Multiple sequence alignment - TraesCS5B01G093400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G093400 chr5B 100.000 2627 0 0 1 2627 122451707 122449081 0.000000e+00 4852.0
1 TraesCS5B01G093400 chr5B 97.466 592 15 0 2036 2627 3892275 3891684 0.000000e+00 1011.0
2 TraesCS5B01G093400 chr5A 99.144 818 6 1 858 1675 536711398 536710582 0.000000e+00 1471.0
3 TraesCS5B01G093400 chr5A 95.479 553 19 4 2032 2580 565702581 565702031 0.000000e+00 878.0
4 TraesCS5B01G093400 chr5A 86.352 806 56 21 84 872 116805434 116804666 0.000000e+00 830.0
5 TraesCS5B01G093400 chr5A 80.710 648 79 29 251 872 116592006 116591379 1.840000e-126 462.0
6 TraesCS5B01G093400 chr5A 88.556 367 28 7 1674 2032 116804673 116804313 1.440000e-117 433.0
7 TraesCS5B01G093400 chr5A 78.571 168 26 9 1831 1994 460475063 460474902 4.630000e-18 102.0
8 TraesCS5B01G093400 chr5A 95.652 46 2 0 2582 2627 13094398 13094353 1.010000e-09 75.0
9 TraesCS5B01G093400 chr1B 99.144 818 6 1 858 1675 669919051 669919867 0.000000e+00 1471.0
10 TraesCS5B01G093400 chr1B 98.901 819 6 2 858 1676 418166368 418165553 0.000000e+00 1459.0
11 TraesCS5B01G093400 chr1B 100.000 79 0 0 1597 1675 662634162 662634240 2.110000e-31 147.0
12 TraesCS5B01G093400 chr3B 99.022 818 7 1 858 1675 773547870 773548686 0.000000e+00 1465.0
13 TraesCS5B01G093400 chr3B 97.148 596 17 0 2032 2627 560870035 560870630 0.000000e+00 1007.0
14 TraesCS5B01G093400 chr3B 94.290 613 16 4 2032 2627 19978729 19979339 0.000000e+00 920.0
15 TraesCS5B01G093400 chr2A 99.022 818 7 1 858 1675 3582229 3581413 0.000000e+00 1465.0
16 TraesCS5B01G093400 chr2A 96.699 818 25 2 858 1675 40956712 40955897 0.000000e+00 1360.0
17 TraesCS5B01G093400 chr7A 98.415 820 10 2 858 1675 30715324 30714506 0.000000e+00 1439.0
18 TraesCS5B01G093400 chr7A 93.950 562 17 5 2034 2580 452752853 452753412 0.000000e+00 833.0
19 TraesCS5B01G093400 chr7A 79.253 241 37 10 1793 2027 112709722 112709955 3.500000e-34 156.0
20 TraesCS5B01G093400 chr4A 98.166 818 14 1 858 1675 175414200 175413384 0.000000e+00 1426.0
21 TraesCS5B01G093400 chr7B 97.570 823 16 2 858 1677 63493943 63494764 0.000000e+00 1406.0
22 TraesCS5B01G093400 chr7B 78.082 219 31 11 1789 2007 90193901 90193700 3.550000e-24 122.0
23 TraesCS5B01G093400 chr2B 98.487 595 7 2 2034 2627 637789230 637788637 0.000000e+00 1048.0
24 TraesCS5B01G093400 chr2B 76.080 301 46 15 1747 2032 668011174 668011463 1.640000e-27 134.0
25 TraesCS5B01G093400 chr2B 79.518 166 25 6 1832 1997 30579140 30579296 2.760000e-20 110.0
26 TraesCS5B01G093400 chr2B 84.746 59 9 0 600 658 134306370 134306312 2.820000e-05 60.2
27 TraesCS5B01G093400 chr6B 96.990 598 18 0 2030 2627 580247372 580246775 0.000000e+00 1005.0
28 TraesCS5B01G093400 chr6B 96.661 599 16 2 2032 2627 214034007 214033410 0.000000e+00 992.0
29 TraesCS5B01G093400 chr4B 93.538 619 24 7 2024 2627 601418499 601417882 0.000000e+00 907.0
30 TraesCS5B01G093400 chr1A 93.972 564 18 4 2031 2580 588945716 588946277 0.000000e+00 839.0
31 TraesCS5B01G093400 chr1A 95.652 46 2 0 2582 2627 588946333 588946378 1.010000e-09 75.0
32 TraesCS5B01G093400 chr5D 80.735 898 103 44 1 872 110325715 110326568 1.030000e-178 636.0
33 TraesCS5B01G093400 chr5D 87.500 288 26 6 1744 2027 110326625 110326906 9.070000e-85 324.0
34 TraesCS5B01G093400 chr5D 84.848 231 22 8 1810 2032 110353889 110354114 1.220000e-53 220.0
35 TraesCS5B01G093400 chr5D 80.000 220 34 8 1743 1959 411706933 411707145 1.260000e-33 154.0
36 TraesCS5B01G093400 chr7D 77.559 254 43 9 1764 2014 107380842 107381084 9.800000e-30 141.0
37 TraesCS5B01G093400 chr7D 79.861 144 17 6 1820 1959 42937774 42937639 7.740000e-16 95.3
38 TraesCS5B01G093400 chr4D 87.671 73 7 2 600 671 500502448 500502519 1.680000e-12 84.2
39 TraesCS5B01G093400 chr4D 86.885 61 6 2 600 658 43672586 43672646 1.690000e-07 67.6
40 TraesCS5B01G093400 chr2D 90.323 62 4 2 600 659 412283897 412283836 2.170000e-11 80.5
41 TraesCS5B01G093400 chr3A 88.710 62 5 2 601 661 724019494 724019554 1.010000e-09 75.0
42 TraesCS5B01G093400 chr3D 86.885 61 6 2 600 659 90777878 90777819 1.690000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G093400 chr5B 122449081 122451707 2626 True 4852.0 4852 100.0000 1 2627 1 chr5B.!!$R2 2626
1 TraesCS5B01G093400 chr5B 3891684 3892275 591 True 1011.0 1011 97.4660 2036 2627 1 chr5B.!!$R1 591
2 TraesCS5B01G093400 chr5A 536710582 536711398 816 True 1471.0 1471 99.1440 858 1675 1 chr5A.!!$R4 817
3 TraesCS5B01G093400 chr5A 565702031 565702581 550 True 878.0 878 95.4790 2032 2580 1 chr5A.!!$R5 548
4 TraesCS5B01G093400 chr5A 116804313 116805434 1121 True 631.5 830 87.4540 84 2032 2 chr5A.!!$R6 1948
5 TraesCS5B01G093400 chr5A 116591379 116592006 627 True 462.0 462 80.7100 251 872 1 chr5A.!!$R2 621
6 TraesCS5B01G093400 chr1B 669919051 669919867 816 False 1471.0 1471 99.1440 858 1675 1 chr1B.!!$F2 817
7 TraesCS5B01G093400 chr1B 418165553 418166368 815 True 1459.0 1459 98.9010 858 1676 1 chr1B.!!$R1 818
8 TraesCS5B01G093400 chr3B 773547870 773548686 816 False 1465.0 1465 99.0220 858 1675 1 chr3B.!!$F3 817
9 TraesCS5B01G093400 chr3B 560870035 560870630 595 False 1007.0 1007 97.1480 2032 2627 1 chr3B.!!$F2 595
10 TraesCS5B01G093400 chr3B 19978729 19979339 610 False 920.0 920 94.2900 2032 2627 1 chr3B.!!$F1 595
11 TraesCS5B01G093400 chr2A 3581413 3582229 816 True 1465.0 1465 99.0220 858 1675 1 chr2A.!!$R1 817
12 TraesCS5B01G093400 chr2A 40955897 40956712 815 True 1360.0 1360 96.6990 858 1675 1 chr2A.!!$R2 817
13 TraesCS5B01G093400 chr7A 30714506 30715324 818 True 1439.0 1439 98.4150 858 1675 1 chr7A.!!$R1 817
14 TraesCS5B01G093400 chr7A 452752853 452753412 559 False 833.0 833 93.9500 2034 2580 1 chr7A.!!$F2 546
15 TraesCS5B01G093400 chr4A 175413384 175414200 816 True 1426.0 1426 98.1660 858 1675 1 chr4A.!!$R1 817
16 TraesCS5B01G093400 chr7B 63493943 63494764 821 False 1406.0 1406 97.5700 858 1677 1 chr7B.!!$F1 819
17 TraesCS5B01G093400 chr2B 637788637 637789230 593 True 1048.0 1048 98.4870 2034 2627 1 chr2B.!!$R2 593
18 TraesCS5B01G093400 chr6B 580246775 580247372 597 True 1005.0 1005 96.9900 2030 2627 1 chr6B.!!$R2 597
19 TraesCS5B01G093400 chr6B 214033410 214034007 597 True 992.0 992 96.6610 2032 2627 1 chr6B.!!$R1 595
20 TraesCS5B01G093400 chr4B 601417882 601418499 617 True 907.0 907 93.5380 2024 2627 1 chr4B.!!$R1 603
21 TraesCS5B01G093400 chr1A 588945716 588946378 662 False 457.0 839 94.8120 2031 2627 2 chr1A.!!$F1 596
22 TraesCS5B01G093400 chr5D 110325715 110326906 1191 False 480.0 636 84.1175 1 2027 2 chr5D.!!$F3 2026

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
