AutoCloner

Multiple sequence alignment - TraesCS5B01G094700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G094700	chr5B	100.000	2432	0	0	1	2432	124635503	124633072	0.000000e+00	4492.0
1	TraesCS5B01G094700	chr5B	95.163	889	28	7	755	1640	124592462	124591586	0.000000e+00	1389.0
2	TraesCS5B01G094700	chr5B	96.629	623	14	5	755	1373	124644625	124644006	0.000000e+00	1027.0
3	TraesCS5B01G094700	chr5D	91.135	925	40	15	755	1669	113747459	113746567	0.000000e+00	1216.0
4	TraesCS5B01G094700	chr5A	91.019	824	44	10	854	1672	118866151	118865353	0.000000e+00	1085.0
5	TraesCS5B01G094700	chr5A	82.660	767	90	28	1	757	523286273	523287006	7.330000e-180	640.0
6	TraesCS5B01G094700	chr5A	89.011	91	5	5	755	844	118866278	118866192	9.190000e-20	108.0
7	TraesCS5B01G094700	chr5A	83.654	104	15	1	1704	1807	468571068	468571169	1.990000e-16	97.1
8	TraesCS5B01G094700	chr5A	89.655	58	5	1	1922	1979	478799524	478799580	3.350000e-09	73.1
9	TraesCS5B01G094700	chr5A	97.059	34	1	0	2258	2291	505349585	505349618	9.390000e-05	58.4
10	TraesCS5B01G094700	chr7B	84.774	775	69	24	1	755	665150734	665149989	0.000000e+00	732.0
11	TraesCS5B01G094700	chr7B	93.478	46	3	0	2101	2146	144740768	144740813	4.340000e-08	69.4
12	TraesCS5B01G094700	chr7A	83.485	660	67	25	114	755	507714752	507714117	5.830000e-161	577.0
13	TraesCS5B01G094700	chr7A	86.458	96	11	2	1703	1798	80533524	80533431	1.190000e-18	104.0
14	TraesCS5B01G094700	chr6D	87.462	327	36	3	2111	2432	435932798	435933124	2.950000e-99	372.0
15	TraesCS5B01G094700	chr6D	90.610	213	19	1	543	755	12222771	12222982	5.120000e-72	281.0
16	TraesCS5B01G094700	chr1A	87.195	328	38	3	2109	2432	312608129	312608456	1.060000e-98	370.0
17	TraesCS5B01G094700	chr1A	85.455	330	39	8	2111	2432	496646292	496646620	3.870000e-88	335.0
18	TraesCS5B01G094700	chr3A	87.917	240	27	2	2195	2432	710084958	710085197	5.120000e-72	281.0
19	TraesCS5B01G094700	chr3A	83.962	106	15	2	1701	1806	725111598	725111495	1.540000e-17	100.0
20	TraesCS5B01G094700	chr3A	95.745	47	2	0	501	547	23147736	23147782	2.590000e-10	76.8
21	TraesCS5B01G094700	chr6B	88.462	208	20	2	541	748	154848817	154849020	5.190000e-62	248.0
22	TraesCS5B01G094700	chr6B	90.728	151	11	3	599	748	154911420	154911568	5.300000e-47	198.0
23	TraesCS5B01G094700	chr4D	90.361	166	15	1	2268	2432	85863000	85862835	1.460000e-52	217.0
24	TraesCS5B01G094700	chr4D	81.915	94	16	1	1705	1798	12095626	12095534	7.210000e-11	78.7
25	TraesCS5B01G094700	chr2A	86.275	102	12	1	1705	1806	2664118	2664019	2.560000e-20	110.0
26	TraesCS5B01G094700	chr7D	83.654	104	14	2	1704	1806	255798240	255798139	7.160000e-16	95.3
27	TraesCS5B01G094700	chr7D	93.750	48	3	0	2060	2107	97941145	97941192	3.350000e-09	73.1
28	TraesCS5B01G094700	chr2D	86.486	74	7	2	1733	1806	221038534	221038464	7.210000e-11	78.7
29	TraesCS5B01G094700	chr2B	79.412	102	19	1	1705	1806	479582312	479582213	1.210000e-08	71.3
30	TraesCS5B01G094700	chr4A	79.208	101	18	3	1699	1799	599885311	599885214	1.560000e-07	67.6
31	TraesCS5B01G094700	chrUn	97.059	34	1	0	2258	2291	50312881	50312914	9.390000e-05	58.4
32	TraesCS5B01G094700	chrUn	97.059	34	1	0	2258	2291	95117875	95117842	9.390000e-05	58.4
33	TraesCS5B01G094700	chr4B	97.059	34	1	0	2258	2291	363639621	363639654	9.390000e-05	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G094700	chr5B	124633072	124635503	2431	True	4492.0	4492	100.000	1	2432	1	chr5B.!!$R2	2431
1	TraesCS5B01G094700	chr5B	124591586	124592462	876	True	1389.0	1389	95.163	755	1640	1	chr5B.!!$R1	885
2	TraesCS5B01G094700	chr5B	124644006	124644625	619	True	1027.0	1027	96.629	755	1373	1	chr5B.!!$R3	618
3	TraesCS5B01G094700	chr5D	113746567	113747459	892	True	1216.0	1216	91.135	755	1669	1	chr5D.!!$R1	914
4	TraesCS5B01G094700	chr5A	523286273	523287006	733	False	640.0	640	82.660	1	757	1	chr5A.!!$F4	756
5	TraesCS5B01G094700	chr5A	118865353	118866278	925	True	596.5	1085	90.015	755	1672	2	chr5A.!!$R1	917
6	TraesCS5B01G094700	chr7B	665149989	665150734	745	True	732.0	732	84.774	1	755	1	chr7B.!!$R1	754
7	TraesCS5B01G094700	chr7A	507714117	507714752	635	True	577.0	577	83.485	114	755	1	chr7A.!!$R2	641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
375	390	0.169009	GTTCTTCATTCTGCCGGCAC	59.831	55.0	29.03	7.98	0.0	5.01	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2233	2299	0.106894	GGGATTGAGGCCGACTAAGG	59.893	60.0	0.0	0.0	0.0	2.69	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
24	25	4.810790	TCGTCTTTTTCTCCTGATGTCTC	58.189	43.478	0.00	0.00	0.00	3.36
55	56	3.141398	TGCGAATATTGCCTGATTCCTC	58.859	45.455	0.00	0.00	0.00	3.71
72	73	3.079578	TCCTCGTTACTACAGGTGACAG	58.920	50.000	0.00	0.00	34.59	3.51
75	76	3.748083	TCGTTACTACAGGTGACAGACT	58.252	45.455	0.00	0.00	34.59	3.24
83	84	4.755266	ACAGGTGACAGACTAAACAAGT	57.245	40.909	0.00	0.00	42.80	3.16
104	105	4.022589	AGTGTCAATCCATTGCACTTTCTG	60.023	41.667	16.87	0.00	44.62	3.02
125	126	7.510549	TCTGTTTCTTACCTTCCTTGATTTG	57.489	36.000	0.00	0.00	0.00	2.32
148	152	3.006752	TGATGGTGGCCAATTTCAAGTTC	59.993	43.478	7.24	0.00	36.95	3.01
151	155	4.219115	TGGTGGCCAATTTCAAGTTCTTA	58.781	39.130	7.24	0.00	0.00	2.10
268	274	1.682854	CACATGTTTGTGTCCTTGCCT	59.317	47.619	0.00	0.00	46.68	4.75
282	288	3.510846	GCCTTGAGCAGCCTGATG	58.489	61.111	0.00	0.00	42.97	3.07
287	302	1.830587	TTGAGCAGCCTGATGACCGT	61.831	55.000	0.00	0.00	0.00	4.83
296	311	2.509336	GATGACCGTGGGAGCGTG	60.509	66.667	0.00	0.00	0.00	5.34
345	360	4.752879	TTGCGGTAGGTGCGAGCC	62.753	66.667	0.00	0.00	34.24	4.70
367	382	2.100631	CCGCGCCGTTCTTCATTCT	61.101	57.895	0.00	0.00	0.00	2.40
368	383	1.059369	CGCGCCGTTCTTCATTCTG	59.941	57.895	0.00	0.00	0.00	3.02
369	384	1.226128	GCGCCGTTCTTCATTCTGC	60.226	57.895	0.00	0.00	0.00	4.26
371	386	1.425428	GCCGTTCTTCATTCTGCCG	59.575	57.895	0.00	0.00	0.00	5.69
372	387	1.982073	GCCGTTCTTCATTCTGCCGG	61.982	60.000	0.00	0.00	37.08	6.13
373	388	1.425428	CGTTCTTCATTCTGCCGGC	59.575	57.895	22.73	22.73	0.00	6.13
374	389	1.298157	CGTTCTTCATTCTGCCGGCA	61.298	55.000	30.59	30.59	0.00	5.69
375	390	0.169009	GTTCTTCATTCTGCCGGCAC	59.831	55.000	29.03	7.98	0.00	5.01
376	391	0.960364	TTCTTCATTCTGCCGGCACC	60.960	55.000	29.03	0.00	0.00	5.01
377	392	2.745884	TTCATTCTGCCGGCACCG	60.746	61.111	29.03	18.23	39.44	4.94
435	450	2.743928	GAAGGACGCCACTGCTGG	60.744	66.667	0.00	0.00	41.13	4.85
487	505	1.059692	CTGTGATTCTTGCGCGTGTAG	59.940	52.381	8.43	2.71	0.00	2.74
547	565	1.759445	AGAGCGCTGATAACCTGTGAT	59.241	47.619	18.48	0.00	0.00	3.06
551	569	2.874701	GCGCTGATAACCTGTGATGAAT	59.125	45.455	0.00	0.00	0.00	2.57
555	573	5.065090	CGCTGATAACCTGTGATGAATCAAA	59.935	40.000	0.00	0.00	38.75	2.69
556	574	6.403527	CGCTGATAACCTGTGATGAATCAAAA	60.404	38.462	0.00	0.00	38.75	2.44
558	576	7.362401	GCTGATAACCTGTGATGAATCAAAAGT	60.362	37.037	0.00	0.00	38.75	2.66
559	577	9.166173	CTGATAACCTGTGATGAATCAAAAGTA	57.834	33.333	0.00	0.00	38.75	2.24
564	582	7.820648	ACCTGTGATGAATCAAAAGTAATGAC	58.179	34.615	0.00	0.00	38.75	3.06
565	583	7.448161	ACCTGTGATGAATCAAAAGTAATGACA	59.552	33.333	0.00	0.00	38.75	3.58
566	584	8.298854	CCTGTGATGAATCAAAAGTAATGACAA	58.701	33.333	0.00	0.00	38.75	3.18
567	585	9.681692	CTGTGATGAATCAAAAGTAATGACAAA	57.318	29.630	0.00	0.00	38.75	2.83
577	595	9.047371	TCAAAAGTAATGACAAATGAACTCGTA	57.953	29.630	0.00	0.00	0.00	3.43
597	615	8.307483	ACTCGTATCTTTATTACTGGGATGATG	58.693	37.037	0.00	0.00	0.00	3.07
598	616	8.190326	TCGTATCTTTATTACTGGGATGATGT	57.810	34.615	0.00	0.00	0.00	3.06
620	640	7.661536	TGTACATATATATCCTCTGAAGGGC	57.338	40.000	0.00	0.00	43.56	5.19
621	641	5.860941	ACATATATATCCTCTGAAGGGCG	57.139	43.478	0.00	0.00	43.56	6.13
622	642	4.651503	ACATATATATCCTCTGAAGGGCGG	59.348	45.833	0.00	0.00	43.56	6.13
623	643	1.267121	TATATCCTCTGAAGGGCGGC	58.733	55.000	0.00	0.00	43.56	6.53
624	644	0.764369	ATATCCTCTGAAGGGCGGCA	60.764	55.000	12.47	0.00	43.56	5.69
631	651	3.140814	GAAGGGCGGCATCCAACC	61.141	66.667	12.47	0.00	0.00	3.77
651	671	1.006571	GTGCAACGGTTCGGAGAGA	60.007	57.895	0.00	0.00	38.43	3.10
653	673	1.006571	GCAACGGTTCGGAGAGACA	60.007	57.895	0.00	0.00	38.43	3.41
658	678	1.513622	GGTTCGGAGAGACAGGAGC	59.486	63.158	0.00	0.00	38.43	4.70
663	683	1.813192	GGAGAGACAGGAGCGAAGG	59.187	63.158	0.00	0.00	0.00	3.46
668	688	2.600769	ACAGGAGCGAAGGGACGT	60.601	61.111	0.00	0.00	35.59	4.34
670	690	2.282958	AGGAGCGAAGGGACGTGA	60.283	61.111	0.00	0.00	35.59	4.35
671	691	1.682684	AGGAGCGAAGGGACGTGAT	60.683	57.895	0.00	0.00	35.59	3.06
678	698	1.653151	GAAGGGACGTGATGGTTAGC	58.347	55.000	0.00	0.00	0.00	3.09
679	699	0.981183	AAGGGACGTGATGGTTAGCA	59.019	50.000	0.00	0.00	0.00	3.49
680	700	0.537188	AGGGACGTGATGGTTAGCAG	59.463	55.000	0.00	0.00	0.00	4.24
681	701	0.535335	GGGACGTGATGGTTAGCAGA	59.465	55.000	0.00	0.00	0.00	4.26
