Multiple sequence alignment - TraesCS5B01G095600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G095600 chr5B 100.000 9308 0 0 1 9308 126238479 126247786 0.000000e+00 17189.0
1 TraesCS5B01G095600 chr5B 79.889 542 84 14 8785 9305 126294341 126294878 3.170000e-99 374.0
2 TraesCS5B01G095600 chr5D 98.604 4299 43 8 2326 6610 114890753 114895048 0.000000e+00 7590.0
3 TraesCS5B01G095600 chr5D 98.339 2528 35 4 6788 9308 114895045 114897572 0.000000e+00 4429.0
4 TraesCS5B01G095600 chr5D 93.274 1576 58 21 685 2235 114888846 114890398 0.000000e+00 2279.0
5 TraesCS5B01G095600 chr5D 80.882 544 79 13 8785 9307 115021021 115021560 1.130000e-108 405.0
6 TraesCS5B01G095600 chr5D 89.172 157 14 3 5537 5692 222428927 222429081 9.540000e-45 193.0
7 TraesCS5B01G095600 chr5D 95.283 106 5 0 1 106 436853807 436853702 1.610000e-37 169.0
8 TraesCS5B01G095600 chr5A 97.925 3325 57 8 2283 5600 120747128 120750447 0.000000e+00 5747.0
9 TraesCS5B01G095600 chr5A 97.562 2502 54 7 6788 9286 120751406 120753903 0.000000e+00 4276.0
10 TraesCS5B01G095600 chr5A 90.612 2141 141 24 120 2235 120744747 120746852 0.000000e+00 2785.0
11 TraesCS5B01G095600 chr5A 97.718 964 15 4 5653 6610 120750447 120751409 0.000000e+00 1652.0
12 TraesCS5B01G095600 chr5A 80.822 511 72 14 8820 9308 121113342 121113848 2.450000e-100 377.0
13 TraesCS5B01G095600 chr5A 100.000 181 0 0 6609 6789 664552842 664553022 1.500000e-87 335.0
14 TraesCS5B01G095600 chr5A 93.578 109 7 0 1 109 137658430 137658538 7.480000e-36 163.0
15 TraesCS5B01G095600 chr5A 94.286 105 6 0 2 106 687850574 687850678 2.690000e-35 161.0
16 TraesCS5B01G095600 chr5A 96.970 33 1 0 993 1025 472274588 472274556 1.000000e-03 56.5
17 TraesCS5B01G095600 chr7B 99.462 186 0 1 6609 6793 46028492 46028677 4.160000e-88 337.0
18 TraesCS5B01G095600 chr7B 99.457 184 0 1 6606 6789 252794266 252794448 5.390000e-87 333.0
19 TraesCS5B01G095600 chr7B 94.419 215 6 5 6575 6789 55865174 55864966 9.010000e-85 326.0
20 TraesCS5B01G095600 chr7B 100.000 30 0 0 998 1027 530383475 530383446 1.000000e-03 56.5
21 TraesCS5B01G095600 chr4B 99.459 185 0 1 6605 6789 588430814 588430997 1.500000e-87 335.0
22 TraesCS5B01G095600 chr4B 97.462 197 1 4 6594 6789 128540657 128540850 5.390000e-87 333.0
23 TraesCS5B01G095600 chr3A 98.421 190 2 1 6610 6799 724318928 724319116 5.390000e-87 333.0
24 TraesCS5B01G095600 chr3A 95.408 196 6 3 6597 6791 125867074 125867267 9.080000e-80 309.0
25 TraesCS5B01G095600 chr3B 93.304 224 8 7 6566 6787 284561835 284561617 3.240000e-84 324.0
26 TraesCS5B01G095600 chr6D 80.456 307 54 5 107 409 11576103 11575799 7.270000e-56 230.0
27 TraesCS5B01G095600 chr6D 81.323 257 45 2 107 360 2900307 2900563 1.230000e-48 206.0
28 TraesCS5B01G095600 chr6D 79.381 291 54 5 107 394 403660535 403660822 5.700000e-47 200.0
29 TraesCS5B01G095600 chr6D 95.327 107 5 0 1 107 174473743 174473637 4.470000e-38 171.0
30 TraesCS5B01G095600 chr6D 78.968 252 50 1 107 355 462353587 462353838 1.610000e-37 169.0
31 TraesCS5B01G095600 chr1A 92.157 153 11 1 5541 5692 395177449 395177601 2.040000e-51 215.0
32 TraesCS5B01G095600 chr2B 79.545 308 56 5 107 409 422512116 422511811 7.320000e-51 213.0
33 TraesCS5B01G095600 chr2A 91.447 152 12 1 5541 5691 549290426 549290275 3.410000e-49 207.0
34 TraesCS5B01G095600 chr2A 94.444 108 6 0 2 109 478030815 478030708 5.780000e-37 167.0
35 TraesCS5B01G095600 chr7D 87.500 176 17 5 5522 5692 117755387 117755212 2.050000e-46 198.0
36 TraesCS5B01G095600 chr7D 95.238 105 5 0 2 106 560920977 560921081 5.780000e-37 167.0
37 TraesCS5B01G095600 chr1D 90.196 153 14 1 5541 5692 314705606 314705758 2.050000e-46 198.0
38 TraesCS5B01G095600 chr3D 88.485 165 16 3 5541 5704 441388819 441388657 7.370000e-46 196.0
39 TraesCS5B01G095600 chr2D 88.272 162 18 1 5532 5692 14768240 14768401 9.540000e-45 193.0
40 TraesCS5B01G095600 chr2D 88.125 160 18 1 5541 5699 617101213 617101054 1.230000e-43 189.0
41 TraesCS5B01G095600 chr4D 77.097 310 63 6 107 411 127535916 127536222 1.240000e-38 172.0
42 TraesCS5B01G095600 chr6A 95.238 105 5 0 1 105 173309512 173309616 5.780000e-37 167.0
43 TraesCS5B01G095600 chr6B 94.393 107 6 0 1 107 39012228 39012122 2.080000e-36 165.0
44 TraesCS5B01G095600 chr6B 77.821 257 50 5 160 411 384973520 384973266 1.620000e-32 152.0
45 TraesCS5B01G095600 chr4A 92.727 110 7 1 1 109 129837348 129837457 3.480000e-34 158.0
46 TraesCS5B01G095600 chr4A 76.109 293 63 5 119 407 440933910 440933621 7.530000e-31 147.0
47 TraesCS5B01G095600 chr7A 100.000 30 0 0 998 1027 567587369 567587340 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G095600 chr5B 126238479 126247786 9307 False 17189 17189 100.00000 1 9308 1 chr5B.!!$F1 9307
1 TraesCS5B01G095600 chr5B 126294341 126294878 537 False 374 374 79.88900 8785 9305 1 chr5B.!!$F2 520
2 TraesCS5B01G095600 chr5D 114888846 114897572 8726 False 4766 7590 96.73900 685 9308 3 chr5D.!!$F3 8623
3 TraesCS5B01G095600 chr5D 115021021 115021560 539 False 405 405 80.88200 8785 9307 1 chr5D.!!$F1 522
4 TraesCS5B01G095600 chr5A 120744747 120753903 9156 False 3615 5747 95.95425 120 9286 4 chr5A.!!$F5 9166
5 TraesCS5B01G095600 chr5A 121113342 121113848 506 False 377 377 80.82200 8820 9308 1 chr5A.!!$F1 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.036765 TTTGTTCCCGCGCTACTGAT 60.037 50.000 5.56 0.00 0.00 2.90 F
62 63 0.037232 AGCACCTCTTTCTGTACCGC 60.037 55.000 0.00 0.00 0.00 5.68 F
822 871 0.388134 GATTTGCCAGCACTGCACAG 60.388 55.000 3.30 0.00 38.72 3.66 F
869 918 0.687757 CCCATCGAGGAGGAGTTGGA 60.688 60.000 0.00 0.00 41.22 3.53 F
870 919 0.749649 CCATCGAGGAGGAGTTGGAG 59.250 60.000 0.00 0.00 41.22 3.86 F
871 920 0.749649 CATCGAGGAGGAGTTGGAGG 59.250 60.000 0.00 0.00 0.00 4.30 F
2276 2347 0.691078 TATCAGGTGAGCACTCCCCC 60.691 60.000 0.16 0.00 0.00 5.40 F
2289 2588 0.613012 CTCCCCCAGGAAAAGGCTTG 60.613 60.000 0.00 0.00 43.40 4.01 F
2299 2598 2.297033 GGAAAAGGCTTGCTGATTGTCA 59.703 45.455 0.00 0.00 0.00 3.58 F
3623 3968 3.711704 TGACCCTCATATTCTTGTCTCCC 59.288 47.826 0.00 0.00 0.00 4.30 F
5346 5695 1.608590 CATGTTGGTGTCCACAGGAAC 59.391 52.381 0.00 0.54 31.38 3.62 F
6646 7000 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35 F
6670 7024 0.107831 CCAAGAGGTCACGGGTTCAA 59.892 55.000 0.00 0.00 0.00 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1808 1877 0.701731 TTGGCCCAAAAGCTAGCCTA 59.298 50.000 12.13 3.37 45.94 3.93 R
1910 1979 1.545582 GTAGCAAAGCCAATCCAGCAA 59.454 47.619 0.00 0.00 0.00 3.91 R
2265 2336 0.322906 CTTTTCCTGGGGGAGTGCTC 60.323 60.000 0.00 0.00 43.29 4.26 R
2274 2345 0.540365 TCAGCAAGCCTTTTCCTGGG 60.540 55.000 0.00 0.00 0.00 4.45 R
2275 2346 1.553706 ATCAGCAAGCCTTTTCCTGG 58.446 50.000 0.00 0.00 0.00 4.45 R
2278 2349 2.297033 TGACAATCAGCAAGCCTTTTCC 59.703 45.455 0.00 0.00 0.00 3.13 R
3249 3594 0.466124 GGCACTACCAGGATGACCTC 59.534 60.000 0.00 0.00 45.94 3.85 R
3703 4049 0.541392 TTACCTGTGCTGATCGGCAT 59.459 50.000 30.93 17.94 44.34 4.40 R
3943 4289 1.816835 CGCGGATCCTATTAGTGGCTA 59.183 52.381 10.75 0.00 0.00 3.93 R
5475 5824 1.109323 GGAAGCAAAGCCTGGTGTGT 61.109 55.000 0.00 0.00 35.42 3.72 R
6651 7005 0.107831 TTGAACCCGTGACCTCTTGG 59.892 55.000 0.00 0.00 39.83 3.61 R
7924 8282 0.554305 TGCTCGGTACCTCCATCCTA 59.446 55.000 10.90 0.00 35.57 2.94 R
8355 8715 3.508793 AGGTATCTCAGGAAAACGTTCGA 59.491 43.478 0.00 0.00 34.28 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.650608 CAGTAGCGCTTGTTTTGTTCC 58.349 47.619 18.68 0.00 0.00 3.62
21 22 1.607148 AGTAGCGCTTGTTTTGTTCCC 59.393 47.619 18.68 0.00 0.00 3.97
22 23 0.589223 TAGCGCTTGTTTTGTTCCCG 59.411 50.000 18.68 0.00 0.00 5.14
23 24 2.300066 GCGCTTGTTTTGTTCCCGC 61.300 57.895 0.00 0.00 0.00 6.13
24 25 2.008697 CGCTTGTTTTGTTCCCGCG 61.009 57.895 0.00 0.00 0.00 6.46
