Multiple sequence alignment - TraesCS5B01G095800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G095800 chr5B 100.000 6576 0 0 1 6576 126300318 126293743 0.000000e+00 12144.0
1 TraesCS5B01G095800 chr5B 81.001 879 122 24 3481 4343 126249940 126249091 0.000000e+00 656.0
2 TraesCS5B01G095800 chr5B 76.256 1234 200 48 4786 5978 126248444 126247263 2.660000e-158 569.0
3 TraesCS5B01G095800 chr5B 93.333 150 10 0 6416 6565 126266102 126265953 8.580000e-54 222.0
4 TraesCS5B01G095800 chr5B 83.471 121 16 4 3258 3377 13848138 13848255 6.970000e-20 110.0
5 TraesCS5B01G095800 chr5B 80.597 134 20 5 3262 3392 29326997 29326867 1.510000e-16 99.0
6 TraesCS5B01G095800 chr5D 93.397 6330 262 57 8 6264 115026961 115020715 0.000000e+00 9230.0
7 TraesCS5B01G095800 chr5D 81.456 879 120 23 3481 4343 114899701 114898850 0.000000e+00 680.0
8 TraesCS5B01G095800 chr5D 76.418 1234 198 46 4786 5978 114898230 114897049 1.230000e-161 580.0
9 TraesCS5B01G095800 chr5D 92.949 156 10 1 6261 6415 115020555 115020400 6.630000e-55 226.0
10 TraesCS5B01G095800 chr5A 91.899 2938 144 30 3380 6263 121115908 121113011 0.000000e+00 4021.0
11 TraesCS5B01G095800 chr5A 90.909 1397 85 26 212 1581 121119870 121118489 0.000000e+00 1838.0
12 TraesCS5B01G095800 chr5A 80.752 878 127 24 3481 4343 120759066 120758216 0.000000e+00 647.0
13 TraesCS5B01G095800 chr5A 79.435 496 78 15 5487 5978 120753877 120753402 4.920000e-86 329.0
14 TraesCS5B01G095800 chr5A 88.688 221 21 2 2768 2984 121118065 121117845 3.910000e-67 267.0
15 TraesCS5B01G095800 chr5A 91.026 156 13 1 6261 6415 121112736 121112581 6.680000e-50 209.0
16 TraesCS5B01G095800 chr5A 86.726 113 13 2 2669 2779 121118193 121118081 2.490000e-24 124.0
17 TraesCS5B01G095800 chr5A 94.643 56 2 1 1797 1851 372958289 372958234 1.170000e-12 86.1
18 TraesCS5B01G095800 chr6D 87.097 155 14 5 6416 6567 85561810 85561659 3.150000e-38 171.0
19 TraesCS5B01G095800 chr6D 86.452 155 15 5 6416 6567 85556759 85556608 1.470000e-36 165.0
20 TraesCS5B01G095800 chr3D 85.897 156 15 5 6416 6567 276916621 276916469 6.830000e-35 159.0
21 TraesCS5B01G095800 chr3D 85.256 156 16 5 6416 6567 276921685 276921533 3.180000e-33 154.0
22 TraesCS5B01G095800 chr4D 86.232 138 15 4 6432 6567 72420172 72420307 5.310000e-31 147.0
23 TraesCS5B01G095800 chr7A 84.177 158 16 7 6416 6567 590667922 590668076 1.910000e-30 145.0
24 TraesCS5B01G095800 chr7A 83.846 130 21 0 3264 3393 379034662 379034533 2.490000e-24 124.0
25 TraesCS5B01G095800 chr6A 84.076 157 17 6 6416 6567 173201920 173201767 1.910000e-30 145.0
26 TraesCS5B01G095800 chr6A 83.544 158 18 6 6416 6568 173196856 173196702 2.470000e-29 141.0
27 TraesCS5B01G095800 chr2B 86.916 107 13 1 3288 3393 496963476 496963582 1.160000e-22 119.0
28 TraesCS5B01G095800 chr7D 82.482 137 19 5 3260 3393 336165058 336164924 1.500000e-21 115.0
29 TraesCS5B01G095800 chr7D 82.171 129 20 3 3265 3392 311001724 311001598 2.510000e-19 108.0
30 TraesCS5B01G095800 chr6B 88.750 80 9 0 3265 3344 688503724 688503645 1.510000e-16 99.0
31 TraesCS5B01G095800 chr6B 80.769 104 20 0 3265 3368 41247867 41247764 1.520000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G095800 chr5B 126293743 126300318 6575 True 12144.0 12144 100.0000 1 6576 1 chr5B.!!$R3 6575
1 TraesCS5B01G095800 chr5B 126247263 126249940 2677 True 612.5 656 78.6285 3481 5978 2 chr5B.!!$R4 2497
2 TraesCS5B01G095800 chr5D 115020400 115026961 6561 True 4728.0 9230 93.1730 8 6415 2 chr5D.!!$R2 6407
3 TraesCS5B01G095800 chr5D 114897049 114899701 2652 True 630.0 680 78.9370 3481 5978 2 chr5D.!!$R1 2497
4 TraesCS5B01G095800 chr5A 121112581 121119870 7289 True 1291.8 4021 89.8496 212 6415 5 chr5A.!!$R4 6203
5 TraesCS5B01G095800 chr5A 120758216 120759066 850 True 647.0 647 80.7520 3481 4343 1 chr5A.!!$R2 862

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 976 0.299895 CGCTGCTATCGTGCAAGAAG 59.700 55.0 6.39 6.91 42.83 2.85 F
1710 1755 0.105964 TGCCCCATAGCATACGTGTC 59.894 55.0 0.00 0.00 38.00 3.67 F
1764 1809 0.238553 GTGCTTGAGCTCGTTTTCCC 59.761 55.0 9.64 0.00 42.66 3.97 F
2591 2655 1.037579 GGCAGTTATGGGGAGCCAAC 61.038 60.0 0.00 0.00 44.59 3.77 F
2592 2656 1.376609 GCAGTTATGGGGAGCCAACG 61.377 60.0 0.00 0.00 0.00 4.10 F
3817 5511 0.671781 GTGGCGACTTCTGCAGTGAT 60.672 55.0 14.67 0.00 35.01 3.06 F
3931 5625 1.595093 GGTTGAACAATGGGGAGGCG 61.595 60.0 0.00 0.00 0.00 5.52 F
5170 7336 0.877743 GGACTCCTTGCAGTTTCAGC 59.122 55.0 0.00 0.00 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 2662 0.475828 ACCAGCCTAACAAGAGGGGT 60.476 55.000 0.00 0.0 37.06 4.95 R
2974 3107 0.034670 GGCTCATGCTCTCCACCTTT 60.035 55.000 0.00 0.0 39.59 3.11 R
3697 5391 0.103755 TAGCCGCATTGCTCTCAGAG 59.896 55.000 7.12 0.0 41.68 3.35 R
3817 5511 0.902048 CAGTCCAGCTCTCCTGACCA 60.902 60.000 0.00 0.0 44.64 4.02 R
4548 6269 1.078823 TCACCACAGTCCCCTCTACAT 59.921 52.381 0.00 0.0 0.00 2.29 R
4747 6468 0.111089 GCGCACACTCTTTCAACTCG 60.111 55.000 0.30 0.0 0.00 4.18 R
5470 7670 0.736325 CTTGGACTTGCGTAGGACCG 60.736 60.000 0.00 0.0 0.00 4.79 R
6554 9059 0.321475 GCAGGCTGATGGAGATAGGC 60.321 60.000 20.86 0.0 37.28 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.084370 CCGCACGACATTTCCTCCTC 61.084 60.000 0.00 0.00 0.00 3.71
74 75 2.750350 CTACCCCATCCCATCCGC 59.250 66.667 0.00 0.00 0.00 5.54
75 76 1.843376 CTACCCCATCCCATCCGCT 60.843 63.158 0.00 0.00 0.00 5.52
119 120 4.692475 GGTACCGTGCACCGCCTT 62.692 66.667 12.15 0.00 34.38 4.35
120 121 3.419759 GTACCGTGCACCGCCTTG 61.420 66.667 12.15 0.00 34.38 3.61
173 187 2.818132 GCTCCGACCATCCCTCTG 59.182 66.667 0.00 0.00 0.00 3.35
179 193 2.367512 ACCATCCCTCTGAGCCCC 60.368 66.667 0.00 0.00 0.00 5.80
202 216 1.754226 GCCACCTGTTCAAAACTCCAA 59.246 47.619 0.00 0.00 0.00 3.53
203 217 2.365293 GCCACCTGTTCAAAACTCCAAT 59.635 45.455 0.00 0.00 0.00 3.16
206 220 4.281688 CCACCTGTTCAAAACTCCAATGAT 59.718 41.667 0.00 0.00 0.00 2.45
207 221 5.224888 CACCTGTTCAAAACTCCAATGATG 58.775 41.667 0.00 0.00 0.00 3.07
239 253 5.992217 CCTCCACCACTAAGATAGTTAATGC 59.008 44.000 0.00 0.00 36.76 3.56
248 262 4.216411 AGATAGTTAATGCGGTTGTGGT 57.784 40.909 0.00 0.00 0.00 4.16
255 269 3.299977 GCGGTTGTGGTTTCCCCC 61.300 66.667 0.00 0.00 0.00 5.40
263 277 3.962063 GTTGTGGTTTCCCCCTAAGAAAA 59.038 43.478 0.00 0.00 35.13 2.29
272 286 7.618117 GGTTTCCCCCTAAGAAAAATAATGAGA 59.382 37.037 0.00 0.00 35.13 3.27
303 317 5.914790 TCCCCCTAAGATAGATAATGGGA 57.085 43.478 0.00 0.00 37.19 4.37
356 373 1.153568 CATGCGCTCCGGAAGAAGA 60.154 57.895 9.73 0.00 0.00 2.87