682	702	1.139058	GGGACGTGATGGTTAGCAGAT	59.861	52.381	0.00	0.00	0.00	2.90
683	703	2.364324	GGGACGTGATGGTTAGCAGATA	59.636	50.000	0.00	0.00	0.00	1.98
684	704	3.181469	GGGACGTGATGGTTAGCAGATAA	60.181	47.826	0.00	0.00	0.00	1.75
685	705	3.802685	GGACGTGATGGTTAGCAGATAAC	59.197	47.826	0.00	0.00	42.68	1.89
686	706	4.441634	GGACGTGATGGTTAGCAGATAACT	60.442	45.833	8.45	0.00	42.93	2.24
687	707	5.221185	GGACGTGATGGTTAGCAGATAACTA	60.221	44.000	8.45	2.73	42.93	2.24
688	708	6.216801	ACGTGATGGTTAGCAGATAACTAA	57.783	37.500	8.45	0.00	42.93	2.24
689	709	6.040878	ACGTGATGGTTAGCAGATAACTAAC	58.959	40.000	8.45	2.21	45.69	2.34
694	714	4.056092	GTTAGCAGATAACTAACCGCCT	57.944	45.455	1.05	0.00	42.32	5.52
695	715	2.892784	AGCAGATAACTAACCGCCTC	57.107	50.000	0.00	0.00	0.00	4.70
696	716	1.413077	AGCAGATAACTAACCGCCTCC	59.587	52.381	0.00	0.00	0.00	4.30
697	717	1.540580	GCAGATAACTAACCGCCTCCC	60.541	57.143	0.00	0.00	0.00	4.30
698	718	2.040178	CAGATAACTAACCGCCTCCCT	58.960	52.381	0.00	0.00	0.00	4.20
699	719	3.228453	CAGATAACTAACCGCCTCCCTA	58.772	50.000	0.00	0.00	0.00	3.53
700	720	3.640029	CAGATAACTAACCGCCTCCCTAA	59.360	47.826	0.00	0.00	0.00	2.69
701	721	4.283722	CAGATAACTAACCGCCTCCCTAAT	59.716	45.833	0.00	0.00	0.00	1.73
702	722	4.283722	AGATAACTAACCGCCTCCCTAATG	59.716	45.833	0.00	0.00	0.00	1.90
703	723	1.875488	ACTAACCGCCTCCCTAATGT	58.125	50.000	0.00	0.00	0.00	2.71
704	724	3.036452	ACTAACCGCCTCCCTAATGTA	57.964	47.619	0.00	0.00	0.00	2.29
705	725	3.377573	ACTAACCGCCTCCCTAATGTAA	58.622	45.455	0.00	0.00	0.00	2.41
706	726	2.704464	AACCGCCTCCCTAATGTAAC	57.296	50.000	0.00	0.00	0.00	2.50
707	727	0.462789	ACCGCCTCCCTAATGTAACG	59.537	55.000	0.00	0.00	0.00	3.18
708	728	0.462789	CCGCCTCCCTAATGTAACGT	59.537	55.000	0.00	0.00	0.00	3.99
709	729	1.567504	CGCCTCCCTAATGTAACGTG	58.432	55.000	0.00	0.00	0.00	4.49
710	730	1.805120	CGCCTCCCTAATGTAACGTGG	60.805	57.143	0.00	0.00	0.00	4.94
711	731	1.483415	GCCTCCCTAATGTAACGTGGA	59.517	52.381	0.00	0.00	0.00	4.02
712	732	2.483188	GCCTCCCTAATGTAACGTGGAG	60.483	54.545	7.21	7.21	39.25	3.86
713	733	3.028850	CCTCCCTAATGTAACGTGGAGA	58.971	50.000	14.11	0.00	41.51	3.71
714	734	3.641906	CCTCCCTAATGTAACGTGGAGAT	59.358	47.826	14.11	0.00	41.51	2.75
715	735	4.101119	CCTCCCTAATGTAACGTGGAGATT	59.899	45.833	14.11	7.01	41.51	2.40
716	736	5.303589	CCTCCCTAATGTAACGTGGAGATTA	59.696	44.000	14.11	7.69	41.51	1.75
717	737	6.014499	CCTCCCTAATGTAACGTGGAGATTAT	60.014	42.308	14.11	0.00	41.51	1.28
718	738	6.989659	TCCCTAATGTAACGTGGAGATTATC	58.010	40.000	0.00	0.00	0.00	1.75
831	853	2.810852	CCGGTATCTACTTACGTCTCCC	59.189	54.545	0.00	0.00	0.00	4.30
990	1047	1.519719	CAAGGAGGAAGGAGCTCGG	59.480	63.158	7.83	0.00	0.00	4.63
1059	1116	3.379445	GTCCCGGAGCCTGACGAA	61.379	66.667	0.73	0.00	0.00	3.85
1132	1189	0.608130	TATCTCCTGCGTGTTGCTGT	59.392	50.000	0.00	0.00	46.63	4.40
1245	1302	1.837538	CGCTTTTCGCCCTTCACGAA	61.838	55.000	0.00	0.00	46.91	3.85
1459	1524	2.233271	AGTGTTCTGGTTTGGCTCATG	58.767	47.619	0.00	0.00	0.00	3.07
1523	1588	2.411583	TGCATGTATCTGGATGGAGGT	58.588	47.619	0.00	0.00	0.00	3.85
1543	1608	7.153315	GGAGGTTTATACAATACTAGTCTGGC	58.847	42.308	0.00	0.00	0.00	4.85
1559	1624	2.576191	TCTGGCAGGTTAGCAATTACCT	59.424	45.455	15.73	0.00	45.54	3.08
1567	1632	6.150474	GCAGGTTAGCAATTACCTTTGAGTTA	59.850	38.462	0.00	0.00	42.01	2.24
1693	1759	5.476091	AAAAATTTGCGGGGAAGATGTAA	57.524	34.783	0.00	0.00	0.00	2.41
1694	1760	5.675684	AAAATTTGCGGGGAAGATGTAAT	57.324	34.783	0.00	0.00	0.00	1.89
1695	1761	6.783708	AAAATTTGCGGGGAAGATGTAATA	57.216	33.333	0.00	0.00	0.00	0.98
1696	1762	6.391227	AAATTTGCGGGGAAGATGTAATAG	57.609	37.500	0.00	0.00	0.00	1.73
1697	1763	4.497291	TTTGCGGGGAAGATGTAATAGT	57.503	40.909	0.00	0.00	0.00	2.12
1698	1764	4.497291	TTGCGGGGAAGATGTAATAGTT	57.503	40.909	0.00	0.00	0.00	2.24
1699	1765	4.497291	TGCGGGGAAGATGTAATAGTTT	57.503	40.909	0.00	0.00	0.00	2.66
1700	1766	5.617528	TGCGGGGAAGATGTAATAGTTTA	57.382	39.130	0.00	0.00	0.00	2.01
1701	1767	6.182507	TGCGGGGAAGATGTAATAGTTTAT	57.817	37.500	0.00	0.00	0.00	1.40
1702	1768	6.597562	TGCGGGGAAGATGTAATAGTTTATT	58.402	36.000	0.00	0.00	0.00	1.40
1703	1769	7.737869	TGCGGGGAAGATGTAATAGTTTATTA	58.262	34.615	0.00	0.00	0.00	0.98
1704	1770	7.876068	TGCGGGGAAGATGTAATAGTTTATTAG	59.124	37.037	0.00	0.00	31.72	1.73
1705	1771	8.092687	GCGGGGAAGATGTAATAGTTTATTAGA	58.907	37.037	0.00	0.00	31.72	2.10
1706	1772	9.640963	CGGGGAAGATGTAATAGTTTATTAGAG	57.359	37.037	0.00	0.00	31.72	2.43
1707	1773	9.945904	GGGGAAGATGTAATAGTTTATTAGAGG	57.054	37.037	0.00	0.00	31.72	3.69
1727	1793	7.437713	AGAGGTAATATCACTGGAAATCACA	57.562	36.000	0.00	0.00	0.00	3.58
1728	1794	8.038862	AGAGGTAATATCACTGGAAATCACAT	57.961	34.615	0.00	0.00	0.00	3.21
1729	1795	9.159254	AGAGGTAATATCACTGGAAATCACATA	57.841	33.333	0.00	0.00	0.00	2.29
1730	1796	9.778741	GAGGTAATATCACTGGAAATCACATAA	57.221	33.333	0.00	0.00	0.00	1.90
1754	1820	8.785329	AATTTGTGTTGAATGTTTAGTTTGGT	57.215	26.923	0.00	0.00	0.00	3.67
1755	1821	7.588143	TTTGTGTTGAATGTTTAGTTTGGTG	57.412	32.000	0.00	0.00	0.00	4.17
1756	1822	6.274157	TGTGTTGAATGTTTAGTTTGGTGT	57.726	33.333	0.00	0.00	0.00	4.16
1757	1823	6.692486	TGTGTTGAATGTTTAGTTTGGTGTT	58.308	32.000	0.00	0.00	0.00	3.32
1758	1824	7.827701	TGTGTTGAATGTTTAGTTTGGTGTTA	58.172	30.769	0.00	0.00	0.00	2.41
1759	1825	8.470805	TGTGTTGAATGTTTAGTTTGGTGTTAT	58.529	29.630	0.00	0.00	0.00	1.89
1760	1826	9.953697	GTGTTGAATGTTTAGTTTGGTGTTATA	57.046	29.630	0.00	0.00	0.00	0.98
1794	1860	9.620660	AAAAATACGAATTTGTGGTCATCTAAC	57.379	29.630	8.70	0.00	35.46	2.34
1795	1861	8.561738	AAATACGAATTTGTGGTCATCTAACT	57.438	30.769	8.70	0.00	33.97	2.24
1796	1862	8.561738	AATACGAATTTGTGGTCATCTAACTT	57.438	30.769	8.70	0.00	0.00	2.66
1797	1863	6.241207	ACGAATTTGTGGTCATCTAACTTG	57.759	37.500	0.00	0.00	0.00	3.16
1798	1864	5.995282	ACGAATTTGTGGTCATCTAACTTGA	59.005	36.000	0.00	0.00	0.00	3.02
1799	1865	6.073222	ACGAATTTGTGGTCATCTAACTTGAC	60.073	38.462	0.00	0.00	42.20	3.18
1800	1866	6.147821	CGAATTTGTGGTCATCTAACTTGACT	59.852	38.462	4.07	0.00	42.48	3.41
1801	1867	7.440523	AATTTGTGGTCATCTAACTTGACTC	57.559	36.000	4.07	0.05	42.48	3.36
1802	1868	5.545063	TTGTGGTCATCTAACTTGACTCA	57.455	39.130	4.07	2.25	42.48	3.41
1803	1869	5.545063	TGTGGTCATCTAACTTGACTCAA	57.455	39.130	4.07	0.00	42.48	3.02
1804	1870	5.541845	TGTGGTCATCTAACTTGACTCAAG	58.458	41.667	16.01	16.01	45.85	3.02
1805	1871	4.390297	GTGGTCATCTAACTTGACTCAAGC	59.610	45.833	17.29	0.46	44.43	4.01
1806	1872	4.040339	TGGTCATCTAACTTGACTCAAGCA	59.960	41.667	17.29	6.19	44.43	3.91
1807	1873	4.997395	GGTCATCTAACTTGACTCAAGCAA	59.003	41.667	17.29	6.18	44.43	3.91
1808	1874	5.121454	GGTCATCTAACTTGACTCAAGCAAG	59.879	44.000	17.29	14.31	44.43	4.01
1890	1956	7.951287	TCAAATATTGTGATGATTTTTGCACG	58.049	30.769	0.00	0.00	34.12	5.34
1891	1957	7.811713	TCAAATATTGTGATGATTTTTGCACGA	59.188	29.630	0.00	0.00	34.12	4.35
1892	1958	8.433893	CAAATATTGTGATGATTTTTGCACGAA	58.566	29.630	0.00	0.00	34.12	3.85
1893	1959	5.827568	ATTGTGATGATTTTTGCACGAAC	57.172	34.783	0.00	0.00	34.12	3.95
1894	1960	4.298744	TGTGATGATTTTTGCACGAACA	57.701	36.364	0.00	0.00	34.12	3.18
1895	1961	4.869215	TGTGATGATTTTTGCACGAACAT	58.131	34.783	0.00	0.00	34.12	2.71
1896	1962	4.916831	TGTGATGATTTTTGCACGAACATC	59.083	37.500	0.00	0.00	34.12	3.06
1897	1963	5.156355	GTGATGATTTTTGCACGAACATCT	58.844	37.500	15.72	0.00	35.30	2.90
1898	1964	5.630680	GTGATGATTTTTGCACGAACATCTT	59.369	36.000	15.72	4.43	35.30	2.40
1899	1965	5.858049	TGATGATTTTTGCACGAACATCTTC	59.142	36.000	15.72	11.17	35.30	2.87
1900	1966	5.180367	TGATTTTTGCACGAACATCTTCA	57.820	34.783	0.00	0.00	0.00	3.02
1901	1967	4.975502	TGATTTTTGCACGAACATCTTCAC	59.024	37.500	0.00	0.00	0.00	3.18
1902	1968	4.362932	TTTTTGCACGAACATCTTCACA	57.637	36.364	0.00	0.00	0.00	3.58
1903	1969	4.566545	TTTTGCACGAACATCTTCACAT	57.433	36.364	0.00	0.00	0.00	3.21
1904	1970	4.566545	TTTGCACGAACATCTTCACATT	57.433	36.364	0.00	0.00	0.00	2.71
1905	1971	4.566545	TTGCACGAACATCTTCACATTT	57.433	36.364	0.00	0.00	0.00	2.32
1906	1972	4.566545	TGCACGAACATCTTCACATTTT	57.433	36.364	0.00	0.00	0.00	1.82
1907	1973	4.930963	TGCACGAACATCTTCACATTTTT	58.069	34.783	0.00	0.00	0.00	1.94
1908	1974	6.066054	TGCACGAACATCTTCACATTTTTA	57.934	33.333	0.00	0.00	0.00	1.52
1909	1975	6.499172	TGCACGAACATCTTCACATTTTTAA	58.501	32.000	0.00	0.00	0.00	1.52
1910	1976	7.144661	TGCACGAACATCTTCACATTTTTAAT	58.855	30.769	0.00	0.00	0.00	1.40
1911	1977	7.651304	TGCACGAACATCTTCACATTTTTAATT	59.349	29.630	0.00	0.00	0.00	1.40
1912	1978	8.487176	GCACGAACATCTTCACATTTTTAATTT	58.513	29.630	0.00	0.00	0.00	1.82
1913	1979	9.782028	CACGAACATCTTCACATTTTTAATTTG	57.218	29.630	0.00	0.00	0.00	2.32
1914	1980	9.528018	ACGAACATCTTCACATTTTTAATTTGT	57.472	25.926	0.00	0.00	0.00	2.83
