Multiple sequence alignment - TraesCS5B01G093100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G093100 chr5B 100.000 4666 0 0 1 4666 122420120 122424785 0.000000e+00 8617.0
1 TraesCS5B01G093100 chr5B 85.268 224 24 4 2122 2340 127222215 127221996 6.080000e-54 222.0
2 TraesCS5B01G093100 chr5B 100.000 30 0 0 652 681 122420740 122420769 6.520000e-04 56.5
3 TraesCS5B01G093100 chr5B 100.000 30 0 0 621 650 122420771 122420800 6.520000e-04 56.5
4 TraesCS5B01G093100 chr5D 93.567 3109 121 43 761 3818 110381930 110378850 0.000000e+00 4560.0
5 TraesCS5B01G093100 chr5D 96.604 854 25 2 3817 4666 110378768 110377915 0.000000e+00 1413.0
6 TraesCS5B01G093100 chr5D 86.161 224 25 3 2122 2340 115648679 115648457 2.170000e-58 237.0
7 TraesCS5B01G093100 chr5A 95.695 2416 79 13 2262 4666 116572346 116574747 0.000000e+00 3862.0
8 TraesCS5B01G093100 chr5A 92.489 1531 49 22 763 2245 116570784 116572296 0.000000e+00 2130.0
9 TraesCS5B01G093100 chr5A 86.099 223 23 3 2122 2339 122341484 122341265 2.810000e-57 233.0
10 TraesCS5B01G093100 chr7B 85.888 659 65 16 1 650 605369778 605370417 0.000000e+00 676.0
11 TraesCS5B01G093100 chr7B 90.438 251 21 3 240 489 512700584 512700832 1.250000e-85 327.0
12 TraesCS5B01G093100 chr7B 89.362 235 19 3 1 229 456616084 456616318 1.640000e-74 291.0
13 TraesCS5B01G093100 chr7B 95.082 61 3 0 705 765 512700956 512701016 3.840000e-16 97.1
14 TraesCS5B01G093100 chr3A 87.097 310 33 6 240 542 698539246 698539555 1.240000e-90 344.0
15 TraesCS5B01G093100 chr3A 90.062 161 12 2 491 650 698539539 698539696 6.120000e-49 206.0
16 TraesCS5B01G093100 chr6D 89.516 248 23 3 1 246 38534145 38533899 1.260000e-80 311.0
17 TraesCS5B01G093100 chr6D 82.331 266 22 14 240 482 115321887 115321624 1.700000e-49 207.0
18 TraesCS5B01G093100 chr7D 89.200 250 23 3 1 246 2510646 2510895 4.530000e-80 309.0
19 TraesCS5B01G093100 chr7D 89.157 249 23 4 1 246 45055060 45055307 1.630000e-79 307.0
20 TraesCS5B01G093100 chr7D 81.250 144 18 8 2069 2208 544476376 544476238 1.780000e-19 108.0
21 TraesCS5B01G093100 chr2B 86.508 252 26 6 1 247 796841377 796841625 2.140000e-68 270.0
22 TraesCS5B01G093100 chr2B 85.542 249 33 3 1 247 448143313 448143560 1.670000e-64 257.0
23 TraesCS5B01G093100 chr3B 87.288 236 23 5 1 229 89358786 89359021 3.580000e-66 263.0
24 TraesCS5B01G093100 chr4B 85.200 250 31 5 2 247 610834028 610834275 7.750000e-63 252.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G093100 chr5B 122420120 122424785 4665 False 8617.0 8617 100.0000 1 4666 1 chr5B.!!$F1 4665
1 TraesCS5B01G093100 chr5D 110377915 110381930 4015 True 2986.5 4560 95.0855 761 4666 2 chr5D.!!$R2 3905