407 428 6.969993 TGTACCTGAAAAATAGCAAAACCT 57.030 33.333 0.00 0.00 0.00 3.50
416 437 9.965824 TGAAAAATAGCAAAACCTCTAAAAGAG 57.034 29.630 0.00 0.00 41.96 2.85
422 443 6.974965 AGCAAAACCTCTAAAAGAGATGTTG 58.025 36.000 5.50 1.39 45.07 3.33
443 464 3.118956 TGCAACCAAGGAACACGAATTTT 60.119 39.130 0.00 0.00 0.00 1.82
462 484 9.853921 CGAATTTTCATCAAAAAGGAGAAAAAG 57.146 29.630 0.00 0.00 40.09 2.27
522 544 6.997655 TGCAAGACTCAAGAGAGAGAAATTA 58.002 36.000 3.73 0.00 44.98 1.40
533 555 2.952310 GAGAGAAATTAAGGGCGGCATT 59.048 45.455 14.78 14.78 0.00 3.56
578 600 1.694639 GTACGTGTCTTCCGGACTTG 58.305 55.000 1.83 0.00 44.74 3.16
764 790 1.342082 AATCCGTCGAAACACGCTCG 61.342 55.000 0.00 0.00 42.26 5.03
765 791 3.467119 CCGTCGAAACACGCTCGG 61.467 66.667 0.00 0.00 45.35 4.63
766 792 2.427905 CGTCGAAACACGCTCGGA 60.428 61.111 0.00 0.00 42.26 4.55
767 793 2.426183 CGTCGAAACACGCTCGGAG 61.426 63.158 0.00 0.00 42.26 4.63
768 794 1.371389 GTCGAAACACGCTCGGAGT 60.371 57.895 6.90 0.00 42.26 3.85
769 795 1.081641 TCGAAACACGCTCGGAGTC 60.082 57.895 6.90 0.00 42.26 3.36
888 915 3.879892 CCGATCCATTTTCTTCCTCTTCC 59.120 47.826 0.00 0.00 0.00 3.46
898 925 2.110899 TCTTCCTCTTCCACAGGAGACT 59.889 50.000 0.00 0.00 41.27 3.24
949 976 0.299895 CGCTGCTATCGTGCAAGAAG 59.700 55.000 6.39 6.91 42.83 2.85
974 1001 1.195115 ACCAGAGAGTGTGTGTGTGT 58.805 50.000 0.00 0.00 0.00 3.72
1294 1321 0.459585 TCTTCTTTCCCCGCGAATCG 60.460 55.000 8.23 0.00 38.08 3.34
1446 1477 5.163874 CGGGTGCCAATGATAATTTTGTTTG 60.164 40.000 0.00 0.00 0.00 2.93
1518 1563 1.202568 TCAGGCTCTTATGATGCGGTG 60.203 52.381 0.00 0.00 0.00 4.94
1550 1595 5.474578 TCTCTGTTATGCTCTTGTGTTCT 57.525 39.130 0.00 0.00 0.00 3.01
1559 1604 4.783242 TGCTCTTGTGTTCTAATTTTCGC 58.217 39.130 0.00 0.00 0.00 4.70
1592 1637 2.235155 TGGCAGCCGTTTCTCATTACTA 59.765 45.455 7.03 0.00 0.00 1.82
1621 1666 4.783242 AGCAACTGTTTAATTACGCTGTG 58.217 39.130 0.00 0.00 0.00 3.66
1637 1682 2.801342 GCTGTGATAGGTCTAGCAGTGC 60.801 54.545 7.13 7.13 36.18 4.40
1642 1687 0.752009 TAGGTCTAGCAGTGCTCGGG 60.752 60.000 23.64 13.22 40.44 5.14
1694 1739 2.800273 CGGGTGTTGTTAGGTTTTTGCC 60.800 50.000 0.00 0.00 0.00 4.52
1695 1740 2.484065 GGGTGTTGTTAGGTTTTTGCCC 60.484 50.000 0.00 0.00 0.00 5.36
1696 1741 2.484065 GGTGTTGTTAGGTTTTTGCCCC 60.484 50.000 0.00 0.00 0.00 5.80
1697 1742 2.168728 GTGTTGTTAGGTTTTTGCCCCA 59.831 45.455 0.00 0.00 0.00 4.96
1698 1743 3.041946 TGTTGTTAGGTTTTTGCCCCAT 58.958 40.909 0.00 0.00 0.00 4.00
1699 1744 4.039366 GTGTTGTTAGGTTTTTGCCCCATA 59.961 41.667 0.00 0.00 0.00 2.74
1700 1745 4.282195 TGTTGTTAGGTTTTTGCCCCATAG 59.718 41.667 0.00 0.00 0.00 2.23
1701 1746 2.829120 TGTTAGGTTTTTGCCCCATAGC 59.171 45.455 0.00 0.00 0.00 2.97
1702 1747 2.829120 GTTAGGTTTTTGCCCCATAGCA 59.171 45.455 0.00 0.00 42.17 3.49
1703 1748 2.252535 AGGTTTTTGCCCCATAGCAT 57.747 45.000 0.00 0.00 43.64 3.79
1704 1749 3.396685 AGGTTTTTGCCCCATAGCATA 57.603 42.857 0.00 0.00 43.64 3.14
1705 1750 3.031013 AGGTTTTTGCCCCATAGCATAC 58.969 45.455 0.00 0.00 43.64 2.39
1706 1751 2.223711 GGTTTTTGCCCCATAGCATACG 60.224 50.000 0.00 0.00 43.64 3.06
1707 1752 2.425668 GTTTTTGCCCCATAGCATACGT 59.574 45.455 0.00 0.00 43.64 3.57
1708 1753 1.674359 TTTGCCCCATAGCATACGTG 58.326 50.000 0.00 0.00 43.64 4.49
1709 1754 0.544223 TTGCCCCATAGCATACGTGT 59.456 50.000 0.00 0.00 43.64 4.49
1710 1755 0.105964 TGCCCCATAGCATACGTGTC 59.894 55.000 0.00 0.00 38.00 3.67
1711 1756 0.944311 GCCCCATAGCATACGTGTCG 60.944 60.000 0.00 0.00 0.00 4.35
1712 1757 0.671796 CCCCATAGCATACGTGTCGA 59.328 55.000 0.00 0.00 0.00 4.20
1713 1758 1.272490 CCCCATAGCATACGTGTCGAT 59.728 52.381 0.00 0.00 0.00 3.59
1714 1759 2.328473 CCCATAGCATACGTGTCGATG 58.672 52.381 0.00 0.00 0.00 3.84
1715 1760 2.030274 CCCATAGCATACGTGTCGATGA 60.030 50.000 0.00 0.00 0.00 2.92
1730 1775 0.456142 GATGACGAGCGTGTGCAGTA 60.456 55.000 0.00 0.00 46.23 2.74
1733 1778 2.258591 CGAGCGTGTGCAGTAGGT 59.741 61.111 0.00 0.00 46.23 3.08
1734 1779 1.372997 CGAGCGTGTGCAGTAGGTT 60.373 57.895 0.00 0.00 46.23 3.50
1758 1803 1.746220 CCTAGTAGTGCTTGAGCTCGT 59.254 52.381 9.64 0.00 42.66 4.18
1764 1809 0.238553 GTGCTTGAGCTCGTTTTCCC 59.761 55.000 9.64 0.00 42.66 3.97
1795 1840 5.602978 TCCCATCTCCTATTAAACTCTGGAC 59.397 44.000 0.00 0.00 0.00 4.02
1807 1853 3.983044 ACTCTGGACTGGTGTATTTCC 57.017 47.619 0.00 0.00 0.00 3.13
1837 1883 7.603180 ATCTTTAATGAAAAGGGGATAAGCC 57.397 36.000 0.00 0.00 44.10 4.35
1902 1950 7.780271 ACTTTCCACTAAGATTTTCTTCCTGTT 59.220 33.333 0.00 0.00 37.89 3.16
1905 1953 8.166422 TCCACTAAGATTTTCTTCCTGTTTTC 57.834 34.615 0.00 0.00 37.89 2.29
1906 1954 7.041372 TCCACTAAGATTTTCTTCCTGTTTTCG 60.041 37.037 0.00 0.00 37.89 3.46
1907 1955 7.255139 CCACTAAGATTTTCTTCCTGTTTTCGT 60.255 37.037 0.00 0.00 37.89 3.85
1908 1956 8.770828 CACTAAGATTTTCTTCCTGTTTTCGTA 58.229 33.333 0.00 0.00 37.89 3.43
1909 1957 8.771766 ACTAAGATTTTCTTCCTGTTTTCGTAC 58.228 33.333 0.00 0.00 37.89 3.67
1981 2030 7.928167 TGGAAAATGTTTTGTACATACAATGCA 59.072 29.630 13.36 11.37 46.75 3.96
2022 2074 8.352942 ACCATCTATTGAAAAACAGTTCTTGTC 58.647 33.333 0.00 0.00 39.73 3.18
2040 2092 7.864108 TCTTGTCTTTCAAAGAGAATGTTCA 57.136 32.000 10.01 0.00 39.66 3.18
2099 2151 9.545105 AAAAATGTCATGCATGTCTTAGAAAAA 57.455 25.926 25.43 2.92 37.96 1.94
2100 2152 9.715121 AAAATGTCATGCATGTCTTAGAAAAAT 57.285 25.926 25.43 5.12 37.96 1.82
2211 2264 8.458052 TCATGTAACTAGTTAAAATGCCACATG 58.542 33.333 24.79 24.79 0.00 3.21
2275 2328 5.999205 AATTGGAATTATGAGGTGCAACA 57.001 34.783 3.64 0.00 39.98 3.33
2591 2655 1.037579 GGCAGTTATGGGGAGCCAAC 61.038 60.000 0.00 0.00 44.59 3.77
2592 2656 1.376609 GCAGTTATGGGGAGCCAACG 61.377 60.000 0.00 0.00 0.00 4.10
2598 2662 1.847798 ATGGGGAGCCAACGCACTAA 61.848 55.000 0.00 0.00 37.52 2.24
2700 2800 8.465273 AATAAAGATAAAGATTAAGCCGGCTT 57.535 30.769 41.05 41.05 39.83 4.35
2703 2803 7.875327 AAGATAAAGATTAAGCCGGCTTTTA 57.125 32.000 43.93 33.15 37.47 1.52
2766 2895 4.592778 ACATGTGAAAGGGCATAAAAACCT 59.407 37.500 0.00 0.00 35.78 3.50
2780 2909 9.616634 GGCATAAAAACCTAACAAGTAACTTAC 57.383 33.333 0.00 0.00 0.00 2.34
2928 3061 2.815503 GGCTTACCCGTGCTTCTTTTTA 59.184 45.455 0.00 0.00 0.00 1.52
2974 3107 9.927668 CTTAGCAAATTGGAAAATTTAGAGGAA 57.072 29.630 0.00 0.00 31.67 3.36
3017 3216 8.103948 CCATGAAGTGGTTAGATTCATATTCC 57.896 38.462 0.00 0.00 40.71 3.01
3088 3320 3.469899 TGTTGCTCACATTGTATTCGC 57.530 42.857 0.00 0.00 0.00 4.70
3167 3399 2.979678 ACACCCAAGGTAACAGATCTGT 59.020 45.455 22.89 22.89 38.77 3.41