798 803 0.112412 CCTTTGCAAGGGGTACACCT 59.888 55.0 19.57 12.16 45.27 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1690 2823 1.377229 CAAACTGGGGGTTCGGCTA 59.623 57.895 0.0 0.0 37.12 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.506538 ACATATGAAGTAGAGGGAAGCAAT 57.493 37.500 10.38 0.00 0.00 3.56
31 36 4.540502 AGTAGAGGGAAGCAATTAAAGGGT 59.459 41.667 0.00 0.00 0.00 4.34
81 86 3.503363 GAGGACGCACATGCAGCC 61.503 66.667 4.49 4.38 42.21 4.85
82 87 4.334118 AGGACGCACATGCAGCCA 62.334 61.111 12.79 0.00 42.21 4.75
127 132 0.465460 ATGTGTTGCACGTTGGACCT 60.465 50.000 0.00 0.00 37.14 3.85
130 135 1.355210 GTTGCACGTTGGACCTGTG 59.645 57.895 7.47 7.47 36.70 3.66
140 145 1.059098 TGGACCTGTGAGAGCATGTT 58.941 50.000 0.00 0.00 0.00 2.71
167 172 3.686726 TGTTTTCCACACACATTTTTGGC 59.313 39.130 0.00 0.00 0.00 4.52
185 190 6.616774 TTTGGCTTTTAGGATTTTGCTTTG 57.383 33.333 0.00 0.00 0.00 2.77
193 198 6.493189 TTAGGATTTTGCTTTGGTTTTCCT 57.507 33.333 0.00 0.00 41.38 3.36
302 307 3.488678 TGCAAAACACAATGTGCATTACG 59.511 39.130 14.01 5.59 41.85 3.18
303 308 3.489047 GCAAAACACAATGTGCATTACGT 59.511 39.130 14.01 0.00 36.98 3.57
304 309 4.605793 GCAAAACACAATGTGCATTACGTG 60.606 41.667 14.01 11.42 36.98 4.49
305 310 4.560136 AAACACAATGTGCATTACGTGA 57.440 36.364 14.01 0.00 36.98 4.35
306 311 4.560136 AACACAATGTGCATTACGTGAA 57.440 36.364 14.01 0.00 36.98 3.18
307 312 4.145876 ACACAATGTGCATTACGTGAAG 57.854 40.909 14.01 0.00 36.98 3.02
308 313 2.910482 CACAATGTGCATTACGTGAAGC 59.090 45.455 0.00 0.00 30.64 3.86
309 314 2.551887 ACAATGTGCATTACGTGAAGCA 59.448 40.909 6.11 6.11 34.10 3.91
313 318 2.679355 TGCATTACGTGAAGCACAAC 57.321 45.000 6.11 0.00 33.40 3.32
314 319 1.943340 TGCATTACGTGAAGCACAACA 59.057 42.857 6.11 0.00 33.40 3.33
334 339 4.960938 ACATGTGCTTACTGAAGAGTGAA 58.039 39.130 0.00 0.00 34.25 3.18
335 340 5.368145 ACATGTGCTTACTGAAGAGTGAAA 58.632 37.500 0.00 0.00 34.25 2.69
336 341 5.822519 ACATGTGCTTACTGAAGAGTGAAAA 59.177 36.000 0.00 0.00 34.25 2.29
337 342 5.991328 TGTGCTTACTGAAGAGTGAAAAG 57.009 39.130 0.00 0.00 34.25 2.27
338 343 4.273480 TGTGCTTACTGAAGAGTGAAAAGC 59.727 41.667 0.00 0.00 39.94 3.51
339 344 4.273480 GTGCTTACTGAAGAGTGAAAAGCA 59.727 41.667 6.74 6.74 43.95 3.91
340 345 4.273480 TGCTTACTGAAGAGTGAAAAGCAC 59.727 41.667 6.74 0.00 42.46 4.40
341 346 4.273480 GCTTACTGAAGAGTGAAAAGCACA 59.727 41.667 0.00 0.00 39.56 4.57
342 347 5.559799 GCTTACTGAAGAGTGAAAAGCACAG 60.560 44.000 0.00 0.00 39.56 3.66
343 348 7.889657 GCTTACTGAAGAGTGAAAAGCACAGT 61.890 42.308 0.00 0.00 39.56 3.55
344 349 9.270104 GCTTACTGAAGAGTGAAAAGCACAGTT 62.270 40.741 0.00 0.00 39.56 3.16
361 366 4.796830 CACAGTTTGTGCATCATATGAAGC 59.203 41.667 22.80 22.80 41.89 3.86
362 367 4.460034 ACAGTTTGTGCATCATATGAAGCA 59.540 37.500 27.04 27.04 45.06 3.91
370 375 6.887626 TGCATCATATGAAGCACAATATGT 57.112 33.333 27.04 0.00 42.83 2.29
371 376 6.905578 TGCATCATATGAAGCACAATATGTC 58.094 36.000 27.04 7.70 42.83 3.06
372 377 6.072342 TGCATCATATGAAGCACAATATGTCC 60.072 38.462 27.04 0.23 42.83 4.02
373 378 6.150641 GCATCATATGAAGCACAATATGTCCT 59.849 38.462 24.19 0.00 38.50 3.85
374 379 7.309012 GCATCATATGAAGCACAATATGTCCTT 60.309 37.037 24.19 0.00 38.50 3.36
375 380 9.223099 CATCATATGAAGCACAATATGTCCTTA 57.777 33.333 9.99 0.00 0.00 2.69
376 381 9.797642 ATCATATGAAGCACAATATGTCCTTAA 57.202 29.630 9.99 0.00 0.00 1.85
377 382 9.625747 TCATATGAAGCACAATATGTCCTTAAA 57.374 29.630 1.98 0.00 0.00 1.52
381 386 8.347004 TGAAGCACAATATGTCCTTAAAATGA 57.653 30.769 0.00 0.00 0.00 2.57
382 387 8.801299 TGAAGCACAATATGTCCTTAAAATGAA 58.199 29.630 0.00 0.00 0.00 2.57
383 388 9.638239 GAAGCACAATATGTCCTTAAAATGAAA 57.362 29.630 0.00 0.00 0.00 2.69
384 389 9.995003 AAGCACAATATGTCCTTAAAATGAAAA 57.005 25.926 0.00 0.00 0.00 2.29
385 390 9.643693 AGCACAATATGTCCTTAAAATGAAAAG 57.356 29.630 0.00 0.00 0.00 2.27
386 391 8.382875 GCACAATATGTCCTTAAAATGAAAAGC 58.617 33.333 0.00 0.00 0.00 3.51
387 392 9.421806 CACAATATGTCCTTAAAATGAAAAGCA 57.578 29.630 0.00 0.00 0.00 3.91
388 393 9.995003 ACAATATGTCCTTAAAATGAAAAGCAA 57.005 25.926 0.00 0.00 0.00 3.91
392 397 8.962884 ATGTCCTTAAAATGAAAAGCAAAGTT 57.037 26.923 0.00 0.00 0.00 2.66
393 398 8.195617 TGTCCTTAAAATGAAAAGCAAAGTTG 57.804 30.769 0.00 0.00 0.00 3.16
394 399 7.821846 TGTCCTTAAAATGAAAAGCAAAGTTGT 59.178 29.630 0.00 0.00 0.00 3.32
395 400 8.116136 GTCCTTAAAATGAAAAGCAAAGTTGTG 58.884 33.333 0.00 0.00 0.00 3.33
396 401 6.906678 CCTTAAAATGAAAAGCAAAGTTGTGC 59.093 34.615 0.00 2.87 45.28 4.57
402 407 4.810730 GCAAAGTTGTGCACTGCA 57.189 50.000 19.41 0.00 44.29 4.41
403 408 3.277652 GCAAAGTTGTGCACTGCAT 57.722 47.368 19.41 0.62 44.29 3.96
404 409 0.856641 GCAAAGTTGTGCACTGCATG 59.143 50.000 19.41 11.47 44.29 4.06
405 410 1.536496 GCAAAGTTGTGCACTGCATGA 60.536 47.619 19.41 0.00 44.29 3.07
406 411 2.811855 CAAAGTTGTGCACTGCATGAA 58.188 42.857 19.41 0.00 41.91 2.57
407 412 2.787601 AAGTTGTGCACTGCATGAAG 57.212 45.000 19.41 0.00 41.91 3.02
408 413 0.313043 AGTTGTGCACTGCATGAAGC 59.687 50.000 19.41 0.00 41.91 3.86
417 422 2.956987 GCATGAAGCACAACCGCT 59.043 55.556 0.00 0.00 46.67 5.52
423 428 4.876701 AGCACAACCGCTTTCTGA 57.123 50.000 0.00 0.00 39.99 3.27
424 429 3.094386 AGCACAACCGCTTTCTGAA 57.906 47.368 0.00 0.00 39.99 3.02
425 430 1.388547 AGCACAACCGCTTTCTGAAA 58.611 45.000 2.44 2.44 39.99 2.69
426 431 1.748493 AGCACAACCGCTTTCTGAAAA 59.252 42.857 4.18 0.00 39.99 2.29
427 432 2.119457 GCACAACCGCTTTCTGAAAAG 58.881 47.619 4.18 1.83 43.99 2.27
428 433 2.479560 GCACAACCGCTTTCTGAAAAGT 60.480 45.455 4.18 0.00 43.23 2.66
439 444 7.098503 GCTTTCTGAAAAGTGAAAAGCATAC 57.901 36.000 11.95 0.00 43.23 2.39
440 445 6.144563 GCTTTCTGAAAAGTGAAAAGCATACC 59.855 38.462 11.95 0.00 43.23 2.73
441 446 6.707440 TTCTGAAAAGTGAAAAGCATACCA 57.293 33.333 0.00 0.00 0.00 3.25
442 447 6.899393 TCTGAAAAGTGAAAAGCATACCAT 57.101 33.333 0.00 0.00 0.00 3.55
443 448 6.680810 TCTGAAAAGTGAAAAGCATACCATG 58.319 36.000 0.00 0.00 0.00 3.66
481 486 5.971895 GCAAATTTCTGTGCTTCTCAAAA 57.028 34.783 0.00 0.00 37.78 2.44
482 487 6.348621 GCAAATTTCTGTGCTTCTCAAAAA 57.651 33.333 0.00 0.00 37.78 1.94
506 511 8.515473 AAAAGTGAAATATAAAACGTGCTTCC 57.485 30.769 0.00 0.00 0.00 3.46
507 512 5.864986 AGTGAAATATAAAACGTGCTTCCG 58.135 37.500 0.00 0.00 0.00 4.30
508 513 5.410439 AGTGAAATATAAAACGTGCTTCCGT 59.590 36.000 0.00 0.00 44.23 4.69
514 519 3.335534 ACGTGCTTCCGTTCGTGC 61.336 61.111 0.00 0.00 37.96 5.34
515 520 3.036084 CGTGCTTCCGTTCGTGCT 61.036 61.111 0.00 0.00 0.00 4.40
516 521 2.594962 CGTGCTTCCGTTCGTGCTT 61.595 57.895 0.00 0.00 0.00 3.91
517 522 1.204312 GTGCTTCCGTTCGTGCTTC 59.796 57.895 0.00 0.00 0.00 3.86
518 523 1.959226 TGCTTCCGTTCGTGCTTCC 60.959 57.895 0.00 0.00 0.00 3.46
519 524 1.959226 GCTTCCGTTCGTGCTTCCA 60.959 57.895 0.00 0.00 0.00 3.53
520 525 1.901650 GCTTCCGTTCGTGCTTCCAG 61.902 60.000 0.00 0.00 0.00 3.86
