AutoCloner

Multiple sequence alignment - TraesCS5B01G093700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G093700	chr5B	100.000	2927	0	0	1	2927	123015208	123012282	0.000000e+00	5406.0
1	TraesCS5B01G093700	chr5B	96.337	1283	32	12	1100	2371	123437576	123436298	0.000000e+00	2095.0
2	TraesCS5B01G093700	chr5B	96.259	1283	34	11	1100	2371	123219528	123218249	0.000000e+00	2091.0
3	TraesCS5B01G093700	chr5B	89.808	677	55	6	1100	1763	88340593	88341268	0.000000e+00	856.0
4	TraesCS5B01G093700	chr5B	93.368	573	31	5	2360	2927	123402562	123401992	0.000000e+00	841.0
5	TraesCS5B01G093700	chr5B	85.565	672	67	14	1100	1763	88211583	88212232	0.000000e+00	676.0
6	TraesCS5B01G093700	chr5B	93.705	413	17	6	2360	2767	123202028	123201620	6.940000e-171	610.0
7	TraesCS5B01G093700	chr5B	91.765	340	25	1	2591	2927	123201623	123201284	1.230000e-128	470.0
8	TraesCS5B01G093700	chr5B	81.370	365	47	12	2135	2486	701283828	701284184	7.990000e-71	278.0
9	TraesCS5B01G093700	chr5B	80.612	392	39	27	2103	2475	458385318	458385691	4.810000e-68	268.0
10	TraesCS5B01G093700	chr5B	96.689	151	5	0	949	1099	123022131	123021981	4.840000e-63	252.0
11	TraesCS5B01G093700	chr5B	95.364	151	7	0	949	1099	463913085	463912935	1.050000e-59	241.0
12	TraesCS5B01G093700	chr2B	94.700	566	30	0	242	807	625920888	625920323	0.000000e+00	880.0
13	TraesCS5B01G093700	chr2B	92.977	299	20	1	803	1100	625920281	625919983	4.480000e-118	435.0
14	TraesCS5B01G093700	chr2B	94.309	246	14	0	1	246	625921489	625921244	7.660000e-101	377.0
15	TraesCS5B01G093700	chr2B	85.830	247	33	2	1	246	761332946	761333191	8.050000e-66	261.0
16	TraesCS5B01G093700	chr2B	91.057	123	10	1	2599	2721	409331353	409331232	6.490000e-37	165.0
17	TraesCS5B01G093700	chr5A	90.269	668	60	4	1100	1763	74863508	74864174	0.000000e+00	869.0
18	TraesCS5B01G093700	chr5A	88.556	568	62	3	242	807	642658802	642658236	0.000000e+00	686.0
19	TraesCS5B01G093700	chr5A	77.995	409	63	17	2097	2486	362165040	362165440	6.310000e-57	231.0
20	TraesCS5B01G093700	chr5A	94.068	118	7	0	2598	2715	632159714	632159831	2.320000e-41	180.0
21	TraesCS5B01G093700	chr5A	78.696	230	33	10	2094	2312	26569184	26569408	3.930000e-29	139.0
22	TraesCS5B01G093700	chr5D	86.242	785	79	17	1100	1856	78504309	78505092	0.000000e+00	824.0
23	TraesCS5B01G093700	chr5D	86.033	673	80	9	1103	1763	78371306	78371976	0.000000e+00	710.0
24	TraesCS5B01G093700	chr5D	88.684	380	41	2	1385	1763	78602935	78603313	2.050000e-126	462.0
25	TraesCS5B01G093700	chr5D	91.497	294	25	0	1100	1393	78594864	78595157	3.510000e-109	405.0