1915	1981	9.782028	CGAACATCTTCACATTTTTAATTTGTG	57.218	29.630	1.50	1.50	41.60	3.33
1917	1983	9.829507	AACATCTTCACATTTTTAATTTGTGGA	57.170	25.926	7.23	0.00	40.82	4.02
1918	1984	9.829507	ACATCTTCACATTTTTAATTTGTGGAA	57.170	25.926	7.23	1.63	40.82	3.53
1921	1987	8.772705	TCTTCACATTTTTAATTTGTGGAATGC	58.227	29.630	7.23	0.00	40.82	3.56
1922	1988	8.674263	TTCACATTTTTAATTTGTGGAATGCT	57.326	26.923	7.23	0.00	40.82	3.79
1923	1989	8.309163	TCACATTTTTAATTTGTGGAATGCTC	57.691	30.769	7.23	0.00	40.82	4.26
1924	1990	7.930325	TCACATTTTTAATTTGTGGAATGCTCA	59.070	29.630	7.23	0.00	40.82	4.26
1925	1991	8.723311	CACATTTTTAATTTGTGGAATGCTCAT	58.277	29.630	0.13	0.00	37.64	2.90
1926	1992	9.941325	ACATTTTTAATTTGTGGAATGCTCATA	57.059	25.926	0.00	0.00	0.00	2.15
1946	2012	8.969121	CTCATAAATGAGCAAACATAACACAA	57.031	30.769	7.02	0.00	46.63	3.33
1947	2013	9.409312	CTCATAAATGAGCAAACATAACACAAA	57.591	29.630	7.02	0.00	46.63	2.83
1948	2014	9.755804	TCATAAATGAGCAAACATAACACAAAA	57.244	25.926	0.00	0.00	32.11	2.44
1979	2045	2.126031	GGTCTCGAACCTGCGACC	60.126	66.667	3.79	3.79	45.45	4.79
1980	2046	2.649034	GTCTCGAACCTGCGACCA	59.351	61.111	0.00	0.00	36.17	4.02
1981	2047	1.006571	GTCTCGAACCTGCGACCAA	60.007	57.895	0.00	0.00	36.17	3.67
1982	2048	1.009389	GTCTCGAACCTGCGACCAAG	61.009	60.000	0.00	0.00	36.17	3.61
1983	2049	1.176619	TCTCGAACCTGCGACCAAGA	61.177	55.000	0.00	0.00	36.17	3.02
1984	2050	0.319555	CTCGAACCTGCGACCAAGAA	60.320	55.000	0.00	0.00	36.17	2.52
1985	2051	0.320374	TCGAACCTGCGACCAAGAAT	59.680	50.000	0.00	0.00	35.01	2.40
1986	2052	1.156736	CGAACCTGCGACCAAGAATT	58.843	50.000	0.00	0.00	0.00	2.17
1987	2053	2.028839	TCGAACCTGCGACCAAGAATTA	60.029	45.455	0.00	0.00	35.01	1.40
1988	2054	2.739913	CGAACCTGCGACCAAGAATTAA	59.260	45.455	0.00	0.00	0.00	1.40
1989	2055	3.424433	CGAACCTGCGACCAAGAATTAAC	60.424	47.826	0.00	0.00	0.00	2.01
1990	2056	3.134574	ACCTGCGACCAAGAATTAACA	57.865	42.857	0.00	0.00	0.00	2.41
1991	2057	3.482436	ACCTGCGACCAAGAATTAACAA	58.518	40.909	0.00	0.00	0.00	2.83
1992	2058	3.886505	ACCTGCGACCAAGAATTAACAAA	59.113	39.130	0.00	0.00	0.00	2.83
1993	2059	4.226761	CCTGCGACCAAGAATTAACAAAC	58.773	43.478	0.00	0.00	0.00	2.93
1994	2060	3.879427	TGCGACCAAGAATTAACAAACG	58.121	40.909	0.00	0.00	0.00	3.60
1995	2061	3.560481	TGCGACCAAGAATTAACAAACGA	59.440	39.130	0.00	0.00	0.00	3.85
1996	2062	4.148891	GCGACCAAGAATTAACAAACGAG	58.851	43.478	0.00	0.00	0.00	4.18
1997	2063	4.148891	CGACCAAGAATTAACAAACGAGC	58.851	43.478	0.00	0.00	0.00	5.03
1998	2064	4.473199	GACCAAGAATTAACAAACGAGCC	58.527	43.478	0.00	0.00	0.00	4.70
1999	2065	3.254903	ACCAAGAATTAACAAACGAGCCC	59.745	43.478	0.00	0.00	0.00	5.19
2000	2066	3.506067	CCAAGAATTAACAAACGAGCCCT	59.494	43.478	0.00	0.00	0.00	5.19
2001	2067	4.475944	CAAGAATTAACAAACGAGCCCTG	58.524	43.478	0.00	0.00	0.00	4.45
2002	2068	2.488153	AGAATTAACAAACGAGCCCTGC	59.512	45.455	0.00	0.00	0.00	4.85
2003	2069	2.200373	ATTAACAAACGAGCCCTGCT	57.800	45.000	0.00	0.00	43.88	4.24
2004	2070	1.975660	TTAACAAACGAGCCCTGCTT	58.024	45.000	0.00	0.00	39.88	3.91
2005	2071	1.975660	TAACAAACGAGCCCTGCTTT	58.024	45.000	0.00	0.00	39.88	3.51
2006	2072	0.668535	AACAAACGAGCCCTGCTTTC	59.331	50.000	0.00	0.00	39.88	2.62
2007	2073	0.465460	ACAAACGAGCCCTGCTTTCA	60.465	50.000	0.00	0.00	39.88	2.69
2008	2074	0.667993	CAAACGAGCCCTGCTTTCAA	59.332	50.000	0.00	0.00	39.88	2.69
2009	2075	1.066908	CAAACGAGCCCTGCTTTCAAA	59.933	47.619	0.00	0.00	39.88	2.69
2010	2076	1.398692	AACGAGCCCTGCTTTCAAAA	58.601	45.000	0.00	0.00	39.88	2.44
2011	2077	1.398692	ACGAGCCCTGCTTTCAAAAA	58.601	45.000	0.00	0.00	39.88	1.94
2042	2108	3.343941	AAAACGAGCCCTGCTATAACA	57.656	42.857	0.00	0.00	39.88	2.41
2043	2109	3.343941	AAACGAGCCCTGCTATAACAA	57.656	42.857	0.00	0.00	39.88	2.83
2044	2110	2.311124	ACGAGCCCTGCTATAACAAC	57.689	50.000	0.00	0.00	39.88	3.32
2045	2111	1.831736	ACGAGCCCTGCTATAACAACT	59.168	47.619	0.00	0.00	39.88	3.16
2046	2112	3.028850	ACGAGCCCTGCTATAACAACTA	58.971	45.455	0.00	0.00	39.88	2.24
2047	2113	3.181478	ACGAGCCCTGCTATAACAACTAC	60.181	47.826	0.00	0.00	39.88	2.73
2048	2114	3.181479	CGAGCCCTGCTATAACAACTACA	60.181	47.826	0.00	0.00	39.88	2.74
2049	2115	4.679639	CGAGCCCTGCTATAACAACTACAA	60.680	45.833	0.00	0.00	39.88	2.41
2050	2116	4.514401	AGCCCTGCTATAACAACTACAAC	58.486	43.478	0.00	0.00	36.99	3.32
2051	2117	4.019681	AGCCCTGCTATAACAACTACAACA	60.020	41.667	0.00	0.00	36.99	3.33
2052	2118	4.332819	GCCCTGCTATAACAACTACAACAG	59.667	45.833	0.00	0.00	0.00	3.16
2053	2119	4.332819	CCCTGCTATAACAACTACAACAGC	59.667	45.833	0.00	0.00	0.00	4.40
2054	2120	4.332819	CCTGCTATAACAACTACAACAGCC	59.667	45.833	0.00	0.00	0.00	4.85
2055	2121	5.160607	TGCTATAACAACTACAACAGCCT	57.839	39.130	0.00	0.00	0.00	4.58
2056	2122	5.175859	TGCTATAACAACTACAACAGCCTC	58.824	41.667	0.00	0.00	0.00	4.70
2057	2123	5.046591	TGCTATAACAACTACAACAGCCTCT	60.047	40.000	0.00	0.00	0.00	3.69
2058	2124	5.875359	GCTATAACAACTACAACAGCCTCTT	59.125	40.000	0.00	0.00	0.00	2.85
2059	2125	6.183360	GCTATAACAACTACAACAGCCTCTTG	60.183	42.308	0.00	0.00	0.00	3.02
2060	2126	2.222027	ACAACTACAACAGCCTCTTGC	58.778	47.619	0.00	0.00	41.71	4.01
2070	2136	3.165606	GCCTCTTGCTGCACATACT	57.834	52.632	0.00	0.00	36.87	2.12
2071	2137	0.731417	GCCTCTTGCTGCACATACTG	59.269	55.000	0.00	0.00	36.87	2.74
2079	2145	2.273449	GCACATACTGCAGCCCCT	59.727	61.111	15.27	0.00	46.29	4.79
2080	2146	1.379044	GCACATACTGCAGCCCCTT	60.379	57.895	15.27	0.00	46.29	3.95
2081	2147	0.967380	GCACATACTGCAGCCCCTTT	60.967	55.000	15.27	0.00	46.29	3.11
2082	2148	1.549203	CACATACTGCAGCCCCTTTT	58.451	50.000	15.27	0.00	0.00	2.27
2083	2149	1.203052	CACATACTGCAGCCCCTTTTG	59.797	52.381	15.27	1.82	0.00	2.44
2084	2150	0.174162	CATACTGCAGCCCCTTTTGC	59.826	55.000	15.27	0.00	40.67	3.68
2086	2152	1.178534	TACTGCAGCCCCTTTTGCAC	61.179	55.000	15.27	0.00	44.72	4.57
2087	2153	3.562779	CTGCAGCCCCTTTTGCACG	62.563	63.158	0.00	0.00	44.72	5.34
2089	2155	4.705519	CAGCCCCTTTTGCACGCG	62.706	66.667	3.53	3.53	0.00	6.01
2092	2158	3.053291	CCCCTTTTGCACGCGCTA	61.053	61.111	5.73	0.00	39.64	4.26
2093	2159	2.406616	CCCCTTTTGCACGCGCTAT	61.407	57.895	5.73	0.00	39.64	2.97
2094	2160	1.506262	CCCTTTTGCACGCGCTATT	59.494	52.632	5.73	0.00	39.64	1.73
2095	2161	0.109319	CCCTTTTGCACGCGCTATTT	60.109	50.000	5.73	0.00	39.64	1.40
2096	2162	1.668628	CCCTTTTGCACGCGCTATTTT	60.669	47.619	5.73	0.00	39.64	1.82
2097	2163	1.648681	CCTTTTGCACGCGCTATTTTC	59.351	47.619	5.73	0.00	39.64	2.29
2098	2164	2.584791	CTTTTGCACGCGCTATTTTCT	58.415	42.857	5.73	0.00	39.64	2.52
2099	2165	2.697431	TTTGCACGCGCTATTTTCTT	57.303	40.000	5.73	0.00	39.64	2.52
2100	2166	2.697431	TTGCACGCGCTATTTTCTTT	57.303	40.000	5.73	0.00	39.64	2.52
2101	2167	3.815337	TTGCACGCGCTATTTTCTTTA	57.185	38.095	5.73	0.00	39.64	1.85
2102	2168	3.815337	TGCACGCGCTATTTTCTTTAA	57.185	38.095	5.73	0.00	39.64	1.52
2103	2169	3.742786	TGCACGCGCTATTTTCTTTAAG	58.257	40.909	5.73	0.00	39.64	1.85
2104	2170	3.433957	TGCACGCGCTATTTTCTTTAAGA	59.566	39.130	5.73	0.00	39.64	2.10
2105	2171	4.094294	TGCACGCGCTATTTTCTTTAAGAT	59.906	37.500	5.73	0.00	39.64	2.40
2106	2172	5.292345	TGCACGCGCTATTTTCTTTAAGATA	59.708	36.000	5.73	0.00	39.64	1.98
2107	2173	6.183360	TGCACGCGCTATTTTCTTTAAGATAA	60.183	34.615	5.73	0.00	39.64	1.75
2108	2174	6.354622	GCACGCGCTATTTTCTTTAAGATAAG	59.645	38.462	5.73	0.00	34.30	1.73
2109	2175	6.846283	CACGCGCTATTTTCTTTAAGATAAGG	59.154	38.462	5.73	0.00	0.00	2.69
2110	2176	6.759827	ACGCGCTATTTTCTTTAAGATAAGGA	59.240	34.615	5.73	0.00	0.00	3.36
2111	2177	7.279313	ACGCGCTATTTTCTTTAAGATAAGGAA	59.721	33.333	5.73	0.00	0.00	3.36
2112	2178	8.120465	CGCGCTATTTTCTTTAAGATAAGGAAA	58.880	33.333	5.56	4.02	37.11	3.13
2113	2179	9.783256	GCGCTATTTTCTTTAAGATAAGGAAAA	57.217	29.630	17.04	17.04	36.48	2.29
2120	2186	9.738832	TTTCTTTAAGATAAGGAAAACGTTTGG	57.261	29.630	15.46	0.00	0.00	3.28
2121	2187	7.364970	TCTTTAAGATAAGGAAAACGTTTGGC	58.635	34.615	15.46	9.82	0.00	4.52
2122	2188	6.636562	TTAAGATAAGGAAAACGTTTGGCA	57.363	33.333	15.46	0.00	0.00	4.92
2123	2189	5.722021	AAGATAAGGAAAACGTTTGGCAT	57.278	34.783	15.46	4.88	0.00	4.40
2124	2190	5.310720	AGATAAGGAAAACGTTTGGCATC	57.689	39.130	15.46	8.09	0.00	3.91
2125	2191	5.010282	AGATAAGGAAAACGTTTGGCATCT	58.990	37.500	15.46	14.27	0.00	2.90
2126	2192	6.177610	AGATAAGGAAAACGTTTGGCATCTA	58.822	36.000	15.46	2.64	0.00	1.98
2127	2193	4.499037	AAGGAAAACGTTTGGCATCTAC	57.501	40.909	15.46	0.00	0.00	2.59
2128	2194	3.482436	AGGAAAACGTTTGGCATCTACA	58.518	40.909	15.46	0.00	0.00	2.74
2129	2195	3.252458	AGGAAAACGTTTGGCATCTACAC	59.748	43.478	15.46	0.00	0.00	2.90
2130	2196	2.961522	AAACGTTTGGCATCTACACG	57.038	45.000	13.81	0.00	36.91	4.49
2131	2197	0.515564	AACGTTTGGCATCTACACGC	59.484	50.000	0.00	0.00	34.14	5.34