521 526 0.600255 CTTCCGTTCGTGCTTCCAGT 60.600 55.000 0.00 0.00 0.00 4.00
522 527 0.179067 TTCCGTTCGTGCTTCCAGTT 60.179 50.000 0.00 0.00 0.00 3.16
523 528 0.179067 TCCGTTCGTGCTTCCAGTTT 60.179 50.000 0.00 0.00 0.00 2.66
524 529 0.661020 CCGTTCGTGCTTCCAGTTTT 59.339 50.000 0.00 0.00 0.00 2.43
525 530 1.333791 CCGTTCGTGCTTCCAGTTTTC 60.334 52.381 0.00 0.00 0.00 2.29
526 531 1.333791 CGTTCGTGCTTCCAGTTTTCC 60.334 52.381 0.00 0.00 0.00 3.13
527 532 1.947456 GTTCGTGCTTCCAGTTTTCCT 59.053 47.619 0.00 0.00 0.00 3.36
528 533 1.878953 TCGTGCTTCCAGTTTTCCTC 58.121 50.000 0.00 0.00 0.00 3.71
529 534 0.875059 CGTGCTTCCAGTTTTCCTCC 59.125 55.000 0.00 0.00 0.00 4.30
530 535 1.543429 CGTGCTTCCAGTTTTCCTCCT 60.543 52.381 0.00 0.00 0.00 3.69
531 536 2.587522 GTGCTTCCAGTTTTCCTCCTT 58.412 47.619 0.00 0.00 0.00 3.36
532 537 2.959030 GTGCTTCCAGTTTTCCTCCTTT 59.041 45.455 0.00 0.00 0.00 3.11
533 538 3.384789 GTGCTTCCAGTTTTCCTCCTTTT 59.615 43.478 0.00 0.00 0.00 2.27
534 539 4.030216 TGCTTCCAGTTTTCCTCCTTTTT 58.970 39.130 0.00 0.00 0.00 1.94
574 579 8.798859 TTGGGTTTTCATTTCTTCATTTTTCA 57.201 26.923 0.00 0.00 0.00 2.69
575 580 8.436046 TGGGTTTTCATTTCTTCATTTTTCAG 57.564 30.769 0.00 0.00 0.00 3.02
576 581 8.046107 TGGGTTTTCATTTCTTCATTTTTCAGT 58.954 29.630 0.00 0.00 0.00 3.41
577 582 8.892723 GGGTTTTCATTTCTTCATTTTTCAGTT 58.107 29.630 0.00 0.00 0.00 3.16
582 587 9.874205 TTCATTTCTTCATTTTTCAGTTTCTGT 57.126 25.926 0.00 0.00 32.61 3.41
583 588 9.874205 TCATTTCTTCATTTTTCAGTTTCTGTT 57.126 25.926 0.00 0.00 32.61 3.16
617 622 9.790389 TGTCTAAAATCTAGTTTCGAAGATCTC 57.210 33.333 0.00 0.00 35.04 2.75
635 640 1.859383 TCGACACGAGAAATGCAACA 58.141 45.000 0.00 0.00 0.00 3.33
636 641 1.525197 TCGACACGAGAAATGCAACAC 59.475 47.619 0.00 0.00 0.00 3.32
637 642 1.526887 CGACACGAGAAATGCAACACT 59.473 47.619 0.00 0.00 0.00 3.55
638 643 2.729360 CGACACGAGAAATGCAACACTA 59.271 45.455 0.00 0.00 0.00 2.74
639 644 3.183574 CGACACGAGAAATGCAACACTAA 59.816 43.478 0.00 0.00 0.00 2.24
640 645 4.318475 CGACACGAGAAATGCAACACTAAA 60.318 41.667 0.00 0.00 0.00 1.85
641 646 5.493133 ACACGAGAAATGCAACACTAAAA 57.507 34.783 0.00 0.00 0.00 1.52
642 647 5.885881 ACACGAGAAATGCAACACTAAAAA 58.114 33.333 0.00 0.00 0.00 1.94
643 648 5.971202 ACACGAGAAATGCAACACTAAAAAG 59.029 36.000 0.00 0.00 0.00 2.27
644 649 5.399301 CACGAGAAATGCAACACTAAAAAGG 59.601 40.000 0.00 0.00 0.00 3.11
645 650 5.067283 ACGAGAAATGCAACACTAAAAAGGT 59.933 36.000 0.00 0.00 0.00 3.50
646 651 5.977129 CGAGAAATGCAACACTAAAAAGGTT 59.023 36.000 0.00 0.00 0.00 3.50
647 652 6.142320 CGAGAAATGCAACACTAAAAAGGTTC 59.858 38.462 0.00 0.00 0.00 3.62
648 653 6.872920 AGAAATGCAACACTAAAAAGGTTCA 58.127 32.000 0.00 0.00 0.00 3.18
649 654 7.500141 AGAAATGCAACACTAAAAAGGTTCAT 58.500 30.769 0.00 0.00 0.00 2.57
650 655 7.439056 AGAAATGCAACACTAAAAAGGTTCATG 59.561 33.333 0.00 0.00 0.00 3.07
651 656 5.843673 TGCAACACTAAAAAGGTTCATGA 57.156 34.783 0.00 0.00 0.00 3.07
652 657 6.403866 TGCAACACTAAAAAGGTTCATGAT 57.596 33.333 0.00 0.00 0.00 2.45
653 658 6.815089 TGCAACACTAAAAAGGTTCATGATT 58.185 32.000 0.00 0.00 0.00 2.57
654 659 7.271511 TGCAACACTAAAAAGGTTCATGATTT 58.728 30.769 0.00 0.00 0.00 2.17
655 660 7.224362 TGCAACACTAAAAAGGTTCATGATTTG 59.776 33.333 0.00 0.00 0.00 2.32
656 661 7.307337 GCAACACTAAAAAGGTTCATGATTTGG 60.307 37.037 0.00 0.00 0.00 3.28
657 662 7.595819 ACACTAAAAAGGTTCATGATTTGGA 57.404 32.000 8.53 0.00 0.00 3.53
658 663 7.433680 ACACTAAAAAGGTTCATGATTTGGAC 58.566 34.615 8.53 0.00 32.45 4.02
659 664 6.582295 CACTAAAAAGGTTCATGATTTGGACG 59.418 38.462 8.53 0.00 34.26 4.79
660 665 3.575965 AAAGGTTCATGATTTGGACGC 57.424 42.857 0.00 0.00 34.26 5.19
661 666 2.198827 AGGTTCATGATTTGGACGCA 57.801 45.000 0.00 0.00 34.26 5.24
662 667 1.812571 AGGTTCATGATTTGGACGCAC 59.187 47.619 0.00 0.00 34.26 5.34
663 668 1.539388 GGTTCATGATTTGGACGCACA 59.461 47.619 0.00 0.00 34.26 4.57
664 669 2.030363 GGTTCATGATTTGGACGCACAA 60.030 45.455 0.00 0.00 34.26 3.33
665 670 3.551863 GGTTCATGATTTGGACGCACAAA 60.552 43.478 0.00 7.44 43.69 2.83
675 680 6.910536 TTTGGACGCACAAATAAAACATTT 57.089 29.167 1.44 0.00 35.57 2.32
676 681 6.910536 TTGGACGCACAAATAAAACATTTT 57.089 29.167 0.00 0.00 0.00 1.82
677 682 6.279227 TGGACGCACAAATAAAACATTTTG 57.721 33.333 0.00 0.00 38.49 2.44
678 683 6.042777 TGGACGCACAAATAAAACATTTTGA 58.957 32.000 0.00 0.00 36.54 2.69
679 684 6.535150 TGGACGCACAAATAAAACATTTTGAA 59.465 30.769 0.00 0.00 36.54 2.69
680 685 7.064609 TGGACGCACAAATAAAACATTTTGAAA 59.935 29.630 0.00 0.00 36.54 2.69
681 686 7.905493 GGACGCACAAATAAAACATTTTGAAAA 59.095 29.630 0.00 0.00 36.54 2.29
682 687 8.594418 ACGCACAAATAAAACATTTTGAAAAC 57.406 26.923 0.00 0.00 36.54 2.43
683 688 8.447053 ACGCACAAATAAAACATTTTGAAAACT 58.553 25.926 0.00 0.00 36.54 2.66
684 689 8.932963 CGCACAAATAAAACATTTTGAAAACTC 58.067 29.630 0.00 0.00 36.54 3.01
685 690 9.986833 GCACAAATAAAACATTTTGAAAACTCT 57.013 25.926 0.00 0.00 36.54 3.24
699 704 9.751542 TTTTGAAAACTCTACAAGAAAAACACA 57.248 25.926 0.00 0.00 0.00 3.72
700 705 9.751542 TTTGAAAACTCTACAAGAAAAACACAA 57.248 25.926 0.00 0.00 0.00 3.33
701 706 9.751542 TTGAAAACTCTACAAGAAAAACACAAA 57.248 25.926 0.00 0.00 0.00 2.83
702 707 9.751542 TGAAAACTCTACAAGAAAAACACAAAA 57.248 25.926 0.00 0.00 0.00 2.44
704 709 9.758651 AAAACTCTACAAGAAAAACACAAAACT 57.241 25.926 0.00 0.00 0.00 2.66
705 710 9.758651 AAACTCTACAAGAAAAACACAAAACTT 57.241 25.926 0.00 0.00 0.00 2.66
706 711 8.965986 ACTCTACAAGAAAAACACAAAACTTC 57.034 30.769 0.00 0.00 0.00 3.01
707 712 8.573035 ACTCTACAAGAAAAACACAAAACTTCA 58.427 29.630 0.00 0.00 0.00 3.02
708 713 8.736751 TCTACAAGAAAAACACAAAACTTCAC 57.263 30.769 0.00 0.00 0.00 3.18
709 714 6.446659 ACAAGAAAAACACAAAACTTCACG 57.553 33.333 0.00 0.00 0.00 4.35
710 715 5.404066 ACAAGAAAAACACAAAACTTCACGG 59.596 36.000 0.00 0.00 0.00 4.94
711 716 5.128992 AGAAAAACACAAAACTTCACGGT 57.871 34.783 0.00 0.00 0.00 4.83
712 717 5.534407 AGAAAAACACAAAACTTCACGGTT 58.466 33.333 0.00 0.00 0.00 4.44
713 718 6.679843 AGAAAAACACAAAACTTCACGGTTA 58.320 32.000 0.00 0.00 0.00 2.85
714 719 6.583427 AGAAAAACACAAAACTTCACGGTTAC 59.417 34.615 0.00 0.00 0.00 2.50
716 721 3.260740 ACACAAAACTTCACGGTTACGA 58.739 40.909 0.00 0.00 44.60 3.43
717 722 3.062504 ACACAAAACTTCACGGTTACGAC 59.937 43.478 0.00 0.00 44.60 4.34
718 723 3.062369 CACAAAACTTCACGGTTACGACA 59.938 43.478 0.00 0.00 44.60 4.35
719 724 3.683822 ACAAAACTTCACGGTTACGACAA 59.316 39.130 0.00 0.00 44.60 3.18
720 725 4.153835 ACAAAACTTCACGGTTACGACAAA 59.846 37.500 0.00 0.00 44.60 2.83
721 726 4.943142 AAACTTCACGGTTACGACAAAA 57.057 36.364 0.00 0.00 44.60 2.44
722 727 5.488645 AAACTTCACGGTTACGACAAAAT 57.511 34.783 0.00 0.00 44.60 1.82
723 728 4.461992 ACTTCACGGTTACGACAAAATG 57.538 40.909 0.00 0.00 44.60 2.32
724 729 4.121317 ACTTCACGGTTACGACAAAATGA 58.879 39.130 0.00 0.00 44.60 2.57