26	TraesCS5B01G093700	chr4B	92.718	563	39	1	242	804	60055511	60056071	0.000000e+00	811.0
27	TraesCS5B01G093700	chr4B	90.820	305	25	3	796	1099	60056111	60056413	3.510000e-109	405.0
28	TraesCS5B01G093700	chr4B	91.870	246	20	0	1	246	60054910	60055155	7.770000e-91	344.0
29	TraesCS5B01G093700	chr4B	91.391	151	13	0	949	1099	60033470	60033620	1.060000e-49	207.0
30	TraesCS5B01G093700	chr4B	80.769	104	10	1	1343	1446	644837291	644837384	4.050000e-09	73.1
31	TraesCS5B01G093700	chr6D	90.426	564	52	2	242	804	24437440	24438002	0.000000e+00	741.0
32	TraesCS5B01G093700	chr6D	84.337	249	33	6	1	246	433610130	433610375	3.770000e-59	239.0
33	TraesCS5B01G093700	chr6D	92.562	121	9	0	2595	2715	287455139	287455259	1.080000e-39	174.0
34	TraesCS5B01G093700	chr4A	89.381	565	54	6	242	804	702969328	702969888	0.000000e+00	706.0
35	TraesCS5B01G093700	chr4A	89.204	565	55	6	242	804	703034590	703035150	0.000000e+00	701.0
36	TraesCS5B01G093700	chr4A	84.615	247	36	2	1	246	702968745	702968990	8.100000e-61	244.0
37	TraesCS5B01G093700	chr4A	84.549	233	34	2	15	246	703034021	703034252	2.270000e-56	230.0
38	TraesCS5B01G093700	chr7D	88.713	567	62	2	242	807	46414330	46413765	0.000000e+00	691.0
39	TraesCS5B01G093700	chr7D	88.211	246	28	1	1	246	599933014	599933258	2.850000e-75	292.0
40	TraesCS5B01G093700	chr7D	87.449	247	29	2	1	246	46414922	46414677	1.720000e-72	283.0
41	TraesCS5B01G093700	chr7D	77.179	390	61	18	2097	2483	563334326	563334690	4.950000e-48	202.0
42	TraesCS5B01G093700	chr7D	94.872	117	6	0	2599	2715	32015240	32015124	1.790000e-42	183.0
43	TraesCS5B01G093700	chr1A	88.204	568	64	3	242	808	535711436	535710871	0.000000e+00	675.0
44	TraesCS5B01G093700	chr7A	87.986	566	67	1	242	807	680580829	680580265	0.000000e+00	667.0
45	TraesCS5B01G093700	chr7B	81.081	407	51	16	2096	2486	491122854	491123250	4.740000e-78	302.0
46	TraesCS5B01G093700	chr7B	79.592	343	49	16	2097	2425	187779213	187779548	2.940000e-55	226.0
47	TraesCS5B01G093700	chr7B	89.516	124	13	0	2596	2719	88565839	88565716	1.090000e-34	158.0
48	TraesCS5B01G093700	chr3D	80.893	403	52	14	2097	2486	517012054	517011664	7.930000e-76	294.0
49	TraesCS5B01G093700	chr3B	79.064	406	57	17	2097	2486	680220070	680220463	1.350000e-63	254.0
50	TraesCS5B01G093700	chr2A	83.665	251	31	6	1	246	1290572	1290817	8.160000e-56	228.0
51	TraesCS5B01G093700	chr1B	91.667	120	10	0	2596	2715	325262215	325262096	1.800000e-37	167.0
52	TraesCS5B01G093700	chr1B	80.870	230	27	13	2097	2312	655808239	655808013	6.490000e-37	165.0
53	TraesCS5B01G093700	chr6B	80.000	105	11	4	1342	1446	671658525	671658619	5.230000e-08	69.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G093700	chr5B	123012282	123015208	2926	True	5406.0	5406	100.000000	1	2927	1	chr5B.!!$R1	2926