25 26 2.300066 GCTTGTTTTGTTCCCGCGC 61.300 57.895 0.00 0.00 0.00 6.86
26 27 1.358759 CTTGTTTTGTTCCCGCGCT 59.641 52.632 5.56 0.00 0.00 5.92
27 28 0.589223 CTTGTTTTGTTCCCGCGCTA 59.411 50.000 5.56 0.00 0.00 4.26
28 29 0.308376 TTGTTTTGTTCCCGCGCTAC 59.692 50.000 5.56 0.00 0.00 3.58
29 30 0.533308 TGTTTTGTTCCCGCGCTACT 60.533 50.000 5.56 0.00 0.00 2.57
30 31 0.110373 GTTTTGTTCCCGCGCTACTG 60.110 55.000 5.56 0.00 0.00 2.74
31 32 0.249953 TTTTGTTCCCGCGCTACTGA 60.250 50.000 5.56 0.00 0.00 3.41
32 33 0.036765 TTTGTTCCCGCGCTACTGAT 60.037 50.000 5.56 0.00 0.00 2.90
33 34 0.818938 TTGTTCCCGCGCTACTGATA 59.181 50.000 5.56 0.00 0.00 2.15
34 35 0.818938 TGTTCCCGCGCTACTGATAA 59.181 50.000 5.56 0.00 0.00 1.75
35 36 1.411246 TGTTCCCGCGCTACTGATAAT 59.589 47.619 5.56 0.00 0.00 1.28
36 37 2.159014 TGTTCCCGCGCTACTGATAATT 60.159 45.455 5.56 0.00 0.00 1.40
37 38 3.068448 TGTTCCCGCGCTACTGATAATTA 59.932 43.478 5.56 0.00 0.00 1.40
38 39 3.570926 TCCCGCGCTACTGATAATTAG 57.429 47.619 5.56 0.00 0.00 1.73
39 40 1.993370 CCCGCGCTACTGATAATTAGC 59.007 52.381 5.56 0.00 37.87 3.09
40 41 2.609491 CCCGCGCTACTGATAATTAGCA 60.609 50.000 5.56 2.99 40.75 3.49
41 42 2.663602 CCGCGCTACTGATAATTAGCAG 59.336 50.000 25.32 25.32 44.74 4.24
51 52 6.095432 CTGATAATTAGCAGTAGCACCTCT 57.905 41.667 20.22 0.00 45.49 3.69
52 53 6.485830 TGATAATTAGCAGTAGCACCTCTT 57.514 37.500 0.00 0.00 45.49 2.85
53 54 6.889198 TGATAATTAGCAGTAGCACCTCTTT 58.111 36.000 0.00 0.00 45.49 2.52
54 55 6.986817 TGATAATTAGCAGTAGCACCTCTTTC 59.013 38.462 0.00 0.00 45.49 2.62
55 56 5.428184 AATTAGCAGTAGCACCTCTTTCT 57.572 39.130 0.00 0.00 45.49 2.52
56 57 2.758736 AGCAGTAGCACCTCTTTCTG 57.241 50.000 0.00 0.00 45.49 3.02
57 58 1.974236 AGCAGTAGCACCTCTTTCTGT 59.026 47.619 0.00 0.00 45.49 3.41
58 59 3.165875 AGCAGTAGCACCTCTTTCTGTA 58.834 45.455 0.00 0.00 45.49 2.74
59 60 3.056465 AGCAGTAGCACCTCTTTCTGTAC 60.056 47.826 0.00 0.00 45.49 2.90
60 61 3.851098 CAGTAGCACCTCTTTCTGTACC 58.149 50.000 0.00 0.00 0.00 3.34
61 62 2.492484 AGTAGCACCTCTTTCTGTACCG 59.508 50.000 0.00 0.00 0.00 4.02
62 63 0.037232 AGCACCTCTTTCTGTACCGC 60.037 55.000 0.00 0.00 0.00 5.68
63 64 1.352156 GCACCTCTTTCTGTACCGCG 61.352 60.000 0.00 0.00 0.00 6.46
64 65 1.080025 ACCTCTTTCTGTACCGCGC 60.080 57.895 0.00 0.00 0.00 6.86
65 66 1.215647 CCTCTTTCTGTACCGCGCT 59.784 57.895 5.56 0.00 0.00 5.92
66 67 1.078759 CCTCTTTCTGTACCGCGCTG 61.079 60.000 5.56 0.00 0.00 5.18
67 68 1.687494 CTCTTTCTGTACCGCGCTGC 61.687 60.000 5.56 0.00 0.00 5.25
68 69 1.738099 CTTTCTGTACCGCGCTGCT 60.738 57.895 5.56 0.00 0.00 4.24
69 70 1.959899 CTTTCTGTACCGCGCTGCTG 61.960 60.000 5.56 0.00 0.00 4.41
72 73 3.699955 CTGTACCGCGCTGCTGCTA 62.700 63.158 14.03 0.00 36.97 3.49
73 74 2.508439 GTACCGCGCTGCTGCTAA 60.508 61.111 14.03 0.00 36.97 3.09
74 75 2.202743 TACCGCGCTGCTGCTAAG 60.203 61.111 14.03 4.24 36.97 2.18
75 76 3.716539 TACCGCGCTGCTGCTAAGG 62.717 63.158 14.03 14.88 36.97 2.69
77 78 3.121030 CGCGCTGCTGCTAAGGTT 61.121 61.111 14.03 0.00 36.97 3.50
78 79 2.787915 GCGCTGCTGCTAAGGTTC 59.212 61.111 14.03 0.00 36.97 3.62
79 80 1.743252 GCGCTGCTGCTAAGGTTCT 60.743 57.895 14.03 0.00 36.97 3.01
80 81 1.975363 GCGCTGCTGCTAAGGTTCTG 61.975 60.000 14.03 0.00 36.97 3.02
81 82 0.671781 CGCTGCTGCTAAGGTTCTGT 60.672 55.000 14.03 0.00 36.97 3.41
82 83 0.801251 GCTGCTGCTAAGGTTCTGTG 59.199 55.000 8.53 0.00 36.03 3.66
83 84 1.879796 GCTGCTGCTAAGGTTCTGTGT 60.880 52.381 8.53 0.00 36.03 3.72
84 85 2.612972 GCTGCTGCTAAGGTTCTGTGTA 60.613 50.000 8.53 0.00 36.03 2.90
85 86 3.866651 CTGCTGCTAAGGTTCTGTGTAT 58.133 45.455 0.00 0.00 0.00 2.29
86 87 4.680708 GCTGCTGCTAAGGTTCTGTGTATA 60.681 45.833 8.53 0.00 36.03 1.47
87 88 5.414789 TGCTGCTAAGGTTCTGTGTATAA 57.585 39.130 0.00 0.00 0.00 0.98
88 89 5.419542 TGCTGCTAAGGTTCTGTGTATAAG 58.580 41.667 0.00 0.00 0.00 1.73
89 90 4.811557 GCTGCTAAGGTTCTGTGTATAAGG 59.188 45.833 0.00 0.00 0.00 2.69
90 91 5.627040 GCTGCTAAGGTTCTGTGTATAAGGT 60.627 44.000 0.00 0.00 0.00 3.50
91 92 6.368779 TGCTAAGGTTCTGTGTATAAGGTT 57.631 37.500 0.00 0.00 0.00 3.50
92 93 6.775708 TGCTAAGGTTCTGTGTATAAGGTTT 58.224 36.000 0.00 0.00 0.00 3.27
93 94 7.228590 TGCTAAGGTTCTGTGTATAAGGTTTT 58.771 34.615 0.00 0.00 0.00 2.43
94 95 7.389607 TGCTAAGGTTCTGTGTATAAGGTTTTC 59.610 37.037 0.00 0.00 0.00 2.29
95 96 7.148289 GCTAAGGTTCTGTGTATAAGGTTTTCC 60.148 40.741 0.00 0.00 41.05 3.13
96 97 5.567430 AGGTTCTGTGTATAAGGTTTTCCC 58.433 41.667 0.00 0.00 41.86 3.97
98 99 6.502863 AGGTTCTGTGTATAAGGTTTTCCCTA 59.497 38.462 0.00 0.00 45.47 3.53
99 100 6.822170 GGTTCTGTGTATAAGGTTTTCCCTAG 59.178 42.308 0.00 0.00 45.47 3.02
100 101 7.392418 GTTCTGTGTATAAGGTTTTCCCTAGT 58.608 38.462 0.00 0.00 45.47 2.57
101 102 8.534496 GTTCTGTGTATAAGGTTTTCCCTAGTA 58.466 37.037 0.00 0.00 45.47 1.82
102 103 8.302515 TCTGTGTATAAGGTTTTCCCTAGTAG 57.697 38.462 0.00 0.00 45.47 2.57
103 104 7.897565 TCTGTGTATAAGGTTTTCCCTAGTAGT 59.102 37.037 0.00 0.00 45.47 2.73
104 105 7.844009 TGTGTATAAGGTTTTCCCTAGTAGTG 58.156 38.462 0.00 0.00 45.47 2.74
105 106 7.455638 TGTGTATAAGGTTTTCCCTAGTAGTGT 59.544 37.037 0.00 0.00 45.47 3.55
106 107 7.978414 GTGTATAAGGTTTTCCCTAGTAGTGTC 59.022 40.741 0.00 0.00 45.47 3.67
107 108 7.897565 TGTATAAGGTTTTCCCTAGTAGTGTCT 59.102 37.037 0.00 0.00 45.47 3.41
108 109 9.413734 GTATAAGGTTTTCCCTAGTAGTGTCTA 57.586 37.037 0.00 0.00 45.47 2.59
109 110 8.906238 ATAAGGTTTTCCCTAGTAGTGTCTAA 57.094 34.615 0.00 0.00 45.47 2.10
110 111 6.602410 AGGTTTTCCCTAGTAGTGTCTAAC 57.398 41.667 0.00 0.00 43.87 2.34
111 112 5.483231 AGGTTTTCCCTAGTAGTGTCTAACC 59.517 44.000 0.00 0.00 43.87 2.85
112 113 5.246883 GGTTTTCCCTAGTAGTGTCTAACCA 59.753 44.000 0.00 0.00 0.00 3.67
113 114 5.990120 TTTCCCTAGTAGTGTCTAACCAC 57.010 43.478 0.00 0.00 35.53 4.16
114 115 4.662966 TCCCTAGTAGTGTCTAACCACA 57.337 45.455 0.00 0.00 37.82 4.17
115 116 5.001833 TCCCTAGTAGTGTCTAACCACAA 57.998 43.478 0.00 0.00 37.82 3.33
116 117 4.768968 TCCCTAGTAGTGTCTAACCACAAC 59.231 45.833 0.00 0.00 37.82 3.32
117 118 4.380233 CCCTAGTAGTGTCTAACCACAACG 60.380 50.000 0.00 0.00 37.82 4.10
118 119 3.022607 AGTAGTGTCTAACCACAACGC 57.977 47.619 0.00 0.00 37.82 4.84
129 130 0.609131 CCACAACGCCCCAAAGAGAT 60.609 55.000 0.00 0.00 0.00 2.75
150 151 2.017559 GCAGGAATCTACGCCGGAGT 62.018 60.000 17.10 17.10 0.00 3.85
153 154 0.745468 GGAATCTACGCCGGAGTTCT 59.255 55.000 18.33 0.00 0.00 3.01
158 159 2.594119 CTACGCCGGAGTTCTGTCGG 62.594 65.000 18.33 0.00 45.84 4.79
184 185 1.550524 TCCAGACGGATGAACTCAAGG 59.449 52.381 0.00 0.00 35.91 3.61
192 193 2.224161 GGATGAACTCAAGGAGGATCGG 60.224 54.545 0.00 0.00 34.37 4.18
281 282 8.811017 ACTAGAAAACCCTAACCTAAACTACTC 58.189 37.037 0.00 0.00 0.00 2.59
282 283 6.695429 AGAAAACCCTAACCTAAACTACTCG 58.305 40.000 0.00 0.00 0.00 4.18
283 284 5.411831 AAACCCTAACCTAAACTACTCGG 57.588 43.478 0.00 0.00 0.00 4.63
284 285 4.322057 ACCCTAACCTAAACTACTCGGA 57.678 45.455 0.00 0.00 0.00 4.55
316 320 1.636769 GGATTCCCCTCCCTGTCACC 61.637 65.000 0.00 0.00 0.00 4.02
317 321 1.972660 GATTCCCCTCCCTGTCACCG 61.973 65.000 0.00 0.00 0.00 4.94
318 322 4.715130 TCCCCTCCCTGTCACCGG 62.715 72.222 0.00 0.00 0.00 5.28
354 358 2.435059 GAGCGGAGGCAAGTCCAC 60.435 66.667 0.49 0.00 43.41 4.02
366 370 2.281484 GTCCACAGGCTTGCCGAA 60.281 61.111 5.95 0.00 0.00 4.30
375 379 0.668535 GGCTTGCCGAAGAAGTTTGT 59.331 50.000 0.00 0.00 0.00 2.83
377 381 2.488153 GGCTTGCCGAAGAAGTTTGTAT 59.512 45.455 0.00 0.00 0.00 2.29
379 383 3.188460 GCTTGCCGAAGAAGTTTGTATGA 59.812 43.478 0.00 0.00 0.00 2.15
391 395 5.453567 AGTTTGTATGAAAGAGTTTGCCC 57.546 39.130 0.00 0.00 0.00 5.36
392 396 5.140454 AGTTTGTATGAAAGAGTTTGCCCT 58.860 37.500 0.00 0.00 0.00 5.19
394 398 6.775629 AGTTTGTATGAAAGAGTTTGCCCTAA 59.224 34.615 0.00 0.00 0.00 2.69
396 400 5.007682 TGTATGAAAGAGTTTGCCCTAACC 58.992 41.667 0.00 0.00 0.00 2.85