725 730 4.210537 ACTTCACGGTTACGACAAAATGAG 59.789 41.667 0.00 0.00 44.60 2.90
726 731 3.719924 TCACGGTTACGACAAAATGAGT 58.280 40.909 0.00 0.00 44.60 3.41
727 732 3.491639 TCACGGTTACGACAAAATGAGTG 59.508 43.478 0.00 0.00 44.60 3.51
728 733 2.222445 ACGGTTACGACAAAATGAGTGC 59.778 45.455 0.00 0.00 44.60 4.40
729 734 2.222213 CGGTTACGACAAAATGAGTGCA 59.778 45.455 0.00 0.00 44.60 4.57
730 735 3.551551 GGTTACGACAAAATGAGTGCAC 58.448 45.455 9.40 9.40 0.00 4.57
731 736 3.551551 GTTACGACAAAATGAGTGCACC 58.448 45.455 14.63 5.76 0.00 5.01
732 737 1.674359 ACGACAAAATGAGTGCACCA 58.326 45.000 14.63 11.88 0.00 4.17
733 738 1.333619 ACGACAAAATGAGTGCACCAC 59.666 47.619 14.63 9.00 34.10 4.16
735 740 2.033299 CGACAAAATGAGTGCACCACTT 59.967 45.455 14.63 4.67 45.44 3.16
736 741 3.632189 GACAAAATGAGTGCACCACTTC 58.368 45.455 14.63 4.92 45.44 3.01
737 742 2.362077 ACAAAATGAGTGCACCACTTCC 59.638 45.455 14.63 0.00 45.44 3.46
738 743 2.361757 CAAAATGAGTGCACCACTTCCA 59.638 45.455 14.63 2.75 45.44 3.53
739 744 1.609208 AATGAGTGCACCACTTCCAC 58.391 50.000 14.63 0.00 45.44 4.02
740 745 0.767375 ATGAGTGCACCACTTCCACT 59.233 50.000 14.63 0.00 45.44 4.00
741 746 0.546122 TGAGTGCACCACTTCCACTT 59.454 50.000 14.63 0.00 45.44 3.16
742 747 0.947244 GAGTGCACCACTTCCACTTG 59.053 55.000 14.63 0.00 45.44 3.16
743 748 0.255890 AGTGCACCACTTCCACTTGT 59.744 50.000 14.63 0.00 42.59 3.16
744 749 0.663153 GTGCACCACTTCCACTTGTC 59.337 55.000 5.22 0.00 0.00 3.18
745 750 0.813610 TGCACCACTTCCACTTGTCG 60.814 55.000 0.00 0.00 0.00 4.35
746 751 1.941812 CACCACTTCCACTTGTCGC 59.058 57.895 0.00 0.00 0.00 5.19
747 752 1.227853 ACCACTTCCACTTGTCGCC 60.228 57.895 0.00 0.00 0.00 5.54
748 753 1.227823 CCACTTCCACTTGTCGCCA 60.228 57.895 0.00 0.00 0.00 5.69
749 754 0.606401 CCACTTCCACTTGTCGCCAT 60.606 55.000 0.00 0.00 0.00 4.40
750 755 0.798776 CACTTCCACTTGTCGCCATC 59.201 55.000 0.00 0.00 0.00 3.51
751 756 0.396435 ACTTCCACTTGTCGCCATCA 59.604 50.000 0.00 0.00 0.00 3.07
752 757 1.003580 ACTTCCACTTGTCGCCATCAT 59.996 47.619 0.00 0.00 0.00 2.45
753 758 2.236146 ACTTCCACTTGTCGCCATCATA 59.764 45.455 0.00 0.00 0.00 2.15
754 759 2.602257 TCCACTTGTCGCCATCATAG 57.398 50.000 0.00 0.00 0.00 2.23
755 760 2.107366 TCCACTTGTCGCCATCATAGA 58.893 47.619 0.00 0.00 0.00 1.98
756 761 2.499693 TCCACTTGTCGCCATCATAGAA 59.500 45.455 0.00 0.00 0.00 2.10
757 762 3.055458 TCCACTTGTCGCCATCATAGAAA 60.055 43.478 0.00 0.00 0.00 2.52
758 763 3.310774 CCACTTGTCGCCATCATAGAAAG 59.689 47.826 0.00 0.00 0.00 2.62
759 764 4.183865 CACTTGTCGCCATCATAGAAAGA 58.816 43.478 0.00 0.00 0.00 2.52
760 765 4.631377 CACTTGTCGCCATCATAGAAAGAA 59.369 41.667 0.00 0.00 0.00 2.52
761 766 5.122239 CACTTGTCGCCATCATAGAAAGAAA 59.878 40.000 0.00 0.00 0.00 2.52
762 767 5.705441 ACTTGTCGCCATCATAGAAAGAAAA 59.295 36.000 0.00 0.00 0.00 2.29
763 768 6.375455 ACTTGTCGCCATCATAGAAAGAAAAT 59.625 34.615 0.00 0.00 0.00 1.82
764 769 6.122850 TGTCGCCATCATAGAAAGAAAATG 57.877 37.500 0.00 0.00 0.00 2.32
765 770 5.066375 TGTCGCCATCATAGAAAGAAAATGG 59.934 40.000 0.00 0.00 37.34 3.16
766 771 4.580167 TCGCCATCATAGAAAGAAAATGGG 59.420 41.667 0.00 0.00 35.32 4.00
767 772 4.580167 CGCCATCATAGAAAGAAAATGGGA 59.420 41.667 0.00 0.00 35.32 4.37
768 773 5.278169 CGCCATCATAGAAAGAAAATGGGAG 60.278 44.000 0.00 0.00 35.32 4.30
769 774 5.595952 GCCATCATAGAAAGAAAATGGGAGT 59.404 40.000 0.00 0.00 35.32 3.85
770 775 6.460676 GCCATCATAGAAAGAAAATGGGAGTG 60.461 42.308 0.00 0.00 35.32 3.51
771 776 6.830324 CCATCATAGAAAGAAAATGGGAGTGA 59.170 38.462 0.00 0.00 31.93 3.41
772 777 7.201767 CCATCATAGAAAGAAAATGGGAGTGAC 60.202 40.741 0.00 0.00 31.93 3.67
773 778 6.180472 TCATAGAAAGAAAATGGGAGTGACC 58.820 40.000 0.00 0.00 38.08 4.02
774 779 4.731313 AGAAAGAAAATGGGAGTGACCT 57.269 40.909 0.00 0.00 38.98 3.85
775 780 5.066913 AGAAAGAAAATGGGAGTGACCTT 57.933 39.130 0.00 0.00 38.98 3.50
776 781 4.829492 AGAAAGAAAATGGGAGTGACCTTG 59.171 41.667 0.00 0.00 38.98 3.61
777 782 2.519013 AGAAAATGGGAGTGACCTTGC 58.481 47.619 0.00 0.00 38.98 4.01
778 783 2.158475 AGAAAATGGGAGTGACCTTGCA 60.158 45.455 0.00 0.00 38.98 4.08
779 784 1.620822 AAATGGGAGTGACCTTGCAC 58.379 50.000 0.00 0.00 38.98 4.57
780 785 0.251341 AATGGGAGTGACCTTGCACC 60.251 55.000 0.00 0.00 39.59 5.01
781 786 1.136329 ATGGGAGTGACCTTGCACCT 61.136 55.000 0.00 0.00 39.59 4.00
782 787 1.352622 TGGGAGTGACCTTGCACCTT 61.353 55.000 0.00 0.00 39.59 3.50
783 788 0.178990 GGGAGTGACCTTGCACCTTT 60.179 55.000 0.00 0.00 39.59 3.11
784 789 0.954452 GGAGTGACCTTGCACCTTTG 59.046 55.000 0.00 0.00 39.59 2.77
785 790 3.018478 GGAGTGACCTTGCACCTTTGC 62.018 57.143 0.00 0.00 41.61 3.68
797 802 2.653557 CCTTTGCAAGGGGTACACC 58.346 57.895 19.57 5.83 45.27 4.16
798 803 0.112412 CCTTTGCAAGGGGTACACCT 59.888 55.000 19.57 12.16 45.27 4.00
805 810 3.792709 AGGGGTACACCTTAACCGA 57.207 52.632 12.16 0.00 37.69 4.69
806 811 2.259014 AGGGGTACACCTTAACCGAT 57.741 50.000 12.16 0.00 37.69 4.18
807 812 1.835531 AGGGGTACACCTTAACCGATG 59.164 52.381 12.16 0.00 37.69 3.84
808 813 1.832998 GGGGTACACCTTAACCGATGA 59.167 52.381 6.99 0.00 40.03 2.92
809 814 2.436911 GGGGTACACCTTAACCGATGAT 59.563 50.000 6.99 0.00 40.03 2.45
810 815 3.118149 GGGGTACACCTTAACCGATGATT 60.118 47.826 6.99 0.00 40.03 2.57
811 816 4.520179 GGGTACACCTTAACCGATGATTT 58.480 43.478 0.00 0.00 36.57 2.17
812 817 4.945543 GGGTACACCTTAACCGATGATTTT 59.054 41.667 0.00 0.00 36.57 1.82
813 818 5.163693 GGGTACACCTTAACCGATGATTTTG 60.164 44.000 0.00 0.00 36.57 2.44
814 819 5.644636 GGTACACCTTAACCGATGATTTTGA 59.355 40.000 0.00 0.00 0.00 2.69
815 820 5.622770 ACACCTTAACCGATGATTTTGAC 57.377 39.130 0.00 0.00 0.00 3.18
816 821 4.153475 ACACCTTAACCGATGATTTTGACG 59.847 41.667 0.00 0.00 0.00 4.35
818 823 3.936453 CCTTAACCGATGATTTTGACGGA 59.064 43.478 11.27 0.00 46.94 4.69
819 824 4.034048 CCTTAACCGATGATTTTGACGGAG 59.966 45.833 11.27 0.00 46.94 4.63
838 843 2.947448 GTTGGATCAACTTCCATGGC 57.053 50.000 6.96 0.00 45.08 4.40
839 844 1.478105 GTTGGATCAACTTCCATGGCC 59.522 52.381 6.96 0.00 45.08 5.36
840 845 0.703488 TGGATCAACTTCCATGGCCA 59.297 50.000 8.56 8.56 40.90 5.36
841 846 1.076841 TGGATCAACTTCCATGGCCAA 59.923 47.619 10.96 0.00 40.90 4.52
842 847 2.292389 TGGATCAACTTCCATGGCCAAT 60.292 45.455 10.96 0.00 40.90 3.16
843 848 2.101917 GGATCAACTTCCATGGCCAATG 59.898 50.000 10.96 8.95 35.72 2.82
844 849 2.601240 TCAACTTCCATGGCCAATGA 57.399 45.000 10.96 6.48 38.72 2.57
845 850 3.104519 TCAACTTCCATGGCCAATGAT 57.895 42.857 10.96 0.00 38.72 2.45
846 851 3.443052 TCAACTTCCATGGCCAATGATT 58.557 40.909 10.96 0.00 38.72 2.57
847 852 3.196039 TCAACTTCCATGGCCAATGATTG 59.804 43.478 10.96 11.67 38.72 2.67
848 853 3.104519 ACTTCCATGGCCAATGATTGA 57.895 42.857 10.96 0.00 38.72 2.57