3262 3498 8.494433 AGCCTTTTGGTGAGTTATCATTCTATA 58.506 33.333 0.00 0.00 42.99 1.31
3263 3499 9.289782 GCCTTTTGGTGAGTTATCATTCTATAT 57.710 33.333 0.00 0.00 42.99 0.86
3322 3558 8.687292 ATTCTATCAACATGCAACTATGTCAT 57.313 30.769 0.00 0.00 40.24 3.06
3328 3564 5.095145 ACATGCAACTATGTCATCTCACT 57.905 39.130 0.00 0.00 36.60 3.41
3332 3568 4.248859 GCAACTATGTCATCTCACTGTGT 58.751 43.478 7.79 0.00 0.00 3.72
3350 3586 3.577415 TGTGTCATCATGCATGGGAAAAA 59.423 39.130 25.97 11.81 32.64 1.94
3391 3627 7.632028 GCACCATGCATGCTATCCATATTTAAT 60.632 37.037 21.69 0.00 44.26 1.40
3392 3628 8.905850 CACCATGCATGCTATCCATATTTAATA 58.094 33.333 21.69 0.00 31.47 0.98
3393 3629 9.128404 ACCATGCATGCTATCCATATTTAATAG 57.872 33.333 21.69 3.44 31.47 1.73
3471 5155 2.808543 AGTTTCAGTTCTCGCATTGTCC 59.191 45.455 0.00 0.00 0.00 4.02
3472 5156 2.808543 GTTTCAGTTCTCGCATTGTCCT 59.191 45.455 0.00 0.00 0.00 3.85
3697 5391 8.345565 CCAATTTACACAGACAAGATTATAGCC 58.654 37.037 0.00 0.00 0.00 3.93
3817 5511 0.671781 GTGGCGACTTCTGCAGTGAT 60.672 55.000 14.67 0.00 35.01 3.06
3847 5541 2.301583 GAGCTGGACTGAAGAGGAGTTT 59.698 50.000 0.00 0.00 0.00 2.66
3931 5625 1.595093 GGTTGAACAATGGGGAGGCG 61.595 60.000 0.00 0.00 0.00 5.52
4137 5856 5.863935 GCATGTTCTTTGTTTCTATTGGACC 59.136 40.000 0.00 0.00 0.00 4.46
4139 5858 4.830600 TGTTCTTTGTTTCTATTGGACCCC 59.169 41.667 0.00 0.00 0.00 4.95
4151 5870 3.621682 TTGGACCCCCATTACAGTTTT 57.378 42.857 0.00 0.00 43.12 2.43
4231 5950 2.166459 TGAAGTGTATCGCCTGGAAGAG 59.834 50.000 0.00 0.00 34.07 2.85
4312 6033 3.885901 AGGACTTCTTGAAGGCTTTGAAC 59.114 43.478 14.93 0.00 0.00 3.18
4331 6052 1.974343 AAGGACGCAGACGAGCTCT 60.974 57.895 12.85 0.00 43.93 4.09
4362 6083 7.808218 ACGGTATAAAATCTCCCCTAAAATCA 58.192 34.615 0.00 0.00 0.00 2.57
4363 6084 8.276477 ACGGTATAAAATCTCCCCTAAAATCAA 58.724 33.333 0.00 0.00 0.00 2.57
4364 6085 9.297037 CGGTATAAAATCTCCCCTAAAATCAAT 57.703 33.333 0.00 0.00 0.00 2.57
4474 6195 3.119291 CGAGATCAAGAAGCGCAGTAAT 58.881 45.455 11.47 0.00 0.00 1.89
4504 6225 3.370840 AGAATGGTTAAGCATGCCAGA 57.629 42.857 20.22 0.00 35.56 3.86
4548 6269 1.942657 GGAGCTCAAAGCATATCGCAA 59.057 47.619 17.19 0.00 45.56 4.85
4560 6281 3.589988 CATATCGCAATGTAGAGGGGAC 58.410 50.000 0.00 0.00 0.00 4.46
4604 6325 2.089201 TGCATGATCTTGTTGGAGCAG 58.911 47.619 10.05 0.00 35.07 4.24
4606 6327 2.097142 GCATGATCTTGTTGGAGCAGTC 59.903 50.000 10.05 0.00 35.07 3.51
4669 6390 5.351740 GGCTAAGAAGGTACATTCTCAACAC 59.648 44.000 21.98 10.65 38.59 3.32
4769 6490 2.892334 TTGAAAGAGTGTGCGCGCC 61.892 57.895 30.77 20.33 0.00 6.53
4770 6491 3.345808 GAAAGAGTGTGCGCGCCA 61.346 61.111 30.77 22.86 0.00 5.69
4811 6532 4.591202 GTTTGACTATGTGATGAATGGCG 58.409 43.478 0.00 0.00 0.00 5.69
4840 6561 2.972713 TGAACAAGTTCCCTCTAGCACT 59.027 45.455 10.19 0.00 38.77 4.40
4845 6566 4.042187 ACAAGTTCCCTCTAGCACTCATTT 59.958 41.667 0.00 0.00 0.00 2.32
4870 6594 3.952323 CTCTGGATGCATTCATTCTTGGT 59.048 43.478 8.48 0.00 31.96 3.67
5052 6776 3.070018 CACTGAACCATCTCACCAGAAC 58.930 50.000 0.00 0.00 30.24 3.01
5086 6810 2.668457 GGTGATCAGAGCACAGTTAACG 59.332 50.000 20.21 0.00 37.99 3.18
5170 7336 0.877743 GGACTCCTTGCAGTTTCAGC 59.122 55.000 0.00 0.00 0.00 4.26
5439 7639 1.180029 GTCATGCAGGCATCAACCTT 58.820 50.000 3.30 0.00 38.26 3.50
5455 7655 2.024414 ACCTTTGTTCAGCACAACCTC 58.976 47.619 0.00 0.00 45.54 3.85
5470 7670 3.763897 ACAACCTCCTGCCACAATTATTC 59.236 43.478 0.00 0.00 0.00 1.75
5472 7672 1.949525 CCTCCTGCCACAATTATTCGG 59.050 52.381 0.00 0.00 0.00 4.30
5479 7679 2.542595 GCCACAATTATTCGGTCCTACG 59.457 50.000 0.00 0.00 0.00 3.51
5713 7914 7.670979 TGTCACTATAACTTAGGTGTCAGGTTA 59.329 37.037 0.00 0.00 0.00 2.85
5769 7973 7.814107 CAAGCATTGTAAACTGTATGTTTGGAT 59.186 33.333 8.38 0.00 43.21 3.41
5906 8112 4.114794 GCCCACTGATGTTTAATTGATGC 58.885 43.478 0.00 0.00 0.00 3.91
6007 8213 7.323656 CAGAACGTAAAATTTTCTCACATGGTC 59.676 37.037 6.72 3.42 0.00 4.02
6008 8214 6.627395 ACGTAAAATTTTCTCACATGGTCA 57.373 33.333 6.72 0.00 0.00 4.02
6009 8215 6.435428 ACGTAAAATTTTCTCACATGGTCAC 58.565 36.000 6.72 0.00 0.00 3.67
6010 8216 5.856455 CGTAAAATTTTCTCACATGGTCACC 59.144 40.000 6.72 0.00 0.00 4.02
6011 8217 4.503741 AAATTTTCTCACATGGTCACCG 57.496 40.909 0.00 0.00 0.00 4.94
6012 8218 2.631160 TTTTCTCACATGGTCACCGT 57.369 45.000 0.00 0.00 0.00 4.83
6013 8219 2.631160 TTTCTCACATGGTCACCGTT 57.369 45.000 0.00 0.00 0.00 4.44
6014 8220 2.631160 TTCTCACATGGTCACCGTTT 57.369 45.000 0.00 0.00 0.00 3.60
6015 8221 1.877637 TCTCACATGGTCACCGTTTG 58.122 50.000 0.00 0.00 0.00 2.93
6016 8222 0.874390 CTCACATGGTCACCGTTTGG 59.126 55.000 2.22 0.00 42.84 3.28
6017 8223 0.536233 TCACATGGTCACCGTTTGGG 60.536 55.000 2.22 0.00 40.75 4.12
6086 8312 6.206395 TGTCTCAATTCAAAGAGTGCAAAA 57.794 33.333 0.00 0.00 33.63 2.44
6271 8774 2.711542 GGTTCAATCTAGGTGTGTGGG 58.288 52.381 0.00 0.00 0.00 4.61
6294 8797 1.141881 GGTGGCGAGACGATGTCAT 59.858 57.895 0.00 0.00 34.60 3.06
6300 8803 0.873312 CGAGACGATGTCATGCCTGG 60.873 60.000 0.00 0.00 34.60 4.45
6315 8819 4.980592 TGGCAGGAGGCTCCACCA 62.981 66.667 32.88 32.88 41.11 4.17
6361 8866 1.270518 CCCCAACTGTCAGTGAGTGAG 60.271 57.143 6.18 0.00 35.13 3.51
6415 8920 2.632377 CTGTGGAGTGAGTGTGTGTTT 58.368 47.619 0.00 0.00 0.00 2.83
6416 8921 2.352651 CTGTGGAGTGAGTGTGTGTTTG 59.647 50.000 0.00 0.00 0.00 2.93
6417 8922 2.290008 TGTGGAGTGAGTGTGTGTTTGT 60.290 45.455 0.00 0.00 0.00 2.83
6418 8923 2.747446 GTGGAGTGAGTGTGTGTTTGTT 59.253 45.455 0.00 0.00 0.00 2.83
6419 8924 3.936453 GTGGAGTGAGTGTGTGTTTGTTA 59.064 43.478 0.00 0.00 0.00 2.41
6420 8925 4.034048 GTGGAGTGAGTGTGTGTTTGTTAG 59.966 45.833 0.00 0.00 0.00 2.34
6421 8926 3.560068 GGAGTGAGTGTGTGTTTGTTAGG 59.440 47.826 0.00 0.00 0.00 2.69
6422 8927 4.439057 GAGTGAGTGTGTGTTTGTTAGGA 58.561 43.478 0.00 0.00 0.00 2.94
6423 8928 4.189231 AGTGAGTGTGTGTTTGTTAGGAC 58.811 43.478 0.00 0.00 0.00 3.85
6424 8929 3.936453 GTGAGTGTGTGTTTGTTAGGACA 59.064 43.478 0.00 0.00 0.00 4.02
6425 8930 4.393680 GTGAGTGTGTGTTTGTTAGGACAA 59.606 41.667 0.00 0.00 43.73 3.18
6426 8931 4.634004 TGAGTGTGTGTTTGTTAGGACAAG 59.366 41.667 0.00 0.00 45.80 3.16
6427 8932 3.945285 AGTGTGTGTTTGTTAGGACAAGG 59.055 43.478 0.00 0.00 45.80 3.61
6428 8933 3.942748 GTGTGTGTTTGTTAGGACAAGGA 59.057 43.478 0.00 0.00 45.80 3.36
6429 8934 4.578928 GTGTGTGTTTGTTAGGACAAGGAT 59.421 41.667 0.00 0.00 45.80 3.24
6430 8935 4.578516 TGTGTGTTTGTTAGGACAAGGATG 59.421 41.667 0.00 0.00 45.80 3.51