397 401 2.500229 TGAAAGAGTTTGCCCTAACCG 58.500 47.619 0.00 0.00 0.00 4.44
398 402 2.158726 TGAAAGAGTTTGCCCTAACCGT 60.159 45.455 0.00 0.00 0.00 4.83
421 425 7.148340 CCGTCTAGGGTTAGAGTTATTATACGG 60.148 44.444 0.00 0.00 36.61 4.02
428 432 7.981225 GGGTTAGAGTTATTATACGGTTTGACA 59.019 37.037 0.00 0.00 0.00 3.58
438 442 5.705609 ATACGGTTTGACATGCTTTTTCT 57.294 34.783 0.00 0.00 0.00 2.52
440 444 4.359706 ACGGTTTGACATGCTTTTTCTTC 58.640 39.130 0.00 0.00 0.00 2.87
448 452 5.829924 TGACATGCTTTTTCTTCTCTTCCTT 59.170 36.000 0.00 0.00 0.00 3.36
450 454 5.242615 ACATGCTTTTTCTTCTCTTCCTTCC 59.757 40.000 0.00 0.00 0.00 3.46
453 457 4.217334 GCTTTTTCTTCTCTTCCTTCCCTG 59.783 45.833 0.00 0.00 0.00 4.45
455 459 2.723530 TCTTCTCTTCCTTCCCTGGT 57.276 50.000 0.00 0.00 0.00 4.00
460 464 2.592512 TCTCTTCCTTCCCTGGTCCTAT 59.407 50.000 0.00 0.00 0.00 2.57
462 466 3.115390 TCTTCCTTCCCTGGTCCTATTG 58.885 50.000 0.00 0.00 0.00 1.90
465 469 3.115390 TCCTTCCCTGGTCCTATTGAAG 58.885 50.000 0.00 0.00 0.00 3.02
468 472 4.265073 CTTCCCTGGTCCTATTGAAGTTG 58.735 47.826 0.00 0.00 0.00 3.16
469 473 2.026262 TCCCTGGTCCTATTGAAGTTGC 60.026 50.000 0.00 0.00 0.00 4.17
481 485 3.883744 AAGTTGCGCTCACCCGAGG 62.884 63.158 9.73 0.00 39.88 4.63
569 573 8.879427 ATATTTAAGGTATAGGGTTGAATGCC 57.121 34.615 0.00 0.00 0.00 4.40
570 574 5.987019 TTAAGGTATAGGGTTGAATGCCT 57.013 39.130 0.00 0.00 39.57 4.75
572 576 4.976540 AGGTATAGGGTTGAATGCCTAC 57.023 45.455 0.00 0.00 36.56 3.18
575 579 4.593634 GGTATAGGGTTGAATGCCTACTCT 59.406 45.833 0.00 0.00 35.53 3.24
578 583 2.026822 AGGGTTGAATGCCTACTCTGTG 60.027 50.000 0.00 0.00 30.13 3.66
583 588 1.204941 GAATGCCTACTCTGTGTCCGT 59.795 52.381 0.00 0.00 0.00 4.69
588 593 1.135139 CCTACTCTGTGTCCGTGGATG 59.865 57.143 0.00 0.00 0.00 3.51
593 598 2.048597 GTGTCCGTGGATGCGTCA 60.049 61.111 8.47 0.00 0.00 4.35
594 599 2.094659 GTGTCCGTGGATGCGTCAG 61.095 63.158 8.47 0.00 0.00 3.51
597 602 0.460284 GTCCGTGGATGCGTCAGAAT 60.460 55.000 8.47 0.00 0.00 2.40
601 606 2.545742 CCGTGGATGCGTCAGAATATGA 60.546 50.000 8.47 0.00 34.79 2.15
630 666 0.599204 TTCAGGTCCGCGTTGAAGAC 60.599 55.000 4.92 4.45 0.00 3.01
639 675 1.777199 CGTTGAAGACGCCGTTACC 59.223 57.895 0.00 0.00 45.86 2.85
640 676 1.620413 CGTTGAAGACGCCGTTACCC 61.620 60.000 0.00 0.00 45.86 3.69
641 677 1.004679 TTGAAGACGCCGTTACCCC 60.005 57.895 0.00 0.00 0.00 4.95
642 678 2.507769 GAAGACGCCGTTACCCCG 60.508 66.667 0.00 0.00 0.00 5.73
643 679 4.747529 AAGACGCCGTTACCCCGC 62.748 66.667 0.00 0.00 0.00 6.13
646 682 4.622650 ACGCCGTTACCCCGCAAA 62.623 61.111 0.00 0.00 0.00 3.68
647 683 3.355455 CGCCGTTACCCCGCAAAA 61.355 61.111 0.00 0.00 0.00 2.44
648 684 2.564458 GCCGTTACCCCGCAAAAG 59.436 61.111 0.00 0.00 0.00 2.27
649 685 1.967494 GCCGTTACCCCGCAAAAGA 60.967 57.895 0.00 0.00 0.00 2.52
650 686 1.517210 GCCGTTACCCCGCAAAAGAA 61.517 55.000 0.00 0.00 0.00 2.52
651 687 0.519961 CCGTTACCCCGCAAAAGAAG 59.480 55.000 0.00 0.00 0.00 2.85
652 688 1.515081 CGTTACCCCGCAAAAGAAGA 58.485 50.000 0.00 0.00 0.00 2.87
653 689 1.874872 CGTTACCCCGCAAAAGAAGAA 59.125 47.619 0.00 0.00 0.00 2.52
654 690 2.095919 CGTTACCCCGCAAAAGAAGAAG 60.096 50.000 0.00 0.00 0.00 2.85
655 691 3.143728 GTTACCCCGCAAAAGAAGAAGA 58.856 45.455 0.00 0.00 0.00 2.87
656 692 2.586648 ACCCCGCAAAAGAAGAAGAT 57.413 45.000 0.00 0.00 0.00 2.40
657 693 2.162681 ACCCCGCAAAAGAAGAAGATG 58.837 47.619 0.00 0.00 0.00 2.90
658 694 1.135286 CCCCGCAAAAGAAGAAGATGC 60.135 52.381 0.00 0.00 0.00 3.91
659 695 1.135286 CCCGCAAAAGAAGAAGATGCC 60.135 52.381 0.00 0.00 33.55 4.40
721 757 1.068741 GGGCAACTACTACCCGATCTG 59.931 57.143 0.00 0.00 32.92 2.90
822 871 0.388134 GATTTGCCAGCACTGCACAG 60.388 55.000 3.30 0.00 38.72 3.66
854 903 4.814967 TCCCAAGAAAGAAAGAAACCCAT 58.185 39.130 0.00 0.00 0.00 4.00
863 912 1.952621 AAGAAACCCATCGAGGAGGA 58.047 50.000 10.87 0.00 41.22 3.71
864 913 1.490574 AGAAACCCATCGAGGAGGAG 58.509 55.000 10.87 1.32 41.22 3.69
865 914 1.196012 GAAACCCATCGAGGAGGAGT 58.804 55.000 10.87 1.84 41.22 3.85
866 915 1.555533 GAAACCCATCGAGGAGGAGTT 59.444 52.381 10.87 6.89 41.22 3.01
867 916 0.905357 AACCCATCGAGGAGGAGTTG 59.095 55.000 10.87 0.00 41.22 3.16
868 917 0.978146 ACCCATCGAGGAGGAGTTGG 60.978 60.000 10.87 1.37 41.22 3.77
869 918 0.687757 CCCATCGAGGAGGAGTTGGA 60.688 60.000 0.00 0.00 41.22 3.53
870 919 0.749649 CCATCGAGGAGGAGTTGGAG 59.250 60.000 0.00 0.00 41.22 3.86
871 920 0.749649 CATCGAGGAGGAGTTGGAGG 59.250 60.000 0.00 0.00 0.00 4.30
954 1003 3.052490 CCTCTCTCCCTCCCGGAATATAT 60.052 52.174 0.73 0.00 41.40 0.86
1164 1220 1.043116 TCAAGATCGGTCCGCATCCT 61.043 55.000 6.34 0.00 0.00 3.24
1353 1409 1.826096 GAGTCTCGGCCCTAGAAAACT 59.174 52.381 4.06 0.00 0.00 2.66
1370 1430 1.672356 CTTTGCGACCCTGACCCAG 60.672 63.158 0.00 0.00 0.00 4.45
1495 1560 4.742138 GCCAAAGGAGCTAGTAAGGAGATG 60.742 50.000 0.00 0.00 0.00 2.90
1505 1570 4.989875 AGTAAGGAGATGGCATGCTAAT 57.010 40.909 18.92 11.84 0.00 1.73
1658 1723 1.522806 GTCACGGTTGTCACTGCCA 60.523 57.895 0.00 0.00 31.56 4.92
1745 1812 2.039084 AGTTGCGGAGGTCTTTCATCTT 59.961 45.455 0.00 0.00 0.00 2.40
1844 1913 2.642139 CAAATGTGGATGCTGTGTCC 57.358 50.000 0.00 0.00 36.26 4.02
1860 1929 2.943033 GTGTCCGAACATTGGGGATAAG 59.057 50.000 0.00 0.00 37.81 1.73
1862 1931 2.943033 GTCCGAACATTGGGGATAAGTG 59.057 50.000 0.00 0.00 31.43 3.16
1888 1957 8.722342 AACATGTGATATTGTGTAACGTTTTC 57.278 30.769 5.91 0.77 42.39 2.29
1935 2004 1.334869 GGATTGGCTTTGCTACGATGG 59.665 52.381 0.00 0.00 0.00 3.51
1938 2007 2.709475 GCTTTGCTACGATGGCGG 59.291 61.111 0.00 0.00 43.17 6.13
2047 2118 3.894427 CAGATGCTGGTACTATGTCTCCT 59.106 47.826 0.00 0.00 0.00 3.69
2093 2164 3.742640 GCTTGATGATGGTGGAGAGGTAC 60.743 52.174 0.00 0.00 0.00 3.34
2124 2195 9.814899 TCTTGGGTGCACATATAAATTTTAATG 57.185 29.630 20.43 3.58 0.00 1.90
2199 2270 5.131067 GTGGACCTGGATTTAGGGAATTAC 58.869 45.833 0.00 0.00 42.35 1.89
2235 2306 6.070424 TGGATGTTACTCTTACGAGGGAAAAT 60.070 38.462 0.86 0.00 41.71 1.82
2236 2307 7.124599 TGGATGTTACTCTTACGAGGGAAAATA 59.875 37.037 0.86 0.00 41.71 1.40
2237 2308 7.983484 GGATGTTACTCTTACGAGGGAAAATAA 59.017 37.037 0.86 0.00 41.71 1.40
2238 2309 8.713737 ATGTTACTCTTACGAGGGAAAATAAC 57.286 34.615 0.86 0.81 41.71 1.89
2239 2310 7.669427 TGTTACTCTTACGAGGGAAAATAACA 58.331 34.615 0.86 3.17 41.71 2.41
2240 2311 8.316214 TGTTACTCTTACGAGGGAAAATAACAT 58.684 33.333 0.86 0.00 41.71 2.71
2241 2312 9.159364 GTTACTCTTACGAGGGAAAATAACATT 57.841 33.333 0.86 0.00 41.71 2.71
2243 2314 8.713737 ACTCTTACGAGGGAAAATAACATTAC 57.286 34.615 0.86 0.00 41.71 1.89
2244 2315 7.767659 ACTCTTACGAGGGAAAATAACATTACC 59.232 37.037 0.86 0.00 41.71 2.85
2245 2316 7.622713 TCTTACGAGGGAAAATAACATTACCA 58.377 34.615 0.00 0.00 0.00 3.25
2246 2317 7.550196 TCTTACGAGGGAAAATAACATTACCAC 59.450 37.037 0.00 0.00 0.00 4.16
2247 2318 5.812286 ACGAGGGAAAATAACATTACCACT 58.188 37.500 0.00 0.00 0.00 4.00
2248 2319 5.646360 ACGAGGGAAAATAACATTACCACTG 59.354 40.000 0.00 0.00 0.00 3.66
2249 2320 5.065988 CGAGGGAAAATAACATTACCACTGG 59.934 44.000 0.00 0.00 0.00 4.00
2250 2321 5.269189 AGGGAAAATAACATTACCACTGGG 58.731 41.667 0.00 0.00 41.29 4.45
2251 2322 5.015817 AGGGAAAATAACATTACCACTGGGA 59.984 40.000 0.00 0.00 38.05 4.37
2252 2323 5.717654 GGGAAAATAACATTACCACTGGGAA 59.282 40.000 0.00 0.00 38.05 3.97
2253 2324 6.127451 GGGAAAATAACATTACCACTGGGAAG 60.127 42.308 0.00 0.00 38.05 3.46
2254 2325 6.661805 GGAAAATAACATTACCACTGGGAAGA 59.338 38.462 0.00 0.00 38.05 2.87
2255 2326 7.342026 GGAAAATAACATTACCACTGGGAAGAT 59.658 37.037 0.00 0.00 38.05 2.40
2256 2327 9.403583 GAAAATAACATTACCACTGGGAAGATA 57.596 33.333 0.00 0.00 38.05 1.98
2257 2328 9.936329 AAAATAACATTACCACTGGGAAGATAT 57.064 29.630 0.00 0.00 38.05 1.63
2261 2332 7.872061 ACATTACCACTGGGAAGATATATCA 57.128 36.000 15.08 0.00 38.05 2.15