2 TraesCS5B01G093100 chr5A 116570784 116574747 3963 False 2996.0 3862 94.0920 763 4666 2 chr5A.!!$F1 3903
3 TraesCS5B01G093100 chr7B 605369778 605370417 639 False 676.0 676 85.8880 1 650 1 chr7B.!!$F2 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
304 306 0.036765 GGTTGTAGCATGGACGGACA 60.037 55.0 0.00 0.0 0.00 4.02 F
310 312 0.108585 AGCATGGACGGACACTGTTT 59.891 50.0 0.00 0.0 0.00 2.83 F
664 666 0.108898 CGCAGTGAGGAGTCCAGAAG 60.109 60.0 12.86 0.0 0.00 2.85 F
702 704 0.165079 AATAAAGGCGCGTGTGAACG 59.835 50.0 8.43 0.0 0.00 3.95 F
1478 1510 0.318699 TCCAAGACGCACGAGTTCTG 60.319 55.0 0.00 0.0 0.00 3.02 F
2924 3134 0.246635 ACTGCTATCCGCTTCAACGT 59.753 50.0 0.00 0.0 40.11 3.99 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1435 1465 1.001974 TGCTGCGTGGAGTAGAATGTT 59.998 47.619 0.00 0.0 34.21 2.71 R
1607 1649 1.577328 ATGAGCCAAAACCGCACGAG 61.577 55.000 0.00 0.0 0.00 4.18 R
2511 2718 1.402852 CGCGATGTTCTTGGAGTGAGA 60.403 52.381 0.00 0.0 0.00 3.27 R
2639 2846 5.047377 ACAATTAAGGTTTTGATGATGCCGT 60.047 36.000 0.00 0.0 0.00 5.68 R
3374 3587 0.396974 AAGCAGGGTCCAGCAAACAA 60.397 50.000 7.13 0.0 0.00 2.83 R
4342 4645 0.596082 TTTCAGCCGCTAAAACTGCC 59.404 50.000 0.00 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.791245 TGGAACCAAAAGCATGAAACAC 58.209 40.909 0.00 0.00 0.00 3.32
33 34 0.394488 TGAAACACCGGTTCCAGCAA 60.394 50.000 2.97 0.00 35.82 3.91
44 45 4.165779 CGGTTCCAGCAAAAACATGATAC 58.834 43.478 0.00 0.00 0.00 2.24
67 68 1.029681 GGAAGCAAAACCGAACACCT 58.970 50.000 0.00 0.00 0.00 4.00
84 85 3.196463 CACCTGTTGCAGCAAAATCAAA 58.804 40.909 10.11 0.00 0.00 2.69
88 89 3.257393 TGTTGCAGCAAAATCAAAACGT 58.743 36.364 10.11 0.00 0.00 3.99
131 133 2.426522 TCCAGCAAAATCCGAAGACAG 58.573 47.619 0.00 0.00 0.00 3.51
160 162 3.762407 AAAAATGGGGTTGGTTGTAGC 57.238 42.857 0.00 0.00 0.00 3.58
161 163 2.390225 AAATGGGGTTGGTTGTAGCA 57.610 45.000 0.00 0.00 0.00 3.49
162 164 2.390225 AATGGGGTTGGTTGTAGCAA 57.610 45.000 0.00 0.00 32.60 3.91
163 165 2.390225 ATGGGGTTGGTTGTAGCAAA 57.610 45.000 0.00 0.00 37.34 3.68
164 166 2.160721 TGGGGTTGGTTGTAGCAAAA 57.839 45.000 0.00 0.00 37.34 2.44
165 167 2.467880 TGGGGTTGGTTGTAGCAAAAA 58.532 42.857 0.00 0.00 37.34 1.94
166 168 2.168728 TGGGGTTGGTTGTAGCAAAAAC 59.831 45.455 0.00 0.00 37.34 2.43
167 169 2.484065 GGGGTTGGTTGTAGCAAAAACC 60.484 50.000 14.40 14.40 45.11 3.27
174 176 3.868661 GGTTGTAGCAAAAACCAAACTGG 59.131 43.478 8.98 0.00 44.41 4.00
183 185 4.736165 CCAAACTGGTTGCAGCAC 57.264 55.556 2.05 0.00 35.74 4.40
184 186 1.067916 CCAAACTGGTTGCAGCACC 59.932 57.895 2.05 1.07 35.74 5.01
185 187 1.674764 CCAAACTGGTTGCAGCACCA 61.675 55.000 9.86 9.86 45.13 4.17
