37.61 3.16
4860 6290 6.205658 GCTTCTTCAGATGAACTTTGGTAACT 59.794 38.462 0.00 0.00 37.61 2.24
4861 6291 6.205658 AGCTTCTTCAGATGAACTTTGGTAAC 59.794 38.462 0.00 0.00 0.00 2.50
4863 6293 5.869579 AGCTTCTTCAGATGAACTTTGGTA 58.130 37.500 0.00 0.00 0.00 3.25
4864 6294 4.723309 AGCTTCTTCAGATGAACTTTGGT 58.277 39.130 0.00 0.00 0.00 3.67
4866 6296 4.668686 GCGAGCTTCTTCAGATGAACTTTG 60.669 45.833 0.00 0.00 0.00 2.77
4867 6297 3.434984 GCGAGCTTCTTCAGATGAACTTT 59.565 43.478 0.00 0.00 0.00 2.66
5075 6505 5.008619 AGCTCACTGACACAGATGAATAG 57.991 43.478 5.76 0.00 35.18 1.73
5135 6565 5.220710 AGAGTTGACAGTGCAGATAAACT 57.779 39.130 0.00 0.00 0.00 2.66
5136 6566 5.237344 ACAAGAGTTGACAGTGCAGATAAAC 59.763 40.000 0.00 0.00 0.00 2.01
5137 6567 5.368145 ACAAGAGTTGACAGTGCAGATAAA 58.632 37.500 0.00 0.00 0.00 1.40
5138 6568 4.960938 ACAAGAGTTGACAGTGCAGATAA 58.039 39.130 0.00 0.00 0.00 1.75
5139 6569 4.039124 TGACAAGAGTTGACAGTGCAGATA 59.961 41.667 0.00 0.00 31.98 1.98
5140 6570 3.181462 TGACAAGAGTTGACAGTGCAGAT 60.181 43.478 0.00 0.00 31.98 2.90
5141 6571 2.168313 TGACAAGAGTTGACAGTGCAGA 59.832 45.455 0.00 0.00 31.98 4.26
5142 6572 2.286294 GTGACAAGAGTTGACAGTGCAG 59.714 50.000 0.00 0.00 36.10 4.41
5143 6573 2.279741 GTGACAAGAGTTGACAGTGCA 58.720 47.619 0.00 0.00 36.10 4.57
5144 6574 2.279741 TGTGACAAGAGTTGACAGTGC 58.720 47.619 0.00 0.00 36.10 4.40
5145 6575 5.065090 TGAAATGTGACAAGAGTTGACAGTG 59.935 40.000 0.00 0.00 36.10 3.66
5146 6576 5.185454 TGAAATGTGACAAGAGTTGACAGT 58.815 37.500 0.00 0.00 36.10 3.55
5147 6577 5.739752 TGAAATGTGACAAGAGTTGACAG 57.260 39.130 0.00 0.00 36.10 3.51
5148 6578 5.821995 TCATGAAATGTGACAAGAGTTGACA 59.178 36.000 0.00 0.00 46.80 3.58
5149 6579 6.304356 TCATGAAATGTGACAAGAGTTGAC 57.696 37.500 0.00 0.00 46.80 3.18
5150 6580 6.543465 AGTTCATGAAATGTGACAAGAGTTGA 59.457 34.615 10.35 0.00 46.80 3.18
5151 6581 6.732154 AGTTCATGAAATGTGACAAGAGTTG 58.268 36.000 10.35 0.00 46.80 3.16
5152 6582 6.949352 AGTTCATGAAATGTGACAAGAGTT 57.051 33.333 10.35 0.00 46.80 3.01
5169 6599 3.760684 GGCTCTGAATCACCAAAGTTCAT 59.239 43.478 0.00 0.00 32.05 2.57
5170 6600 3.149196 GGCTCTGAATCACCAAAGTTCA 58.851 45.455 0.00 0.00 0.00 3.18
5171 6601 3.149196 TGGCTCTGAATCACCAAAGTTC 58.851 45.455 0.00 0.00 0.00 3.01
5172 6602 3.228188 TGGCTCTGAATCACCAAAGTT 57.772 42.857 0.00 0.00 0.00 2.66
5173 6603 2.957402 TGGCTCTGAATCACCAAAGT 57.043 45.000 0.00 0.00 0.00 2.66
5174 6604 3.508793 ACAATGGCTCTGAATCACCAAAG 59.491 43.478 0.00 0.00 35.41 2.77
5175 6605 3.256383 CACAATGGCTCTGAATCACCAAA 59.744 43.478 0.00 0.00 35.41 3.28
5176 6606 2.821378 CACAATGGCTCTGAATCACCAA 59.179 45.455 0.00 0.00 35.41 3.67