2262 2333 7.911651 ACATTACCACTGGGAAGATATATCAG 58.088 38.462 15.08 6.21 38.05 2.90
2263 2334 6.935240 TTACCACTGGGAAGATATATCAGG 57.065 41.667 15.08 5.91 38.05 3.86
2264 2335 4.832492 ACCACTGGGAAGATATATCAGGT 58.168 43.478 15.08 6.45 38.05 4.00
2265 2336 4.594920 ACCACTGGGAAGATATATCAGGTG 59.405 45.833 15.08 11.99 38.05 4.00
2266 2337 4.840680 CCACTGGGAAGATATATCAGGTGA 59.159 45.833 15.08 0.00 35.59 4.02
2267 2338 5.046735 CCACTGGGAAGATATATCAGGTGAG 60.047 48.000 15.08 7.35 35.59 3.51
2268 2339 4.530161 ACTGGGAAGATATATCAGGTGAGC 59.470 45.833 15.08 0.00 0.00 4.26
2269 2340 4.492646 TGGGAAGATATATCAGGTGAGCA 58.507 43.478 15.08 0.00 0.00 4.26
2270 2341 4.284490 TGGGAAGATATATCAGGTGAGCAC 59.716 45.833 15.08 0.00 0.00 4.40
2271 2342 4.530161 GGGAAGATATATCAGGTGAGCACT 59.470 45.833 15.08 0.00 0.00 4.40
2272 2343 5.337169 GGGAAGATATATCAGGTGAGCACTC 60.337 48.000 15.08 0.00 0.00 3.51
2273 2344 5.337169 GGAAGATATATCAGGTGAGCACTCC 60.337 48.000 15.08 0.00 0.00 3.85
2274 2345 4.093011 AGATATATCAGGTGAGCACTCCC 58.907 47.826 15.08 0.00 0.00 4.30
2275 2346 1.428869 ATATCAGGTGAGCACTCCCC 58.571 55.000 0.16 0.00 0.00 4.81
2276 2347 0.691078 TATCAGGTGAGCACTCCCCC 60.691 60.000 0.16 0.00 0.00 5.40
2277 2348 2.770868 ATCAGGTGAGCACTCCCCCA 62.771 60.000 0.16 0.00 0.00 4.96
2278 2349 2.608988 AGGTGAGCACTCCCCCAG 60.609 66.667 0.16 0.00 0.00 4.45
2279 2350 3.721706 GGTGAGCACTCCCCCAGG 61.722 72.222 0.16 0.00 0.00 4.45
2280 2351 2.607750 GTGAGCACTCCCCCAGGA 60.608 66.667 0.00 0.00 41.08 3.86
2281 2352 2.206900 TGAGCACTCCCCCAGGAA 59.793 61.111 0.00 0.00 43.40 3.36
2289 2588 0.613012 CTCCCCCAGGAAAAGGCTTG 60.613 60.000 0.00 0.00 43.40 4.01
2299 2598 2.297033 GGAAAAGGCTTGCTGATTGTCA 59.703 45.455 0.00 0.00 0.00 3.58
3116 3461 6.357579 TCCCAGTTGTAATTTGATTGCATT 57.642 33.333 0.00 0.00 34.86 3.56
3157 3502 9.267071 AGCAGTTATTAATATTTTTCCCAACCT 57.733 29.630 0.00 0.00 0.00 3.50
3623 3968 3.711704 TGACCCTCATATTCTTGTCTCCC 59.288 47.826 0.00 0.00 0.00 4.30
3703 4049 4.890581 GGTCTTACTCCTGATCTTCTAGCA 59.109 45.833 0.00 0.00 0.00 3.49
4106 4452 8.391106 GTTGAGAACATACTTAACATCCATGAC 58.609 37.037 0.00 0.00 36.71 3.06
4109 4455 6.757010 AGAACATACTTAACATCCATGACGTC 59.243 38.462 9.11 9.11 0.00 4.34
4277 4623 2.978156 TCCAGAACCAAAAGGCTCAT 57.022 45.000 0.00 0.00 0.00 2.90
5308 5657 7.519809 CGATGAACTTAATATGCGATGGGAAAA 60.520 37.037 0.00 0.00 0.00 2.29
5346 5695 1.608590 CATGTTGGTGTCCACAGGAAC 59.391 52.381 0.00 0.54 31.38 3.62
5574 5923 7.062839 CCGTTCACAAATACAATATGTTTTGGG 59.937 37.037 15.63 13.43 35.31 4.12
5590 5939 7.176589 TGTTTTGGGTATTTCAATATGGACC 57.823 36.000 0.00 0.00 0.00 4.46
5703 6052 9.537852 TGAACGTAGGGAGTACCATTTATATAT 57.462 33.333 0.00 0.00 43.89 0.86
5903 6252 1.868713 TTGACACCTTATCCCGCCTA 58.131 50.000 0.00 0.00 0.00 3.93
6034 6383 6.243216 ACCTCCGCCTACATATTTAGAAAA 57.757 37.500 0.00 0.00 0.00 2.29
6153 6505 9.844790 CAGAAATGACAAATTAAGTTGATAGCA 57.155 29.630 21.48 13.19 32.59 3.49
6613 6967 9.722056 GATTACATTTGTAGTGCATTTAGAAGG 57.278 33.333 0.00 0.00 0.00 3.46
6614 6968 6.515272 ACATTTGTAGTGCATTTAGAAGGG 57.485 37.500 0.00 0.00 0.00 3.95
6615 6969 5.418840 ACATTTGTAGTGCATTTAGAAGGGG 59.581 40.000 0.00 0.00 0.00 4.79
6616 6970 4.919774 TTGTAGTGCATTTAGAAGGGGA 57.080 40.909 0.00 0.00 0.00 4.81
6617 6971 4.487714 TGTAGTGCATTTAGAAGGGGAG 57.512 45.455 0.00 0.00 0.00 4.30
6618 6972 2.426842 AGTGCATTTAGAAGGGGAGC 57.573 50.000 0.00 0.00 0.00 4.70
6619 6973 1.064389 AGTGCATTTAGAAGGGGAGCC 60.064 52.381 0.00 0.00 0.00 4.70
6620 6974 1.064389 GTGCATTTAGAAGGGGAGCCT 60.064 52.381 0.00 0.00 0.00 4.58
6621 6975 1.640670 TGCATTTAGAAGGGGAGCCTT 59.359 47.619 0.00 0.00 0.00 4.35
6622 6976 2.027385 GCATTTAGAAGGGGAGCCTTG 58.973 52.381 0.00 0.00 0.00 3.61
6623 6977 2.659428 CATTTAGAAGGGGAGCCTTGG 58.341 52.381 0.00 0.00 0.00 3.61
6624 6978 0.331616 TTTAGAAGGGGAGCCTTGGC 59.668 55.000 2.97 2.97 0.00 4.52
6625 6979 1.910580 TTAGAAGGGGAGCCTTGGCG 61.911 60.000 5.95 0.00 0.00 5.69
6633 6987 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
6634 6988 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
6635 6989 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
6636 6990 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
6637 6991 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
6638 6992 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
6639 6993 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
6644 6998 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
6645 6999 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
6646 7000 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
6647 7001 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
6648 7002 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
6649 7003 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
6650 7004 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
6651 7005 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
6652 7006 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
6653 7007 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
6654 7008 2.195567 GCTGCTGCCTTGTGACCAA 61.196 57.895 3.85 0.00 0.00 3.67
6655 7009 1.954528 CTGCTGCCTTGTGACCAAG 59.045 57.895 0.00 0.00 46.33 3.61
6668 7022 4.695560 CCAAGAGGTCACGGGTTC 57.304 61.111 0.00 0.00 0.00 3.62
6669 7023 1.752198 CCAAGAGGTCACGGGTTCA 59.248 57.895 0.00 0.00 0.00 3.18
6670 7024 0.107831 CCAAGAGGTCACGGGTTCAA 59.892 55.000 0.00 0.00 0.00 2.69
6671 7025 1.512926 CAAGAGGTCACGGGTTCAAG 58.487 55.000 0.00 0.00 0.00 3.02
6672 7026 1.129058 AAGAGGTCACGGGTTCAAGT 58.871 50.000 0.00 0.00 0.00 3.16
6673 7027 0.680061 AGAGGTCACGGGTTCAAGTC 59.320 55.000 0.00 0.00 0.00 3.01
6674 7028 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
6675 7029 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
6676 7030 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
6677 7031 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
6678 7032 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
6679 7033 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
6680 7034 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
6681 7035 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
6682 7036 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
6696 7050 4.431416 TGGAAACAGCCTCTTACAGAAA 57.569 40.909 0.00 0.00 35.01 2.52
6697 7051 4.985538 TGGAAACAGCCTCTTACAGAAAT 58.014 39.130 0.00 0.00 35.01 2.17
6698 7052 4.761739 TGGAAACAGCCTCTTACAGAAATG 59.238 41.667 0.00 0.00 35.01 2.32
6699 7053 4.762251 GGAAACAGCCTCTTACAGAAATGT 59.238 41.667 0.00 0.00 0.00 2.71
6700 7054 5.938125 GGAAACAGCCTCTTACAGAAATGTA 59.062 40.000 0.00 0.00 0.00 2.29
6701 7055 6.092807 GGAAACAGCCTCTTACAGAAATGTAG 59.907 42.308 0.00 0.00 0.00 2.74
6702 7056 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
6703 7057 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
6704 7058 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
6705 7059 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
6706 7060 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
6707 7061 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
6708 7062 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
6709 7063 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
6710 7064 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
6711 7065 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
6712 7066 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
6713 7067 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
6714 7068 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
6715 7069 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
6716 7070 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