1	TraesCS5B01G093700	chr5B	123436298	123437576	1278	True	2095.0	2095	96.337000	1100	2371	1	chr5B.!!$R5	1271
2	TraesCS5B01G093700	chr5B	123218249	123219528	1279	True	2091.0	2091	96.259000	1100	2371	1	chr5B.!!$R3	1271
3	TraesCS5B01G093700	chr5B	88340593	88341268	675	False	856.0	856	89.808000	1100	1763	1	chr5B.!!$F2	663
4	TraesCS5B01G093700	chr5B	123401992	123402562	570	True	841.0	841	93.368000	2360	2927	1	chr5B.!!$R4	567
5	TraesCS5B01G093700	chr5B	88211583	88212232	649	False	676.0	676	85.565000	1100	1763	1	chr5B.!!$F1	663
6	TraesCS5B01G093700	chr5B	123201284	123202028	744	True	540.0	610	92.735000	2360	2927	2	chr5B.!!$R7	567
7	TraesCS5B01G093700	chr2B	625919983	625921489	1506	True	564.0	880	93.995333	1	1100	3	chr2B.!!$R2	1099
8	TraesCS5B01G093700	chr5A	74863508	74864174	666	False	869.0	869	90.269000	1100	1763	1	chr5A.!!$F2	663
9	TraesCS5B01G093700	chr5A	642658236	642658802	566	True	686.0	686	88.556000	242	807	1	chr5A.!!$R1	565
10	TraesCS5B01G093700	chr5D	78504309	78505092	783	False	824.0	824	86.242000	1100	1856	1	chr5D.!!$F2	756
11	TraesCS5B01G093700	chr5D	78371306	78371976	670	False	710.0	710	86.033000	1103	1763	1	chr5D.!!$F1	660
12	TraesCS5B01G093700	chr4B	60054910	60056413	1503	False	520.0	811	91.802667	1	1099	3	chr4B.!!$F3	1098
13	TraesCS5B01G093700	chr6D	24437440	24438002	562	False	741.0	741	90.426000	242	804	1	chr6D.!!$F1	562
14	TraesCS5B01G093700	chr4A	702968745	702969888	1143	False	475.0	706	86.998000	1	804	2	chr4A.!!$F1	803
15	TraesCS5B01G093700	chr4A	703034021	703035150	1129	False	465.5	701	86.876500	15	804	2	chr4A.!!$F2	789
16	TraesCS5B01G093700	chr7D	46413765	46414922	1157	True	487.0	691	88.081000	1	807	2	chr7D.!!$R2	806
17	TraesCS5B01G093700	chr1A	535710871	535711436	565	True	675.0	675	88.204000	242	808	1	chr1A.!!$R1	566
18	TraesCS5B01G093700	chr7A	680580265	680580829	564	True	667.0	667	87.986000	242	807	1	chr7A.!!$R1	565

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
418	790	0.248702	GACGGAGAGATCGCCTTGTC	60.249	60.0	1.05	0.0	33.34	3.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2079	2541	0.826715	TCCGGCATCTTCCTCTCTTG	59.173	55.0	0.0	0.0	0.0	3.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
107	108	2.203252	CTCCCATGATGGTGGCGG	60.203	66.667	11.09	0.00	37.96	6.13
108	109	3.014538	TCCCATGATGGTGGCGGT	61.015	61.111	11.09	0.00	37.96	5.68
229	230	2.746375	GGCACCCATCCAGGTCGAT	61.746	63.158	0.00	0.00	38.39	3.59
274	644	3.873883	GATCGCCGAGGACGACGT	61.874	66.667	0.00	0.00	44.74	4.34