849 854 3.443052 ACTTCCATGGCCAATGATTGAA 58.557 40.909 10.96 5.69 38.72 2.69
850 855 3.839490 ACTTCCATGGCCAATGATTGAAA 59.161 39.130 10.96 0.00 38.72 2.69
851 856 4.472108 ACTTCCATGGCCAATGATTGAAAT 59.528 37.500 10.96 0.00 38.72 2.17
852 857 5.662208 ACTTCCATGGCCAATGATTGAAATA 59.338 36.000 10.96 0.00 38.72 1.40
853 858 5.794726 TCCATGGCCAATGATTGAAATAG 57.205 39.130 10.96 0.00 38.72 1.73
854 859 4.039488 TCCATGGCCAATGATTGAAATAGC 59.961 41.667 10.96 0.71 38.72 2.97
855 860 4.202274 CCATGGCCAATGATTGAAATAGCA 60.202 41.667 10.96 0.00 38.72 3.49
856 861 4.659111 TGGCCAATGATTGAAATAGCAG 57.341 40.909 0.61 0.00 0.00 4.24
857 862 4.025360 TGGCCAATGATTGAAATAGCAGT 58.975 39.130 0.61 0.00 0.00 4.40
858 863 4.467082 TGGCCAATGATTGAAATAGCAGTT 59.533 37.500 0.61 0.00 0.00 3.16
859 864 5.046448 TGGCCAATGATTGAAATAGCAGTTT 60.046 36.000 0.61 0.00 0.00 2.66
860 865 5.292589 GGCCAATGATTGAAATAGCAGTTTG 59.707 40.000 6.76 0.00 0.00 2.93
861 866 5.220529 GCCAATGATTGAAATAGCAGTTTGC 60.221 40.000 6.76 0.00 45.46 3.68
941 949 3.568430 CCTCATCATGTGCACATTGCTAT 59.432 43.478 29.48 16.81 45.31 2.97
1114 1122 1.869767 ACGCTGCTTTCAGAAGTTCAG 59.130 47.619 5.50 0.00 42.95 3.02
1695 2828 1.339631 TGGGTCAAAATGGAGTAGCCG 60.340 52.381 0.00 0.00 40.66 5.52
1716 2866 3.749609 CGAACCCCCAGTTTGTTAGTAAG 59.250 47.826 0.00 0.00 39.40 2.34
1718 2868 5.567430 GAACCCCCAGTTTGTTAGTAAGAT 58.433 41.667 0.00 0.00 39.40 2.40
1719 2869 5.175388 ACCCCCAGTTTGTTAGTAAGATC 57.825 43.478 0.00 0.00 0.00 2.75
1720 2870 4.018688 ACCCCCAGTTTGTTAGTAAGATCC 60.019 45.833 0.00 0.00 0.00 3.36
1721 2871 4.189231 CCCCAGTTTGTTAGTAAGATCCG 58.811 47.826 0.00 0.00 0.00 4.18
1722 2872 4.189231 CCCAGTTTGTTAGTAAGATCCGG 58.811 47.826 0.00 0.00 0.00 5.14
1723 2873 4.189231 CCAGTTTGTTAGTAAGATCCGGG 58.811 47.826 0.00 0.00 0.00 5.73
1724 2874 3.621715 CAGTTTGTTAGTAAGATCCGGGC 59.378 47.826 0.00 0.00 0.00 6.13
1725 2875 3.518303 AGTTTGTTAGTAAGATCCGGGCT 59.482 43.478 0.00 0.00 0.00 5.19
1726 2876 3.814005 TTGTTAGTAAGATCCGGGCTC 57.186 47.619 0.00 0.00 0.00 4.70
1727 2877 2.037144 TGTTAGTAAGATCCGGGCTCC 58.963 52.381 0.00 0.00 0.00 4.70
1728 2878 1.343789 GTTAGTAAGATCCGGGCTCCC 59.656 57.143 0.00 0.00 0.00 4.30
1729 2879 0.858369 TAGTAAGATCCGGGCTCCCT 59.142 55.000 0.00 2.11 0.00 4.20
1730 2880 0.760945 AGTAAGATCCGGGCTCCCTG 60.761 60.000 0.00 0.00 0.00 4.45
1731 2881 0.759436 GTAAGATCCGGGCTCCCTGA 60.759 60.000 0.00 2.26 33.96 3.86
1732 2882 0.470080 TAAGATCCGGGCTCCCTGAG 60.470 60.000 0.00 0.00 32.98 3.35
1829 2979 5.063180 TCACCATGAGCATGTGAAAAATC 57.937 39.130 9.39 0.00 37.11 2.17
1867 3017 8.050778 TGTGATTTGTAGGCTGTATAAAAAGG 57.949 34.615 0.00 0.00 0.00 3.11
1868 3018 7.885922 TGTGATTTGTAGGCTGTATAAAAAGGA 59.114 33.333 0.00 0.00 0.00 3.36
1869 3019 8.736244 GTGATTTGTAGGCTGTATAAAAAGGAA 58.264 33.333 0.00 0.00 0.00 3.36
1875 3025 9.528489 TGTAGGCTGTATAAAAAGGAAATTTCT 57.472 29.630 17.42 0.33 0.00 2.52
1887 3037 6.432403 AAGGAAATTTCTGCCCAATAACAA 57.568 33.333 17.42 0.00 0.00 2.83
1922 3072 5.006261 GCCCATTTTGGAAATACGTATTTGC 59.994 40.000 33.15 33.15 40.96 3.68
1928 3078 8.664211 TTTTGGAAATACGTATTTGCCTTTTT 57.336 26.923 35.00 15.68 41.50 1.94
2057 3213 6.687081 TTTTTAGAACGAAGGCTCAAGAAA 57.313 33.333 0.00 0.00 0.00 2.52
2123 3279 2.948979 CAGGACTGCCACTTACAACAAA 59.051 45.455 0.00 0.00 36.29 2.83
2190 3361 0.455633 GAAGTCGAACGCCGCTAAGA 60.456 55.000 0.00 0.00 38.37 2.10
2437 3613 1.384525 CAGGAACAAACCCACACGAA 58.615 50.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.104235 GGTACCCTTTAATTGCTTCCCTCTA 60.104 44.000 0.00 0.00 0.00 2.43
31 36 4.090588 CCCGAGCGCAAAGGGGTA 62.091 66.667 22.31 0.00 41.43 3.69
39 44 3.793775 TTGTTTCGTCCCGAGCGCA 62.794 57.895 11.47 0.00 37.14 6.09
51 56 2.096819 TGCGTCCTCAAGTGTTTGTTTC 59.903 45.455 0.00 0.00 35.73 2.78
52 57 2.088423 TGCGTCCTCAAGTGTTTGTTT 58.912 42.857 0.00 0.00 35.73 2.83
60 65 0.952497 CTGCATGTGCGTCCTCAAGT 60.952 55.000 0.01 0.00 45.83 3.16
93 98 1.908619 ACACATGGCAGTGACTGGATA 59.091 47.619 15.24 0.00 42.05 2.59
103 108 0.935831 CAACGTGCAACACATGGCAG 60.936 55.000 0.00 0.00 41.35 4.85
152 157 5.355596 TCCTAAAAGCCAAAAATGTGTGTG 58.644 37.500 0.00 0.00 0.00 3.82
165 170 4.641396 ACCAAAGCAAAATCCTAAAAGCC 58.359 39.130 0.00 0.00 0.00 4.35
167 172 7.498900 AGGAAAACCAAAGCAAAATCCTAAAAG 59.501 33.333 0.00 0.00 34.41 2.27
223 228 4.214332 GTGCTTCACGAGGAGAAAAGAAAT 59.786 41.667 0.00 0.00 0.00 2.17
238 243 3.621268 TGTACTTCACAACTGTGCTTCAC 59.379 43.478 4.92 2.21 45.25 3.18
294 299 1.943340 TGTTGTGCTTCACGTAATGCA 59.057 42.857 0.00 0.00 37.14 3.96
295 300 2.679355 TGTTGTGCTTCACGTAATGC 57.321 45.000 0.00 0.00 37.14 3.56
296 301 3.907788 CACATGTTGTGCTTCACGTAATG 59.092 43.478 0.00 0.00 41.89 1.90
297 302 4.145876 CACATGTTGTGCTTCACGTAAT 57.854 40.909 0.00 0.00 41.89 1.89
298 303 3.600717 CACATGTTGTGCTTCACGTAA 57.399 42.857 0.00 0.00 41.89 3.18
309 314 4.512944 CACTCTTCAGTAAGCACATGTTGT 59.487 41.667 0.00 0.00 32.36 3.32
310 315 4.751600 TCACTCTTCAGTAAGCACATGTTG 59.248 41.667 0.00 0.00 32.36 3.33
311 316 4.960938 TCACTCTTCAGTAAGCACATGTT 58.039 39.130 0.00 0.00 32.36 2.71
312 317 4.607293 TCACTCTTCAGTAAGCACATGT 57.393 40.909 0.00 0.00 32.36 3.21
313 318 5.929697 TTTCACTCTTCAGTAAGCACATG 57.070 39.130 0.00 0.00 32.36 3.21
314 319 5.049129 GCTTTTCACTCTTCAGTAAGCACAT 60.049 40.000 0.00 0.00 39.83 3.21
322 327 3.878778 ACTGTGCTTTTCACTCTTCAGT 58.121 40.909 0.00 0.00 45.81 3.41
323 328 4.889832 AACTGTGCTTTTCACTCTTCAG 57.110 40.909 0.00 0.00 45.81 3.02
339 344 4.460034 TGCTTCATATGATGCACAAACTGT 59.540 37.500 31.60 0.00 46.06 3.55
340 345 4.989044 TGCTTCATATGATGCACAAACTG 58.011 39.130 31.60 6.03 46.06 3.16
348 353 6.320171 GGACATATTGTGCTTCATATGATGC 58.680 40.000 28.04 28.04 43.15 3.91
360 365 8.382875 GCTTTTCATTTTAAGGACATATTGTGC 58.617 33.333 0.00 0.00 39.13 4.57
361 366 9.421806 TGCTTTTCATTTTAAGGACATATTGTG 57.578 29.630 0.00 0.00 0.00 3.33
362 367 9.995003 TTGCTTTTCATTTTAAGGACATATTGT 57.005 25.926 0.00 0.00 0.00 2.71
367 372 8.829612 CAACTTTGCTTTTCATTTTAAGGACAT 58.170 29.630 0.00 0.00 0.00 3.06
368 373 7.821846 ACAACTTTGCTTTTCATTTTAAGGACA 59.178 29.630 0.00 0.00 0.00 4.02
369 374 8.116136 CACAACTTTGCTTTTCATTTTAAGGAC 58.884 33.333 0.00 0.00 0.00 3.85
370 375 7.201600 GCACAACTTTGCTTTTCATTTTAAGGA 60.202 33.333 0.00 0.00 39.59 3.36
371 376 6.906678 GCACAACTTTGCTTTTCATTTTAAGG 59.093 34.615 0.00 0.00 39.59 2.69
372 377 7.426169 GTGCACAACTTTGCTTTTCATTTTAAG 59.574 33.333 13.17 0.00 43.41 1.85
373 378 7.118971 AGTGCACAACTTTGCTTTTCATTTTAA 59.881 29.630 21.04 0.00 43.41 1.52
374 379 6.593382 AGTGCACAACTTTGCTTTTCATTTTA 59.407 30.769 21.04 0.00 43.41 1.52
375 380 5.412286 AGTGCACAACTTTGCTTTTCATTTT 59.588 32.000 21.04 0.00 43.41 1.82
376 381 4.937015 AGTGCACAACTTTGCTTTTCATTT 59.063 33.333 21.04 0.00 43.41 2.32