6717 7071 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
6718 7072 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
6719 7073 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
6720 7074 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
6721 7075 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
6722 7076 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
6723 7077 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
6724 7078 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
6725 7079 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
6726 7080 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
6727 7081 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
6728 7082 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
6729 7083 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
6730 7084 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
6731 7085 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
6732 7086 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
6733 7087 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
6738 7092 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
6739 7093 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
6740 7094 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
6741 7095 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
6742 7096 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
6743 7097 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
6744 7098 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
6745 7099 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
6746 7100 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
6753 7107 4.735599 GACCCTTCCCCGGACCCT 62.736 72.222 0.73 0.00 0.00 4.34
6780 7134 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
6781 7135 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
6782 7136 3.391665 GAGCTACATGCACCGGGCT 62.392 63.158 6.32 0.81 45.94 5.19
6783 7137 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
6784 7138 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
6785 7139 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
6847 7201 2.560542 TCCTTGCTTTGTTGTTGTGTGT 59.439 40.909 0.00 0.00 0.00 3.72
6878 7233 6.267496 ACCTTACTGTGGTATCATTTTTGC 57.733 37.500 0.00 0.00 35.80 3.68
7277 7635 4.572389 GTGAAGAGTTCAACACAGACACAT 59.428 41.667 0.00 0.00 42.15 3.21
7281 7639 3.470709 AGTTCAACACAGACACATCAGG 58.529 45.455 0.00 0.00 0.00 3.86
7584 7942 0.459489 AACTGTTTGTGCGGCATGTT 59.541 45.000 5.72 2.65 0.00 2.71
7599 7957 1.135859 CATGTTGTCAGGAGCTTTCGC 60.136 52.381 0.00 0.00 0.00 4.70
7790 8148 2.122783 ACCCCGTGTTATTCATGTGG 57.877 50.000 0.00 0.00 36.79 4.17
7888 8246 3.159472 TGTTCCAATGCTTGAGAATGCT 58.841 40.909 0.00 0.00 0.00 3.79
7924 8282 5.128499 TGTTGGTTGTGATGAAAGTGGAAAT 59.872 36.000 0.00 0.00 0.00 2.17
8255 8615 0.608130 ATACTGGCAGCGACTGAACA 59.392 50.000 15.89 7.47 32.44 3.18
8355 8715 7.227156 ACTGTGTTCTCAAACTTGATTATCCT 58.773 34.615 0.00 0.00 36.46 3.24
8761 9121 9.292195 CTGGTGAAATAAGTACCCTTTTAGAAA 57.708 33.333 0.00 0.00 33.51 2.52
9058 9436 5.617528 TCACAACCTGACACCTAAGTTAA 57.382 39.130 0.00 0.00 0.00 2.01
9155 9541 3.675613 TCCAGCCCAGGATAAGGATAAA 58.324 45.455 0.00 0.00 31.23 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.604614 GGGAACAAAACAAGCGCTACTG 60.605 50.000 12.05 9.38 0.00 2.74
1 2 1.607148 GGGAACAAAACAAGCGCTACT 59.393 47.619 12.05 0.00 0.00 2.57
2 3 1.662026 CGGGAACAAAACAAGCGCTAC 60.662 52.381 12.05 0.00 0.00 3.58
3 4 0.589223 CGGGAACAAAACAAGCGCTA 59.411 50.000 12.05 0.00 0.00 4.26
4 5 1.358759 CGGGAACAAAACAAGCGCT 59.641 52.632 2.64 2.64 0.00 5.92
5 6 2.300066 GCGGGAACAAAACAAGCGC 61.300 57.895 0.00 0.00 0.00 5.92
6 7 2.008697 CGCGGGAACAAAACAAGCG 61.009 57.895 0.00 0.00 40.14 4.68
7 8 2.300066 GCGCGGGAACAAAACAAGC 61.300 57.895 8.83 0.00 0.00 4.01
8 9 0.589223 TAGCGCGGGAACAAAACAAG 59.411 50.000 8.83 0.00 0.00 3.16
9 10 0.308376 GTAGCGCGGGAACAAAACAA 59.692 50.000 8.83 0.00 0.00 2.83
10 11 0.533308 AGTAGCGCGGGAACAAAACA 60.533 50.000 8.83 0.00 0.00 2.83
11 12 0.110373 CAGTAGCGCGGGAACAAAAC 60.110 55.000 8.83 0.00 0.00 2.43
12 13 0.249953 TCAGTAGCGCGGGAACAAAA 60.250 50.000 8.83 0.00 0.00 2.44
13 14 0.036765 ATCAGTAGCGCGGGAACAAA 60.037 50.000 8.83 0.00 0.00 2.83
14 15 0.818938 TATCAGTAGCGCGGGAACAA 59.181 50.000 8.83 0.00 0.00 2.83
15 16 0.818938 TTATCAGTAGCGCGGGAACA 59.181 50.000 8.83 0.00 0.00 3.18
16 17 2.150397 ATTATCAGTAGCGCGGGAAC 57.850 50.000 8.83 0.00 0.00 3.62
17 18 2.902705 AATTATCAGTAGCGCGGGAA 57.097 45.000 8.83 0.00 0.00 3.97
18 19 2.352421 GCTAATTATCAGTAGCGCGGGA 60.352 50.000 8.83 0.00 36.88 5.14
19 20 1.993370 GCTAATTATCAGTAGCGCGGG 59.007 52.381 8.83 0.00 36.88 6.13
26 27 6.778069 AGAGGTGCTACTGCTAATTATCAGTA 59.222 38.462 21.81 21.81 42.81 2.74
27 28 5.600484 AGAGGTGCTACTGCTAATTATCAGT 59.400 40.000 21.90 21.90 44.76 3.41
28 29 6.095432 AGAGGTGCTACTGCTAATTATCAG 57.905 41.667 13.50 13.50 40.48 2.90
29 30 6.485830 AAGAGGTGCTACTGCTAATTATCA 57.514 37.500 0.00 0.00 40.48 2.15
30 31 7.170658 CAGAAAGAGGTGCTACTGCTAATTATC 59.829 40.741 0.00 0.00 40.48 1.75
31 32 6.989169 CAGAAAGAGGTGCTACTGCTAATTAT 59.011 38.462 0.00 0.00 40.48 1.28
32 33 6.070767 ACAGAAAGAGGTGCTACTGCTAATTA 60.071 38.462 0.00 0.00 40.48 1.40
33 34 5.181748 CAGAAAGAGGTGCTACTGCTAATT 58.818 41.667 0.00 0.00 40.48 1.40
34 35 4.223923 ACAGAAAGAGGTGCTACTGCTAAT 59.776 41.667 0.00 0.00 40.48 1.73
35 36 3.578716 ACAGAAAGAGGTGCTACTGCTAA 59.421 43.478 0.00 0.00 40.48 3.09
36 37 3.165875 ACAGAAAGAGGTGCTACTGCTA 58.834 45.455 0.00 0.00 40.48 3.49
37 38 1.974236 ACAGAAAGAGGTGCTACTGCT 59.026 47.619 0.00 0.00 40.48 4.24
38 39 2.464157 ACAGAAAGAGGTGCTACTGC 57.536 50.000 0.00 0.00 35.77 4.40
39 40 3.673594 CGGTACAGAAAGAGGTGCTACTG 60.674 52.174 0.00 0.00 37.26 2.74
40 41 2.492484 CGGTACAGAAAGAGGTGCTACT 59.508 50.000 0.00 0.00 0.00 2.57
41 42 2.877335 CGGTACAGAAAGAGGTGCTAC 58.123 52.381 0.00 0.00 0.00 3.58
42 43 1.203994 GCGGTACAGAAAGAGGTGCTA 59.796 52.381 0.00 0.00 0.00 3.49
43 44 0.037232 GCGGTACAGAAAGAGGTGCT 60.037 55.000 0.00 0.00 0.00 4.40
44 45 1.352156 CGCGGTACAGAAAGAGGTGC 61.352 60.000 0.00 0.00 0.00 5.01
45 46 1.352156 GCGCGGTACAGAAAGAGGTG 61.352 60.000 8.83 0.00 0.00 4.00
46 47 1.080025 GCGCGGTACAGAAAGAGGT 60.080 57.895 8.83 0.00 0.00 3.85
47 48 1.078759 CAGCGCGGTACAGAAAGAGG 61.079 60.000 11.92 0.00 0.00 3.69
48 49 1.687494 GCAGCGCGGTACAGAAAGAG 61.687 60.000 11.92 0.00 0.00 2.85
49 50 1.736645 GCAGCGCGGTACAGAAAGA 60.737 57.895 11.92 0.00 0.00 2.52
50 51 1.738099 AGCAGCGCGGTACAGAAAG 60.738 57.895 11.92 0.00 0.00 2.62
51 52 2.027073 CAGCAGCGCGGTACAGAAA 61.027 57.895 11.92 0.00 0.00 2.52
52 53 2.432456 CAGCAGCGCGGTACAGAA 60.432 61.111 11.92 0.00 0.00 3.02
63 64 0.801251 CACAGAACCTTAGCAGCAGC 59.199 55.000 0.00 0.00 42.56 5.25
64 65 2.175878 ACACAGAACCTTAGCAGCAG 57.824 50.000 0.00 0.00 0.00 4.24
65 66 3.981071 ATACACAGAACCTTAGCAGCA 57.019 42.857 0.00 0.00 0.00 4.41
66 67 4.811557 CCTTATACACAGAACCTTAGCAGC 59.188 45.833 0.00 0.00 0.00 5.25
67 68 5.978814 ACCTTATACACAGAACCTTAGCAG 58.021 41.667 0.00 0.00 0.00 4.24
68 69 6.368779 AACCTTATACACAGAACCTTAGCA 57.631 37.500 0.00 0.00 0.00 3.49
69 70 7.148289 GGAAAACCTTATACACAGAACCTTAGC 60.148 40.741 0.00 0.00 0.00 3.09
70 71 7.336176 GGGAAAACCTTATACACAGAACCTTAG 59.664 40.741 0.00 0.00 35.85 2.18
71 72 7.170277 GGGAAAACCTTATACACAGAACCTTA 58.830 38.462 0.00 0.00 35.85 2.69
72 73 6.008331 GGGAAAACCTTATACACAGAACCTT 58.992 40.000 0.00 0.00 35.85 3.50
73 74 5.567430 GGGAAAACCTTATACACAGAACCT 58.433 41.667 0.00 0.00 35.85 3.50
74 75 5.892160 GGGAAAACCTTATACACAGAACC 57.108 43.478 0.00 0.00 35.85 3.62
87 88 8.885884 GTGGTTAGACACTACTAGGGAAAACCT 61.886 44.444 15.80 0.00 44.46 3.50