288	658	1.153823	GACGTGGATGGTGTCGAGG	60.154	63.158	0.00	0.00	0.00	4.63
418	790	0.248702	GACGGAGAGATCGCCTTGTC	60.249	60.000	1.05	0.00	33.34	3.18
456	829	1.089920	GATTGAGCACCATGAAGCGT	58.910	50.000	0.00	0.00	35.48	5.07
627	1000	2.154074	GTTGGGTGGAGGAGGGTGT	61.154	63.158	0.00	0.00	0.00	4.16
927	1347	2.202932	CCATGGCGACGAAGAGGG	60.203	66.667	0.00	0.00	0.00	4.30
951	1371	6.131961	GGGACCTAGTAACTGATACCAAGTA	58.868	44.000	0.00	0.00	34.89	2.24
973	1393	5.612725	AGGAGAATCAATTCACTCTCTCC	57.387	43.478	7.68	7.68	46.22	3.71
974	1394	4.367450	GGAGAATCAATTCACTCTCTCCG	58.633	47.826	5.59	0.00	39.57	4.63
977	1397	6.405953	GGAGAATCAATTCACTCTCTCCGTTA	60.406	42.308	5.59	0.00	39.57	3.18
980	1400	7.493971	AGAATCAATTCACTCTCTCCGTTAATG	59.506	37.037	5.59	0.00	39.23	1.90
984	1404	8.474831	TCAATTCACTCTCTCCGTTAATGATTA	58.525	33.333	0.00	0.00	0.00	1.75
1057	1477	0.533032	GCAGGCCCTCGATCCTATAC	59.467	60.000	0.00	0.00	0.00	1.47
1071	1491	1.543208	CCTATACACGTGGGCATGCAT	60.543	52.381	21.36	3.98	0.00	3.96
1076	1496	0.525311	CACGTGGGCATGCATAACAA	59.475	50.000	21.36	0.00	0.00	2.83
1175	1595	3.823330	GATCTCCGGTGGTCGCGT	61.823	66.667	5.77	0.00	37.59	6.01
1456	1902	2.930826	ATCGCCTTCCACGGATTATT	57.069	45.000	0.00	0.00	0.00	1.40
1546	1992	3.233980	CTGCATCGGGGATCGGGA	61.234	66.667	0.00	0.00	39.77	5.14
1773	2221	2.830772	TGCATAGTCGCTGCAATTTC	57.169	45.000	0.00	0.00	46.06	2.17
1782	2230	1.679680	CGCTGCAATTTCCCATCATCT	59.320	47.619	0.00	0.00	0.00	2.90
1854	2316	5.491982	AGTCTCCGCTGAAATAGAATGTTT	58.508	37.500	0.00	0.00	0.00	2.83
2003	2465	1.024271	TGACACAAAGCAGCAGGAAC	58.976	50.000	0.00	0.00	0.00	3.62
2005	2467	1.002033	GACACAAAGCAGCAGGAACAG	60.002	52.381	0.00	0.00	0.00	3.16
2033	2495	3.107402	ACTTCTAGATCACAGAGCCCA	57.893	47.619	0.00	0.00	0.00	5.36
2038	2500	0.252479	AGATCACAGAGCCCAGCAAG	59.748	55.000	0.00	0.00	0.00	4.01
2079	2541	6.174049	GGGAGATATAGCTAAACATGGAACC	58.826	44.000	0.00	0.00	0.00	3.62
2118	2580	3.621558	GAGGGGAACTTTTGGTCTATGG	58.378	50.000	0.00	0.00	36.15	2.74
2121	2583	3.089284	GGGAACTTTTGGTCTATGGGTG	58.911	50.000	0.00	0.00	36.15	4.61
2282	2752	5.121768	AGACAACAAATTCGGTCGAAATAGG	59.878	40.000	9.88	3.53	37.69	2.57
2288	2758	2.660189	TCGGTCGAAATAGGGTGAAC	57.340	50.000	0.00	0.00	0.00	3.18
2292	2762	3.000727	GGTCGAAATAGGGTGAACAGTG	58.999	50.000	0.00	0.00	0.00	3.66
2300	2770	7.762615	CGAAATAGGGTGAACAGTGAACTATAA	59.237	37.037	0.00	0.00	0.00	0.98
2334	2805	3.593442	AATTGGACCCTGAAGTGAACA	57.407	42.857	0.00	0.00	0.00	3.18
2337	2808	2.684943	TGGACCCTGAAGTGAACACTA	58.315	47.619	7.90	0.00	41.58	2.74