6431 8936 4.023193 GTGTGTTTGTTAGGACAAGGATGG 60.023 45.833 0.00 0.00 45.80 3.51
6432 8937 3.506067 GTGTTTGTTAGGACAAGGATGGG 59.494 47.826 0.00 0.00 45.80 4.00
6433 8938 3.396276 TGTTTGTTAGGACAAGGATGGGA 59.604 43.478 0.00 0.00 45.80 4.37
6434 8939 4.010349 GTTTGTTAGGACAAGGATGGGAG 58.990 47.826 0.00 0.00 45.80 4.30
6435 8940 2.196595 TGTTAGGACAAGGATGGGAGG 58.803 52.381 0.00 0.00 31.49 4.30
6436 8941 2.225779 TGTTAGGACAAGGATGGGAGGA 60.226 50.000 0.00 0.00 31.49 3.71
6437 8942 2.844348 GTTAGGACAAGGATGGGAGGAA 59.156 50.000 0.00 0.00 0.00 3.36
6438 8943 2.293598 AGGACAAGGATGGGAGGAAT 57.706 50.000 0.00 0.00 0.00 3.01
6439 8944 2.131023 AGGACAAGGATGGGAGGAATC 58.869 52.381 0.00 0.00 0.00 2.52
6440 8945 1.202698 GGACAAGGATGGGAGGAATCG 60.203 57.143 0.00 0.00 0.00 3.34
6441 8946 1.762957 GACAAGGATGGGAGGAATCGA 59.237 52.381 0.00 0.00 0.00 3.59
6442 8947 2.170607 GACAAGGATGGGAGGAATCGAA 59.829 50.000 0.00 0.00 0.00 3.71
6443 8948 2.092914 ACAAGGATGGGAGGAATCGAAC 60.093 50.000 0.00 0.00 0.00 3.95
6444 8949 2.171448 CAAGGATGGGAGGAATCGAACT 59.829 50.000 0.00 0.00 0.00 3.01
6445 8950 3.330126 AGGATGGGAGGAATCGAACTA 57.670 47.619 0.00 0.00 0.00 2.24
6446 8951 3.863086 AGGATGGGAGGAATCGAACTAT 58.137 45.455 0.00 0.00 0.00 2.12
6447 8952 4.235372 AGGATGGGAGGAATCGAACTATT 58.765 43.478 0.00 0.00 0.00 1.73
6448 8953 4.040952 AGGATGGGAGGAATCGAACTATTG 59.959 45.833 0.00 0.00 0.00 1.90
6449 8954 3.194005 TGGGAGGAATCGAACTATTGC 57.806 47.619 0.00 0.00 0.00 3.56
6450 8955 2.158813 TGGGAGGAATCGAACTATTGCC 60.159 50.000 0.00 0.00 0.00 4.52
6451 8956 2.104963 GGGAGGAATCGAACTATTGCCT 59.895 50.000 0.00 0.00 0.00 4.75
6452 8957 3.433740 GGGAGGAATCGAACTATTGCCTT 60.434 47.826 0.00 0.00 0.00 4.35
6453 8958 4.202326 GGGAGGAATCGAACTATTGCCTTA 60.202 45.833 0.00 0.00 0.00 2.69
6454 8959 5.365619 GGAGGAATCGAACTATTGCCTTAA 58.634 41.667 0.00 0.00 0.00 1.85
6455 8960 5.467063 GGAGGAATCGAACTATTGCCTTAAG 59.533 44.000 0.00 0.00 0.00 1.85
6456 8961 5.990668 AGGAATCGAACTATTGCCTTAAGT 58.009 37.500 0.97 0.00 0.00 2.24
6457 8962 7.120923 AGGAATCGAACTATTGCCTTAAGTA 57.879 36.000 0.97 0.00 0.00 2.24
6458 8963 7.736893 AGGAATCGAACTATTGCCTTAAGTAT 58.263 34.615 0.97 0.00 0.00 2.12
6459 8964 7.657761 AGGAATCGAACTATTGCCTTAAGTATG 59.342 37.037 0.97 0.00 0.00 2.39
6460 8965 7.095187 GGAATCGAACTATTGCCTTAAGTATGG 60.095 40.741 0.97 0.00 0.00 2.74
6461 8966 6.229936 TCGAACTATTGCCTTAAGTATGGT 57.770 37.500 0.97 0.00 0.00 3.55
6462 8967 6.646267 TCGAACTATTGCCTTAAGTATGGTT 58.354 36.000 0.97 6.37 0.00 3.67
6463 8968 6.759827 TCGAACTATTGCCTTAAGTATGGTTC 59.240 38.462 18.46 18.46 36.04 3.62
6464 8969 6.761714 CGAACTATTGCCTTAAGTATGGTTCT 59.238 38.462 21.98 4.72 36.75 3.01
6465 8970 7.042658 CGAACTATTGCCTTAAGTATGGTTCTC 60.043 40.741 21.98 9.79 36.75 2.87
6466 8971 7.195374 ACTATTGCCTTAAGTATGGTTCTCA 57.805 36.000 0.97 0.00 0.00 3.27
6467 8972 7.275920 ACTATTGCCTTAAGTATGGTTCTCAG 58.724 38.462 0.97 0.00 0.00 3.35
6468 8973 5.499004 TTGCCTTAAGTATGGTTCTCAGT 57.501 39.130 0.97 0.00 0.00 3.41
6469 8974 5.086104 TGCCTTAAGTATGGTTCTCAGTC 57.914 43.478 0.97 0.00 0.00 3.51
6470 8975 4.777896 TGCCTTAAGTATGGTTCTCAGTCT 59.222 41.667 0.97 0.00 0.00 3.24
6471 8976 5.105310 TGCCTTAAGTATGGTTCTCAGTCTC 60.105 44.000 0.97 0.00 0.00 3.36
6472 8977 5.583495 CCTTAAGTATGGTTCTCAGTCTCG 58.417 45.833 0.97 0.00 0.00 4.04
6473 8978 5.357314 CCTTAAGTATGGTTCTCAGTCTCGA 59.643 44.000 0.97 0.00 0.00 4.04
6474 8979 6.039941 CCTTAAGTATGGTTCTCAGTCTCGAT 59.960 42.308 0.97 0.00 0.00 3.59
6475 8980 5.923733 AAGTATGGTTCTCAGTCTCGATT 57.076 39.130 0.00 0.00 0.00 3.34
6476 8981 8.515695 TTAAGTATGGTTCTCAGTCTCGATTA 57.484 34.615 0.00 0.00 0.00 1.75
6477 8982 6.380095 AGTATGGTTCTCAGTCTCGATTAC 57.620 41.667 0.00 0.00 0.00 1.89
6478 8983 5.886474 AGTATGGTTCTCAGTCTCGATTACA 59.114 40.000 0.00 0.00 0.00 2.41
6479 8984 5.661056 ATGGTTCTCAGTCTCGATTACAA 57.339 39.130 0.00 0.00 0.00 2.41
6480 8985 5.060662 TGGTTCTCAGTCTCGATTACAAG 57.939 43.478 0.00 0.00 0.00 3.16
6481 8986 3.860536 GGTTCTCAGTCTCGATTACAAGC 59.139 47.826 0.00 0.00 0.00 4.01
6482 8987 4.381079 GGTTCTCAGTCTCGATTACAAGCT 60.381 45.833 0.00 0.00 0.00 3.74
6483 8988 4.362932 TCTCAGTCTCGATTACAAGCTG 57.637 45.455 0.00 0.00 0.00 4.24
6484 8989 3.129462 TCTCAGTCTCGATTACAAGCTGG 59.871 47.826 0.00 0.00 0.00 4.85
6485 8990 2.826128 TCAGTCTCGATTACAAGCTGGT 59.174 45.455 0.00 0.00 0.00 4.00
6486 8991 3.258372 TCAGTCTCGATTACAAGCTGGTT 59.742 43.478 0.00 0.00 0.00 3.67
6487 8992 4.461431 TCAGTCTCGATTACAAGCTGGTTA 59.539 41.667 0.00 0.00 0.00 2.85
6488 8993 4.563184 CAGTCTCGATTACAAGCTGGTTAC 59.437 45.833 0.00 0.00 0.00 2.50
6489 8994 4.219944 AGTCTCGATTACAAGCTGGTTACA 59.780 41.667 0.00 0.00 0.00 2.41
6490 8995 4.326548 GTCTCGATTACAAGCTGGTTACAC 59.673 45.833 0.00 0.00 0.00 2.90
6491 8996 3.247442 TCGATTACAAGCTGGTTACACG 58.753 45.455 0.00 0.57 0.00 4.49
6492 8997 3.057386 TCGATTACAAGCTGGTTACACGA 60.057 43.478 0.00 3.17 0.00 4.35
6493 8998 3.676172 CGATTACAAGCTGGTTACACGAA 59.324 43.478 0.00 0.00 0.00 3.85
6494 8999 4.328983 CGATTACAAGCTGGTTACACGAAT 59.671 41.667 0.00 0.00 0.00 3.34
6495 9000 5.545658 ATTACAAGCTGGTTACACGAATG 57.454 39.130 0.00 0.00 0.00 2.67
6496 9001 2.151202 ACAAGCTGGTTACACGAATGG 58.849 47.619 0.00 0.00 0.00 3.16
6497 9002 2.224426 ACAAGCTGGTTACACGAATGGA 60.224 45.455 0.00 0.00 0.00 3.41
6498 9003 2.811431 CAAGCTGGTTACACGAATGGAA 59.189 45.455 0.00 0.00 0.00 3.53
6499 9004 2.699954 AGCTGGTTACACGAATGGAAG 58.300 47.619 0.00 0.00 0.00 3.46
6500 9005 2.301870 AGCTGGTTACACGAATGGAAGA 59.698 45.455 0.00 0.00 0.00 2.87
6501 9006 2.673368 GCTGGTTACACGAATGGAAGAG 59.327 50.000 0.00 0.00 0.00 2.85
6502 9007 3.262420 CTGGTTACACGAATGGAAGAGG 58.738 50.000 0.00 0.00 0.00 3.69
6503 9008 2.901192 TGGTTACACGAATGGAAGAGGA 59.099 45.455 0.00 0.00 0.00 3.71
6504 9009 3.325425 TGGTTACACGAATGGAAGAGGAA 59.675 43.478 0.00 0.00 0.00 3.36
6505 9010 3.683340 GGTTACACGAATGGAAGAGGAAC 59.317 47.826 0.00 0.00 0.00 3.62
6506 9011 2.080286 ACACGAATGGAAGAGGAACG 57.920 50.000 0.00 0.00 0.00 3.95
6507 9012 1.616865 ACACGAATGGAAGAGGAACGA 59.383 47.619 0.00 0.00 0.00 3.85
6508 9013 2.233922 ACACGAATGGAAGAGGAACGAT 59.766 45.455 0.00 0.00 0.00 3.73
6509 9014 3.446161 ACACGAATGGAAGAGGAACGATA 59.554 43.478 0.00 0.00 0.00 2.92
6510 9015 4.045104 CACGAATGGAAGAGGAACGATAG 58.955 47.826 0.00 0.00 46.19 2.08
6511 9016 3.068307 ACGAATGGAAGAGGAACGATAGG 59.932 47.826 0.00 0.00 43.77 2.57
6512 9017 3.318275 CGAATGGAAGAGGAACGATAGGA 59.682 47.826 0.00 0.00 43.77 2.94