88 89 5.246883 TGGTTAGACACTACTAGGGAAAACC 59.753 44.000 11.31 11.31 40.67 3.27
89 90 6.162079 GTGGTTAGACACTACTAGGGAAAAC 58.838 44.000 0.00 0.00 38.32 2.43
90 91 5.840149 TGTGGTTAGACACTACTAGGGAAAA 59.160 40.000 0.00 0.00 41.84 2.29
91 92 5.396485 TGTGGTTAGACACTACTAGGGAAA 58.604 41.667 0.00 0.00 41.84 3.13
92 93 5.001833 TGTGGTTAGACACTACTAGGGAA 57.998 43.478 0.00 0.00 41.84 3.97
93 94 4.662966 TGTGGTTAGACACTACTAGGGA 57.337 45.455 0.00 0.00 41.84 4.20
94 95 4.380233 CGTTGTGGTTAGACACTACTAGGG 60.380 50.000 8.69 0.00 42.33 3.53
95 96 4.730657 CGTTGTGGTTAGACACTACTAGG 58.269 47.826 8.69 0.00 42.33 3.02
96 97 4.164294 GCGTTGTGGTTAGACACTACTAG 58.836 47.826 8.69 0.00 42.33 2.57
97 98 3.057315 GGCGTTGTGGTTAGACACTACTA 60.057 47.826 8.69 0.00 42.33 1.82
98 99 2.288640 GGCGTTGTGGTTAGACACTACT 60.289 50.000 8.69 0.00 42.33 2.57
99 100 2.064014 GGCGTTGTGGTTAGACACTAC 58.936 52.381 0.00 0.00 41.52 2.73
100 101 1.001181 GGGCGTTGTGGTTAGACACTA 59.999 52.381 0.00 0.00 41.84 2.74
101 102 0.250166 GGGCGTTGTGGTTAGACACT 60.250 55.000 0.00 0.00 41.84 3.55
102 103 1.232621 GGGGCGTTGTGGTTAGACAC 61.233 60.000 0.00 0.00 41.68 3.67
103 104 1.071814 GGGGCGTTGTGGTTAGACA 59.928 57.895 0.00 0.00 0.00 3.41
104 105 0.535553 TTGGGGCGTTGTGGTTAGAC 60.536 55.000 0.00 0.00 0.00 2.59
105 106 0.183014 TTTGGGGCGTTGTGGTTAGA 59.817 50.000 0.00 0.00 0.00 2.10
106 107 0.596082 CTTTGGGGCGTTGTGGTTAG 59.404 55.000 0.00 0.00 0.00 2.34
107 108 0.183014 TCTTTGGGGCGTTGTGGTTA 59.817 50.000 0.00 0.00 0.00 2.85
108 109 1.076632 TCTTTGGGGCGTTGTGGTT 60.077 52.632 0.00 0.00 0.00 3.67
109 110 1.528309 CTCTTTGGGGCGTTGTGGT 60.528 57.895 0.00 0.00 0.00 4.16
110 111 0.609131 ATCTCTTTGGGGCGTTGTGG 60.609 55.000 0.00 0.00 0.00 4.17
111 112 0.523072 CATCTCTTTGGGGCGTTGTG 59.477 55.000 0.00 0.00 0.00 3.33
112 113 0.609131 CCATCTCTTTGGGGCGTTGT 60.609 55.000 0.00 0.00 32.80 3.32
113 114 1.937546 GCCATCTCTTTGGGGCGTTG 61.938 60.000 0.00 0.00 37.24 4.10
114 115 1.678970 GCCATCTCTTTGGGGCGTT 60.679 57.895 0.00 0.00 37.24 4.84
115 116 2.044946 GCCATCTCTTTGGGGCGT 60.045 61.111 0.00 0.00 37.24 5.68
117 118 1.755783 CCTGCCATCTCTTTGGGGC 60.756 63.158 0.00 0.00 46.58 5.80
118 119 0.332632 TTCCTGCCATCTCTTTGGGG 59.667 55.000 0.00 0.00 37.24 4.96
150 151 0.607217 TCTGGACGTAGCCGACAGAA 60.607 55.000 10.20 0.00 43.21 3.02
153 154 3.271014 GTCTGGACGTAGCCGACA 58.729 61.111 10.94 0.00 37.88 4.35
192 193 1.014564 CGAGTTTGCCTTCCGGACTC 61.015 60.000 1.83 5.27 34.78 3.36
199 200 4.219802 GCTACTTTTTCGAGTTTGCCTTC 58.780 43.478 0.00 0.00 0.00 3.46
202 203 2.571206 CGCTACTTTTTCGAGTTTGCC 58.429 47.619 0.00 0.00 0.00 4.52
203 204 2.571206 CCGCTACTTTTTCGAGTTTGC 58.429 47.619 0.00 0.00 0.00 3.68
211 212 0.248094 GATGGCGCCGCTACTTTTTC 60.248 55.000 23.90 3.34 0.00 2.29
212 213 1.654023 GGATGGCGCCGCTACTTTTT 61.654 55.000 23.90 0.00 0.00 1.94
214 215 2.513897 GGATGGCGCCGCTACTTT 60.514 61.111 23.90 0.00 0.00 2.66
247 248 1.975680 AGGGTTTTCTAGTCCTCGCAA 59.024 47.619 0.00 0.00 0.00 4.85
256 257 7.972832 CGAGTAGTTTAGGTTAGGGTTTTCTAG 59.027 40.741 0.00 0.00 0.00 2.43
259 260 5.871524 CCGAGTAGTTTAGGTTAGGGTTTTC 59.128 44.000 0.00 0.00 0.00 2.29
298 302 1.915983 GGTGACAGGGAGGGGAATC 59.084 63.158 0.00 0.00 0.00 2.52
332 336 4.093291 CTTGCCTCCGCTCTGCCT 62.093 66.667 0.00 0.00 35.36 4.75
340 344 2.046892 CCTGTGGACTTGCCTCCG 60.047 66.667 0.00 0.00 37.63 4.63
342 346 1.073897 AAGCCTGTGGACTTGCCTC 59.926 57.895 0.00 0.00 37.63 4.70
354 358 0.954452 AAACTTCTTCGGCAAGCCTG 59.046 50.000 9.73 3.19 0.00 4.85
366 370 6.239036 GGGCAAACTCTTTCATACAAACTTCT 60.239 38.462 0.00 0.00 0.00 2.85
375 379 4.258543 CGGTTAGGGCAAACTCTTTCATA 58.741 43.478 2.56 0.00 0.00 2.15
377 381 2.158726 ACGGTTAGGGCAAACTCTTTCA 60.159 45.455 2.56 0.00 0.00 2.69
379 383 2.105993 AGACGGTTAGGGCAAACTCTTT 59.894 45.455 2.56 0.00 0.00 2.52
394 398 7.389053 CGTATAATAACTCTAACCCTAGACGGT 59.611 40.741 0.00 0.00 37.93 4.83
396 400 7.389053 ACCGTATAATAACTCTAACCCTAGACG 59.611 40.741 0.00 0.00 30.68 4.18
397 401 8.628630 ACCGTATAATAACTCTAACCCTAGAC 57.371 38.462 0.00 0.00 30.68 2.59
398 402 9.646522 AAACCGTATAATAACTCTAACCCTAGA 57.353 33.333 0.00 0.00 33.00 2.43
411 415 9.562583 GAAAAAGCATGTCAAACCGTATAATAA 57.437 29.630 0.00 0.00 0.00 1.40
421 425 6.419116 GGAAGAGAAGAAAAAGCATGTCAAAC 59.581 38.462 0.00 0.00 0.00 2.93
428 432 4.769488 GGGAAGGAAGAGAAGAAAAAGCAT 59.231 41.667 0.00 0.00 0.00 3.79
438 442 1.152271 AGGACCAGGGAAGGAAGAGAA 59.848 52.381 0.00 0.00 0.00 2.87
440 444 2.552093 TAGGACCAGGGAAGGAAGAG 57.448 55.000 0.00 0.00 0.00 2.85
448 452 2.026262 GCAACTTCAATAGGACCAGGGA 60.026 50.000 0.00 0.00 0.00 4.20
450 454 2.009774 CGCAACTTCAATAGGACCAGG 58.990 52.381 0.00 0.00 0.00 4.45
453 457 1.666189 GAGCGCAACTTCAATAGGACC 59.334 52.381 11.47 0.00 0.00 4.46
455 459 2.346803 GTGAGCGCAACTTCAATAGGA 58.653 47.619 11.47 0.00 0.00 2.94
460 464 2.250939 CGGGTGAGCGCAACTTCAA 61.251 57.895 11.47 0.00 0.00 2.69
462 466 2.357034 TCGGGTGAGCGCAACTTC 60.357 61.111 11.47 0.00 0.00 3.01
468 472 2.925162 AAATAGCCTCGGGTGAGCGC 62.925 60.000 0.00 0.00 41.13 5.92
469 473 0.387929 TAAATAGCCTCGGGTGAGCG 59.612 55.000 0.00 0.00 41.13 5.03
560 564 3.003480 GGACACAGAGTAGGCATTCAAC 58.997 50.000 0.00 0.00 0.00 3.18
569 573 1.469940 GCATCCACGGACACAGAGTAG 60.470 57.143 0.00 0.00 0.00 2.57
570 574 0.530744 GCATCCACGGACACAGAGTA 59.469 55.000 0.00 0.00 0.00 2.59
572 576 1.807165 CGCATCCACGGACACAGAG 60.807 63.158 0.00 0.00 0.00 3.35
575 579 2.048597 GACGCATCCACGGACACA 60.049 61.111 0.00 0.00 37.37 3.72
578 583 0.460284 ATTCTGACGCATCCACGGAC 60.460 55.000 0.00 0.00 37.37 4.79
583 588 3.578688 CGATCATATTCTGACGCATCCA 58.421 45.455 0.00 0.00 36.48 3.41
588 593 2.848887 CGATCCGATCATATTCTGACGC 59.151 50.000 9.07 0.00 36.48 5.19
593 598 5.011125 ACCTGAAACGATCCGATCATATTCT 59.989 40.000 9.07 0.00 0.00 2.40
594 599 5.230942 ACCTGAAACGATCCGATCATATTC 58.769 41.667 9.07 9.23 0.00 1.75
597 602 3.005472 GGACCTGAAACGATCCGATCATA 59.995 47.826 9.07 0.00 0.00 2.15
634 670 3.143728 TCTTCTTCTTTTGCGGGGTAAC 58.856 45.455 0.00 0.00 0.00 2.50
635 671 3.495434 TCTTCTTCTTTTGCGGGGTAA 57.505 42.857 0.00 0.00 0.00 2.85
636 672 3.343617 CATCTTCTTCTTTTGCGGGGTA 58.656 45.455 0.00 0.00 0.00 3.69
637 673 2.162681 CATCTTCTTCTTTTGCGGGGT 58.837 47.619 0.00 0.00 0.00 4.95
638 674 1.135286 GCATCTTCTTCTTTTGCGGGG 60.135 52.381 0.00 0.00 0.00 5.73
639 675 1.135286 GGCATCTTCTTCTTTTGCGGG 60.135 52.381 0.00 0.00 34.17 6.13
640 676 1.466360 CGGCATCTTCTTCTTTTGCGG 60.466 52.381 0.00 0.00 34.17 5.69
641 677 1.197721 ACGGCATCTTCTTCTTTTGCG 59.802 47.619 0.00 0.00 34.17 4.85
642 678 2.997485 ACGGCATCTTCTTCTTTTGC 57.003 45.000 0.00 0.00 0.00 3.68
643 679 5.390991 GGAGTAACGGCATCTTCTTCTTTTG 60.391 44.000 0.00 0.00 0.00 2.44
644 680 4.695928 GGAGTAACGGCATCTTCTTCTTTT 59.304 41.667 0.00 0.00 0.00 2.27
645 681 4.254492 GGAGTAACGGCATCTTCTTCTTT 58.746 43.478 0.00 0.00 0.00 2.52
646 682 3.260884 TGGAGTAACGGCATCTTCTTCTT 59.739 43.478 0.00 0.00 0.00 2.52
647 683 2.832129 TGGAGTAACGGCATCTTCTTCT 59.168 45.455 0.00 0.00 0.00 2.85
648 684 3.247006 TGGAGTAACGGCATCTTCTTC 57.753 47.619 0.00 0.00 0.00 2.87
649 685 3.914426 ATGGAGTAACGGCATCTTCTT 57.086 42.857 0.00 0.00 0.00 2.52
650 686 5.552870 ATTATGGAGTAACGGCATCTTCT 57.447 39.130 0.00 0.00 0.00 2.85
651 687 7.602644 TGAATATTATGGAGTAACGGCATCTTC 59.397 37.037 0.00 0.00 0.00 2.87
652 688 7.450074 TGAATATTATGGAGTAACGGCATCTT 58.550 34.615 0.00 0.00 0.00 2.40
653 689 7.004555 TGAATATTATGGAGTAACGGCATCT 57.995 36.000 0.00 0.00 0.00 2.90
654 690 7.549134 TGATGAATATTATGGAGTAACGGCATC 59.451 37.037 0.00 0.00 0.00 3.91
655 691 7.334421 GTGATGAATATTATGGAGTAACGGCAT 59.666 37.037 0.00 0.00 0.00 4.40
656 692 6.649141 GTGATGAATATTATGGAGTAACGGCA 59.351 38.462 0.00 0.00 0.00 5.69