2586	3059	3.180891	GGATTAAAGAGTCCCTCCACG	57.819	52.381	0.00	0.00	0.00	4.94
2596	3244	2.838202	AGTCCCTCCACGTTGATGTTAT	59.162	45.455	0.00	0.00	0.00	1.89
2610	3258	6.388278	GTTGATGTTATATACTCCCTCCGTC	58.612	44.000	0.00	0.00	0.00	4.79
2612	3260	4.458256	TGTTATATACTCCCTCCGTCCA	57.542	45.455	0.00	0.00	0.00	4.02
2625	3273	3.179830	CTCCGTCCAGAATTACTTGTCG	58.820	50.000	0.00	0.00	0.00	4.35
2669	3317	7.868415	GGATGTATCTAGAACTAAAATGCGTCT	59.132	37.037	0.00	0.00	0.00	4.18
2699	3347	8.816640	ACATCCATTTTTATGACAAGTGTTTC	57.183	30.769	0.00	0.00	0.00	2.78
2745	3393	3.566210	ACCAACTCCACCCCACGG	61.566	66.667	0.00	0.00	0.00	4.94
2759	3410	1.405121	CCCACGGACAACTAGGCTAAC	60.405	57.143	0.00	0.00	0.00	2.34
2763	3414	4.171754	CACGGACAACTAGGCTAACTAAC	58.828	47.826	0.00	0.00	0.00	2.34
2788	3439	4.037089	GTCCTAGCCTACTCTGCTAACTTC	59.963	50.000	0.00	0.00	40.58	3.01
2815	3466	3.746045	AAGTGCTAACGTCTTCCTTGA	57.254	42.857	0.00	0.00	0.00	3.02
2841	3492	1.666553	CGCTTGCTTCCACGGTGTA	60.667	57.895	7.45	0.00	0.00	2.90
2871	3522	5.470098	GGCCAGTATGTTGAGTATAATGTGG	59.530	44.000	0.00	0.00	0.00	4.17
2890	3541	4.162592	TCATGGAATGGGATGCGC	57.837	55.556	0.00	0.00	46.73	6.09
2892	3543	1.829096	CATGGAATGGGATGCGCCA	60.829	57.895	4.18	0.00	41.79	5.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	2.796483	AATGCCGCCTACAGCAACGA	62.796	55.000	0.00	0.00	43.36	3.85
72	73	0.322816	AGCACCTCGCCATGTTGAAT	60.323	50.000	0.00	0.00	44.04	2.57
107	108	1.677942	CTCCTCGTACTACCCTCCAC	58.322	60.000	0.00	0.00	0.00	4.02
108	109	0.549950	CCTCCTCGTACTACCCTCCA	59.450	60.000	0.00	0.00	0.00	3.86
143	144	0.324923	TGCCTACCCGATGTACCACT	60.325	55.000	0.00	0.00	0.00	4.00
144	145	0.756903	ATGCCTACCCGATGTACCAC	59.243	55.000	0.00	0.00	0.00	4.16
229	230	4.478371	CATGCCGCTCCCTCTGCA	62.478	66.667	0.00	0.00	38.23	4.41
274	644	4.451150	GCGCCTCGACACCATCCA	62.451	66.667	0.00	0.00	0.00	3.41
333	703	0.802222	ACATCGATCACGCCGTCAAG	60.802	55.000	0.00	0.00	39.58	3.02
418	790	1.333931	TCGCTAGTACCGCAATCTGAG	59.666	52.381	5.71	0.00	0.00	3.35
627	1000	1.671850	GGCGTCACTTTCCTCATCGAA	60.672	52.381	0.00	0.00	0.00	3.71
660	1033	2.682155	AATCCTTCTTCCTGCTCGTC	57.318	50.000	0.00	0.00	0.00	4.20
787	1160	2.003830	TCCTCTCTTCTCCTCCTCCAA	58.996	52.381	0.00	0.00	0.00	3.53
927	1347	4.961099	ACTTGGTATCAGTTACTAGGTCCC	59.039	45.833	0.00	0.00	27.21	4.46
934	1354	7.839705	TGATTCTCCTACTTGGTATCAGTTACT	59.160	37.037	0.00	0.00	37.07	2.24
951	1371	4.099266	CGGAGAGAGTGAATTGATTCTCCT	59.901	45.833	12.65	2.46	45.37	3.69
996	1416	6.239289	GCAATGCCCTGTGTATAAATACCATT	60.239	38.462	0.00	0.00	32.33	3.16