6513 9018 4.202121 CGAATGGAAGAGGAACGATAGGAA 60.202 45.833 0.00 0.00 43.77 3.36
6514 9019 5.671493 GAATGGAAGAGGAACGATAGGAAA 58.329 41.667 0.00 0.00 43.77 3.13
6515 9020 4.467198 TGGAAGAGGAACGATAGGAAAC 57.533 45.455 0.00 0.00 43.77 2.78
6528 9033 2.881111 AGGAAACTAGGGTTCTTGCC 57.119 50.000 7.98 0.00 40.61 4.52
6529 9034 1.003233 AGGAAACTAGGGTTCTTGCCG 59.997 52.381 7.98 0.00 40.61 5.69
6530 9035 0.803117 GAAACTAGGGTTCTTGCCGC 59.197 55.000 0.00 0.00 34.14 6.53
6531 9036 0.608308 AAACTAGGGTTCTTGCCGCC 60.608 55.000 0.00 0.00 34.14 6.13
6532 9037 2.511600 CTAGGGTTCTTGCCGCCG 60.512 66.667 0.00 0.00 0.00 6.46
6533 9038 4.770874 TAGGGTTCTTGCCGCCGC 62.771 66.667 0.00 0.00 0.00 6.53
6550 9055 3.610669 CCGAGCCGGGATCCTCTG 61.611 72.222 12.58 1.84 44.15 3.35
6551 9056 3.610669 CGAGCCGGGATCCTCTGG 61.611 72.222 12.58 12.39 36.28 3.86
6552 9057 2.123251 GAGCCGGGATCCTCTGGA 60.123 66.667 18.62 0.00 35.18 3.86
6553 9058 1.535202 GAGCCGGGATCCTCTGGAT 60.535 63.158 18.62 13.85 46.28 3.41
6554 9059 1.825281 GAGCCGGGATCCTCTGGATG 61.825 65.000 18.62 0.34 43.27 3.51
6561 9066 2.831565 GGATCCTCTGGATGCCTATCT 58.168 52.381 3.84 0.00 43.27 1.98
6562 9067 2.765699 GGATCCTCTGGATGCCTATCTC 59.234 54.545 3.84 0.00 43.27 2.75
6563 9068 2.317371 TCCTCTGGATGCCTATCTCC 57.683 55.000 0.00 0.00 33.68 3.71
6564 9069 1.505098 TCCTCTGGATGCCTATCTCCA 59.495 52.381 0.00 0.00 39.23 3.86
6565 9070 2.113233 TCCTCTGGATGCCTATCTCCAT 59.887 50.000 0.00 0.00 40.66 3.41
6566 9071 2.500910 CCTCTGGATGCCTATCTCCATC 59.499 54.545 0.00 0.00 40.66 3.51
6567 9072 3.171528 CTCTGGATGCCTATCTCCATCA 58.828 50.000 0.00 0.00 40.66 3.07
6568 9073 3.171528 TCTGGATGCCTATCTCCATCAG 58.828 50.000 0.00 0.00 40.66 2.90
6569 9074 1.627329 TGGATGCCTATCTCCATCAGC 59.373 52.381 0.00 0.00 39.61 4.26
6570 9075 1.065564 GGATGCCTATCTCCATCAGCC 60.066 57.143 0.00 0.00 39.61 4.85
6571 9076 1.907936 GATGCCTATCTCCATCAGCCT 59.092 52.381 0.00 0.00 38.15 4.58
6572 9077 1.054231 TGCCTATCTCCATCAGCCTG 58.946 55.000 0.00 0.00 0.00 4.85
6573 9078 0.321475 GCCTATCTCCATCAGCCTGC 60.321 60.000 0.00 0.00 0.00 4.85
6574 9079 0.324285 CCTATCTCCATCAGCCTGCC 59.676 60.000 0.00 0.00 0.00 4.85
6575 9080 1.350071 CTATCTCCATCAGCCTGCCT 58.650 55.000 0.00 0.00 0.00 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.293368 AGAAGATGGGGGAGAAACAAAGAT 59.707 41.667 0.00 0.00 0.00 2.40
1 2 3.657727 AGAAGATGGGGGAGAAACAAAGA 59.342 43.478 0.00 0.00 0.00 2.52
2 3 4.039603 AGAAGATGGGGGAGAAACAAAG 57.960 45.455 0.00 0.00 0.00 2.77
3 4 4.407365 GAAGAAGATGGGGGAGAAACAAA 58.593 43.478 0.00 0.00 0.00 2.83
4 5 3.245264 GGAAGAAGATGGGGGAGAAACAA 60.245 47.826 0.00 0.00 0.00 2.83
5 6 2.308866 GGAAGAAGATGGGGGAGAAACA 59.691 50.000 0.00 0.00 0.00 2.83
6 7 2.357257 GGGAAGAAGATGGGGGAGAAAC 60.357 54.545 0.00 0.00 0.00 2.78
37 38 1.153086 CTGCGGGGAGGAGGAAATG 60.153 63.158 0.00 0.00 34.34 2.32
38 39 3.049080 GCTGCGGGGAGGAGGAAAT 62.049 63.158 0.00 0.00 38.88 2.17
39 40 3.717294 GCTGCGGGGAGGAGGAAA 61.717 66.667 0.00 0.00 38.88 3.13
64 65 2.512896 GAGGCAAGCGGATGGGAT 59.487 61.111 0.00 0.00 0.00 3.85
65 66 3.797353 GGAGGCAAGCGGATGGGA 61.797 66.667 0.00 0.00 0.00 4.37
74 75 2.034687 CACAGGGGTGGAGGCAAG 59.965 66.667 0.00 0.00 41.45 4.01
103 104 3.419759 CAAGGCGGTGCACGGTAC 61.420 66.667 23.39 16.95 44.51 3.34
156 170 1.743321 CTCAGAGGGATGGTCGGAGC 61.743 65.000 0.00 0.00 30.97 4.70
158 172 1.758514 GCTCAGAGGGATGGTCGGA 60.759 63.158 0.00 0.00 0.00 4.55
162 176 2.367512 GGGGCTCAGAGGGATGGT 60.368 66.667 0.00 0.00 0.00 3.55
179 193 1.657181 GTTTTGAACAGGTGGCGCG 60.657 57.895 0.00 0.00 0.00 6.86
182 196 1.398692 TGGAGTTTTGAACAGGTGGC 58.601 50.000 0.00 0.00 0.00 5.01
186 200 4.240096 GCATCATTGGAGTTTTGAACAGG 58.760 43.478 0.00 0.00 0.00 4.00
189 203 3.259123 AGGGCATCATTGGAGTTTTGAAC 59.741 43.478 0.00 0.00 0.00 3.18
191 205 2.827322 CAGGGCATCATTGGAGTTTTGA 59.173 45.455 0.00 0.00 0.00 2.69
192 206 2.675889 GCAGGGCATCATTGGAGTTTTG 60.676 50.000 0.00 0.00 0.00 2.44
202 216 2.311070 TGGAGGTGCAGGGCATCAT 61.311 57.895 4.10 0.00 42.90 2.45
203 217 2.934932 TGGAGGTGCAGGGCATCA 60.935 61.111 4.10 0.00 42.90 3.07
248 262 8.398743 AGTCTCATTATTTTTCTTAGGGGGAAA 58.601 33.333 0.00 0.00 0.00 3.13
263 277 6.153924 AGGGGGAAGTCATAGTCTCATTATT 58.846 40.000 0.00 0.00 0.00 1.40
272 286 6.547396 TCTATCTTAGGGGGAAGTCATAGT 57.453 41.667 0.00 0.00 0.00 2.12
325 340 2.356278 GCATGAGTTGGGAGGCCA 59.644 61.111 5.01 0.00 0.00 5.36
335 352 1.888436 TTCTTCCGGAGCGCATGAGT 61.888 55.000 11.47 0.00 0.00 3.41
381 402 8.428852 AGGTTTTGCTATTTTTCAGGTACAAAT 58.571 29.630 0.00 0.00 0.00 2.32
383 404 7.286775 AGAGGTTTTGCTATTTTTCAGGTACAA 59.713 33.333 0.00 0.00 0.00 2.41
407 428 5.241506 CCTTGGTTGCAACATCTCTTTTAGA 59.758 40.000 29.55 1.99 39.02 2.10
416 437 2.742774 GTGTTCCTTGGTTGCAACATC 58.257 47.619 29.55 14.69 31.65 3.06
422 443 2.793278 AATTCGTGTTCCTTGGTTGC 57.207 45.000 0.00 0.00 0.00 4.17
443 464 6.838612 TCTTCCCTTTTTCTCCTTTTTGATGA 59.161 34.615 0.00 0.00 0.00 2.92
462 484 2.747989 CGCCCTTAAGTTTCTTCTTCCC 59.252 50.000 0.97 0.00 0.00 3.97
590 612 2.622629 CTGGACGCGCATGATTCG 59.377 61.111 5.73 0.00 0.00 3.34
617 643 1.499049 GGAGTCTCGCTTGTTTCGTT 58.501 50.000 0.00 0.00 0.00 3.85
764 790 1.874345 TTTCGCTCTCCACCGACTCC 61.874 60.000 0.00 0.00 32.60 3.85
765 791 0.733223 GTTTCGCTCTCCACCGACTC 60.733 60.000 0.00 0.00 32.60 3.36
766 792 1.289380 GTTTCGCTCTCCACCGACT 59.711 57.895 0.00 0.00 32.60 4.18
767 793 0.599204 TTGTTTCGCTCTCCACCGAC 60.599 55.000 0.00 0.00 32.60 4.79
768 794 0.320374 ATTGTTTCGCTCTCCACCGA 59.680 50.000 0.00 0.00 0.00 4.69
769 795 1.156736 AATTGTTTCGCTCTCCACCG 58.843 50.000 0.00 0.00 0.00 4.94
888 915 2.103263 GGTAATGGGCTAGTCTCCTGTG 59.897 54.545 0.00 0.00 0.00 3.66
949 976 2.102588 ACACACACTCTCTGGTACCAAC 59.897 50.000 17.11 0.00 0.00 3.77
1155 1182 1.618640 GAAAGAGCACGACGAGCACC 61.619 60.000 19.27 10.28 0.00 5.01
1446 1477 6.966021 TGAACCTATACAAGCACAAAGAAAC 58.034 36.000 0.00 0.00 0.00 2.78
1518 1563 6.523840 AGAGCATAACAGAGAAATGATCCTC 58.476 40.000 0.00 0.00 36.86 3.71
1550 1595 7.542890 TGCCATATCTTTTGAAGCGAAAATTA 58.457 30.769 0.00 0.00 0.00 1.40
1559 1604 2.684881 ACGGCTGCCATATCTTTTGAAG 59.315 45.455 20.29 0.00 0.00 3.02
1592 1637 7.549488 AGCGTAATTAAACAGTTGCTAGAAGAT 59.451 33.333 0.00 0.00 0.00 2.40
1621 1666 1.268352 CCGAGCACTGCTAGACCTATC 59.732 57.143 12.36 0.00 39.88 2.08
1637 1682 5.455056 AGACTATTACAGCATAACCCGAG 57.545 43.478 0.00 0.00 0.00 4.63