5177 6607 2.040145 TCACAATGGCTCTGAATCACCA 59.960 45.455 0.00 0.00 36.43 4.17
5295 6780 7.994425 AATCTGACATTGTTTGTATACACCA 57.006 32.000 4.68 2.63 39.18 4.17
5315 6800 1.228245 ACCGCAGTGTGCCAAATCT 60.228 52.632 0.00 0.00 41.12 2.40
5316 6801 1.081242 CACCGCAGTGTGCCAAATC 60.081 57.895 0.00 0.00 41.12 2.17
5357 6848 4.724399 TGGCATCCTTGTTTTAGAACAGA 58.276 39.130 0.00 0.00 45.80 3.41
5358 6849 5.649782 ATGGCATCCTTGTTTTAGAACAG 57.350 39.130 0.00 0.00 45.80 3.16
5359 6850 6.183360 ACAAATGGCATCCTTGTTTTAGAACA 60.183 34.615 10.92 0.00 43.73 3.18
5360 6851 6.223120 ACAAATGGCATCCTTGTTTTAGAAC 58.777 36.000 10.92 0.00 36.29 3.01
5361 6852 6.041409 TGACAAATGGCATCCTTGTTTTAGAA 59.959 34.615 16.36 0.51 33.53 2.10
5377 6868 5.066246 AGCAATTTGGTTTTGTGACAAATGG 59.934 36.000 11.97 0.00 42.21 3.16
5409 6900 7.867403 CACTGTTTTATGCTTGTATTTTGAGGT 59.133 33.333 0.00 0.00 0.00 3.85
5410 6901 7.148755 GCACTGTTTTATGCTTGTATTTTGAGG 60.149 37.037 0.00 0.00 38.84 3.86
5411 6902 7.723270 GCACTGTTTTATGCTTGTATTTTGAG 58.277 34.615 0.00 0.00 38.84 3.02
5502 6997 3.825143 AGAGCAGTTTGGTTTTTGCAT 57.175 38.095 0.00 0.00 38.97 3.96
5503 6998 3.608316 AAGAGCAGTTTGGTTTTTGCA 57.392 38.095 0.00 0.00 38.97 4.08
5504 6999 5.580691 AGTTTAAGAGCAGTTTGGTTTTTGC 59.419 36.000 0.00 0.00 36.83 3.68
5505 7000 6.455513 GCAGTTTAAGAGCAGTTTGGTTTTTG 60.456 38.462 0.00 0.00 0.00 2.44
5506 7001 5.580691 GCAGTTTAAGAGCAGTTTGGTTTTT 59.419 36.000 0.00 0.00 0.00 1.94
5507 7002 5.105351 AGCAGTTTAAGAGCAGTTTGGTTTT 60.105 36.000 0.00 0.00 0.00 2.43
5508 7003 4.402474 AGCAGTTTAAGAGCAGTTTGGTTT 59.598 37.500 0.00 0.00 0.00 3.27
5509 7004 3.954258 AGCAGTTTAAGAGCAGTTTGGTT 59.046 39.130 0.00 0.00 0.00 3.67
5510 7005 3.555966 AGCAGTTTAAGAGCAGTTTGGT 58.444 40.909 0.00 0.00 0.00 3.67
5511 7006 3.817647 AGAGCAGTTTAAGAGCAGTTTGG 59.182 43.478 0.00 0.00 0.00 3.28
5512 7007 5.429957 AAGAGCAGTTTAAGAGCAGTTTG 57.570 39.130 0.00 0.00 0.00 2.93
5513 7008 7.751768 ATTAAGAGCAGTTTAAGAGCAGTTT 57.248 32.000 0.00 0.00 0.00 2.66
5514 7009 8.887717 CATATTAAGAGCAGTTTAAGAGCAGTT 58.112 33.333 0.00 0.00 0.00 3.16
5515 7010 8.043710 ACATATTAAGAGCAGTTTAAGAGCAGT 58.956 33.333 0.00 0.00 0.00 4.40
5516 7011 8.430801 ACATATTAAGAGCAGTTTAAGAGCAG 57.569 34.615 0.00 0.00 0.00 4.24
5517 7012 8.668353 CAACATATTAAGAGCAGTTTAAGAGCA 58.332 33.333 0.00 0.00 0.00 4.26
5518 7013 8.883731 TCAACATATTAAGAGCAGTTTAAGAGC 58.116 33.333 0.00 0.00 0.00 4.09
5527 7022 7.710044 ACTGACTGATCAACATATTAAGAGCAG 59.290 37.037 10.21 10.21 46.63 4.24
5528 7023 7.493645 CACTGACTGATCAACATATTAAGAGCA 59.506 37.037 0.00 0.00 33.30 4.26
5529 7024 7.708322 TCACTGACTGATCAACATATTAAGAGC 59.292 37.037 0.00 0.00 33.30 4.09