377 382 4.330620 CAGTGCACAACTTTGCTTTTCATT 59.669 37.500 21.04 0.00 43.41 2.57
378 383 3.866910 CAGTGCACAACTTTGCTTTTCAT 59.133 39.130 21.04 0.00 43.41 2.57
379 384 3.252400 CAGTGCACAACTTTGCTTTTCA 58.748 40.909 21.04 0.00 43.41 2.69
380 385 2.029606 GCAGTGCACAACTTTGCTTTTC 59.970 45.455 21.04 0.00 43.41 2.29
381 386 2.001872 GCAGTGCACAACTTTGCTTTT 58.998 42.857 21.04 0.00 43.41 2.27
382 387 1.067000 TGCAGTGCACAACTTTGCTTT 60.067 42.857 23.39 0.00 43.41 3.51
383 388 0.531657 TGCAGTGCACAACTTTGCTT 59.468 45.000 23.39 0.00 43.41 3.91
384 389 0.748450 ATGCAGTGCACAACTTTGCT 59.252 45.000 22.44 10.46 43.04 3.91
385 390 0.856641 CATGCAGTGCACAACTTTGC 59.143 50.000 22.44 19.42 43.04 3.68
386 391 2.495409 TCATGCAGTGCACAACTTTG 57.505 45.000 22.44 13.93 43.04 2.77
387 392 2.800629 GCTTCATGCAGTGCACAACTTT 60.801 45.455 22.44 0.00 43.04 2.66
388 393 1.269413 GCTTCATGCAGTGCACAACTT 60.269 47.619 22.44 0.00 43.04 2.66
389 394 0.313043 GCTTCATGCAGTGCACAACT 59.687 50.000 22.44 0.38 43.04 3.16
390 395 2.805277 GCTTCATGCAGTGCACAAC 58.195 52.632 22.44 11.00 43.04 3.32
400 405 2.956987 AGCGGTTGTGCTTCATGC 59.043 55.556 0.00 0.00 44.46 4.06
407 412 2.119457 CTTTTCAGAAAGCGGTTGTGC 58.881 47.619 0.00 0.00 36.19 4.57
408 413 3.108144 CACTTTTCAGAAAGCGGTTGTG 58.892 45.455 0.00 1.81 44.92 3.33
409 414 3.013921 TCACTTTTCAGAAAGCGGTTGT 58.986 40.909 0.00 0.00 44.92 3.32
410 415 3.691049 TCACTTTTCAGAAAGCGGTTG 57.309 42.857 0.00 0.00 44.92 3.77
411 416 4.712122 TTTCACTTTTCAGAAAGCGGTT 57.288 36.364 0.00 0.00 44.92 4.44
412 417 4.672409 CTTTTCACTTTTCAGAAAGCGGT 58.328 39.130 0.00 0.00 44.92 5.68
413 418 3.487207 GCTTTTCACTTTTCAGAAAGCGG 59.513 43.478 3.74 0.00 44.92 5.52
414 419 4.104776 TGCTTTTCACTTTTCAGAAAGCG 58.895 39.130 12.63 0.00 44.92 4.68
415 420 6.144563 GGTATGCTTTTCACTTTTCAGAAAGC 59.855 38.462 11.08 11.08 44.92 3.51
416 421 7.202526 TGGTATGCTTTTCACTTTTCAGAAAG 58.797 34.615 0.00 0.00 46.17 2.62
417 422 7.106439 TGGTATGCTTTTCACTTTTCAGAAA 57.894 32.000 0.00 0.00 32.34 2.52
418 423 6.707440 TGGTATGCTTTTCACTTTTCAGAA 57.293 33.333 0.00 0.00 0.00 3.02
419 424 6.680810 CATGGTATGCTTTTCACTTTTCAGA 58.319 36.000 0.00 0.00 0.00 3.27
420 425 6.939551 CATGGTATGCTTTTCACTTTTCAG 57.060 37.500 0.00 0.00 0.00 3.02
444 449 3.725459 TGCTTCACGCATGCGGTG 61.725 61.111 39.95 32.22 45.47 4.94
452 457 1.453148 GCACAGAAATTTGCTTCACGC 59.547 47.619 0.00 0.00 35.74 5.34
459 464 5.971895 TTTTGAGAAGCACAGAAATTTGC 57.028 34.783 0.00 0.00 39.16 3.68
480 485 8.974408 GGAAGCACGTTTTATATTTCACTTTTT 58.026 29.630 0.00 0.00 0.00 1.94
481 486 7.325097 CGGAAGCACGTTTTATATTTCACTTTT 59.675 33.333 0.00 0.00 0.00 2.27
482 487 6.799925 CGGAAGCACGTTTTATATTTCACTTT 59.200 34.615 0.00 0.00 0.00 2.66
483 488 6.072893 ACGGAAGCACGTTTTATATTTCACTT 60.073 34.615 0.00 0.00 46.25 3.16
484 489 5.410439 ACGGAAGCACGTTTTATATTTCACT 59.590 36.000 0.00 0.00 46.25 3.41
485 490 5.624292 ACGGAAGCACGTTTTATATTTCAC 58.376 37.500 0.00 0.00 46.25 3.18
486 491 5.866335 ACGGAAGCACGTTTTATATTTCA 57.134 34.783 0.00 0.00 46.25 2.69
498 503 2.480426 GAAGCACGAACGGAAGCACG 62.480 60.000 0.00 0.00 38.50 5.34
499 504 1.204312 GAAGCACGAACGGAAGCAC 59.796 57.895 0.00 2.60 0.00 4.40
500 505 1.959226 GGAAGCACGAACGGAAGCA 60.959 57.895 0.00 0.00 0.00 3.91
501 506 1.901650 CTGGAAGCACGAACGGAAGC 61.902 60.000 0.00 0.30 0.00 3.86
502 507 0.600255 ACTGGAAGCACGAACGGAAG 60.600 55.000 0.00 0.00 37.60 3.46
503 508 0.179067 AACTGGAAGCACGAACGGAA 60.179 50.000 0.00 0.00 37.60 4.30
504 509 0.179067 AAACTGGAAGCACGAACGGA 60.179 50.000 0.00 0.00 37.60 4.69
505 510 0.661020 AAAACTGGAAGCACGAACGG 59.339 50.000 0.00 0.00 37.60 4.44
506 511 1.333791 GGAAAACTGGAAGCACGAACG 60.334 52.381 0.00 0.00 37.60 3.95
507 512 1.947456 AGGAAAACTGGAAGCACGAAC 59.053 47.619 0.00 0.00 37.60 3.95
508 513 2.218603 GAGGAAAACTGGAAGCACGAA 58.781 47.619 0.00 0.00 37.60 3.85
509 514 1.542547 GGAGGAAAACTGGAAGCACGA 60.543 52.381 0.00 0.00 37.60 4.35
510 515 0.875059 GGAGGAAAACTGGAAGCACG 59.125 55.000 0.00 0.00 37.60 5.34
511 516 2.278332 AGGAGGAAAACTGGAAGCAC 57.722 50.000 0.00 0.00 37.60 4.40
512 517 3.312736 AAAGGAGGAAAACTGGAAGCA 57.687 42.857 0.00 0.00 37.60 3.91
513 518 4.672587 AAAAAGGAGGAAAACTGGAAGC 57.327 40.909 0.00 0.00 37.60 3.86
548 553 9.236006 TGAAAAATGAAGAAATGAAAACCCAAA 57.764 25.926 0.00 0.00 0.00 3.28
549 554 8.798859 TGAAAAATGAAGAAATGAAAACCCAA 57.201 26.923 0.00 0.00 0.00 4.12
550 555 8.046107 ACTGAAAAATGAAGAAATGAAAACCCA 58.954 29.630 0.00 0.00 0.00 4.51
551 556 8.437360 ACTGAAAAATGAAGAAATGAAAACCC 57.563 30.769 0.00 0.00 0.00 4.11
556 561 9.874205 ACAGAAACTGAAAAATGAAGAAATGAA 57.126 25.926 5.76 0.00 35.18 2.57
557 562 9.874205 AACAGAAACTGAAAAATGAAGAAATGA 57.126 25.926 5.76 0.00 35.18 2.57
591 596 9.790389 GAGATCTTCGAAACTAGATTTTAGACA 57.210 33.333 0.00 0.00 31.46 3.41
616 621 1.525197 GTGTTGCATTTCTCGTGTCGA 59.475 47.619 0.00 0.00 0.00 4.20
617 622 1.526887 AGTGTTGCATTTCTCGTGTCG 59.473 47.619 0.00 0.00 0.00 4.35
618 623 4.725556 TTAGTGTTGCATTTCTCGTGTC 57.274 40.909 0.00 0.00 0.00 3.67
619 624 5.493133 TTTTAGTGTTGCATTTCTCGTGT 57.507 34.783 0.00 0.00 0.00 4.49
620 625 5.399301 CCTTTTTAGTGTTGCATTTCTCGTG 59.601 40.000 0.00 0.00 0.00 4.35
621 626 5.067283 ACCTTTTTAGTGTTGCATTTCTCGT 59.933 36.000 0.00 0.00 0.00 4.18
622 627 5.519722 ACCTTTTTAGTGTTGCATTTCTCG 58.480 37.500 0.00 0.00 0.00 4.04
623 628 6.978080 TGAACCTTTTTAGTGTTGCATTTCTC 59.022 34.615 0.00 0.00 0.00 2.87
624 629 6.872920 TGAACCTTTTTAGTGTTGCATTTCT 58.127 32.000 0.00 0.00 0.00 2.52
625 630 7.437862 TCATGAACCTTTTTAGTGTTGCATTTC 59.562 33.333 0.00 0.00 0.00 2.17
626 631 7.271511 TCATGAACCTTTTTAGTGTTGCATTT 58.728 30.769 0.00 0.00 0.00 2.32
627 632 6.815089 TCATGAACCTTTTTAGTGTTGCATT 58.185 32.000 0.00 0.00 0.00 3.56
628 633 6.403866 TCATGAACCTTTTTAGTGTTGCAT 57.596 33.333 0.00 0.00 0.00 3.96
629 634 5.843673 TCATGAACCTTTTTAGTGTTGCA 57.156 34.783 0.00 0.00 0.00 4.08
630 635 7.307337 CCAAATCATGAACCTTTTTAGTGTTGC 60.307 37.037 0.00 0.00 0.00 4.17
631 636 7.925483 TCCAAATCATGAACCTTTTTAGTGTTG 59.075 33.333 0.00 0.00 0.00 3.33
632 637 7.926018 GTCCAAATCATGAACCTTTTTAGTGTT 59.074 33.333 0.00 0.00 0.00 3.32
633 638 7.433680 GTCCAAATCATGAACCTTTTTAGTGT 58.566 34.615 0.00 0.00 0.00 3.55
634 639 6.582295 CGTCCAAATCATGAACCTTTTTAGTG 59.418 38.462 0.00 0.00 0.00 2.74
635 640 6.677913 CGTCCAAATCATGAACCTTTTTAGT 58.322 36.000 0.00 0.00 0.00 2.24
636 641 5.572896 GCGTCCAAATCATGAACCTTTTTAG 59.427 40.000 0.00 0.00 0.00 1.85
637 642 5.010112 TGCGTCCAAATCATGAACCTTTTTA 59.990 36.000 0.00 0.00 0.00 1.52
638 643 4.202202 TGCGTCCAAATCATGAACCTTTTT 60.202 37.500 0.00 0.00 0.00 1.94
639 644 3.320541 TGCGTCCAAATCATGAACCTTTT 59.679 39.130 0.00 0.00 0.00 2.27
640 645 2.890311 TGCGTCCAAATCATGAACCTTT 59.110 40.909 0.00 0.00 0.00 3.11