1642 1687 8.138712 AGCAAGACTAGACTATTACAGCATAAC 58.861 37.037 0.00 0.00 0.00 1.89
1694 1739 2.030274 TCATCGACACGTATGCTATGGG 60.030 50.000 0.00 0.00 0.00 4.00
1695 1740 2.980476 GTCATCGACACGTATGCTATGG 59.020 50.000 0.00 0.00 32.09 2.74
1696 1741 2.652172 CGTCATCGACACGTATGCTATG 59.348 50.000 9.98 0.00 39.71 2.23
1697 1742 2.546789 TCGTCATCGACACGTATGCTAT 59.453 45.455 16.09 0.00 41.35 2.97
1698 1743 1.935199 TCGTCATCGACACGTATGCTA 59.065 47.619 16.09 0.00 41.35 3.49
1699 1744 0.730840 TCGTCATCGACACGTATGCT 59.269 50.000 16.09 0.00 41.35 3.79
1700 1745 1.113253 CTCGTCATCGACACGTATGC 58.887 55.000 16.09 0.00 41.35 3.14
1701 1746 1.113253 GCTCGTCATCGACACGTATG 58.887 55.000 16.09 10.13 41.35 2.39
1702 1747 0.315951 CGCTCGTCATCGACACGTAT 60.316 55.000 16.09 0.00 41.35 3.06
1703 1748 1.059838 CGCTCGTCATCGACACGTA 59.940 57.895 16.09 5.17 41.35 3.57
1704 1749 2.202311 CGCTCGTCATCGACACGT 60.202 61.111 16.09 0.00 41.35 4.49
1705 1750 2.202311 ACGCTCGTCATCGACACG 60.202 61.111 11.62 11.62 41.35 4.49
1706 1751 1.442184 ACACGCTCGTCATCGACAC 60.442 57.895 0.00 0.00 41.35 3.67
1707 1752 1.442017 CACACGCTCGTCATCGACA 60.442 57.895 0.00 0.00 41.35 4.35
1708 1753 2.778997 GCACACGCTCGTCATCGAC 61.779 63.158 0.00 0.00 41.35 4.20
1709 1754 2.504026 GCACACGCTCGTCATCGA 60.504 61.111 0.00 0.00 44.12 3.59
1710 1755 2.782045 CTGCACACGCTCGTCATCG 61.782 63.158 0.00 0.00 39.64 3.84
1711 1756 0.456142 TACTGCACACGCTCGTCATC 60.456 55.000 0.00 0.00 39.64 2.92
1712 1757 0.456824 CTACTGCACACGCTCGTCAT 60.457 55.000 0.00 0.00 39.64 3.06
1713 1758 1.081442 CTACTGCACACGCTCGTCA 60.081 57.895 0.00 0.00 39.64 4.35
1714 1759 1.801913 CCTACTGCACACGCTCGTC 60.802 63.158 0.00 0.00 39.64 4.20
1715 1760 2.083835 AACCTACTGCACACGCTCGT 62.084 55.000 0.00 0.00 39.64 4.18
1730 1775 6.031492 GCTCAAGCACTACTAGGAAAAACCT 61.031 44.000 0.00 0.00 45.75 3.50
1733 1778 5.228945 AGCTCAAGCACTACTAGGAAAAA 57.771 39.130 4.59 0.00 45.16 1.94
1734 1779 4.618460 CGAGCTCAAGCACTACTAGGAAAA 60.618 45.833 15.40 0.00 45.16 2.29
1750 1795 1.056660 AGAAGGGGAAAACGAGCTCA 58.943 50.000 15.40 0.00 0.00 4.26
1758 1803 3.245622 GGAGATGGGAAAGAAGGGGAAAA 60.246 47.826 0.00 0.00 0.00 2.29
1764 1809 7.578203 AGTTTAATAGGAGATGGGAAAGAAGG 58.422 38.462 0.00 0.00 0.00 3.46
1849 1897 9.260002 CAAGTCCATAATTAAACACTTGCTTTT 57.740 29.630 15.40 0.00 35.66 2.27
1851 1899 8.082242 GTCAAGTCCATAATTAAACACTTGCTT 58.918 33.333 19.47 4.46 40.27 3.91
1902 1950 3.821600 TGCCAAAGCTAAATGGTACGAAA 59.178 39.130 13.01 0.00 40.80 3.46
1905 1953 3.840890 TTGCCAAAGCTAAATGGTACG 57.159 42.857 13.01 0.00 40.80 3.67
1906 1954 8.541133 TTTTTATTGCCAAAGCTAAATGGTAC 57.459 30.769 13.01 0.00 40.80 3.34
1908 1956 9.904198 ATATTTTTATTGCCAAAGCTAAATGGT 57.096 25.926 13.01 0.00 40.80 3.55
1979 2028 9.754382 AATAGATGGTTGAACATATTTCAATGC 57.246 29.630 12.88 5.22 40.12 3.56
2012 2064 7.701445 ACATTCTCTTTGAAAGACAAGAACTG 58.299 34.615 3.02 8.95 39.77 3.16
2105 2157 8.898761 TCAAAGTAATATTACATGTGGCGAAAT 58.101 29.630 24.05 2.15 36.12 2.17
2106 2158 8.270080 TCAAAGTAATATTACATGTGGCGAAA 57.730 30.769 24.05 0.00 36.12 3.46
2107 2159 7.851387 TCAAAGTAATATTACATGTGGCGAA 57.149 32.000 24.05 0.00 36.12 4.70
2108 2160 9.549078 TTATCAAAGTAATATTACATGTGGCGA 57.451 29.630 24.05 12.18 36.12 5.54
2211 2264 6.698380 TGAACTTTACCATCTCTAGTGGAAC 58.302 40.000 4.93 0.00 39.12 3.62
2388 2442 3.961477 TGTTGATTTTCAGTGTCACCG 57.039 42.857 0.00 0.00 0.00 4.94
2396 2450 6.687958 GTGCCATTTTGTTTGTTGATTTTCAG 59.312 34.615 0.00 0.00 0.00 3.02
2591 2655 2.618053 CTAACAAGAGGGGTTAGTGCG 58.382 52.381 0.00 0.00 41.63 5.34
2592 2656 2.940083 GCCTAACAAGAGGGGTTAGTGC 60.940 54.545 10.38 9.49 43.86 4.40
2598 2662 0.475828 ACCAGCCTAACAAGAGGGGT 60.476 55.000 0.00 0.00 37.06 4.95
2928 3061 9.189156 TGCTAAGACCAAAGATAGCAAAATTAT 57.811 29.630 4.01 0.00 45.51 1.28
2974 3107 0.034670 GGCTCATGCTCTCCACCTTT 60.035 55.000 0.00 0.00 39.59 3.11
3079 3311 6.159293 TGCAATTTTTACATGGCGAATACAA 58.841 32.000 0.00 0.00 0.00 2.41
3086 3318 4.484236 TCTTCTGCAATTTTTACATGGCG 58.516 39.130 0.00 0.00 0.00 5.69
3088 3320 8.231837 CCAATTTCTTCTGCAATTTTTACATGG 58.768 33.333 0.00 0.00 0.00 3.66
3167 3399 5.822519 AGGAAACTATCGAGCATTGCAATTA 59.177 36.000 9.83 0.00 40.61 1.40
3264 3500 8.990693 AGTGGGGATCAACTATTTAGGTATAT 57.009 34.615 0.00 0.00 0.00 0.86
3265 3501 9.901651 TTAGTGGGGATCAACTATTTAGGTATA 57.098 33.333 0.00 0.00 0.00 1.47
3266 3502 8.657712 GTTAGTGGGGATCAACTATTTAGGTAT 58.342 37.037 0.00 0.00 0.00 2.73
3267 3503 7.847848 AGTTAGTGGGGATCAACTATTTAGGTA 59.152 37.037 0.00 0.00 29.67 3.08
3322 3558 3.267483 CATGCATGATGACACAGTGAGA 58.733 45.455 22.59 0.00 33.31 3.27
3328 3564 2.510928 TTCCCATGCATGATGACACA 57.489 45.000 28.31 6.61 33.31 3.72
3350 3586 5.353938 GCATGGTGCATGTTAAGATGAATT 58.646 37.500 16.31 0.00 44.26 2.17
3444 5125 6.857964 ACAATGCGAGAACTGAAACTAAAATG 59.142 34.615 0.00 0.00 0.00 2.32
3471 5155 6.556212 CAACATCGGATAGGTACTGCTATAG 58.444 44.000 0.00 0.00 41.52 1.31
3472 5156 5.105877 GCAACATCGGATAGGTACTGCTATA 60.106 44.000 0.00 0.00 41.52 1.31
3697 5391 0.103755 TAGCCGCATTGCTCTCAGAG 59.896 55.000 7.12 0.00 41.68 3.35
3753 5447 1.912371 CTTCGAAAGCGGGCCTTCAC 61.912 60.000 0.84 0.00 38.28 3.18
3817 5511 0.902048 CAGTCCAGCTCTCCTGACCA 60.902 60.000 0.00 0.00 44.64 4.02
3847 5541 1.368641 CTTGCGCTATGTGGCTGTTA 58.631 50.000 9.73 0.00 0.00 2.41
3931 5625 3.056891 TGAAGCGGATTTTTCCCAATGAC 60.057 43.478 0.00 0.00 0.00 3.06
4137 5856 9.996554 AAGATTAAAAAGAAAACTGTAATGGGG 57.003 29.630 0.00 0.00 0.00 4.96
4151 5870 8.130307 GCTGAAGCAAACAAAGATTAAAAAGA 57.870 30.769 0.00 0.00 41.59 2.52
4198 5917 5.107182 GCGATACACTTCATCATCCAATCTG 60.107 44.000 0.00 0.00 0.00 2.90
4312 6033 1.803519 GAGCTCGTCTGCGTCCTTG 60.804 63.158 0.00 0.00 39.49 3.61
4331 6052 5.045432 AGGGGAGATTTTATACCGTTTCACA 60.045 40.000 0.00 0.00 0.00 3.58
4338 6059 8.685838 TTGATTTTAGGGGAGATTTTATACCG 57.314 34.615 0.00 0.00 0.00 4.02
4377 6098 9.736023 AAATAGCACAACAACTTCTAAAAAGAG 57.264 29.630 0.00 0.00 0.00 2.85
4474 6195 3.258123 GCTTAACCATTCTTTCCCAAGCA 59.742 43.478 0.00 0.00 37.63 3.91
4528 6249 1.586422 TGCGATATGCTTTGAGCTCC 58.414 50.000 12.15 0.00 46.63 4.70
4548 6269 1.078823 TCACCACAGTCCCCTCTACAT 59.921 52.381 0.00 0.00 0.00 2.29
4560 6281 3.128242 GCAATTGAGGAAGATCACCACAG 59.872 47.826 10.34 2.32 30.68 3.66
4604 6325 7.325097 CCGTGAAATGTAAACACCATAAAAGAC 59.675 37.037 0.00 0.00 0.00 3.01
4606 6327 6.584563 CCCGTGAAATGTAAACACCATAAAAG 59.415 38.462 0.00 0.00 0.00 2.27