1057	1477	0.525311	TTGTTATGCATGCCCACGTG	59.475	50.000	16.68	9.08	35.78	4.49
1071	1491	5.886474	TGAGTTGTGTTGTAATGGGTTGTTA	59.114	36.000	0.00	0.00	0.00	2.41
1076	1496	4.274147	TGTTGAGTTGTGTTGTAATGGGT	58.726	39.130	0.00	0.00	0.00	4.51
1175	1595	1.447140	GCCAATGTCGTAGCCGTGA	60.447	57.895	0.00	0.00	35.01	4.35
1546	1992	7.660030	AAATTGGATTTACCGAGGATGAAAT	57.340	32.000	0.00	0.00	42.61	2.17
2003	2465	7.318893	TCTGTGATCTAGAAGTTGATTCACTG	58.681	38.462	17.05	16.31	40.67	3.66
2005	2467	6.255453	GCTCTGTGATCTAGAAGTTGATTCAC	59.745	42.308	11.70	11.70	40.67	3.18
2038	2500	5.138125	TCTCCCATGATTTGCAAGTTTTC	57.862	39.130	0.00	0.00	0.00	2.29
2079	2541	0.826715	TCCGGCATCTTCCTCTCTTG	59.173	55.000	0.00	0.00	0.00	3.02
2100	2562	3.089284	CACCCATAGACCAAAAGTTCCC	58.911	50.000	0.00	0.00	0.00	3.97
2264	2734	3.936453	TCACCCTATTTCGACCGAATTTG	59.064	43.478	5.65	4.08	33.79	2.32
2282	2752	7.843490	TTGCTATTATAGTTCACTGTTCACC	57.157	36.000	0.94	0.00	0.00	4.02
2320	2791	4.772886	AAACTAGTGTTCACTTCAGGGT	57.227	40.909	10.74	1.44	34.96	4.34
2480	2953	6.546484	AGAAATCAAGACATCTTCTGGGAAA	58.454	36.000	0.00	0.00	33.46	3.13
2519	2992	4.453478	ACGTACACTCGTGAGTATTTGAGA	59.547	41.667	1.54	0.00	42.56	3.27
2586	3059	6.342338	ACGGAGGGAGTATATAACATCAAC	57.658	41.667	0.00	0.00	0.00	3.18
2596	3244	3.897657	ATTCTGGACGGAGGGAGTATA	57.102	47.619	0.00	0.00	0.00	1.47
2610	3258	5.122239	TCATTTCTGCGACAAGTAATTCTGG	59.878	40.000	0.00	0.00	0.00	3.86
2612	3260	6.801539	TTCATTTCTGCGACAAGTAATTCT	57.198	33.333	0.00	0.00	0.00	2.40
2625	3273	9.455847	GATACATCCACTTTTATTCATTTCTGC	57.544	33.333	0.00	0.00	0.00	4.26
2695	3343	0.883833	TACTCACTCCGTCCGGAAAC	59.116	55.000	5.23	0.00	44.66	2.78
2699	3347	2.019249	TGTAATACTCACTCCGTCCGG	58.981	52.381	0.00	0.00	0.00	5.14
2709	3357	6.995686	AGTTGGTGTTCATGTTGTAATACTCA	59.004	34.615	0.00	0.00	0.00	3.41
2710	3358	7.360946	GGAGTTGGTGTTCATGTTGTAATACTC	60.361	40.741	0.00	0.00	0.00	2.59
2745	3393	5.185442	AGGACAGTTAGTTAGCCTAGTTGTC	59.815	44.000	0.00	0.00	38.64	3.18
2759	3410	3.316868	GCAGAGTAGGCTAGGACAGTTAG	59.683	52.174	0.00	0.00	0.00	2.34
2763	3414	2.065899	AGCAGAGTAGGCTAGGACAG	57.934	55.000	0.00	0.00	40.47	3.51
2788	3439	4.319549	GGAAGACGTTAGCACTTTCTTTGG	60.320	45.833	0.00	0.00	0.00	3.28
2841	3492	0.907704	TCAACATACTGGCCGAGGGT	60.908	55.000	0.00	0.00	0.00	4.34
2871	3522	1.954528	CGCATCCCATTCCATGAGC	59.045	57.895	0.00	0.00	0.00	4.26
2890	3541	2.417239	GCAATGCCATTGTGTTTGATGG	59.583	45.455	18.10	0.00	44.52	3.51
2892	3543	2.339418	CGCAATGCCATTGTGTTTGAT	58.661	42.857	20.19	0.00	43.75	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.