641 646 2.228822 GTGCGTCCAAATCATGAACCTT 59.771 45.455 0.00 0.00 0.00 3.50
642 647 1.812571 GTGCGTCCAAATCATGAACCT 59.187 47.619 0.00 0.00 0.00 3.50
643 648 1.539388 TGTGCGTCCAAATCATGAACC 59.461 47.619 0.00 0.00 0.00 3.62
644 649 2.987413 TGTGCGTCCAAATCATGAAC 57.013 45.000 0.00 0.00 0.00 3.18
645 650 3.998099 TTTGTGCGTCCAAATCATGAA 57.002 38.095 0.00 0.00 29.67 2.57
646 651 5.635417 TTATTTGTGCGTCCAAATCATGA 57.365 34.783 14.82 0.00 42.49 3.07
647 652 6.145209 TGTTTTATTTGTGCGTCCAAATCATG 59.855 34.615 14.82 0.00 42.49 3.07
648 653 6.219473 TGTTTTATTTGTGCGTCCAAATCAT 58.781 32.000 14.82 0.22 42.49 2.45
649 654 5.592054 TGTTTTATTTGTGCGTCCAAATCA 58.408 33.333 14.82 5.17 42.49 2.57
650 655 6.704512 ATGTTTTATTTGTGCGTCCAAATC 57.295 33.333 14.82 5.17 42.49 2.17
651 656 7.489574 AAATGTTTTATTTGTGCGTCCAAAT 57.510 28.000 15.45 15.45 44.81 2.32
652 657 6.910536 AAATGTTTTATTTGTGCGTCCAAA 57.089 29.167 4.50 4.50 38.58 3.28
653 658 6.535150 TCAAAATGTTTTATTTGTGCGTCCAA 59.465 30.769 0.00 0.00 37.68 3.53
654 659 6.042777 TCAAAATGTTTTATTTGTGCGTCCA 58.957 32.000 0.00 0.00 37.68 4.02
655 660 6.517914 TCAAAATGTTTTATTTGTGCGTCC 57.482 33.333 0.00 0.00 37.68 4.79
656 661 8.720586 GTTTTCAAAATGTTTTATTTGTGCGTC 58.279 29.630 0.00 0.00 37.68 5.19
657 662 8.447053 AGTTTTCAAAATGTTTTATTTGTGCGT 58.553 25.926 0.00 0.00 37.68 5.24
658 663 8.819152 AGTTTTCAAAATGTTTTATTTGTGCG 57.181 26.923 0.00 0.00 37.68 5.34
659 664 9.986833 AGAGTTTTCAAAATGTTTTATTTGTGC 57.013 25.926 0.00 0.00 37.68 4.57
673 678 9.751542 TGTGTTTTTCTTGTAGAGTTTTCAAAA 57.248 25.926 0.00 0.00 0.00 2.44
674 679 9.751542 TTGTGTTTTTCTTGTAGAGTTTTCAAA 57.248 25.926 0.00 0.00 0.00 2.69
675 680 9.751542 TTTGTGTTTTTCTTGTAGAGTTTTCAA 57.248 25.926 0.00 0.00 0.00 2.69
676 681 9.751542 TTTTGTGTTTTTCTTGTAGAGTTTTCA 57.248 25.926 0.00 0.00 0.00 2.69
678 683 9.758651 AGTTTTGTGTTTTTCTTGTAGAGTTTT 57.241 25.926 0.00 0.00 0.00 2.43
679 684 9.758651 AAGTTTTGTGTTTTTCTTGTAGAGTTT 57.241 25.926 0.00 0.00 0.00 2.66
680 685 9.406828 GAAGTTTTGTGTTTTTCTTGTAGAGTT 57.593 29.630 0.00 0.00 0.00 3.01
681 686 8.573035 TGAAGTTTTGTGTTTTTCTTGTAGAGT 58.427 29.630 0.00 0.00 0.00 3.24
682 687 8.850452 GTGAAGTTTTGTGTTTTTCTTGTAGAG 58.150 33.333 0.00 0.00 0.00 2.43
683 688 7.535940 CGTGAAGTTTTGTGTTTTTCTTGTAGA 59.464 33.333 0.00 0.00 0.00 2.59
684 689 7.201316 CCGTGAAGTTTTGTGTTTTTCTTGTAG 60.201 37.037 0.00 0.00 0.00 2.74
685 690 6.583050 CCGTGAAGTTTTGTGTTTTTCTTGTA 59.417 34.615 0.00 0.00 0.00 2.41
686 691 5.404066 CCGTGAAGTTTTGTGTTTTTCTTGT 59.596 36.000 0.00 0.00 0.00 3.16
687 692 5.404066 ACCGTGAAGTTTTGTGTTTTTCTTG 59.596 36.000 0.00 0.00 0.00 3.02
688 693 5.534407 ACCGTGAAGTTTTGTGTTTTTCTT 58.466 33.333 0.00 0.00 0.00 2.52
689 694 5.128992 ACCGTGAAGTTTTGTGTTTTTCT 57.871 34.783 0.00 0.00 0.00 2.52
690 695 5.832568 AACCGTGAAGTTTTGTGTTTTTC 57.167 34.783 0.00 0.00 0.00 2.29
691 696 5.342791 CGTAACCGTGAAGTTTTGTGTTTTT 59.657 36.000 0.00 0.00 0.00 1.94
692 697 4.852650 CGTAACCGTGAAGTTTTGTGTTTT 59.147 37.500 0.00 0.00 0.00 2.43
693 698 4.153835 TCGTAACCGTGAAGTTTTGTGTTT 59.846 37.500 0.00 0.00 35.01 2.83
694 699 3.683822 TCGTAACCGTGAAGTTTTGTGTT 59.316 39.130 0.00 0.00 35.01 3.32
695 700 3.062504 GTCGTAACCGTGAAGTTTTGTGT 59.937 43.478 0.00 0.00 35.01 3.72
696 701 3.062369 TGTCGTAACCGTGAAGTTTTGTG 59.938 43.478 0.00 0.00 35.01 3.33
697 702 3.260740 TGTCGTAACCGTGAAGTTTTGT 58.739 40.909 0.00 0.00 35.01 2.83
698 703 3.929417 TGTCGTAACCGTGAAGTTTTG 57.071 42.857 0.00 0.00 35.01 2.44
699 704 4.943142 TTTGTCGTAACCGTGAAGTTTT 57.057 36.364 0.00 0.00 35.01 2.43
700 705 4.943142 TTTTGTCGTAACCGTGAAGTTT 57.057 36.364 0.00 0.00 35.01 2.66
701 706 4.571580 TCATTTTGTCGTAACCGTGAAGTT 59.428 37.500 0.00 0.00 35.01 2.66
702 707 4.121317 TCATTTTGTCGTAACCGTGAAGT 58.879 39.130 0.00 0.00 35.01 3.01
703 708 4.210537 ACTCATTTTGTCGTAACCGTGAAG 59.789 41.667 0.00 0.00 35.01 3.02
704 709 4.025563 CACTCATTTTGTCGTAACCGTGAA 60.026 41.667 0.00 0.00 35.01 3.18
705 710 3.491639 CACTCATTTTGTCGTAACCGTGA 59.508 43.478 0.00 0.00 35.01 4.35
706 711 3.794536 CACTCATTTTGTCGTAACCGTG 58.205 45.455 0.00 0.00 35.01 4.94
707 712 2.222445 GCACTCATTTTGTCGTAACCGT 59.778 45.455 0.00 0.00 35.01 4.83
708 713 2.222213 TGCACTCATTTTGTCGTAACCG 59.778 45.455 0.00 0.00 0.00 4.44
709 714 3.551551 GTGCACTCATTTTGTCGTAACC 58.448 45.455 10.32 0.00 0.00 2.85
710 715 3.002862 TGGTGCACTCATTTTGTCGTAAC 59.997 43.478 17.98 0.00 0.00 2.50
711 716 3.002862 GTGGTGCACTCATTTTGTCGTAA 59.997 43.478 17.98 0.00 0.00 3.18
712 717 2.546368 GTGGTGCACTCATTTTGTCGTA 59.454 45.455 17.98 0.00 0.00 3.43
713 718 1.333619 GTGGTGCACTCATTTTGTCGT 59.666 47.619 17.98 0.00 0.00 4.34
714 719 1.603802 AGTGGTGCACTCATTTTGTCG 59.396 47.619 17.98 0.00 41.21 4.35
715 720 3.550842 GGAAGTGGTGCACTCATTTTGTC 60.551 47.826 17.98 4.95 44.62 3.18
716 721 2.362077 GGAAGTGGTGCACTCATTTTGT 59.638 45.455 17.98 0.00 44.62 2.83
717 722 2.361757 TGGAAGTGGTGCACTCATTTTG 59.638 45.455 17.98 0.00 44.62 2.44
718 723 2.362077 GTGGAAGTGGTGCACTCATTTT 59.638 45.455 17.98 11.21 44.62 1.82
719 724 1.956477 GTGGAAGTGGTGCACTCATTT 59.044 47.619 17.98 15.13 44.62 2.32
720 725 1.609208 GTGGAAGTGGTGCACTCATT 58.391 50.000 17.98 8.68 44.62 2.57
721 726 3.329300 GTGGAAGTGGTGCACTCAT 57.671 52.632 17.98 3.40 44.62 2.90
722 727 4.876701 GTGGAAGTGGTGCACTCA 57.123 55.556 17.98 10.37 44.62 3.41
726 731 0.813610 CGACAAGTGGAAGTGGTGCA 60.814 55.000 0.00 0.00 0.00 4.57
727 732 1.941812 CGACAAGTGGAAGTGGTGC 59.058 57.895 0.00 0.00 0.00 5.01
728 733 1.507141 GGCGACAAGTGGAAGTGGTG 61.507 60.000 0.00 0.00 0.00 4.17
729 734 1.227853 GGCGACAAGTGGAAGTGGT 60.228 57.895 0.00 0.00 0.00 4.16
730 735 1.227823 TGGCGACAAGTGGAAGTGG 60.228 57.895 0.00 0.00 37.44 4.00
731 736 4.454948 TGGCGACAAGTGGAAGTG 57.545 55.556 0.00 0.00 37.44 3.16
742 747 5.506317 CCCATTTTCTTTCTATGATGGCGAC 60.506 44.000 0.00 0.00 34.19 5.19
743 748 4.580167 CCCATTTTCTTTCTATGATGGCGA 59.420 41.667 0.00 0.00 34.19 5.54
744 749 4.580167 TCCCATTTTCTTTCTATGATGGCG 59.420 41.667 0.00 0.00 34.19 5.69
745 750 5.595952 ACTCCCATTTTCTTTCTATGATGGC 59.404 40.000 0.00 0.00 34.19 4.40
746 751 6.830324 TCACTCCCATTTTCTTTCTATGATGG 59.170 38.462 0.00 0.00 35.06 3.51
747 752 7.201767 GGTCACTCCCATTTTCTTTCTATGATG 60.202 40.741 0.00 0.00 0.00 3.07
748 753 6.830838 GGTCACTCCCATTTTCTTTCTATGAT 59.169 38.462 0.00 0.00 0.00 2.45
749 754 6.012508 AGGTCACTCCCATTTTCTTTCTATGA 60.013 38.462 0.00 0.00 36.75 2.15
750 755 6.183347 AGGTCACTCCCATTTTCTTTCTATG 58.817 40.000 0.00 0.00 36.75 2.23
751 756 6.394345 AGGTCACTCCCATTTTCTTTCTAT 57.606 37.500 0.00 0.00 36.75 1.98
752 757 5.843019 AGGTCACTCCCATTTTCTTTCTA 57.157 39.130 0.00 0.00 36.75 2.10
753 758 4.731313 AGGTCACTCCCATTTTCTTTCT 57.269 40.909 0.00 0.00 36.75 2.52