2138	2204	4.201679	CATCTACACGCCGGCCGA	62.202	66.667	30.73	10.14	41.02	5.54
2139	2205	3.454573	ATCTACACGCCGGCCGAA	61.455	61.111	30.73	2.69	41.02	4.30
2140	2206	3.711541	ATCTACACGCCGGCCGAAC	62.712	63.158	30.73	17.92	41.02	3.95
2148	2214	4.084888	CCGGCCGAACGCTTCAAC	62.085	66.667	30.73	0.00	37.74	3.18
2149	2215	4.084888	CGGCCGAACGCTTCAACC	62.085	66.667	24.07	0.00	37.74	3.77
2150	2216	4.084888	GGCCGAACGCTTCAACCG	62.085	66.667	0.00	0.00	37.74	4.44
2151	2217	4.736631	GCCGAACGCTTCAACCGC	62.737	66.667	0.00	0.00	0.00	5.68
2152	2218	3.041940	CCGAACGCTTCAACCGCT	61.042	61.111	0.00	0.00	0.00	5.52
2153	2219	2.170985	CGAACGCTTCAACCGCTG	59.829	61.111	0.00	0.00	0.00	5.18
2154	2220	2.594962	CGAACGCTTCAACCGCTGT	61.595	57.895	0.00	0.00	0.00	4.40
2155	2221	1.647084	GAACGCTTCAACCGCTGTT	59.353	52.632	0.00	0.00	34.14	3.16
2156	2222	0.384353	GAACGCTTCAACCGCTGTTC	60.384	55.000	0.00	0.00	35.53	3.18
2157	2223	0.814010	AACGCTTCAACCGCTGTTCT	60.814	50.000	0.00	0.00	30.42	3.01
2158	2224	0.814010	ACGCTTCAACCGCTGTTCTT	60.814	50.000	0.00	0.00	30.42	2.52
2159	2225	0.110644	CGCTTCAACCGCTGTTCTTC	60.111	55.000	0.00	0.00	30.42	2.87
2160	2226	1.230324	GCTTCAACCGCTGTTCTTCT	58.770	50.000	0.00	0.00	30.42	2.85
2161	2227	1.195674	GCTTCAACCGCTGTTCTTCTC	59.804	52.381	0.00	0.00	30.42	2.87
2162	2228	1.457303	CTTCAACCGCTGTTCTTCTCG	59.543	52.381	0.00	0.00	30.42	4.04
2163	2229	0.944311	TCAACCGCTGTTCTTCTCGC	60.944	55.000	0.00	0.00	30.42	5.03
2164	2230	1.069090	AACCGCTGTTCTTCTCGCA	59.931	52.632	0.00	0.00	0.00	5.10
2165	2231	0.320771	AACCGCTGTTCTTCTCGCAT	60.321	50.000	0.00	0.00	0.00	4.73
2166	2232	1.016130	ACCGCTGTTCTTCTCGCATG	61.016	55.000	0.00	0.00	0.00	4.06
2167	2233	1.059994	CGCTGTTCTTCTCGCATGC	59.940	57.895	7.91	7.91	0.00	4.06
2168	2234	1.059994	GCTGTTCTTCTCGCATGCG	59.940	57.895	33.61	33.61	41.35	4.73
2169	2235	1.630244	GCTGTTCTTCTCGCATGCGT	61.630	55.000	36.50	0.00	40.74	5.24
2170	2236	0.792640	CTGTTCTTCTCGCATGCGTT	59.207	50.000	36.50	0.00	40.74	4.84
2171	2237	0.790207	TGTTCTTCTCGCATGCGTTC	59.210	50.000	36.50	19.90	40.74	3.95
2172	2238	0.246912	GTTCTTCTCGCATGCGTTCG	60.247	55.000	36.50	25.41	40.74	3.95
2173	2239	0.666274	TTCTTCTCGCATGCGTTCGT	60.666	50.000	36.50	0.00	40.74	3.85
2174	2240	0.169451	TCTTCTCGCATGCGTTCGTA	59.831	50.000	36.50	18.42	40.74	3.43
2175	2241	1.200483	CTTCTCGCATGCGTTCGTAT	58.800	50.000	36.50	0.00	40.74	3.06
2176	2242	1.588404	CTTCTCGCATGCGTTCGTATT	59.412	47.619	36.50	0.00	40.74	1.89
2177	2243	1.197055	TCTCGCATGCGTTCGTATTC	58.803	50.000	36.50	0.00	40.74	1.75
2178	2244	0.920664	CTCGCATGCGTTCGTATTCA	59.079	50.000	36.50	15.45	40.74	2.57
2179	2245	1.522676	CTCGCATGCGTTCGTATTCAT	59.477	47.619	36.50	0.00	40.74	2.57
2180	2246	1.521006	TCGCATGCGTTCGTATTCATC	59.479	47.619	36.50	0.00	40.74	2.92
2181	2247	1.522676	CGCATGCGTTCGTATTCATCT	59.477	47.619	31.33	0.00	34.35	2.90
2182	2248	2.408991	CGCATGCGTTCGTATTCATCTC	60.409	50.000	31.33	0.00	34.35	2.75
2183	2249	2.797156	GCATGCGTTCGTATTCATCTCT	59.203	45.455	0.00	0.00	0.00	3.10
2184	2250	3.246226	GCATGCGTTCGTATTCATCTCTT	59.754	43.478	0.00	0.00	0.00	2.85
2185	2251	4.260375	GCATGCGTTCGTATTCATCTCTTT	60.260	41.667	0.00	0.00	0.00	2.52
2186	2252	5.727791	GCATGCGTTCGTATTCATCTCTTTT	60.728	40.000	0.00	0.00	0.00	2.27
2187	2253	5.450376	TGCGTTCGTATTCATCTCTTTTC	57.550	39.130	0.00	0.00	0.00	2.29
2188	2254	4.328983	TGCGTTCGTATTCATCTCTTTTCC	59.671	41.667	0.00	0.00	0.00	3.13
2189	2255	4.260253	GCGTTCGTATTCATCTCTTTTCCC	60.260	45.833	0.00	0.00	0.00	3.97
2190	2256	4.270325	CGTTCGTATTCATCTCTTTTCCCC	59.730	45.833	0.00	0.00	0.00	4.81
2191	2257	4.054780	TCGTATTCATCTCTTTTCCCCG	57.945	45.455	0.00	0.00	0.00	5.73
2192	2258	3.702548	TCGTATTCATCTCTTTTCCCCGA	59.297	43.478	0.00	0.00	0.00	5.14
2193	2259	4.344102	TCGTATTCATCTCTTTTCCCCGAT	59.656	41.667	0.00	0.00	0.00	4.18
2194	2260	4.686554	CGTATTCATCTCTTTTCCCCGATC	59.313	45.833	0.00	0.00	0.00	3.69
2195	2261	5.509840	CGTATTCATCTCTTTTCCCCGATCT	60.510	44.000	0.00	0.00	0.00	2.75
2196	2262	4.408182	TTCATCTCTTTTCCCCGATCTC	57.592	45.455	0.00	0.00	0.00	2.75
2197	2263	2.362397	TCATCTCTTTTCCCCGATCTCG	59.638	50.000	0.00	0.00	39.44	4.04
2198	2264	0.460311	TCTCTTTTCCCCGATCTCGC	59.540	55.000	0.00	0.00	38.18	5.03
2199	2265	0.872021	CTCTTTTCCCCGATCTCGCG	60.872	60.000	0.00	0.00	38.18	5.87
2200	2266	2.510691	TTTTCCCCGATCTCGCGC	60.511	61.111	0.00	0.00	38.18	6.86
2201	2267	3.303761	TTTTCCCCGATCTCGCGCA	62.304	57.895	8.75	0.00	38.18	6.09
2202	2268	3.716539	TTTCCCCGATCTCGCGCAG	62.717	63.158	8.75	4.17	38.18	5.18
2206	2272	4.498520	CCGATCTCGCGCAGGTGT	62.499	66.667	8.75	0.00	38.18	4.16
2207	2273	2.951745	CGATCTCGCGCAGGTGTC	60.952	66.667	8.75	0.00	0.00	3.67
2208	2274	2.181777	GATCTCGCGCAGGTGTCA	59.818	61.111	8.75	0.00	0.00	3.58
2209	2275	1.227089	GATCTCGCGCAGGTGTCAT	60.227	57.895	8.75	0.00	0.00	3.06
2210	2276	1.211818	GATCTCGCGCAGGTGTCATC	61.212	60.000	8.75	0.00	0.00	2.92
2211	2277	2.943680	ATCTCGCGCAGGTGTCATCG	62.944	60.000	8.75	0.00	0.00	3.84
2212	2278	3.683587	CTCGCGCAGGTGTCATCGA	62.684	63.158	8.75	0.00	0.00	3.59
2213	2279	2.809174	CGCGCAGGTGTCATCGAA	60.809	61.111	8.75	0.00	0.00	3.71
2214	2280	2.792290	CGCGCAGGTGTCATCGAAG	61.792	63.158	8.75	0.00	0.00	3.79
2215	2281	2.456119	GCGCAGGTGTCATCGAAGG	61.456	63.158	0.30	0.00	0.00	3.46
2216	2282	1.811266	CGCAGGTGTCATCGAAGGG	60.811	63.158	0.00	0.00	0.00	3.95
2217	2283	2.109126	GCAGGTGTCATCGAAGGGC	61.109	63.158	0.00	0.00	0.00	5.19
2218	2284	1.296392	CAGGTGTCATCGAAGGGCA	59.704	57.895	0.00	0.00	0.00	5.36
2219	2285	1.021390	CAGGTGTCATCGAAGGGCAC	61.021	60.000	14.66	14.66	0.00	5.01
2220	2286	2.100631	GGTGTCATCGAAGGGCACG	61.101	63.158	15.98	0.00	0.00	5.34
2221	2287	1.080093	GTGTCATCGAAGGGCACGA	60.080	57.895	9.06	0.00	43.65	4.35
2222	2288	1.078759	GTGTCATCGAAGGGCACGAG	61.079	60.000	9.06	0.00	42.81	4.18
2223	2289	1.519455	GTCATCGAAGGGCACGAGG	60.519	63.158	0.00	0.00	42.81	4.63
2224	2290	2.892425	CATCGAAGGGCACGAGGC	60.892	66.667	0.00	0.00	42.81	4.70
2225	2291	4.514577	ATCGAAGGGCACGAGGCG	62.515	66.667	0.00	0.00	46.16	5.52
2228	2294	4.821589	GAAGGGCACGAGGCGGAG	62.822	72.222	0.00	0.00	46.16	4.63
2241	2307	2.024871	CGGAGCTCGCCTTAGTCG	59.975	66.667	7.83	0.00	0.00	4.18
2242	2308	2.413765	GGAGCTCGCCTTAGTCGG	59.586	66.667	7.83	0.00	0.00	4.79
2243	2309	2.278923	GAGCTCGCCTTAGTCGGC	60.279	66.667	0.00	0.00	46.68	5.54
2250	2316	2.993539	GCCTTAGTCGGCCTCAATC	58.006	57.895	0.00	0.00	44.41	2.67
2251	2317	0.533085	GCCTTAGTCGGCCTCAATCC	60.533	60.000	0.00	0.00	44.41	3.01
2252	2318	0.106894	CCTTAGTCGGCCTCAATCCC	59.893	60.000	0.00	0.00	0.00	3.85
2253	2319	0.830648	CTTAGTCGGCCTCAATCCCA	59.169	55.000	0.00	0.00	0.00	4.37
2254	2320	0.830648	TTAGTCGGCCTCAATCCCAG	59.169	55.000	0.00	0.00	0.00	4.45
2255	2321	1.048724	TAGTCGGCCTCAATCCCAGG	61.049	60.000	0.00	0.00	0.00	4.45
2260	2326	4.113815	CCTCAATCCCAGGCGCCA	62.114	66.667	31.54	8.23	0.00	5.69
2261	2327	2.515523	CTCAATCCCAGGCGCCAG	60.516	66.667	31.54	22.32	0.00	4.85
2262	2328	4.802051	TCAATCCCAGGCGCCAGC	62.802	66.667	31.54	0.33	44.18	4.85
2263	2329	4.809496	CAATCCCAGGCGCCAGCT	62.809	66.667	31.54	4.59	44.37	4.24
2264	2330	4.496336	AATCCCAGGCGCCAGCTC	62.496	66.667	31.54	0.00	44.37	4.09
2276	2342	4.527583	CAGCTCCTCGCAGGCCTC	62.528	72.222	0.00	0.00	42.61	4.70
2308	2374	4.496336	GCGGCTGCTCCATTCCCT	62.496	66.667	11.21	0.00	38.39	4.20
2309	2375	3.106986	GCGGCTGCTCCATTCCCTA	62.107	63.158	11.21	0.00	38.39	3.53
2310	2376	1.227674	CGGCTGCTCCATTCCCTAC	60.228	63.158	0.00	0.00	34.01	3.18
2311	2377	1.149401	GGCTGCTCCATTCCCTACC	59.851	63.158	0.00	0.00	34.01	3.18
2312	2378	1.227674	GCTGCTCCATTCCCTACCG	60.228	63.158	0.00	0.00	0.00	4.02
2313	2379	1.227674	CTGCTCCATTCCCTACCGC	60.228	63.158	0.00	0.00	0.00	5.68
2314	2380	2.280186	GCTCCATTCCCTACCGCG	60.280	66.667	0.00	0.00	0.00	6.46
2315	2381	2.280186	CTCCATTCCCTACCGCGC	60.280	66.667	0.00	0.00	0.00	6.86
2316	2382	3.078196	TCCATTCCCTACCGCGCA	61.078	61.111	8.75	0.00	0.00	6.09
2317	2383	2.588877	CCATTCCCTACCGCGCAG	60.589	66.667	8.75	0.00	0.00	5.18
2342	2408	3.353836	GCCGGCGTTGTCACACAT	61.354	61.111	12.58	0.00	0.00	3.21
2343	2409	2.860293	CCGGCGTTGTCACACATC	59.140	61.111	6.01	0.00	0.00	3.06
2344	2410	1.667830	CCGGCGTTGTCACACATCT	60.668	57.895	6.01	0.00	0.00	2.90
2345	2411	1.492873	CGGCGTTGTCACACATCTG	59.507	57.895	0.00	0.00	0.00	2.90
2346	2412	1.207593	GGCGTTGTCACACATCTGC	59.792	57.895	0.00	0.00	0.00	4.26
2347	2413	1.230635	GGCGTTGTCACACATCTGCT	61.231	55.000	0.00	0.00	0.00	4.24
2348	2414	0.164647	GCGTTGTCACACATCTGCTC	59.835	55.000	0.00	0.00	0.00	4.26
2349	2415	0.436150	CGTTGTCACACATCTGCTCG	59.564	55.000	0.00	0.00	0.00	5.03
2350	2416	0.792640	GTTGTCACACATCTGCTCGG	59.207	55.000	0.00	0.00	0.00	4.63