4747 6468 0.111089 GCGCACACTCTTTCAACTCG 60.111 55.000 0.30 0.00 0.00 4.18
4769 6490 2.289072 ACGGAAGACTGTCCAACTGATG 60.289 50.000 3.76 0.00 37.56 3.07
4770 6491 1.971357 ACGGAAGACTGTCCAACTGAT 59.029 47.619 3.76 0.00 37.56 2.90
4782 6503 5.168569 TCATCACATAGTCAAACGGAAGAC 58.831 41.667 0.00 0.00 35.02 3.01
4783 6504 5.400066 TCATCACATAGTCAAACGGAAGA 57.600 39.130 0.00 0.00 0.00 2.87
4811 6532 4.019771 AGAGGGAACTTGTTCAGGAAGATC 60.020 45.833 14.38 0.00 44.43 2.75
4840 6561 7.558807 AGAATGAATGCATCCAGAGTAAAATGA 59.441 33.333 0.00 0.00 32.35 2.57
4845 6566 5.591472 CCAAGAATGAATGCATCCAGAGTAA 59.409 40.000 0.00 0.00 32.35 2.24
4870 6594 3.289704 TTGAAGCGCGACATCCGGA 62.290 57.895 12.10 6.61 39.04 5.14
5052 6776 5.804473 GCTCTGATCACCATGAATATACTCG 59.196 44.000 0.00 0.00 0.00 4.18
5086 6810 7.568199 ACTATGTACCTTGGAAATAATGTGC 57.432 36.000 0.00 0.00 0.00 4.57
5170 7336 2.684881 AGGCCAAAATGAGCATAAGTCG 59.315 45.455 5.01 0.00 0.00 4.18
5214 7385 1.008079 GTTGCTGCTGACCAACTGC 60.008 57.895 0.00 0.00 42.47 4.40
5266 7452 3.299340 ACGATTGCTCACTTTCGTAGT 57.701 42.857 0.00 0.00 42.48 2.73
5286 7472 3.753815 TGTTCATGGTTCATGCAGAGAA 58.246 40.909 0.00 0.00 41.18 2.87
5455 7655 1.676006 GGACCGAATAATTGTGGCAGG 59.324 52.381 0.00 0.00 0.00 4.85
5470 7670 0.736325 CTTGGACTTGCGTAGGACCG 60.736 60.000 0.00 0.00 0.00 4.79
5472 7672 2.450609 TTCTTGGACTTGCGTAGGAC 57.549 50.000 0.00 0.00 0.00 3.85
5479 7679 1.000060 TGCATGCTTTCTTGGACTTGC 60.000 47.619 20.33 0.00 34.72 4.01
5676 7876 4.743151 AGTTATAGTGACACACAACACACG 59.257 41.667 8.59 0.00 39.18 4.49
5769 7973 5.022787 AGAATAGGGGCAAGCAATTTTGTA 58.977 37.500 0.00 0.00 0.00 2.41
6007 8213 1.080569 GCTGCAATCCCAAACGGTG 60.081 57.895 0.00 0.00 0.00 4.94
6008 8214 0.899717 ATGCTGCAATCCCAAACGGT 60.900 50.000 6.36 0.00 0.00 4.83
6009 8215 1.102154 TATGCTGCAATCCCAAACGG 58.898 50.000 6.36 0.00 0.00 4.44
6010 8216 1.202290 GGTATGCTGCAATCCCAAACG 60.202 52.381 6.36 0.00 0.00 3.60
6011 8217 1.136891 GGGTATGCTGCAATCCCAAAC 59.863 52.381 28.38 11.35 38.15 2.93
6012 8218 1.484038 GGGTATGCTGCAATCCCAAA 58.516 50.000 28.38 0.00 38.15 3.28
6013 8219 0.396974 GGGGTATGCTGCAATCCCAA 60.397 55.000 31.52 2.43 39.85 4.12
6014 8220 1.229927 GGGGTATGCTGCAATCCCA 59.770 57.895 31.52 7.29 39.85 4.37
6015 8221 1.531602 GGGGGTATGCTGCAATCCC 60.532 63.158 26.64 26.64 37.59 3.85
6016 8222 0.538287 GAGGGGGTATGCTGCAATCC 60.538 60.000 6.36 11.96 0.00 3.01
6017 8223 0.538287 GGAGGGGGTATGCTGCAATC 60.538 60.000 6.36 2.46 0.00 2.67
6086 8312 4.406003 AGAGGAGATGCGTACAGGTTAAAT 59.594 41.667 0.00 0.00 0.00 1.40
6155 8381 3.319198 GGCGAGGGGAACTGGTGA 61.319 66.667 0.00 0.00 0.00 4.02
6158 8384 2.685380 AGAGGCGAGGGGAACTGG 60.685 66.667 0.00 0.00 0.00 4.00
6271 8774 3.774959 ATCGTCTCGCCACCATCGC 62.775 63.158 0.00 0.00 0.00 4.58
6300 8803 4.792804 GCTGGTGGAGCCTCCTGC 62.793 72.222 19.12 19.12 42.54 4.85
6315 8819 1.480137 CCGTCTCCTTCATCTTCTGCT 59.520 52.381 0.00 0.00 0.00 4.24
6324 8828 1.975407 GGTCGTCCCGTCTCCTTCA 60.975 63.158 0.00 0.00 0.00 3.02
6325 8829 2.708865 GGGTCGTCCCGTCTCCTTC 61.709 68.421 0.76 0.00 44.74 3.46
6370 8875 1.406341 GGTACATAGAACAGGCCGCAA 60.406 52.381 0.00 0.00 0.00 4.85
6374 8879 1.141053 CCCAGGTACATAGAACAGGCC 59.859 57.143 0.00 0.00 0.00 5.19
6415 8920 2.196595 CCTCCCATCCTTGTCCTAACA 58.803 52.381 0.00 0.00 0.00 2.41
6416 8921 2.478292 TCCTCCCATCCTTGTCCTAAC 58.522 52.381 0.00 0.00 0.00 2.34
6417 8922 2.961536 TCCTCCCATCCTTGTCCTAA 57.038 50.000 0.00 0.00 0.00 2.69
6418 8923 2.961536 TTCCTCCCATCCTTGTCCTA 57.038 50.000 0.00 0.00 0.00 2.94
6419 8924 2.131023 GATTCCTCCCATCCTTGTCCT 58.869 52.381 0.00 0.00 0.00 3.85
6420 8925 1.202698 CGATTCCTCCCATCCTTGTCC 60.203 57.143 0.00 0.00 0.00 4.02
6421 8926 1.762957 TCGATTCCTCCCATCCTTGTC 59.237 52.381 0.00 0.00 0.00 3.18
6422 8927 1.879575 TCGATTCCTCCCATCCTTGT 58.120 50.000 0.00 0.00 0.00 3.16
6423 8928 2.171448 AGTTCGATTCCTCCCATCCTTG 59.829 50.000 0.00 0.00 0.00 3.61
6424 8929 2.482494 AGTTCGATTCCTCCCATCCTT 58.518 47.619 0.00 0.00 0.00 3.36
6425 8930 2.182516 AGTTCGATTCCTCCCATCCT 57.817 50.000 0.00 0.00 0.00 3.24
6426 8931 4.319177 CAATAGTTCGATTCCTCCCATCC 58.681 47.826 0.00 0.00 0.00 3.51
6427 8932 3.748568 GCAATAGTTCGATTCCTCCCATC 59.251 47.826 0.00 0.00 0.00 3.51
6428 8933 3.496870 GGCAATAGTTCGATTCCTCCCAT 60.497 47.826 0.00 0.00 0.00 4.00
6429 8934 2.158813 GGCAATAGTTCGATTCCTCCCA 60.159 50.000 0.00 0.00 0.00 4.37
6430 8935 2.104963 AGGCAATAGTTCGATTCCTCCC 59.895 50.000 0.00 0.00 0.00 4.30
6431 8936 3.477210 AGGCAATAGTTCGATTCCTCC 57.523 47.619 0.00 0.00 0.00 4.30
6432 8937 6.049790 ACTTAAGGCAATAGTTCGATTCCTC 58.950 40.000 7.53 0.00 0.00 3.71
6433 8938 5.990668 ACTTAAGGCAATAGTTCGATTCCT 58.009 37.500 7.53 0.00 0.00 3.36
6434 8939 7.095187 CCATACTTAAGGCAATAGTTCGATTCC 60.095 40.741 7.53 0.00 0.00 3.01
6435 8940 7.441458 ACCATACTTAAGGCAATAGTTCGATTC 59.559 37.037 7.53 0.00 0.00 2.52
6436 8941 7.280356 ACCATACTTAAGGCAATAGTTCGATT 58.720 34.615 7.53 0.00 0.00 3.34
6437 8942 6.827727 ACCATACTTAAGGCAATAGTTCGAT 58.172 36.000 7.53 0.00 0.00 3.59
6438 8943 6.229936 ACCATACTTAAGGCAATAGTTCGA 57.770 37.500 7.53 0.00 0.00 3.71
6439 8944 6.761714 AGAACCATACTTAAGGCAATAGTTCG 59.238 38.462 7.53 0.00 36.04 3.95
6440 8945 7.769044 TGAGAACCATACTTAAGGCAATAGTTC 59.231 37.037 7.53 11.29 0.00 3.01
6441 8946 7.630082 TGAGAACCATACTTAAGGCAATAGTT 58.370 34.615 7.53 3.29 0.00 2.24
6442 8947 7.092846 ACTGAGAACCATACTTAAGGCAATAGT 60.093 37.037 7.53 0.00 0.00 2.12
6443 8948 7.275920 ACTGAGAACCATACTTAAGGCAATAG 58.724 38.462 7.53 0.00 0.00 1.73
6444 8949 7.125811 AGACTGAGAACCATACTTAAGGCAATA 59.874 37.037 7.53 0.00 0.00 1.90
6445 8950 6.067217 ACTGAGAACCATACTTAAGGCAAT 57.933 37.500 7.53 0.00 0.00 3.56
6446 8951 5.248477 AGACTGAGAACCATACTTAAGGCAA 59.752 40.000 7.53 0.00 0.00 4.52
6447 8952 4.777896 AGACTGAGAACCATACTTAAGGCA 59.222 41.667 7.53 0.00 0.00 4.75
6448 8953 5.346181 AGACTGAGAACCATACTTAAGGC 57.654 43.478 7.53 0.00 0.00 4.35
6449 8954 5.357314 TCGAGACTGAGAACCATACTTAAGG 59.643 44.000 7.53 0.00 0.00 2.69
6450 8955 6.438259 TCGAGACTGAGAACCATACTTAAG 57.562 41.667 0.00 0.00 0.00 1.85
6451 8956 7.406031 AATCGAGACTGAGAACCATACTTAA 57.594 36.000 0.00 0.00 0.00 1.85
6452 8957 7.555195 TGTAATCGAGACTGAGAACCATACTTA 59.445 37.037 0.00 0.00 0.00 2.24
6453 8958 5.923733 AATCGAGACTGAGAACCATACTT 57.076 39.130 0.00 0.00 0.00 2.24
6454 8959 5.886474 TGTAATCGAGACTGAGAACCATACT 59.114 40.000 0.00 0.00 0.00 2.12
6455 8960 6.132791 TGTAATCGAGACTGAGAACCATAC 57.867 41.667 0.00 0.00 0.00 2.39