5530 7025 9.761504 ATCACTGACTGATCAACATATTAAGAG 57.238 33.333 0.00 0.00 34.07 2.85
5583 7078 4.715130 TCCTAGGTGGCAGCCGGT 62.715 66.667 13.95 0.00 35.26 5.28
5584 7079 3.854669 CTCCTAGGTGGCAGCCGG 61.855 72.222 13.95 14.22 35.26 6.13
5585 7080 3.854669 CCTCCTAGGTGGCAGCCG 61.855 72.222 16.80 4.80 35.26 5.52
5586 7081 1.768077 ATCCTCCTAGGTGGCAGCC 60.768 63.158 22.92 3.66 36.53 4.85
5644 7382 0.531200 GAGGAAGGTCACCTGTACGG 59.469 60.000 0.00 0.00 37.93 4.02
5649 7387 0.326264 CAAGGGAGGAAGGTCACCTG 59.674 60.000 0.00 0.00 37.93 4.00
5650 7388 0.104409 ACAAGGGAGGAAGGTCACCT 60.104 55.000 0.00 0.00 40.80 4.00
5660 7398 0.251916 TACGCCATTCACAAGGGAGG 59.748 55.000 0.00 0.00 36.41 4.30
5666 7404 3.120321 AGAGTTGTACGCCATTCACAA 57.880 42.857 0.00 0.00 0.00 3.33
5667 7405 2.805671 CAAGAGTTGTACGCCATTCACA 59.194 45.455 0.00 0.00 0.00 3.58
5694 7432 2.334838 CAGAAGCAGGCAAAATCAAGC 58.665 47.619 0.00 0.00 0.00 4.01
5697 7435 0.241749 CGCAGAAGCAGGCAAAATCA 59.758 50.000 0.00 0.00 42.27 2.57
5712 7450 1.531578 CATGAGATTCCATGCTCGCAG 59.468 52.381 0.00 0.00 37.68 5.18
5754 7508 3.434637 CACTTTTCACGAACCAAACAGG 58.565 45.455 0.00 0.00 45.67 4.00
5755 7509 3.127895 TCCACTTTTCACGAACCAAACAG 59.872 43.478 0.00 0.00 0.00 3.16
5758 7512 2.685897 CCTCCACTTTTCACGAACCAAA 59.314 45.455 0.00 0.00 0.00 3.28
5766 7520 1.002792 GTTGTCGCCTCCACTTTTCAC 60.003 52.381 0.00 0.00 0.00 3.18
5767 7521 1.305201 GTTGTCGCCTCCACTTTTCA 58.695 50.000 0.00 0.00 0.00 2.69
5780 7534 1.136690 AGTACGCATGTGTGTTGTCG 58.863 50.000 22.00 2.80 39.74 4.35
5790 7544 3.057596 ACCACCAAATCAAAGTACGCATG 60.058 43.478 0.00 0.00 0.00 4.06
5791 7545 3.057596 CACCACCAAATCAAAGTACGCAT 60.058 43.478 0.00 0.00 0.00 4.73
5792 7546 2.292016 CACCACCAAATCAAAGTACGCA 59.708 45.455 0.00 0.00 0.00 5.24
5794 7548 2.552315 AGCACCACCAAATCAAAGTACG 59.448 45.455 0.00 0.00 0.00 3.67
5795 7549 4.584327 AAGCACCACCAAATCAAAGTAC 57.416 40.909 0.00 0.00 0.00 2.73
5796 7550 5.127845 TGAAAAGCACCACCAAATCAAAGTA 59.872 36.000 0.00 0.00 0.00 2.24
5797 7551 4.081198 TGAAAAGCACCACCAAATCAAAGT 60.081 37.500 0.00 0.00 0.00 2.66
5798 7552 4.440880 TGAAAAGCACCACCAAATCAAAG 58.559 39.130 0.00 0.00 0.00 2.77
5799 7553 4.478206 TGAAAAGCACCACCAAATCAAA 57.522 36.364 0.00 0.00 0.00 2.69
5808 7562 4.881920 ACCATGTATTTGAAAAGCACCAC 58.118 39.130 0.00 0.00 0.00 4.16
5819 7573 2.872245 CCACGGAGCTACCATGTATTTG 59.128 50.000 0.00 0.00 38.90 2.32
5822 7576 1.964223 CTCCACGGAGCTACCATGTAT 59.036 52.381 0.00 0.00 38.90 2.29
5825 7579 0.824109 TTCTCCACGGAGCTACCATG 59.176 55.000 8.31 0.00 41.71 3.66
5826 7580 1.207329 GTTTCTCCACGGAGCTACCAT 59.793 52.381 8.31 0.00 41.71 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.