2351	2417	0.678950	TTGTCACACATCTGCTCGGA	59.321	50.000	0.00	0.00	0.00	4.55
2352	2418	0.244721	TGTCACACATCTGCTCGGAG	59.755	55.000	0.00	0.00	0.00	4.63
2353	2419	1.080995	GTCACACATCTGCTCGGAGC	61.081	60.000	22.78	22.78	42.82	4.70
2354	2420	1.217511	CACACATCTGCTCGGAGCT	59.782	57.895	28.42	7.97	42.97	4.09
2355	2421	0.805322	CACACATCTGCTCGGAGCTC	60.805	60.000	28.42	4.71	42.97	4.09
2356	2422	1.588403	CACATCTGCTCGGAGCTCG	60.588	63.158	28.42	19.51	42.97	5.03
2357	2423	2.657944	CATCTGCTCGGAGCTCGC	60.658	66.667	28.42	6.38	42.97	5.03
2358	2424	3.910490	ATCTGCTCGGAGCTCGCC	61.910	66.667	28.42	2.18	42.97	5.54
2366	2432	4.593864	GGAGCTCGCCGGTGATCC	62.594	72.222	19.93	19.54	35.37	3.36
2367	2433	3.532155	GAGCTCGCCGGTGATCCT	61.532	66.667	19.93	17.43	0.00	3.24
2368	2434	2.123854	AGCTCGCCGGTGATCCTA	60.124	61.111	19.93	0.00	0.00	2.94
2369	2435	2.136196	GAGCTCGCCGGTGATCCTAG	62.136	65.000	19.93	7.55	0.00	3.02
2370	2436	2.491022	GCTCGCCGGTGATCCTAGT	61.491	63.158	19.93	0.00	0.00	2.57
2371	2437	1.170919	GCTCGCCGGTGATCCTAGTA	61.171	60.000	19.93	0.00	0.00	1.82
2372	2438	0.875728	CTCGCCGGTGATCCTAGTAG	59.124	60.000	19.93	0.00	0.00	2.57
2373	2439	1.170919	TCGCCGGTGATCCTAGTAGC	61.171	60.000	15.21	0.00	0.00	3.58
2374	2440	1.173444	CGCCGGTGATCCTAGTAGCT	61.173	60.000	10.20	0.00	0.00	3.32
2375	2441	0.315568	GCCGGTGATCCTAGTAGCTG	59.684	60.000	1.90	0.00	0.00	4.24
2376	2442	1.693627	CCGGTGATCCTAGTAGCTGT	58.306	55.000	0.00	0.00	0.00	4.40
2377	2443	1.338337	CCGGTGATCCTAGTAGCTGTG	59.662	57.143	0.00	0.00	0.00	3.66
2378	2444	2.025155	CGGTGATCCTAGTAGCTGTGT	58.975	52.381	0.00	0.00	0.00	3.72
2379	2445	3.211865	CGGTGATCCTAGTAGCTGTGTA	58.788	50.000	0.00	0.00	0.00	2.90
2380	2446	3.251245	CGGTGATCCTAGTAGCTGTGTAG	59.749	52.174	0.00	0.00	0.00	2.74
2381	2447	4.208746	GGTGATCCTAGTAGCTGTGTAGT	58.791	47.826	0.00	0.00	0.00	2.73
2382	2448	4.036971	GGTGATCCTAGTAGCTGTGTAGTG	59.963	50.000	0.00	0.00	0.00	2.74
2383	2449	4.882427	GTGATCCTAGTAGCTGTGTAGTGA	59.118	45.833	0.00	0.00	0.00	3.41
2384	2450	4.882427	TGATCCTAGTAGCTGTGTAGTGAC	59.118	45.833	0.00	0.00	0.00	3.67
2385	2451	3.618351	TCCTAGTAGCTGTGTAGTGACC	58.382	50.000	0.00	0.00	0.00	4.02
2386	2452	3.009805	TCCTAGTAGCTGTGTAGTGACCA	59.990	47.826	0.00	0.00	0.00	4.02
2387	2453	3.128938	CCTAGTAGCTGTGTAGTGACCAC	59.871	52.174	0.00	0.00	0.00	4.16
2388	2454	1.540267	AGTAGCTGTGTAGTGACCACG	59.460	52.381	0.00	0.00	35.56	4.94
2389	2455	0.885879	TAGCTGTGTAGTGACCACGG	59.114	55.000	0.00	0.00	41.22	4.94
2390	2456	1.113517	AGCTGTGTAGTGACCACGGT	61.114	55.000	3.39	0.00	40.56	4.83
2391	2457	0.944311	GCTGTGTAGTGACCACGGTG	60.944	60.000	0.00	0.00	40.56	4.94
2392	2458	0.319555	CTGTGTAGTGACCACGGTGG	60.320	60.000	25.21	25.21	45.02	4.61
2393	2459	1.666872	GTGTAGTGACCACGGTGGC	60.667	63.158	26.62	18.80	42.67	5.01
2394	2460	2.431942	GTAGTGACCACGGTGGCG	60.432	66.667	26.62	4.93	42.67	5.69
2395	2461	4.367023	TAGTGACCACGGTGGCGC	62.367	66.667	26.62	22.87	42.67	6.53
2410	2476	2.027460	CGCCTTGCACGCCTTTTT	59.973	55.556	0.00	0.00	0.00	1.94
2427	2493	0.591170	TTTTTGCTACCAGCGAGTGC	59.409	50.000	0.00	0.00	46.26	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	5.992217	AGTAACGAGGAATCAGGCAATATTC	59.008	40.000	0.00	0.00	0.00	1.75
39	40	5.552870	AGTAACGAGGAATCAGGCAATAT	57.447	39.130	0.00	0.00	0.00	1.28
55	56	5.618056	TTAGTCTGTCACCTGTAGTAACG	57.382	43.478	0.00	0.00	0.00	3.18
72	73	5.858581	GCAATGGATTGACACTTGTTTAGTC	59.141	40.000	3.47	0.00	40.14	2.59
75	76	5.301551	AGTGCAATGGATTGACACTTGTTTA	59.698	36.000	16.84	0.00	44.62	2.01
83	84	3.890756	ACAGAAAGTGCAATGGATTGACA	59.109	39.130	3.47	0.00	40.14	3.58
104	105	7.272037	TCACAAATCAAGGAAGGTAAGAAAC	57.728	36.000	0.00	0.00	0.00	2.78
125	126	2.299867	ACTTGAAATTGGCCACCATCAC	59.700	45.455	3.88	0.00	31.53	3.06
148	152	4.213564	ACTCTCCAAGCAGGACAATAAG	57.786	45.455	0.00	0.00	43.07	1.73
151	155	2.553904	CCAACTCTCCAAGCAGGACAAT	60.554	50.000	0.00	0.00	43.07	2.71
268	274	1.078918	CGGTCATCAGGCTGCTCAA	60.079	57.895	10.34	0.00	0.00	3.02
305	320	3.859414	GCTCCTCCTCTGGCGCAT	61.859	66.667	10.83	0.00	37.72	4.73
487	505	2.279784	CCATCTCGAGAAGGCGGC	60.280	66.667	22.67	0.00	0.00	6.53
528	546	1.863454	CATCACAGGTTATCAGCGCTC	59.137	52.381	7.13	0.00	0.00	5.03
541	559	9.681692	TTTGTCATTACTTTTGATTCATCACAG	57.318	29.630	0.00	0.00	36.36	3.66
551	569	7.925993	ACGAGTTCATTTGTCATTACTTTTGA	58.074	30.769	0.00	0.00	0.00	2.69
555	573	9.436957	AAGATACGAGTTCATTTGTCATTACTT	57.563	29.630	0.00	0.00	0.00	2.24
556	574	9.436957	AAAGATACGAGTTCATTTGTCATTACT	57.563	29.630	0.00	0.00	0.00	2.24
565	583	9.326413	CCCAGTAATAAAGATACGAGTTCATTT	57.674	33.333	0.00	0.00	0.00	2.32
566	584	8.701895	TCCCAGTAATAAAGATACGAGTTCATT	58.298	33.333	0.00	0.00	0.00	2.57
567	585	8.246430	TCCCAGTAATAAAGATACGAGTTCAT	57.754	34.615	0.00	0.00	0.00	2.57
568	586	7.649533	TCCCAGTAATAAAGATACGAGTTCA	57.350	36.000	0.00	0.00	0.00	3.18
569	587	8.358148	TCATCCCAGTAATAAAGATACGAGTTC	58.642	37.037	0.00	0.00	0.00	3.01
570	588	8.246430	TCATCCCAGTAATAAAGATACGAGTT	57.754	34.615	0.00	0.00	0.00	3.01
572	590	8.307483	ACATCATCCCAGTAATAAAGATACGAG	58.693	37.037	0.00	0.00	0.00	4.18
586	604	9.373450	GAGGATATATATGTACATCATCCCAGT	57.627	37.037	22.61	12.65	37.91	4.00
589	607	9.593565	TCAGAGGATATATATGTACATCATCCC	57.406	37.037	22.61	16.64	37.91	3.85
597	615	6.239064	CCGCCCTTCAGAGGATATATATGTAC	60.239	46.154	0.00	0.00	46.74	2.90
598	616	5.833667	CCGCCCTTCAGAGGATATATATGTA	59.166	44.000	0.00	0.00	46.74	2.29
601	621	3.643792	GCCGCCCTTCAGAGGATATATAT	59.356	47.826	0.00	0.00	46.74	0.86
610	630	2.203126	GGATGCCGCCCTTCAGAG	60.203	66.667	0.00	0.00	0.00	3.35
621	641	2.988684	TTGCACCGGTTGGATGCC	60.989	61.111	2.97	0.00	38.63	4.40
622	642	2.258286	GTTGCACCGGTTGGATGC	59.742	61.111	2.97	5.51	39.21	3.91
623	643	2.560861	CGTTGCACCGGTTGGATG	59.439	61.111	2.97	0.00	39.21	3.51
624	644	2.671619	CCGTTGCACCGGTTGGAT	60.672	61.111	15.48	0.00	43.07	3.41
631	651	3.411351	CTCCGAACCGTTGCACCG	61.411	66.667	0.00	0.00	0.00	4.94
633	653	1.006571	TCTCTCCGAACCGTTGCAC	60.007	57.895	0.00	0.00	0.00	4.57
634	654	1.006571	GTCTCTCCGAACCGTTGCA	60.007	57.895	0.00	0.00	0.00	4.08
635	655	1.006571	TGTCTCTCCGAACCGTTGC	60.007	57.895	0.00	0.00	0.00	4.17
641	661	1.137825	CGCTCCTGTCTCTCCGAAC	59.862	63.158	0.00	0.00	0.00	3.95
644	664	1.431440	CTTCGCTCCTGTCTCTCCG	59.569	63.158	0.00	0.00	0.00	4.63
651	671	2.600769	ACGTCCCTTCGCTCCTGT	60.601	61.111	0.00	0.00	0.00	4.00
653	673	1.682684	ATCACGTCCCTTCGCTCCT	60.683	57.895	0.00	0.00	0.00	3.69
658	678	1.922570	CTAACCATCACGTCCCTTCG	58.077	55.000	0.00	0.00	0.00	3.79
663	683	2.604046	ATCTGCTAACCATCACGTCC	57.396	50.000	0.00	0.00	0.00	4.79
678	698	2.040178	AGGGAGGCGGTTAGTTATCTG	58.960	52.381	0.00	0.00	0.00	2.90
679	699	2.473576	AGGGAGGCGGTTAGTTATCT	57.526	50.000	0.00	0.00	0.00	1.98
680	700	4.040095	ACATTAGGGAGGCGGTTAGTTATC	59.960	45.833	0.00	0.00	0.00	1.75
681	701	3.971971	ACATTAGGGAGGCGGTTAGTTAT	59.028	43.478	0.00	0.00	0.00	1.89
682	702	3.377573	ACATTAGGGAGGCGGTTAGTTA	58.622	45.455	0.00	0.00	0.00	2.24
683	703	2.193993	ACATTAGGGAGGCGGTTAGTT	58.806	47.619	0.00	0.00	0.00	2.24
684	704	1.875488	ACATTAGGGAGGCGGTTAGT	58.125	50.000	0.00	0.00	0.00	2.24
685	705	3.725490	GTTACATTAGGGAGGCGGTTAG	58.275	50.000	0.00	0.00	0.00	2.34
686	706	2.101249	CGTTACATTAGGGAGGCGGTTA	59.899	50.000	0.00	0.00	0.00	2.85
687	707	1.134610	CGTTACATTAGGGAGGCGGTT	60.135	52.381	0.00	0.00	0.00	4.44
688	708	0.462789	CGTTACATTAGGGAGGCGGT	59.537	55.000	0.00	0.00	0.00	5.68
689	709	0.462789	ACGTTACATTAGGGAGGCGG	59.537	55.000	0.00	0.00	0.00	6.13
690	710	1.567504	CACGTTACATTAGGGAGGCG	58.432	55.000	0.00	0.00	0.00	5.52
691	711	1.483415	TCCACGTTACATTAGGGAGGC	59.517	52.381	0.00	0.00	0.00	4.70
692	712	3.028850	TCTCCACGTTACATTAGGGAGG	58.971	50.000	12.73	0.00	41.70	4.30
693	713	4.939052	ATCTCCACGTTACATTAGGGAG	57.061	45.455	7.75	7.75	42.53	4.30
694	714	6.014840	GGATAATCTCCACGTTACATTAGGGA	60.015	42.308	0.00	0.00	44.26	4.20
695	715	6.164176	GGATAATCTCCACGTTACATTAGGG	58.836	44.000	0.00	0.00	44.26	3.53
778	799	9.141400	CCCGTCTTATCTTGCTTTATTACTATC	57.859	37.037	0.00	0.00	0.00	2.08
790	811	1.849097	CCGTACCCGTCTTATCTTGC	58.151	55.000	0.00	0.00	0.00	4.01
791	812	1.537562	GGCCGTACCCGTCTTATCTTG	60.538	57.143	0.00	0.00	0.00	3.02
831	853	8.942338	TTAAATGCTATAGGGATATACTTGCG	57.058	34.615	1.04	0.00	0.00	4.85
990	1047	2.115291	GTCGGCCATCTGCTTTCCC	61.115	63.158	2.24	0.00	40.92	3.97
1059	1116	3.914426	ATGAACTTGTTCCGGCTAGAT	57.086	42.857	10.51	0.00	0.00	1.98
1132	1189	0.382515	AAAGCGCCGTAAAACTGCAA	59.617	45.000	2.29	0.00	0.00	4.08
1245	1302	2.622942	TCTCCGTTGCAAGCAAAGATTT	59.377	40.909	19.67	0.00	37.55	2.17
1459	1524	3.003480	CCTAGCACAACTAGCACTTTCC	58.997	50.000	0.00	0.00	46.17	3.13