754 759 4.559502 GCAAGGTCACTCCCATTTTCTTTC 60.560 45.833 0.00 0.00 36.75 2.62
755 760 3.321968 GCAAGGTCACTCCCATTTTCTTT 59.678 43.478 0.00 0.00 36.75 2.52
756 761 2.893489 GCAAGGTCACTCCCATTTTCTT 59.107 45.455 0.00 0.00 36.75 2.52
757 762 2.158475 TGCAAGGTCACTCCCATTTTCT 60.158 45.455 0.00 0.00 36.75 2.52
758 763 2.029918 GTGCAAGGTCACTCCCATTTTC 60.030 50.000 0.00 0.00 36.75 2.29
759 764 1.963515 GTGCAAGGTCACTCCCATTTT 59.036 47.619 0.00 0.00 36.75 1.82
760 765 1.620822 GTGCAAGGTCACTCCCATTT 58.379 50.000 0.00 0.00 36.75 2.32
761 766 0.251341 GGTGCAAGGTCACTCCCATT 60.251 55.000 0.00 0.00 37.16 3.16
762 767 1.136329 AGGTGCAAGGTCACTCCCAT 61.136 55.000 0.00 0.00 37.16 4.00
763 768 1.352622 AAGGTGCAAGGTCACTCCCA 61.353 55.000 0.00 0.00 37.16 4.37
764 769 0.178990 AAAGGTGCAAGGTCACTCCC 60.179 55.000 0.00 0.00 37.16 4.30
765 770 0.954452 CAAAGGTGCAAGGTCACTCC 59.046 55.000 0.00 0.00 37.16 3.85
780 785 1.995376 AAGGTGTACCCCTTGCAAAG 58.005 50.000 9.03 0.00 43.26 2.77
781 786 3.224269 GTTAAGGTGTACCCCTTGCAAA 58.776 45.455 18.81 3.52 44.57 3.68
782 787 2.489437 GGTTAAGGTGTACCCCTTGCAA 60.489 50.000 18.81 4.23 44.57 4.08
783 788 1.074244 GGTTAAGGTGTACCCCTTGCA 59.926 52.381 18.81 3.58 44.57 4.08
784 789 1.830279 GGTTAAGGTGTACCCCTTGC 58.170 55.000 18.81 11.35 44.57 4.01
785 790 1.624813 TCGGTTAAGGTGTACCCCTTG 59.375 52.381 18.81 3.15 44.57 3.61
786 791 2.028561 TCGGTTAAGGTGTACCCCTT 57.971 50.000 14.41 14.41 46.54 3.95
787 792 1.835531 CATCGGTTAAGGTGTACCCCT 59.164 52.381 0.00 0.00 36.42 4.79
788 793 1.832998 TCATCGGTTAAGGTGTACCCC 59.167 52.381 0.00 0.00 36.42 4.95
789 794 3.832615 ATCATCGGTTAAGGTGTACCC 57.167 47.619 0.00 0.00 36.42 3.69
790 795 5.644636 TCAAAATCATCGGTTAAGGTGTACC 59.355 40.000 0.00 0.00 0.00 3.34
791 796 6.540205 GTCAAAATCATCGGTTAAGGTGTAC 58.460 40.000 0.00 0.00 0.00 2.90
792 797 5.349270 CGTCAAAATCATCGGTTAAGGTGTA 59.651 40.000 0.00 0.00 0.00 2.90
793 798 4.153475 CGTCAAAATCATCGGTTAAGGTGT 59.847 41.667 0.00 0.00 0.00 4.16
794 799 4.436852 CCGTCAAAATCATCGGTTAAGGTG 60.437 45.833 0.00 0.00 38.45 4.00
795 800 3.687698 CCGTCAAAATCATCGGTTAAGGT 59.312 43.478 0.00 0.00 38.45 3.50
796 801 3.936453 TCCGTCAAAATCATCGGTTAAGG 59.064 43.478 0.00 0.00 42.95 2.69
797 802 4.630069 ACTCCGTCAAAATCATCGGTTAAG 59.370 41.667 0.00 0.00 42.95 1.85
798 803 4.571919 ACTCCGTCAAAATCATCGGTTAA 58.428 39.130 0.00 0.00 42.95 2.01
799 804 4.196626 ACTCCGTCAAAATCATCGGTTA 57.803 40.909 0.00 0.00 42.95 2.85
800 805 3.053831 ACTCCGTCAAAATCATCGGTT 57.946 42.857 0.00 0.00 42.95 4.44
801 806 2.742053 CAACTCCGTCAAAATCATCGGT 59.258 45.455 0.00 0.00 42.95 4.69
802 807 2.095853 CCAACTCCGTCAAAATCATCGG 59.904 50.000 0.00 0.00 43.65 4.18
803 808 3.000041 TCCAACTCCGTCAAAATCATCG 59.000 45.455 0.00 0.00 0.00 3.84
804 809 4.635765 TGATCCAACTCCGTCAAAATCATC 59.364 41.667 0.00 0.00 0.00 2.92
805 810 4.588899 TGATCCAACTCCGTCAAAATCAT 58.411 39.130 0.00 0.00 0.00 2.45
806 811 4.014569 TGATCCAACTCCGTCAAAATCA 57.985 40.909 0.00 0.00 0.00 2.57
807 812 4.723248 GTTGATCCAACTCCGTCAAAATC 58.277 43.478 2.85 0.00 40.73 2.17
808 813 4.766404 GTTGATCCAACTCCGTCAAAAT 57.234 40.909 2.85 0.00 40.73 1.82
822 827 1.851304 TTGGCCATGGAAGTTGATCC 58.149 50.000 18.40 4.72 40.10 3.36
823 828 3.025978 TCATTGGCCATGGAAGTTGATC 58.974 45.455 18.40 0.00 33.07 2.92
824 829 3.104519 TCATTGGCCATGGAAGTTGAT 57.895 42.857 18.40 0.00 33.07 2.57
825 830 2.601240 TCATTGGCCATGGAAGTTGA 57.399 45.000 18.40 9.78 33.07 3.18
826 831 3.196039 TCAATCATTGGCCATGGAAGTTG 59.804 43.478 18.40 9.90 33.07 3.16
827 832 3.443052 TCAATCATTGGCCATGGAAGTT 58.557 40.909 18.40 0.00 33.07 2.66
828 833 3.104519 TCAATCATTGGCCATGGAAGT 57.895 42.857 18.40 0.00 33.07 3.01
829 834 4.475051 TTTCAATCATTGGCCATGGAAG 57.525 40.909 18.40 5.03 33.07 3.46
830 835 5.453621 GCTATTTCAATCATTGGCCATGGAA 60.454 40.000 18.40 2.07 33.07 3.53
831 836 4.039488 GCTATTTCAATCATTGGCCATGGA 59.961 41.667 18.40 7.96 33.07 3.41
832 837 4.202274 TGCTATTTCAATCATTGGCCATGG 60.202 41.667 6.09 7.63 33.07 3.66
833 838 4.951254 TGCTATTTCAATCATTGGCCATG 58.049 39.130 6.09 7.61 0.00 3.66
834 839 4.652421 ACTGCTATTTCAATCATTGGCCAT 59.348 37.500 6.09 0.00 0.00 4.40
835 840 4.025360 ACTGCTATTTCAATCATTGGCCA 58.975 39.130 0.00 0.00 0.00 5.36
836 841 4.660789 ACTGCTATTTCAATCATTGGCC 57.339 40.909 0.00 0.00 0.00 5.36
837 842 5.220529 GCAAACTGCTATTTCAATCATTGGC 60.221 40.000 0.00 0.00 40.96 4.52
838 843 6.340537 GCAAACTGCTATTTCAATCATTGG 57.659 37.500 0.00 0.00 40.96 3.16
853 858 3.923017 AAGACACCATTAGCAAACTGC 57.077 42.857 0.00 0.00 45.46 4.40
854 859 4.278170 TCCAAAGACACCATTAGCAAACTG 59.722 41.667 0.00 0.00 0.00 3.16
855 860 4.469657 TCCAAAGACACCATTAGCAAACT 58.530 39.130 0.00 0.00 0.00 2.66
856 861 4.846779 TCCAAAGACACCATTAGCAAAC 57.153 40.909 0.00 0.00 0.00 2.93
857 862 4.280677 CCTTCCAAAGACACCATTAGCAAA 59.719 41.667 0.00 0.00 0.00 3.68
858 863 3.826157 CCTTCCAAAGACACCATTAGCAA 59.174 43.478 0.00 0.00 0.00 3.91
859 864 3.420893 CCTTCCAAAGACACCATTAGCA 58.579 45.455 0.00 0.00 0.00 3.49
860 865 2.164422 GCCTTCCAAAGACACCATTAGC 59.836 50.000 0.00 0.00 0.00 3.09
861 866 3.690460 AGCCTTCCAAAGACACCATTAG 58.310 45.455 0.00 0.00 0.00 1.73
862 867 3.806949 AGCCTTCCAAAGACACCATTA 57.193 42.857 0.00 0.00 0.00 1.90
863 868 2.683211 AGCCTTCCAAAGACACCATT 57.317 45.000 0.00 0.00 0.00 3.16
941 949 3.782523 AGAATCAGAGGACAAGGCCATAA 59.217 43.478 5.01 0.00 0.00 1.90
1690 2823 1.377229 CAAACTGGGGGTTCGGCTA 59.623 57.895 0.00 0.00 37.12 3.93
1695 2828 4.976864 TCTTACTAACAAACTGGGGGTTC 58.023 43.478 0.00 0.00 37.12 3.62
1786 2936 9.913310 TGGTGAACATATATAAGTTTTCATGGA 57.087 29.630 4.93 0.00 0.00 3.41
1794 2944 9.006839 CATGCTCATGGTGAACATATATAAGTT 57.993 33.333 3.08 3.08 37.84 2.66
1803 2953 3.076079 TCACATGCTCATGGTGAACAT 57.924 42.857 13.69 0.00 42.91 2.71
1804 2954 2.565046 TCACATGCTCATGGTGAACA 57.435 45.000 13.69 0.00 42.91 3.18
1813 2963 5.180367 TCAAACGATTTTTCACATGCTCA 57.820 34.783 0.00 0.00 0.00 4.26
1829 2979 8.372521 GCCTACAAATCACAATATTTTCAAACG 58.627 33.333 0.00 0.00 0.00 3.60
1866 3016 7.503521 TTTTTGTTATTGGGCAGAAATTTCC 57.496 32.000 14.61 0.56 0.00 3.13
1928 3078 6.680874 ATACTTTCACACGTGGTGTAAAAA 57.319 33.333 21.57 10.70 45.65 1.94
1931 3081 7.966246 AATTATACTTTCACACGTGGTGTAA 57.034 32.000 21.57 15.35 45.65 2.41
1935 3085 8.611654 ACTAAAATTATACTTTCACACGTGGT 57.388 30.769 21.57 10.03 0.00 4.16
2010 3162 6.582437 AAACAGCGTGAAAATTTTCGATTT 57.418 29.167 22.51 13.95 40.01 2.17
2057 3213 7.190920 CTTTGTTAATTCAAAGTCGGACTCT 57.809 36.000 11.71 0.00 45.08 3.24
2123 3279 6.575162 ATCTGTATTTCCGCTCTTTGTTTT 57.425 33.333 0.00 0.00 0.00 2.43
2190 3361 5.557866 CCTTAGTAGGTTAGCTGGTTTTGT 58.442 41.667 0.00 0.00 36.74 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.