6456 8961 6.680625 GCTTGTAATCGAGACTGAGAACCATA 60.681 42.308 0.00 0.00 0.00 2.74
6457 8962 5.655488 CTTGTAATCGAGACTGAGAACCAT 58.345 41.667 0.00 0.00 0.00 3.55
6458 8963 4.618460 GCTTGTAATCGAGACTGAGAACCA 60.618 45.833 0.00 0.00 0.00 3.67
6459 8964 3.860536 GCTTGTAATCGAGACTGAGAACC 59.139 47.826 0.00 0.00 0.00 3.62
6460 8965 4.560819 CAGCTTGTAATCGAGACTGAGAAC 59.439 45.833 0.00 0.00 34.35 3.01
6461 8966 4.380973 CCAGCTTGTAATCGAGACTGAGAA 60.381 45.833 0.00 0.00 34.35 2.87
6462 8967 3.129462 CCAGCTTGTAATCGAGACTGAGA 59.871 47.826 0.00 0.00 34.35 3.27
6463 8968 3.119316 ACCAGCTTGTAATCGAGACTGAG 60.119 47.826 0.00 0.00 34.35 3.35
6464 8969 2.826128 ACCAGCTTGTAATCGAGACTGA 59.174 45.455 0.00 0.00 34.35 3.41
6465 8970 3.238108 ACCAGCTTGTAATCGAGACTG 57.762 47.619 0.00 0.00 33.33 3.51
6466 8971 3.963428 AACCAGCTTGTAATCGAGACT 57.037 42.857 0.00 0.00 0.00 3.24
6467 8972 4.326548 GTGTAACCAGCTTGTAATCGAGAC 59.673 45.833 0.00 0.00 0.00 3.36
6468 8973 4.491676 GTGTAACCAGCTTGTAATCGAGA 58.508 43.478 0.00 0.00 0.00 4.04
6469 8974 3.303495 CGTGTAACCAGCTTGTAATCGAG 59.697 47.826 0.00 0.00 0.00 4.04
6470 8975 3.057386 TCGTGTAACCAGCTTGTAATCGA 60.057 43.478 0.00 0.00 0.00 3.59
6471 8976 3.247442 TCGTGTAACCAGCTTGTAATCG 58.753 45.455 0.00 0.00 0.00 3.34
6472 8977 5.447279 CCATTCGTGTAACCAGCTTGTAATC 60.447 44.000 0.00 0.00 0.00 1.75
6473 8978 4.394920 CCATTCGTGTAACCAGCTTGTAAT 59.605 41.667 0.00 0.00 0.00 1.89
6474 8979 3.749088 CCATTCGTGTAACCAGCTTGTAA 59.251 43.478 0.00 0.00 0.00 2.41
6475 8980 3.007074 TCCATTCGTGTAACCAGCTTGTA 59.993 43.478 0.00 0.00 0.00 2.41
6476 8981 2.151202 CCATTCGTGTAACCAGCTTGT 58.849 47.619 0.00 0.00 0.00 3.16
6477 8982 2.422597 TCCATTCGTGTAACCAGCTTG 58.577 47.619 0.00 0.00 0.00 4.01
6478 8983 2.851263 TCCATTCGTGTAACCAGCTT 57.149 45.000 0.00 0.00 0.00 3.74
6479 8984 2.301870 TCTTCCATTCGTGTAACCAGCT 59.698 45.455 0.00 0.00 0.00 4.24
6480 8985 2.673368 CTCTTCCATTCGTGTAACCAGC 59.327 50.000 0.00 0.00 0.00 4.85
6481 8986 3.056107 TCCTCTTCCATTCGTGTAACCAG 60.056 47.826 0.00 0.00 0.00 4.00
6482 8987 2.901192 TCCTCTTCCATTCGTGTAACCA 59.099 45.455 0.00 0.00 0.00 3.67
6483 8988 3.604875 TCCTCTTCCATTCGTGTAACC 57.395 47.619 0.00 0.00 0.00 2.85
6484 8989 3.367025 CGTTCCTCTTCCATTCGTGTAAC 59.633 47.826 0.00 0.00 0.00 2.50
6485 8990 3.256383 TCGTTCCTCTTCCATTCGTGTAA 59.744 43.478 0.00 0.00 0.00 2.41
6486 8991 2.821378 TCGTTCCTCTTCCATTCGTGTA 59.179 45.455 0.00 0.00 0.00 2.90
6487 8992 1.616865 TCGTTCCTCTTCCATTCGTGT 59.383 47.619 0.00 0.00 0.00 4.49
6488 8993 2.363788 TCGTTCCTCTTCCATTCGTG 57.636 50.000 0.00 0.00 0.00 4.35
6489 8994 3.068307 CCTATCGTTCCTCTTCCATTCGT 59.932 47.826 0.00 0.00 0.00 3.85
6490 8995 3.318275 TCCTATCGTTCCTCTTCCATTCG 59.682 47.826 0.00 0.00 0.00 3.34
6491 8996 4.939052 TCCTATCGTTCCTCTTCCATTC 57.061 45.455 0.00 0.00 0.00 2.67
6492 8997 5.189934 AGTTTCCTATCGTTCCTCTTCCATT 59.810 40.000 0.00 0.00 0.00 3.16
6493 8998 4.717280 AGTTTCCTATCGTTCCTCTTCCAT 59.283 41.667 0.00 0.00 0.00 3.41
6494 8999 4.094476 AGTTTCCTATCGTTCCTCTTCCA 58.906 43.478 0.00 0.00 0.00 3.53
6495 9000 4.739587 AGTTTCCTATCGTTCCTCTTCC 57.260 45.455 0.00 0.00 0.00 3.46
6496 9001 5.221283 CCCTAGTTTCCTATCGTTCCTCTTC 60.221 48.000 0.00 0.00 0.00 2.87
6497 9002 4.650131 CCCTAGTTTCCTATCGTTCCTCTT 59.350 45.833 0.00 0.00 0.00 2.85
6498 9003 4.216708 CCCTAGTTTCCTATCGTTCCTCT 58.783 47.826 0.00 0.00 0.00 3.69
6499 9004 3.959449 ACCCTAGTTTCCTATCGTTCCTC 59.041 47.826 0.00 0.00 0.00 3.71
6500 9005 3.991683 ACCCTAGTTTCCTATCGTTCCT 58.008 45.455 0.00 0.00 0.00 3.36
6501 9006 4.405036 AGAACCCTAGTTTCCTATCGTTCC 59.595 45.833 0.00 0.00 35.94 3.62
6502 9007 5.595257 AGAACCCTAGTTTCCTATCGTTC 57.405 43.478 0.00 0.00 35.94 3.95
6503 9008 5.731591 CAAGAACCCTAGTTTCCTATCGTT 58.268 41.667 0.00 0.00 35.94 3.85
6504 9009 4.382793 GCAAGAACCCTAGTTTCCTATCGT 60.383 45.833 0.00 0.00 35.94 3.73
6505 9010 4.120589 GCAAGAACCCTAGTTTCCTATCG 58.879 47.826 0.00 0.00 35.94 2.92
6506 9011 4.452825 GGCAAGAACCCTAGTTTCCTATC 58.547 47.826 0.00 0.00 35.94 2.08
6507 9012 3.118371 CGGCAAGAACCCTAGTTTCCTAT 60.118 47.826 0.00 0.00 35.94 2.57
6508 9013 2.235402 CGGCAAGAACCCTAGTTTCCTA 59.765 50.000 0.00 0.00 35.94 2.94
6509 9014 1.003233 CGGCAAGAACCCTAGTTTCCT 59.997 52.381 0.00 0.00 35.94 3.36
6510 9015 1.450025 CGGCAAGAACCCTAGTTTCC 58.550 55.000 0.00 0.00 35.94 3.13
6511 9016 0.803117 GCGGCAAGAACCCTAGTTTC 59.197 55.000 0.00 0.00 35.94 2.78
6512 9017 0.608308 GGCGGCAAGAACCCTAGTTT 60.608 55.000 3.07 0.00 35.94 2.66
6513 9018 1.002502 GGCGGCAAGAACCCTAGTT 60.003 57.895 3.07 0.00 39.54 2.24
6514 9019 2.669240 GGCGGCAAGAACCCTAGT 59.331 61.111 3.07 0.00 0.00 2.57
6515 9020 2.511600 CGGCGGCAAGAACCCTAG 60.512 66.667 10.53 0.00 0.00 3.02
6516 9021 4.770874 GCGGCGGCAAGAACCCTA 62.771 66.667 9.78 0.00 39.62 3.53
6534 9039 3.610669 CCAGAGGATCCCGGCTCG 61.611 72.222 8.55 0.00 33.66 5.03
6535 9040 1.535202 ATCCAGAGGATCCCGGCTC 60.535 63.158 8.55 0.00 38.09 4.70
6536 9041 1.840650 CATCCAGAGGATCCCGGCT 60.841 63.158 8.55 0.23 40.98 5.52
6537 9042 2.746359 CATCCAGAGGATCCCGGC 59.254 66.667 8.55 0.00 40.98 6.13
6538 9043 2.746359 GCATCCAGAGGATCCCGG 59.254 66.667 8.55 7.15 40.98 5.73
6539 9044 0.542938 TAGGCATCCAGAGGATCCCG 60.543 60.000 8.55 0.00 44.48 5.14
6540 9045 1.836802 GATAGGCATCCAGAGGATCCC 59.163 57.143 8.55 0.00 40.27 3.85
6541 9046 2.765699 GAGATAGGCATCCAGAGGATCC 59.234 54.545 2.48 2.48 40.98 3.36
6542 9047 2.765699 GGAGATAGGCATCCAGAGGATC 59.234 54.545 0.00 0.00 40.98 3.36
6543 9048 2.113233 TGGAGATAGGCATCCAGAGGAT 59.887 50.000 0.00 0.00 44.21 3.24
6544 9049 1.505098 TGGAGATAGGCATCCAGAGGA 59.495 52.381 0.00 0.00 40.70 3.71
6545 9050 2.021262 TGGAGATAGGCATCCAGAGG 57.979 55.000 0.00 0.00 40.70 3.69
6550 9055 1.065564 GGCTGATGGAGATAGGCATCC 60.066 57.143 0.00 0.00 37.02 3.51
6551 9056 1.907936 AGGCTGATGGAGATAGGCATC 59.092 52.381 0.00 0.00 39.24 3.91
6552 9057 1.629353 CAGGCTGATGGAGATAGGCAT 59.371 52.381 9.42 0.00 39.24 4.40
6553 9058 1.054231 CAGGCTGATGGAGATAGGCA 58.946 55.000 9.42 0.00 39.24 4.75
6554 9059 0.321475 GCAGGCTGATGGAGATAGGC 60.321 60.000 20.86 0.00 37.28 3.93
6555 9060 0.324285 GGCAGGCTGATGGAGATAGG 59.676 60.000 20.86 0.00 0.00 2.57
6556 9061 1.350071 AGGCAGGCTGATGGAGATAG 58.650 55.000 20.86 0.00 0.00 2.08
6557 9062 3.565979 AGGCAGGCTGATGGAGATA 57.434 52.632 20.86 0.00 0.00 1.98
6558 9063 4.414986 AGGCAGGCTGATGGAGAT 57.585 55.556 20.86 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.