1523	1588	7.670605	ACCTGCCAGACTAGTATTGTATAAA	57.329	36.000	0.00	0.00	0.00	1.40
1543	1608	6.575162	AACTCAAAGGTAATTGCTAACCTG	57.425	37.500	0.00	0.00	45.51	4.00
1559	1624	6.694447	ACACGAACCTTAGCTATAACTCAAA	58.306	36.000	0.00	0.00	0.00	2.69
1567	1632	2.097825	ACCGACACGAACCTTAGCTAT	58.902	47.619	0.00	0.00	0.00	2.97
1672	1738	5.675684	ATTACATCTTCCCCGCAAATTTT	57.324	34.783	0.00	0.00	0.00	1.82
1673	1739	5.891551	ACTATTACATCTTCCCCGCAAATTT	59.108	36.000	0.00	0.00	0.00	1.82
1674	1740	5.445964	ACTATTACATCTTCCCCGCAAATT	58.554	37.500	0.00	0.00	0.00	1.82
1675	1741	5.048846	ACTATTACATCTTCCCCGCAAAT	57.951	39.130	0.00	0.00	0.00	2.32
1676	1742	4.497291	ACTATTACATCTTCCCCGCAAA	57.503	40.909	0.00	0.00	0.00	3.68
1677	1743	4.497291	AACTATTACATCTTCCCCGCAA	57.503	40.909	0.00	0.00	0.00	4.85
1678	1744	4.497291	AAACTATTACATCTTCCCCGCA	57.503	40.909	0.00	0.00	0.00	5.69
1679	1745	8.092687	TCTAATAAACTATTACATCTTCCCCGC	58.907	37.037	0.00	0.00	0.00	6.13
1680	1746	9.640963	CTCTAATAAACTATTACATCTTCCCCG	57.359	37.037	0.00	0.00	0.00	5.73
1681	1747	9.945904	CCTCTAATAAACTATTACATCTTCCCC	57.054	37.037	0.00	0.00	0.00	4.81
1701	1767	8.988060	TGTGATTTCCAGTGATATTACCTCTAA	58.012	33.333	0.00	0.00	0.00	2.10
1702	1768	8.547481	TGTGATTTCCAGTGATATTACCTCTA	57.453	34.615	0.00	0.00	0.00	2.43
1703	1769	7.437713	TGTGATTTCCAGTGATATTACCTCT	57.562	36.000	0.00	0.00	0.00	3.69
1704	1770	9.778741	TTATGTGATTTCCAGTGATATTACCTC	57.221	33.333	0.00	0.00	0.00	3.85
1728	1794	9.877178	ACCAAACTAAACATTCAACACAAATTA	57.123	25.926	0.00	0.00	0.00	1.40
1729	1795	8.663911	CACCAAACTAAACATTCAACACAAATT	58.336	29.630	0.00	0.00	0.00	1.82
1730	1796	7.821846	ACACCAAACTAAACATTCAACACAAAT	59.178	29.630	0.00	0.00	0.00	2.32
1731	1797	7.155328	ACACCAAACTAAACATTCAACACAAA	58.845	30.769	0.00	0.00	0.00	2.83
1732	1798	6.692486	ACACCAAACTAAACATTCAACACAA	58.308	32.000	0.00	0.00	0.00	3.33
1733	1799	6.274157	ACACCAAACTAAACATTCAACACA	57.726	33.333	0.00	0.00	0.00	3.72
1734	1800	8.865590	ATAACACCAAACTAAACATTCAACAC	57.134	30.769	0.00	0.00	0.00	3.32
1768	1834	9.620660	GTTAGATGACCACAAATTCGTATTTTT	57.379	29.630	0.00	0.00	31.63	1.94
1769	1835	9.010029	AGTTAGATGACCACAAATTCGTATTTT	57.990	29.630	0.00	0.00	31.63	1.82
1770	1836	8.561738	AGTTAGATGACCACAAATTCGTATTT	57.438	30.769	0.00	0.00	34.29	1.40
1771	1837	8.450964	CAAGTTAGATGACCACAAATTCGTATT	58.549	33.333	0.00	0.00	0.00	1.89
1772	1838	7.822334	TCAAGTTAGATGACCACAAATTCGTAT	59.178	33.333	0.00	0.00	0.00	3.06
1773	1839	7.117236	GTCAAGTTAGATGACCACAAATTCGTA	59.883	37.037	0.00	0.00	41.02	3.43
1774	1840	5.995282	TCAAGTTAGATGACCACAAATTCGT	59.005	36.000	0.00	0.00	0.00	3.85
1775	1841	6.147821	AGTCAAGTTAGATGACCACAAATTCG	59.852	38.462	3.23	0.00	46.60	3.34
1776	1842	7.173218	TGAGTCAAGTTAGATGACCACAAATTC	59.827	37.037	3.23	0.00	46.60	2.17
1777	1843	6.998074	TGAGTCAAGTTAGATGACCACAAATT	59.002	34.615	3.23	0.00	46.60	1.82
1778	1844	6.533730	TGAGTCAAGTTAGATGACCACAAAT	58.466	36.000	3.23	0.00	46.60	2.32
1779	1845	5.924356	TGAGTCAAGTTAGATGACCACAAA	58.076	37.500	3.23	0.00	46.60	2.83
1780	1846	5.545063	TGAGTCAAGTTAGATGACCACAA	57.455	39.130	3.23	0.00	46.60	3.33
1781	1847	5.541845	CTTGAGTCAAGTTAGATGACCACA	58.458	41.667	22.48	2.47	46.60	4.17
1782	1848	4.390297	GCTTGAGTCAAGTTAGATGACCAC	59.610	45.833	28.95	8.47	46.60	4.16
1783	1849	4.040339	TGCTTGAGTCAAGTTAGATGACCA	59.960	41.667	28.95	15.04	46.60	4.02
1784	1850	4.569943	TGCTTGAGTCAAGTTAGATGACC	58.430	43.478	28.95	12.92	46.60	4.02
1785	1851	6.163159	CTTGCTTGAGTCAAGTTAGATGAC	57.837	41.667	28.95	13.54	45.94	3.06
1864	1930	8.597227	CGTGCAAAAATCATCACAATATTTGAT	58.403	29.630	0.00	7.09	33.81	2.57
1865	1931	7.811713	TCGTGCAAAAATCATCACAATATTTGA	59.188	29.630	0.00	3.77	0.00	2.69
1866	1932	7.951287	TCGTGCAAAAATCATCACAATATTTG	58.049	30.769	0.00	0.00	0.00	2.32
1867	1933	8.434661	GTTCGTGCAAAAATCATCACAATATTT	58.565	29.630	0.00	0.00	0.00	1.40
1868	1934	7.598118	TGTTCGTGCAAAAATCATCACAATATT	59.402	29.630	0.00	0.00	0.00	1.28
1869	1935	7.089538	TGTTCGTGCAAAAATCATCACAATAT	58.910	30.769	0.00	0.00	0.00	1.28
1870	1936	6.442112	TGTTCGTGCAAAAATCATCACAATA	58.558	32.000	0.00	0.00	0.00	1.90
1871	1937	5.288015	TGTTCGTGCAAAAATCATCACAAT	58.712	33.333	0.00	0.00	0.00	2.71
1872	1938	4.676546	TGTTCGTGCAAAAATCATCACAA	58.323	34.783	0.00	0.00	0.00	3.33
1873	1939	4.298744	TGTTCGTGCAAAAATCATCACA	57.701	36.364	0.00	0.00	0.00	3.58
1874	1940	5.156355	AGATGTTCGTGCAAAAATCATCAC	58.844	37.500	16.55	0.00	34.55	3.06
1875	1941	5.375417	AGATGTTCGTGCAAAAATCATCA	57.625	34.783	16.55	0.26	34.55	3.07
1876	1942	5.858049	TGAAGATGTTCGTGCAAAAATCATC	59.142	36.000	4.49	7.68	35.17	2.92
1877	1943	5.630680	GTGAAGATGTTCGTGCAAAAATCAT	59.369	36.000	4.49	0.00	35.17	2.45
1878	1944	4.975502	GTGAAGATGTTCGTGCAAAAATCA	59.024	37.500	4.49	0.00	35.17	2.57
1879	1945	4.975502	TGTGAAGATGTTCGTGCAAAAATC	59.024	37.500	0.00	0.00	35.17	2.17
1880	1946	4.930963	TGTGAAGATGTTCGTGCAAAAAT	58.069	34.783	0.00	0.00	35.17	1.82
1881	1947	4.362932	TGTGAAGATGTTCGTGCAAAAA	57.637	36.364	0.00	0.00	35.17	1.94
1882	1948	4.566545	ATGTGAAGATGTTCGTGCAAAA	57.433	36.364	0.00	0.00	35.17	2.44
1883	1949	4.566545	AATGTGAAGATGTTCGTGCAAA	57.433	36.364	0.00	0.00	35.17	3.68
1884	1950	4.566545	AAATGTGAAGATGTTCGTGCAA	57.433	36.364	0.00	0.00	35.17	4.08
1885	1951	4.566545	AAAATGTGAAGATGTTCGTGCA	57.433	36.364	0.00	0.00	35.17	4.57
1886	1952	6.984740	TTAAAAATGTGAAGATGTTCGTGC	57.015	33.333	0.00	0.00	35.17	5.34
1887	1953	9.782028	CAAATTAAAAATGTGAAGATGTTCGTG	57.218	29.630	0.00	0.00	35.17	4.35
1888	1954	9.528018	ACAAATTAAAAATGTGAAGATGTTCGT	57.472	25.926	0.00	0.00	35.17	3.85
1889	1955	9.782028	CACAAATTAAAAATGTGAAGATGTTCG	57.218	29.630	11.21	0.00	45.61	3.95
1891	1957	9.829507	TCCACAAATTAAAAATGTGAAGATGTT	57.170	25.926	15.99	0.00	45.61	2.71
1892	1958	9.829507	TTCCACAAATTAAAAATGTGAAGATGT	57.170	25.926	15.99	0.00	45.61	3.06
1895	1961	8.772705	GCATTCCACAAATTAAAAATGTGAAGA	58.227	29.630	15.99	6.77	45.61	2.87
1896	1962	8.776470	AGCATTCCACAAATTAAAAATGTGAAG	58.224	29.630	15.99	5.10	45.61	3.02
1897	1963	8.674263	AGCATTCCACAAATTAAAAATGTGAA	57.326	26.923	15.99	10.58	45.61	3.18
1898	1964	7.930325	TGAGCATTCCACAAATTAAAAATGTGA	59.070	29.630	15.99	2.85	45.61	3.58
1899	1965	8.085720	TGAGCATTCCACAAATTAAAAATGTG	57.914	30.769	10.17	10.17	43.10	3.21
1900	1966	8.851541	ATGAGCATTCCACAAATTAAAAATGT	57.148	26.923	0.00	0.00	0.00	2.71
1906	1972	9.806203	CTCATTTATGAGCATTCCACAAATTAA	57.194	29.630	6.79	0.00	46.63	1.40
1922	1988	9.755804	TTTTGTGTTATGTTTGCTCATTTATGA	57.244	25.926	0.00	0.00	35.16	2.15
1946	2012	2.922503	CCTTGCGGCCCCCTTTTT	60.923	61.111	0.00	0.00	0.00	1.94
1947	2013	4.233558	ACCTTGCGGCCCCCTTTT	62.234	61.111	0.00	0.00	0.00	2.27
1948	2014	4.678743	GACCTTGCGGCCCCCTTT	62.679	66.667	0.00	0.00	0.00	3.11
1953	2019	4.388499	TTCGAGACCTTGCGGCCC	62.388	66.667	0.00	0.00	0.00	5.80
1954	2020	3.119096	GTTCGAGACCTTGCGGCC	61.119	66.667	0.00	0.00	0.00	6.13
1955	2021	3.119096	GGTTCGAGACCTTGCGGC	61.119	66.667	8.87	0.00	45.55	6.53
1962	2028	2.126031	GGTCGCAGGTTCGAGACC	60.126	66.667	3.79	3.79	46.49	3.85
1963	2029	1.006571	TTGGTCGCAGGTTCGAGAC	60.007	57.895	0.00	0.00	39.34	3.36
1964	2030	1.176619	TCTTGGTCGCAGGTTCGAGA	61.177	55.000	0.00	0.00	39.34	4.04
1965	2031	0.319555	TTCTTGGTCGCAGGTTCGAG	60.320	55.000	0.00	0.00	39.34	4.04
1966	2032	0.320374	ATTCTTGGTCGCAGGTTCGA	59.680	50.000	0.00	0.00	35.95	3.71
1967	2033	1.156736	AATTCTTGGTCGCAGGTTCG	58.843	50.000	0.00	0.00	0.00	3.95
1968	2034	3.500680	TGTTAATTCTTGGTCGCAGGTTC	59.499	43.478	0.00	0.00	0.00	3.62
1969	2035	3.482436	TGTTAATTCTTGGTCGCAGGTT	58.518	40.909	0.00	0.00	0.00	3.50
1970	2036	3.134574	TGTTAATTCTTGGTCGCAGGT	57.865	42.857	0.00	0.00	0.00	4.00
1971	2037	4.226761	GTTTGTTAATTCTTGGTCGCAGG	58.773	43.478	0.00	0.00	0.00	4.85
1972	2038	3.906008	CGTTTGTTAATTCTTGGTCGCAG	59.094	43.478	0.00	0.00	0.00	5.18
1973	2039	3.560481	TCGTTTGTTAATTCTTGGTCGCA	59.440	39.130	0.00	0.00	0.00	5.10
1974	2040	4.136517	TCGTTTGTTAATTCTTGGTCGC	57.863	40.909	0.00	0.00	0.00	5.19
1975	2041	4.148891	GCTCGTTTGTTAATTCTTGGTCG	58.851	43.478	0.00	0.00	0.00	4.79
1976	2042	4.473199	GGCTCGTTTGTTAATTCTTGGTC	58.527	43.478	0.00	0.00	0.00	4.02
1977	2043	3.254903	GGGCTCGTTTGTTAATTCTTGGT	59.745	43.478	0.00	0.00	0.00	3.67
1978	2044	3.506067	AGGGCTCGTTTGTTAATTCTTGG	59.494	43.478	0.00	0.00	0.00	3.61
1979	2045	4.475944	CAGGGCTCGTTTGTTAATTCTTG	58.524	43.478	0.00	0.00	0.00	3.02
1980	2046	3.057526	GCAGGGCTCGTTTGTTAATTCTT	60.058	43.478	0.00	0.00	0.00	2.52
1981	2047	2.488153	GCAGGGCTCGTTTGTTAATTCT	59.512	45.455	0.00	0.00	0.00	2.40
1982	2048	2.488153	AGCAGGGCTCGTTTGTTAATTC	59.512	45.455	0.00	0.00	30.62	2.17
1983	2049	2.514803	AGCAGGGCTCGTTTGTTAATT	58.485	42.857	0.00	0.00	30.62	1.40
1984	2050	2.200373	AGCAGGGCTCGTTTGTTAAT	57.800	45.000	0.00	0.00	30.62	1.40