657 693 6.092259 GGTGATGAATATTATGGAGTAACGGC 59.908 42.308 0.00 0.00 0.00 5.68
658 694 6.594159 GGGTGATGAATATTATGGAGTAACGG 59.406 42.308 0.00 0.00 0.00 4.44
659 695 7.386851 AGGGTGATGAATATTATGGAGTAACG 58.613 38.462 0.00 0.00 0.00 3.18
721 757 0.308068 TGCTATCAGCTCGTAGTCGC 59.692 55.000 0.00 0.00 42.97 5.19
822 871 4.802051 TCTTGGGATGCGGCTGGC 62.802 66.667 0.00 0.00 43.96 4.85
832 881 4.258457 TGGGTTTCTTTCTTTCTTGGGA 57.742 40.909 0.00 0.00 0.00 4.37
854 903 0.033991 CTCCTCCAACTCCTCCTCGA 60.034 60.000 0.00 0.00 0.00 4.04
863 912 0.689623 CTGTTGCTCCTCCTCCAACT 59.310 55.000 0.00 0.00 39.53 3.16
864 913 0.957888 GCTGTTGCTCCTCCTCCAAC 60.958 60.000 0.00 0.00 39.32 3.77
865 914 1.376466 GCTGTTGCTCCTCCTCCAA 59.624 57.895 0.00 0.00 36.03 3.53
866 915 1.418097 TTGCTGTTGCTCCTCCTCCA 61.418 55.000 0.00 0.00 40.48 3.86
867 916 0.957888 GTTGCTGTTGCTCCTCCTCC 60.958 60.000 0.00 0.00 40.48 4.30
868 917 1.294659 CGTTGCTGTTGCTCCTCCTC 61.295 60.000 0.00 0.00 40.48 3.71
869 918 1.302033 CGTTGCTGTTGCTCCTCCT 60.302 57.895 0.00 0.00 40.48 3.69
870 919 1.301716 TCGTTGCTGTTGCTCCTCC 60.302 57.895 0.00 0.00 40.48 4.30
871 920 0.880278 TGTCGTTGCTGTTGCTCCTC 60.880 55.000 0.00 0.00 40.48 3.71
954 1003 4.067512 AGGCTGGCTCGGAGGAGA 62.068 66.667 7.20 0.00 43.27 3.71
1164 1220 4.798682 GAAGGGCGGGAGGGGAGA 62.799 72.222 0.00 0.00 0.00 3.71
1282 1338 1.548357 CGCCCCCTAGGAGATGATGG 61.548 65.000 11.48 0.00 37.72 3.51
1353 1409 1.701031 TTCTGGGTCAGGGTCGCAAA 61.701 55.000 0.00 0.00 31.51 3.68
1370 1430 1.131315 GAACTCAGGGAAGCGCAATTC 59.869 52.381 11.47 5.35 0.00 2.17
1423 1483 3.582998 ATCGTCATGAAACCATGGGAT 57.417 42.857 18.09 3.58 41.25 3.85
1495 1560 1.191096 CGAACGCAAATTAGCATGCC 58.809 50.000 15.66 0.00 39.39 4.40
1505 1570 3.810941 AGAACAAGGAATACGAACGCAAA 59.189 39.130 0.00 0.00 0.00 3.68
1658 1723 7.454260 GATTCCAGAATCACAGTACCTTTTT 57.546 36.000 14.15 0.00 44.89 1.94
1685 1752 1.023513 ACTCAATGCGGCAAGAGCTC 61.024 55.000 26.00 5.27 41.70 4.09
1776 1843 3.714280 AGGGTGCCACCTTTTAAACAATT 59.286 39.130 14.71 0.00 37.69 2.32
1777 1844 3.313791 AGGGTGCCACCTTTTAAACAAT 58.686 40.909 14.71 0.00 37.69 2.71
1778 1845 2.753247 AGGGTGCCACCTTTTAAACAA 58.247 42.857 14.71 0.00 37.69 2.83
1808 1877 0.701731 TTGGCCCAAAAGCTAGCCTA 59.298 50.000 12.13 3.37 45.94 3.93
1844 1913 4.006989 TGTTCACTTATCCCCAATGTTCG 58.993 43.478 0.00 0.00 0.00 3.95
1860 1929 6.827641 ACGTTACACAATATCACATGTTCAC 58.172 36.000 0.00 0.00 0.00 3.18
1862 1931 8.722342 AAAACGTTACACAATATCACATGTTC 57.278 30.769 0.00 0.00 0.00 3.18
1902 1971 4.953940 AGCCAATCCAGCAAAGTAAAAA 57.046 36.364 0.00 0.00 0.00 1.94
1903 1972 4.953940 AAGCCAATCCAGCAAAGTAAAA 57.046 36.364 0.00 0.00 0.00 1.52
1910 1979 1.545582 GTAGCAAAGCCAATCCAGCAA 59.454 47.619 0.00 0.00 0.00 3.91
1938 2007 3.686016 TCCTAACTCTGCAAATGGGAAC 58.314 45.455 0.00 0.00 0.00 3.62
1993 2062 5.784578 ATGGGTCTGTAAAAACAGGAAAC 57.215 39.130 5.74 0.00 38.23 2.78
2002 2071 8.212312 TCTGTGTTTAAGTATGGGTCTGTAAAA 58.788 33.333 0.00 0.00 0.00 1.52
2047 2118 2.363306 ACACCTCACCATGCTCAAAA 57.637 45.000 0.00 0.00 0.00 2.44
2199 2270 2.993899 AGTAACATCCAAGAAACGCTCG 59.006 45.455 0.00 0.00 0.00 5.03
2235 2306 9.387397 TGATATATCTTCCCAGTGGTAATGTTA 57.613 33.333 13.79 0.00 0.00 2.41
2236 2307 8.275187 TGATATATCTTCCCAGTGGTAATGTT 57.725 34.615 13.79 0.00 0.00 2.71
2237 2308 7.038017 CCTGATATATCTTCCCAGTGGTAATGT 60.038 40.741 13.79 0.00 0.00 2.71
2238 2309 7.038017 ACCTGATATATCTTCCCAGTGGTAATG 60.038 40.741 13.79 0.00 0.00 1.90
2239 2310 7.025620 ACCTGATATATCTTCCCAGTGGTAAT 58.974 38.462 13.79 0.00 0.00 1.89
2240 2311 6.270000 CACCTGATATATCTTCCCAGTGGTAA 59.730 42.308 13.79 0.00 0.00 2.85
2241 2312 5.780282 CACCTGATATATCTTCCCAGTGGTA 59.220 44.000 13.79 0.00 0.00 3.25
2242 2313 4.594920 CACCTGATATATCTTCCCAGTGGT 59.405 45.833 13.79 6.41 0.00 4.16
2243 2314 4.840680 TCACCTGATATATCTTCCCAGTGG 59.159 45.833 13.79 0.63 0.00 4.00
2244 2315 5.568423 GCTCACCTGATATATCTTCCCAGTG 60.568 48.000 13.79 11.01 0.00 3.66
2245 2316 4.530161 GCTCACCTGATATATCTTCCCAGT 59.470 45.833 13.79 0.39 0.00 4.00
2246 2317 4.529769 TGCTCACCTGATATATCTTCCCAG 59.470 45.833 13.79 3.22 0.00 4.45
2247 2318 4.284490 GTGCTCACCTGATATATCTTCCCA 59.716 45.833 13.79 0.42 0.00 4.37
2248 2319 4.530161 AGTGCTCACCTGATATATCTTCCC 59.470 45.833 13.79 0.00 0.00 3.97
2249 2320 5.337169 GGAGTGCTCACCTGATATATCTTCC 60.337 48.000 13.79 2.79 0.00 3.46
2250 2321 5.337169 GGGAGTGCTCACCTGATATATCTTC 60.337 48.000 13.79 0.00 0.00 2.87
2251 2322 4.530161 GGGAGTGCTCACCTGATATATCTT 59.470 45.833 13.79 0.00 0.00 2.40
2252 2323 4.093011 GGGAGTGCTCACCTGATATATCT 58.907 47.826 13.79 0.00 0.00 1.98
2253 2324 4.464069 GGGAGTGCTCACCTGATATATC 57.536 50.000 5.73 5.73 0.00 1.63
2263 2334 1.779061 TTTCCTGGGGGAGTGCTCAC 61.779 60.000 1.41 0.00 43.29 3.51
2264 2335 1.065410 TTTTCCTGGGGGAGTGCTCA 61.065 55.000 1.41 0.00 43.29 4.26
2265 2336 0.322906 CTTTTCCTGGGGGAGTGCTC 60.323 60.000 0.00 0.00 43.29 4.26
2266 2337 1.770324 CTTTTCCTGGGGGAGTGCT 59.230 57.895 0.00 0.00 43.29 4.40
2267 2338 1.304464 CCTTTTCCTGGGGGAGTGC 60.304 63.158 0.00 0.00 43.29 4.40
2268 2339 1.304464 GCCTTTTCCTGGGGGAGTG 60.304 63.158 0.00 0.00 43.29 3.51
2269 2340 1.074296 AAGCCTTTTCCTGGGGGAGT 61.074 55.000 0.00 0.00 43.29 3.85
2270 2341 0.613012 CAAGCCTTTTCCTGGGGGAG 60.613 60.000 0.00 0.00 43.29 4.30
2271 2342 1.464722 CAAGCCTTTTCCTGGGGGA 59.535 57.895 0.00 0.00 40.36 4.81
2272 2343 2.285773 GCAAGCCTTTTCCTGGGGG 61.286 63.158 0.00 0.00 0.00 5.40
2273 2344 1.228988 AGCAAGCCTTTTCCTGGGG 60.229 57.895 0.00 0.00 0.00 4.96
2274 2345 0.540365 TCAGCAAGCCTTTTCCTGGG 60.540 55.000 0.00 0.00 0.00 4.45
2275 2346 1.553706 ATCAGCAAGCCTTTTCCTGG 58.446 50.000 0.00 0.00 0.00 4.45
2276 2347 2.298163 ACAATCAGCAAGCCTTTTCCTG 59.702 45.455 0.00 0.00 0.00 3.86
2277 2348 2.560105 GACAATCAGCAAGCCTTTTCCT 59.440 45.455 0.00 0.00 0.00 3.36
2278 2349 2.297033 TGACAATCAGCAAGCCTTTTCC 59.703 45.455 0.00 0.00 0.00 3.13
2279 2350 3.005155 AGTGACAATCAGCAAGCCTTTTC 59.995 43.478 0.00 0.00 0.00 2.29
2280 2351 2.961062 AGTGACAATCAGCAAGCCTTTT 59.039 40.909 0.00 0.00 0.00 2.27
2281 2352 2.590821 AGTGACAATCAGCAAGCCTTT 58.409 42.857 0.00 0.00 0.00 3.11
2289 2588 6.545504 TTAGAAGTTCAAGTGACAATCAGC 57.454 37.500 5.50 0.00 0.00 4.26
2299 2598 5.239525 GCATCCACTGTTTAGAAGTTCAAGT 59.760 40.000 5.50 0.00 0.00 3.16
2992 3337 8.187913 TCTTGACTCATCTTCAATCCTATAGG 57.812 38.462 13.07 13.07 32.57 2.57
3116 3461 4.301072 AACTGCTTGACTGCCCTTTATA 57.699 40.909 0.00 0.00 0.00 0.98
3157 3502 7.415541 GCATGATGAACTGGCTAGAAAATAACA 60.416 37.037 3.17 0.00 0.00 2.41
3249 3594 0.466124 GGCACTACCAGGATGACCTC 59.534 60.000 0.00 0.00 45.94 3.85
3520 3865 4.220821 AGTGACATGTCCAAGTACGATCTT 59.779 41.667 22.85 0.00 0.00 2.40
3703 4049 0.541392 TTACCTGTGCTGATCGGCAT 59.459 50.000 30.93 17.94 44.34 4.40
3943 4289 1.816835 CGCGGATCCTATTAGTGGCTA 59.183 52.381 10.75 0.00 0.00 3.93
4106 4452 4.082787 GGAACATGCCATATATTTGGGACG 60.083 45.833 13.35 6.31 40.18 4.79
4109 4455 3.515104 GGGGAACATGCCATATATTTGGG 59.485 47.826 13.35 0.77 37.24 4.12
4277 4623 8.107095 AGGTTTAGTTGTTTGATTATAGCCTCA 58.893 33.333 0.00 0.00 0.00 3.86
4737 5084 8.370182 GCATGGGATCCATATTCAGTAAATTTT 58.630 33.333 15.23 0.00 43.15 1.82
5346 5695 5.696270 TGTGTAAATGCTTCTGTCACTACTG 59.304 40.000 0.00 0.00 0.00 2.74
5475 5824 1.109323 GGAAGCAAAGCCTGGTGTGT 61.109 55.000 0.00 0.00 35.42 3.72
5574 5923 8.730680 GTCCATATGTGGTCCATATTGAAATAC 58.269 37.037 6.41 0.00 42.87 1.89
5590 5939 7.764331 TGTTCATTCATTTCAGTCCATATGTG 58.236 34.615 1.24 0.00 0.00 3.21
5596 5945 6.127507 TGTGTTTGTTCATTCATTTCAGTCCA 60.128 34.615 0.00 0.00 0.00 4.02
5703 6052 1.407258 GTTTGCACAGGGTTACAAGCA 59.593 47.619 0.00 0.00 0.00 3.91
5903 6252 6.991531 GCTCTGGAGAAATGATAAAGACATCT 59.008 38.462 1.35 0.00 0.00 2.90