1985	2051	1.975660	AAGCAGGGCTCGTTTGTTAA	58.024	45.000	0.00	0.00	38.25	2.01
1986	2052	1.877443	GAAAGCAGGGCTCGTTTGTTA	59.123	47.619	0.00	0.00	38.25	2.41
1987	2053	0.668535	GAAAGCAGGGCTCGTTTGTT	59.331	50.000	0.00	0.00	38.25	2.83
1988	2054	0.465460	TGAAAGCAGGGCTCGTTTGT	60.465	50.000	0.00	0.00	38.25	2.83
1989	2055	0.667993	TTGAAAGCAGGGCTCGTTTG	59.332	50.000	0.00	0.00	38.25	2.93
1990	2056	1.398692	TTTGAAAGCAGGGCTCGTTT	58.601	45.000	0.00	0.00	38.25	3.60
1991	2057	1.398692	TTTTGAAAGCAGGGCTCGTT	58.601	45.000	0.00	0.00	38.25	3.85
1992	2058	1.398692	TTTTTGAAAGCAGGGCTCGT	58.601	45.000	0.00	0.00	38.25	4.18
2021	2087	3.681593	TGTTATAGCAGGGCTCGTTTTT	58.318	40.909	0.00	0.00	40.44	1.94
2022	2088	3.343941	TGTTATAGCAGGGCTCGTTTT	57.656	42.857	0.00	0.00	40.44	2.43
2023	2089	3.007635	GTTGTTATAGCAGGGCTCGTTT	58.992	45.455	0.00	0.00	40.44	3.60
2024	2090	2.236395	AGTTGTTATAGCAGGGCTCGTT	59.764	45.455	0.00	0.00	40.44	3.85
2025	2091	1.831736	AGTTGTTATAGCAGGGCTCGT	59.168	47.619	0.00	0.00	40.44	4.18
2026	2092	2.604046	AGTTGTTATAGCAGGGCTCG	57.396	50.000	0.00	0.00	40.44	5.03
2027	2093	4.402056	TGTAGTTGTTATAGCAGGGCTC	57.598	45.455	0.00	0.00	40.44	4.70
2028	2094	4.019681	TGTTGTAGTTGTTATAGCAGGGCT	60.020	41.667	0.00	0.00	43.41	5.19
2029	2095	4.258543	TGTTGTAGTTGTTATAGCAGGGC	58.741	43.478	0.00	0.00	0.00	5.19
2030	2096	4.332819	GCTGTTGTAGTTGTTATAGCAGGG	59.667	45.833	0.00	0.00	34.00	4.45
2031	2097	4.332819	GGCTGTTGTAGTTGTTATAGCAGG	59.667	45.833	0.00	0.00	34.00	4.85
2032	2098	5.178797	AGGCTGTTGTAGTTGTTATAGCAG	58.821	41.667	0.00	0.00	35.67	4.24
2033	2099	5.046591	AGAGGCTGTTGTAGTTGTTATAGCA	60.047	40.000	0.00	0.00	0.00	3.49
2034	2100	5.420409	AGAGGCTGTTGTAGTTGTTATAGC	58.580	41.667	0.00	0.00	0.00	2.97
2035	2101	6.183360	GCAAGAGGCTGTTGTAGTTGTTATAG	60.183	42.308	23.33	0.00	40.25	1.31
2036	2102	5.642063	GCAAGAGGCTGTTGTAGTTGTTATA	59.358	40.000	23.33	0.00	40.25	0.98
2037	2103	4.455877	GCAAGAGGCTGTTGTAGTTGTTAT	59.544	41.667	23.33	0.00	40.25	1.89
2038	2104	3.813166	GCAAGAGGCTGTTGTAGTTGTTA	59.187	43.478	23.33	0.00	40.25	2.41
2039	2105	2.618709	GCAAGAGGCTGTTGTAGTTGTT	59.381	45.455	23.33	0.00	40.25	2.83
2040	2106	2.222027	GCAAGAGGCTGTTGTAGTTGT	58.778	47.619	23.33	0.00	40.25	3.32
2041	2107	2.977405	GCAAGAGGCTGTTGTAGTTG	57.023	50.000	23.33	0.41	40.25	3.16
2052	2118	0.731417	CAGTATGTGCAGCAAGAGGC	59.269	55.000	0.00	0.00	45.30	4.70
2063	2129	1.203052	CAAAAGGGGCTGCAGTATGTG	59.797	52.381	16.64	1.28	39.31	3.21
2064	2130	1.549203	CAAAAGGGGCTGCAGTATGT	58.451	50.000	16.64	0.00	39.31	2.29
2065	2131	0.174162	GCAAAAGGGGCTGCAGTATG	59.826	55.000	16.64	5.49	38.48	2.39
2066	2132	0.251742	TGCAAAAGGGGCTGCAGTAT	60.252	50.000	16.64	0.00	43.44	2.12
2067	2133	1.152599	TGCAAAAGGGGCTGCAGTA	59.847	52.632	16.64	0.00	43.44	2.74
2068	2134	2.123338	TGCAAAAGGGGCTGCAGT	60.123	55.556	16.64	0.00	43.44	4.40
2070	2136	3.604667	CGTGCAAAAGGGGCTGCA	61.605	61.111	0.50	0.00	46.01	4.41
2072	2138	4.705519	CGCGTGCAAAAGGGGCTG	62.706	66.667	0.00	0.00	0.00	4.85
2075	2141	1.933115	AATAGCGCGTGCAAAAGGGG	61.933	55.000	24.79	0.00	46.23	4.79
2076	2142	0.109319	AAATAGCGCGTGCAAAAGGG	60.109	50.000	24.79	0.00	46.23	3.95
2077	2143	1.648681	GAAAATAGCGCGTGCAAAAGG	59.351	47.619	24.79	0.00	46.23	3.11
2078	2144	2.584791	AGAAAATAGCGCGTGCAAAAG	58.415	42.857	24.79	0.00	46.23	2.27
2079	2145	2.697431	AGAAAATAGCGCGTGCAAAA	57.303	40.000	24.79	8.50	46.23	2.44
2080	2146	2.697431	AAGAAAATAGCGCGTGCAAA	57.303	40.000	24.79	11.32	46.23	3.68
2081	2147	2.697431	AAAGAAAATAGCGCGTGCAA	57.303	40.000	24.79	0.00	46.23	4.08
2082	2148	3.433957	TCTTAAAGAAAATAGCGCGTGCA	59.566	39.130	24.79	9.68	46.23	4.57
2083	2149	3.998522	TCTTAAAGAAAATAGCGCGTGC	58.001	40.909	14.39	14.39	43.24	5.34
2084	2150	6.846283	CCTTATCTTAAAGAAAATAGCGCGTG	59.154	38.462	8.43	0.00	0.00	5.34
2085	2151	6.759827	TCCTTATCTTAAAGAAAATAGCGCGT	59.240	34.615	8.43	0.00	0.00	6.01
2086	2152	7.173863	TCCTTATCTTAAAGAAAATAGCGCG	57.826	36.000	0.00	0.00	0.00	6.86
2087	2153	9.783256	TTTTCCTTATCTTAAAGAAAATAGCGC	57.217	29.630	0.00	0.00	0.00	5.92
2094	2160	9.738832	CCAAACGTTTTCCTTATCTTAAAGAAA	57.261	29.630	11.66	0.00	0.00	2.52
2095	2161	7.863877	GCCAAACGTTTTCCTTATCTTAAAGAA	59.136	33.333	11.66	0.00	0.00	2.52
2096	2162	7.013464	TGCCAAACGTTTTCCTTATCTTAAAGA	59.987	33.333	11.66	0.00	0.00	2.52
2097	2163	7.142680	TGCCAAACGTTTTCCTTATCTTAAAG	58.857	34.615	11.66	0.00	0.00	1.85
2098	2164	7.040473	TGCCAAACGTTTTCCTTATCTTAAA	57.960	32.000	11.66	0.00	0.00	1.52
2099	2165	6.636562	TGCCAAACGTTTTCCTTATCTTAA	57.363	33.333	11.66	0.00	0.00	1.85
2100	2166	6.657541	AGATGCCAAACGTTTTCCTTATCTTA	59.342	34.615	11.66	0.00	0.00	2.10
2101	2167	5.476945	AGATGCCAAACGTTTTCCTTATCTT	59.523	36.000	11.66	0.47	0.00	2.40
2102	2168	5.010282	AGATGCCAAACGTTTTCCTTATCT	58.990	37.500	11.66	12.62	0.00	1.98
2103	2169	5.310720	AGATGCCAAACGTTTTCCTTATC	57.689	39.130	11.66	10.74	0.00	1.75
2104	2170	5.708230	TGTAGATGCCAAACGTTTTCCTTAT	59.292	36.000	11.66	1.98	0.00	1.73
2105	2171	5.049267	GTGTAGATGCCAAACGTTTTCCTTA	60.049	40.000	11.66	0.00	0.00	2.69
2106	2172	3.886505	TGTAGATGCCAAACGTTTTCCTT	59.113	39.130	11.66	3.45	0.00	3.36
2107	2173	3.252458	GTGTAGATGCCAAACGTTTTCCT	59.748	43.478	11.66	6.70	0.00	3.36
2108	2174	3.561503	GTGTAGATGCCAAACGTTTTCC	58.438	45.455	11.66	5.78	0.00	3.13
2109	2175	3.223157	CGTGTAGATGCCAAACGTTTTC	58.777	45.455	11.66	6.57	0.00	2.29
2110	2176	2.603652	GCGTGTAGATGCCAAACGTTTT	60.604	45.455	11.66	0.00	36.65	2.43
2111	2177	1.069500	GCGTGTAGATGCCAAACGTTT	60.069	47.619	7.96	7.96	36.65	3.60
2112	2178	0.515564	GCGTGTAGATGCCAAACGTT	59.484	50.000	0.00	0.00	36.65	3.99
2113	2179	2.159181	GCGTGTAGATGCCAAACGT	58.841	52.632	0.00	0.00	36.65	3.99
2121	2187	3.709880	TTCGGCCGGCGTGTAGATG	62.710	63.158	27.83	2.27	0.00	2.90
2122	2188	3.454573	TTCGGCCGGCGTGTAGAT	61.455	61.111	27.83	0.00	0.00	1.98
2123	2189	4.424566	GTTCGGCCGGCGTGTAGA	62.425	66.667	27.83	11.60	0.00	2.59
2131	2197	4.084888	GTTGAAGCGTTCGGCCGG	62.085	66.667	27.83	10.87	45.17	6.13
2132	2198	4.084888	GGTTGAAGCGTTCGGCCG	62.085	66.667	22.12	22.12	45.17	6.13
2133	2199	4.084888	CGGTTGAAGCGTTCGGCC	62.085	66.667	8.81	0.00	45.17	6.13
2134	2200	4.736631	GCGGTTGAAGCGTTCGGC	62.737	66.667	18.30	0.00	41.74	5.54
2135	2201	3.041940	AGCGGTTGAAGCGTTCGG	61.042	61.111	18.30	0.00	41.74	4.30
2136	2202	2.101209	AACAGCGGTTGAAGCGTTCG	62.101	55.000	18.30	9.28	41.74	3.95
2137	2203	0.384353	GAACAGCGGTTGAAGCGTTC	60.384	55.000	18.30	10.29	41.74	3.95
2138	2204	0.814010	AGAACAGCGGTTGAAGCGTT	60.814	50.000	18.30	9.67	41.74	4.84
2139	2205	0.814010	AAGAACAGCGGTTGAAGCGT	60.814	50.000	18.30	2.50	41.74	5.07
2140	2206	0.110644	GAAGAACAGCGGTTGAAGCG	60.111	55.000	12.93	12.93	42.73	4.68
2141	2207	1.195674	GAGAAGAACAGCGGTTGAAGC	59.804	52.381	7.05	0.00	37.36	3.86
2142	2208	1.457303	CGAGAAGAACAGCGGTTGAAG	59.543	52.381	7.05	0.00	37.36	3.02
2143	2209	1.497991	CGAGAAGAACAGCGGTTGAA	58.502	50.000	7.05	0.00	37.36	2.69
2144	2210	0.944311	GCGAGAAGAACAGCGGTTGA	60.944	55.000	7.05	0.00	37.36	3.18
2145	2211	1.221466	TGCGAGAAGAACAGCGGTTG	61.221	55.000	7.05	0.00	37.36	3.77
2146	2212	0.320771	ATGCGAGAAGAACAGCGGTT	60.321	50.000	0.50	0.50	40.76	4.44
2147	2213	1.016130	CATGCGAGAAGAACAGCGGT	61.016	55.000	0.00	0.00	0.00	5.68
2148	2214	1.712081	CATGCGAGAAGAACAGCGG	59.288	57.895	0.00	0.00	0.00	5.52
2149	2215	1.059994	GCATGCGAGAAGAACAGCG	59.940	57.895	0.00	0.00	0.00	5.18
2150	2216	1.059994	CGCATGCGAGAAGAACAGC	59.940	57.895	35.82	0.00	42.83	4.40
2151	2217	0.792640	AACGCATGCGAGAAGAACAG	59.207	50.000	43.72	13.60	42.83	3.16
2152	2218	0.790207	GAACGCATGCGAGAAGAACA	59.210	50.000	43.72	0.00	42.83	3.18
2153	2219	0.246912	CGAACGCATGCGAGAAGAAC	60.247	55.000	43.72	22.99	42.83	3.01
2154	2220	0.666274	ACGAACGCATGCGAGAAGAA	60.666	50.000	43.72	0.00	42.83	2.52
2155	2221	0.169451	TACGAACGCATGCGAGAAGA	59.831	50.000	43.72	23.25	42.83	2.87
2156	2222	1.200483	ATACGAACGCATGCGAGAAG	58.800	50.000	43.72	30.34	42.83	2.85
2157	2223	1.586578	GAATACGAACGCATGCGAGAA	59.413	47.619	43.72	23.94	42.83	2.87
2158	2224	1.197055	GAATACGAACGCATGCGAGA	58.803	50.000	43.72	23.51	42.83	4.04
2159	2225	0.920664	TGAATACGAACGCATGCGAG	59.079	50.000	43.72	32.58	42.83	5.03
2160	2226	1.521006	GATGAATACGAACGCATGCGA	59.479	47.619	43.72	23.59	42.83	5.10
2161	2227	1.522676	AGATGAATACGAACGCATGCG	59.477	47.619	36.79	36.79	46.03	4.73
2162	2228	2.797156	AGAGATGAATACGAACGCATGC	59.203	45.455	7.91	7.91	0.00	4.06
2163	2229	5.395325	AAAGAGATGAATACGAACGCATG	57.605	39.130	0.00	0.00	0.00	4.06
2164	2230	5.006746	GGAAAAGAGATGAATACGAACGCAT	59.993	40.000	0.00	0.00	0.00	4.73
2165	2231	4.328983	GGAAAAGAGATGAATACGAACGCA	59.671	41.667	0.00	0.00	0.00	5.24
2166	2232	4.260253	GGGAAAAGAGATGAATACGAACGC	60.260	45.833	0.00	0.00	0.00	4.84
2167	2233	4.270325	GGGGAAAAGAGATGAATACGAACG	59.730	45.833	0.00	0.00	0.00	3.95
2168	2234	4.270325	CGGGGAAAAGAGATGAATACGAAC	59.730	45.833	0.00	0.00	0.00	3.95
2169	2235	4.160814	TCGGGGAAAAGAGATGAATACGAA	59.839	41.667	0.00	0.00	0.00	3.85
2170	2236	3.702548	TCGGGGAAAAGAGATGAATACGA	59.297	43.478	0.00	0.00	0.00	3.43
2171	2237	4.054780	TCGGGGAAAAGAGATGAATACG	57.945	45.455	0.00	0.00	0.00	3.06
2172	2238	5.859495	AGATCGGGGAAAAGAGATGAATAC	58.141	41.667	0.00	0.00	0.00	1.89
2173	2239	5.279006	CGAGATCGGGGAAAAGAGATGAATA	60.279	44.000	0.00	0.00	35.37	1.75
2174	2240	4.502259	CGAGATCGGGGAAAAGAGATGAAT	60.502	45.833	0.00	0.00	35.37	2.57
2175	2241	3.181475	CGAGATCGGGGAAAAGAGATGAA	60.181	47.826	0.00	0.00	35.37	2.57
2176	2242	2.362397	CGAGATCGGGGAAAAGAGATGA	59.638	50.000	0.00	0.00	35.37	2.92
2177	2243	2.748605	CGAGATCGGGGAAAAGAGATG	58.251	52.381	0.00	0.00	35.37	2.90
2178	2244	1.069358	GCGAGATCGGGGAAAAGAGAT	59.931	52.381	4.18	0.00	40.23	2.75
2179	2245	0.460311	GCGAGATCGGGGAAAAGAGA	59.540	55.000	4.18	0.00	40.23	3.10
2180	2246	0.872021	CGCGAGATCGGGGAAAAGAG	60.872	60.000	0.00	0.00	46.57	2.85
2181	2247	1.141019	CGCGAGATCGGGGAAAAGA	59.859	57.895	0.00	0.00	46.57	2.52
2182	2248	3.706140	CGCGAGATCGGGGAAAAG	58.294	61.111	0.00	0.00	46.57	2.27
2189	2255	4.498520	ACACCTGCGCGAGATCGG	62.499	66.667	12.10	3.96	40.23	4.18
2190	2256	2.943680	ATGACACCTGCGCGAGATCG	62.944	60.000	12.10	0.00	43.27	3.69
2191	2257	1.211818	GATGACACCTGCGCGAGATC	61.212	60.000	12.10	4.20	0.00	2.75
2192	2258	1.227089	GATGACACCTGCGCGAGAT	60.227	57.895	12.10	0.00	0.00	2.75
2193	2259	2.181777	GATGACACCTGCGCGAGA	59.818	61.111	12.10	0.00	0.00	4.04
2194	2260	3.250323	CGATGACACCTGCGCGAG	61.250	66.667	12.10	4.18	0.00	5.03
2195	2261	3.275832	TTCGATGACACCTGCGCGA	62.276	57.895	12.10	0.00	0.00	5.87
2196	2262	2.792290	CTTCGATGACACCTGCGCG	61.792	63.158	0.00	0.00	0.00	6.86
2197	2263	2.456119	CCTTCGATGACACCTGCGC	61.456	63.158	0.00	0.00	0.00	6.09
2198	2264	1.811266	CCCTTCGATGACACCTGCG	60.811	63.158	0.00	0.00	0.00	5.18
2199	2265	2.109126	GCCCTTCGATGACACCTGC	61.109	63.158	0.00	0.00	0.00	4.85
2200	2266	1.021390	GTGCCCTTCGATGACACCTG	61.021	60.000	11.12	0.00	0.00	4.00
2201	2267	1.296715	GTGCCCTTCGATGACACCT	59.703	57.895	11.12	0.00	0.00	4.00
2202	2268	2.100631	CGTGCCCTTCGATGACACC	61.101	63.158	14.48	3.26	0.00	4.16
2203	2269	1.078759	CTCGTGCCCTTCGATGACAC	61.079	60.000	11.80	11.80	36.73	3.67
2204	2270	1.215382	CTCGTGCCCTTCGATGACA	59.785	57.895	0.00	0.00	36.73	3.58
2205	2271	1.519455	CCTCGTGCCCTTCGATGAC	60.519	63.158	0.00	0.00	36.73	3.06
2206	2272	2.892640	CCTCGTGCCCTTCGATGA	59.107	61.111	0.00	0.00	36.73	2.92
2207	2273	2.892425	GCCTCGTGCCCTTCGATG	60.892	66.667	0.00	0.00	36.73	3.84
2208	2274	4.514577	CGCCTCGTGCCCTTCGAT	62.515	66.667	0.00	0.00	36.73	3.59
2211	2277	4.821589	CTCCGCCTCGTGCCCTTC	62.822	72.222	0.00	0.00	36.24	3.46
2224	2290	2.024871	CGACTAAGGCGAGCTCCG	59.975	66.667	8.47	4.62	42.21	4.63
2225	2291	2.413765	CCGACTAAGGCGAGCTCC	59.586	66.667	8.47	0.47	0.00	4.70
2233	2299	0.106894	GGGATTGAGGCCGACTAAGG	59.893	60.000	0.00	0.00	0.00	2.69
2234	2300	0.830648	TGGGATTGAGGCCGACTAAG	59.169	55.000	0.00	0.00	0.00	2.18
2235	2301	0.830648	CTGGGATTGAGGCCGACTAA	59.169	55.000	0.00	0.00	0.00	2.24
2236	2302	1.048724	CCTGGGATTGAGGCCGACTA	61.049	60.000	0.00	0.00	0.00	2.59
2237	2303	2.370445	CCTGGGATTGAGGCCGACT	61.370	63.158	0.00	0.00	0.00	4.18
2238	2304	2.190578	CCTGGGATTGAGGCCGAC	59.809	66.667	0.00	0.00	0.00	4.79
2243	2309	4.113815	TGGCGCCTGGGATTGAGG	62.114	66.667	29.70	0.00	0.00	3.86
2244	2310	2.515523	CTGGCGCCTGGGATTGAG	60.516	66.667	29.70	10.15	0.00	3.02
2245	2311	4.802051	GCTGGCGCCTGGGATTGA	62.802	66.667	31.28	7.07	0.00	2.57
2246	2312	4.809496	AGCTGGCGCCTGGGATTG	62.809	66.667	31.28	12.42	36.60	2.67
2247	2313	4.496336	GAGCTGGCGCCTGGGATT	62.496	66.667	31.28	10.45	36.60	3.01
2291	2357	3.106986	TAGGGAATGGAGCAGCCGC	62.107	63.158	0.00	0.00	40.66	6.53
2292	2358	1.227674	GTAGGGAATGGAGCAGCCG	60.228	63.158	0.00	0.00	40.66	5.52
2293	2359	1.149401	GGTAGGGAATGGAGCAGCC	59.851	63.158	0.00	0.00	37.10	4.85
2294	2360	1.227674	CGGTAGGGAATGGAGCAGC	60.228	63.158	0.00	0.00	0.00	5.25
2295	2361	1.227674	GCGGTAGGGAATGGAGCAG	60.228	63.158	0.00	0.00	0.00	4.24
2296	2362	2.908015	GCGGTAGGGAATGGAGCA	59.092	61.111	0.00	0.00	0.00	4.26
2297	2363	2.280186	CGCGGTAGGGAATGGAGC	60.280	66.667	0.00	0.00	0.00	4.70
2298	2364	2.280186	GCGCGGTAGGGAATGGAG	60.280	66.667	8.83	0.00	0.00	3.86
2299	2365	3.078196	TGCGCGGTAGGGAATGGA	61.078	61.111	8.83	0.00	0.00	3.41
2300	2366	2.588877	CTGCGCGGTAGGGAATGG	60.589	66.667	8.83	0.00	0.00	3.16
2301	2367	3.272334	GCTGCGCGGTAGGGAATG	61.272	66.667	19.23	0.00	0.00	2.67
2302	2368	4.547367	GGCTGCGCGGTAGGGAAT	62.547	66.667	19.23	0.00	0.00	3.01
2325	2391	3.308878	GATGTGTGACAACGCCGGC	62.309	63.158	19.07	19.07	35.87	6.13
2326	2392	1.667830	AGATGTGTGACAACGCCGG	60.668	57.895	0.00	0.00	35.87	6.13
2327	2393	1.492873	CAGATGTGTGACAACGCCG	59.507	57.895	0.00	0.00	35.87	6.46
2328	2394	1.207593	GCAGATGTGTGACAACGCC	59.792	57.895	0.00	0.00	35.87	5.68
2329	2395	0.164647	GAGCAGATGTGTGACAACGC	59.835	55.000	0.00	0.00	37.32	4.84
2330	2396	0.436150	CGAGCAGATGTGTGACAACG	59.564	55.000	0.00	0.00	0.00	4.10
2331	2397	0.792640	CCGAGCAGATGTGTGACAAC	59.207	55.000	0.00	0.00	0.00	3.32
2332	2398	0.678950	TCCGAGCAGATGTGTGACAA	59.321	50.000	0.00	0.00	0.00	3.18
2333	2399	0.244721	CTCCGAGCAGATGTGTGACA	59.755	55.000	0.00	0.00	0.00	3.58
2334	2400	1.080995	GCTCCGAGCAGATGTGTGAC	61.081	60.000	15.78	0.00	41.89	3.67
2335	2401	1.216444	GCTCCGAGCAGATGTGTGA	59.784	57.895	15.78	0.00	41.89	3.58
2336	2402	0.805322	GAGCTCCGAGCAGATGTGTG	60.805	60.000	22.29	0.00	45.56	3.82
2337	2403	1.515020	GAGCTCCGAGCAGATGTGT	59.485	57.895	22.29	0.00	45.56	3.72
2338	2404	1.588403	CGAGCTCCGAGCAGATGTG	60.588	63.158	22.29	1.70	45.56	3.21
2339	2405	2.804167	CGAGCTCCGAGCAGATGT	59.196	61.111	22.29	0.61	45.56	3.06
2340	2406	2.657944	GCGAGCTCCGAGCAGATG	60.658	66.667	22.29	9.53	45.56	2.90
2341	2407	3.910490	GGCGAGCTCCGAGCAGAT	61.910	66.667	22.29	1.41	45.56	2.90
2349	2415	4.593864	GGATCACCGGCGAGCTCC	62.594	72.222	9.30	7.48	0.00	4.70
2350	2416	2.136196	CTAGGATCACCGGCGAGCTC	62.136	65.000	9.30	2.73	41.83	4.09
2351	2417	2.123854	TAGGATCACCGGCGAGCT	60.124	61.111	9.30	0.00	41.83	4.09
2352	2418	1.170919	TACTAGGATCACCGGCGAGC	61.171	60.000	9.30	0.00	41.83	5.03
2353	2419	0.875728	CTACTAGGATCACCGGCGAG	59.124	60.000	9.30	0.06	41.83	5.03
2354	2420	1.170919	GCTACTAGGATCACCGGCGA	61.171	60.000	9.30	0.00	41.83	5.54
2355	2421	1.173444	AGCTACTAGGATCACCGGCG	61.173	60.000	0.00	0.00	41.83	6.46
2356	2422	0.315568	CAGCTACTAGGATCACCGGC	59.684	60.000	0.00	0.00	41.83	6.13
2357	2423	1.338337	CACAGCTACTAGGATCACCGG	59.662	57.143	0.00	0.00	41.83	5.28
2358	2424	2.025155	ACACAGCTACTAGGATCACCG	58.975	52.381	0.00	0.00	41.83	4.94
2359	2425	4.036971	CACTACACAGCTACTAGGATCACC	59.963	50.000	0.00	0.00	0.00	4.02
2360	2426	4.882427	TCACTACACAGCTACTAGGATCAC	59.118	45.833	0.00	0.00	0.00	3.06
2361	2427	4.882427	GTCACTACACAGCTACTAGGATCA	59.118	45.833	0.00	0.00	0.00	2.92
2362	2428	4.276431	GGTCACTACACAGCTACTAGGATC	59.724	50.000	0.00	0.00	0.00	3.36
2363	2429	4.208746	GGTCACTACACAGCTACTAGGAT	58.791	47.826	0.00	0.00	0.00	3.24
2364	2430	3.009805	TGGTCACTACACAGCTACTAGGA	59.990	47.826	0.00	0.00	0.00	2.94
2365	2431	3.128938	GTGGTCACTACACAGCTACTAGG	59.871	52.174	0.00	0.00	38.67	3.02
2366	2432	3.181509	CGTGGTCACTACACAGCTACTAG	60.182	52.174	0.00	0.00	38.74	2.57
2367	2433	2.745821	CGTGGTCACTACACAGCTACTA	59.254	50.000	0.00	0.00	38.74	1.82
2368	2434	1.540267	CGTGGTCACTACACAGCTACT	59.460	52.381	0.00	0.00	38.74	2.57
2369	2435	1.402456	CCGTGGTCACTACACAGCTAC	60.402	57.143	0.00	0.00	38.74	3.58
2370	2436	0.885879	CCGTGGTCACTACACAGCTA	59.114	55.000	0.00	0.00	38.74	3.32
2371	2437	1.113517	ACCGTGGTCACTACACAGCT	61.114	55.000	0.00	0.00	38.74	4.24
2372	2438	0.944311	CACCGTGGTCACTACACAGC	60.944	60.000	0.00	0.00	38.74	4.40
2373	2439	0.319555	CCACCGTGGTCACTACACAG	60.320	60.000	9.64	0.00	38.74	3.66
2374	2440	1.743391	CCACCGTGGTCACTACACA	59.257	57.895	9.64	0.00	38.74	3.72
2375	2441	1.666872	GCCACCGTGGTCACTACAC	60.667	63.158	18.95	0.00	40.46	2.90
2376	2442	2.738480	GCCACCGTGGTCACTACA	59.262	61.111	18.95	0.00	40.46	2.74
2377	2443	2.431942	CGCCACCGTGGTCACTAC	60.432	66.667	18.95	0.14	40.46	2.73
2378	2444	4.367023	GCGCCACCGTGGTCACTA	62.367	66.667	18.95	0.00	40.46	2.74
2408	2474	0.591170	GCACTCGCTGGTAGCAAAAA	59.409	50.000	0.00	0.00	42.58	1.94
2409	2475	2.244000	GCACTCGCTGGTAGCAAAA	58.756	52.632	0.00	0.00	42.58	2.44
2410	2476	3.966215	GCACTCGCTGGTAGCAAA	58.034	55.556	0.00	0.00	42.58	3.68

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.