6153 6505 2.290641 GCTGCGAATTCGACCCATTATT 59.709 45.455 31.01 0.00 43.02 1.40
6615 6969 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
6616 6970 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
6617 6971 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
6618 6972 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
6619 6973 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
6620 6974 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
6621 6975 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
6622 6976 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
6626 6980 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
6627 6981 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
6628 6982 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
6629 6983 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
6630 6984 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
6631 6985 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
6632 6986 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
6633 6987 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
6634 6988 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
6635 6989 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
6636 6990 2.195567 TTGGTCACAAGGCAGCAGC 61.196 57.895 0.00 0.00 41.10 5.25
6637 6991 4.162592 TTGGTCACAAGGCAGCAG 57.837 55.556 0.00 0.00 31.73 4.24
6651 7005 0.107831 TTGAACCCGTGACCTCTTGG 59.892 55.000 0.00 0.00 39.83 3.61
6652 7006 1.202651 ACTTGAACCCGTGACCTCTTG 60.203 52.381 0.00 0.00 0.00 3.02
6653 7007 1.070289 GACTTGAACCCGTGACCTCTT 59.930 52.381 0.00 0.00 0.00 2.85
6654 7008 0.680061 GACTTGAACCCGTGACCTCT 59.320 55.000 0.00 0.00 0.00 3.69
6655 7009 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
6656 7010 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
6657 7011 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
6658 7012 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
6659 7013 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
6660 7014 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
6661 7015 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
6662 7016 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
6663 7017 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
6664 7018 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
6665 7019 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
6666 7020 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
6667 7021 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
6668 7022 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
6669 7023 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
6670 7024 1.439543 AAGAGGCTGTTTCCAGGACT 58.560 50.000 0.00 0.00 39.22 3.85
6671 7025 2.038557 TGTAAGAGGCTGTTTCCAGGAC 59.961 50.000 0.90 0.00 39.22 3.85
6672 7026 2.303022 CTGTAAGAGGCTGTTTCCAGGA 59.697 50.000 0.90 0.00 35.89 3.86
6673 7027 2.303022 TCTGTAAGAGGCTGTTTCCAGG 59.697 50.000 17.71 5.83 38.67 4.45
6674 7028 3.685139 TCTGTAAGAGGCTGTTTCCAG 57.315 47.619 0.90 9.48 38.67 3.86
6686 7040 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
6687 7041 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
6688 7042 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
6689 7043 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
6690 7044 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
6691 7045 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
6692 7046 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
6693 7047 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
6694 7048 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
6695 7049 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
6696 7050 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
6697 7051 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
6698 7052 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
6699 7053 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
6700 7054 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
6701 7055 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
6702 7056 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
6703 7057 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
6704 7058 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
6705 7059 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
6706 7060 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
6707 7061 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
6708 7062 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
6709 7063 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
6710 7064 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
6711 7065 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
6712 7066 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
6722 7076 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
6723 7077 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
6724 7078 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
6725 7079 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
6726 7080 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
6727 7081 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
6728 7082 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
6729 7083 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
6736 7090 4.735599 AGGGTCCGGGGAAGGGTC 62.736 72.222 0.00 0.00 0.00 4.46
6752 7106 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
6755 7109 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
6756 7110 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
6757 7111 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
6758 7112 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
6764 7118 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
6765 7119 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
6766 7120 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
6767 7121 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
6768 7122 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
6778 7132 1.132500 ACAGATACTAAGGGCAGCCC 58.868 55.000 24.90 24.90 45.90 5.19
6779 7133 2.966516 ACTACAGATACTAAGGGCAGCC 59.033 50.000 1.26 1.26 0.00 4.85
6780 7134 3.637229 TGACTACAGATACTAAGGGCAGC 59.363 47.826 0.00 0.00 0.00 5.25
6781 7135 5.854010 TTGACTACAGATACTAAGGGCAG 57.146 43.478 0.00 0.00 0.00 4.85
6782 7136 6.808321 AATTGACTACAGATACTAAGGGCA 57.192 37.500 0.00 0.00 0.00 5.36
6783 7137 7.385478 GCTAAATTGACTACAGATACTAAGGGC 59.615 40.741 0.00 0.00 0.00 5.19
6784 7138 8.421784 TGCTAAATTGACTACAGATACTAAGGG 58.578 37.037 0.00 0.00 0.00 3.95
6785 7139 9.817809 TTGCTAAATTGACTACAGATACTAAGG 57.182 33.333 0.00 0.00 0.00 2.69
6847 7201 7.305813 TGATACCACAGTAAGGTAGTCAAAA 57.694 36.000 0.00 0.00 44.29 2.44
7277 7635 4.587584 TGTACATAACAACACGACCTGA 57.412 40.909 0.00 0.00 34.29 3.86
7281 7639 3.682858 AGGCATGTACATAACAACACGAC 59.317 43.478 8.32 0.00 42.70 4.34
7599 7957 7.095439 GGTCAATGAGAAACACTAAGAGTTCAG 60.095 40.741 0.00 0.00 0.00 3.02
7888 8246 3.192422 CACAACCAACAAACTGAAGTCCA 59.808 43.478 0.00 0.00 0.00 4.02
7924 8282 0.554305 TGCTCGGTACCTCCATCCTA 59.446 55.000 10.90 0.00 35.57 2.94
8255 8615 4.515191 AGACATTTGTAAGTGTTCGCATGT 59.485 37.500 0.00 0.00 0.00 3.21
8322 8682 4.161565 AGTTTGAGAACACAGTACCTGACA 59.838 41.667 0.00 0.00 38.26 3.58
8355 8715 3.508793 AGGTATCTCAGGAAAACGTTCGA 59.491 43.478 0.00 0.00 34.28 3.71
8901 9265 1.150536 GGGTGTGCTCCAACTTGGA 59.849 57.895 10.23 10.23 45.98 3.53
9058 9436 7.437862 GTGTAACATCATGGTTTTGTGTCATTT 59.562 33.333 0.00 0.00 36.32 2.32
9155 9541 3.823330 CGAACCGGAGCCTAGCGT 61.823 66.667 9.46 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.