186 188 0.528249 CAAACTGGTTGCAGCACCAC 60.528 55.000 6.14 1.00 42.27 4.16
187 189 1.675720 AAACTGGTTGCAGCACCACC 61.676 55.000 6.14 9.11 42.27 4.61
188 190 3.663176 CTGGTTGCAGCACCACCG 61.663 66.667 6.14 3.49 42.27 4.94
189 191 4.497984 TGGTTGCAGCACCACCGT 62.498 61.111 6.14 0.00 42.27 4.83
190 192 3.660111 GGTTGCAGCACCACCGTC 61.660 66.667 2.05 0.00 36.73 4.79
191 193 4.012895 GTTGCAGCACCACCGTCG 62.013 66.667 0.00 0.00 0.00 5.12
201 203 4.487412 CACCGTCGGGCCGTAGTC 62.487 72.222 27.32 13.59 36.48 2.59
203 205 4.487412 CCGTCGGGCCGTAGTCAC 62.487 72.222 27.32 15.29 0.00 3.67
204 206 4.487412 CGTCGGGCCGTAGTCACC 62.487 72.222 27.32 5.33 0.00 4.02
205 207 3.376078 GTCGGGCCGTAGTCACCA 61.376 66.667 27.32 0.00 0.00 4.17
206 208 3.376078 TCGGGCCGTAGTCACCAC 61.376 66.667 27.32 0.00 0.00 4.16
207 209 3.379445 CGGGCCGTAGTCACCACT 61.379 66.667 19.97 0.00 36.55 4.00
208 210 2.264794 GGGCCGTAGTCACCACTG 59.735 66.667 0.00 0.00 33.62 3.66
209 211 2.580601 GGGCCGTAGTCACCACTGT 61.581 63.158 0.00 0.00 33.62 3.55
210 212 1.080025 GGCCGTAGTCACCACTGTC 60.080 63.158 0.00 0.00 33.62 3.51
211 213 1.443872 GCCGTAGTCACCACTGTCG 60.444 63.158 0.00 0.00 33.62 4.35
212 214 1.211969 CCGTAGTCACCACTGTCGG 59.788 63.158 6.32 6.32 41.54 4.79
213 215 1.211969 CGTAGTCACCACTGTCGGG 59.788 63.158 2.24 0.00 33.62 5.14
214 216 1.080025 GTAGTCACCACTGTCGGGC 60.080 63.158 2.24 0.00 33.62 6.13
215 217 1.228769 TAGTCACCACTGTCGGGCT 60.229 57.895 2.24 0.00 33.62 5.19
216 218 1.532604 TAGTCACCACTGTCGGGCTG 61.533 60.000 0.00 0.00 33.62 4.85
217 219 2.842462 TCACCACTGTCGGGCTGT 60.842 61.111 0.00 0.00 0.00 4.40
218 220 2.666190 CACCACTGTCGGGCTGTG 60.666 66.667 12.07 12.07 43.79 3.66
221 223 2.357517 CACTGTCGGGCTGTGGTC 60.358 66.667 11.29 0.00 41.50 4.02
222 224 2.842462 ACTGTCGGGCTGTGGTCA 60.842 61.111 0.00 0.00 0.00 4.02
223 225 2.357517 CTGTCGGGCTGTGGTCAC 60.358 66.667 0.00 0.00 0.00 3.67
224 226 3.883744 CTGTCGGGCTGTGGTCACC 62.884 68.421 0.00 0.00 0.00 4.02
225 227 3.936203 GTCGGGCTGTGGTCACCA 61.936 66.667 0.00 0.00 0.00 4.17
250 252 4.740822 GGGATGGCCGCCACAGTT 62.741 66.667 16.16 0.00 35.80 3.16
251 253 3.134127 GGATGGCCGCCACAGTTC 61.134 66.667 16.16 8.31 35.80 3.01
252 254 2.359850 GATGGCCGCCACAGTTCA 60.360 61.111 16.16 0.00 35.80 3.18
253 255 2.672996 ATGGCCGCCACAGTTCAC 60.673 61.111 16.16 0.00 35.80 3.18
254 256 4.947147 TGGCCGCCACAGTTCACC 62.947 66.667 8.43 0.00 0.00 4.02
257 259 2.590575 CCGCCACAGTTCACCGTT 60.591 61.111 0.00 0.00 0.00 4.44
258 260 2.631428 CGCCACAGTTCACCGTTG 59.369 61.111 0.00 0.00 0.00 4.10
259 261 2.331451 GCCACAGTTCACCGTTGC 59.669 61.111 0.00 0.00 0.00 4.17
260 262 3.030652 CCACAGTTCACCGTTGCC 58.969 61.111 0.00 0.00 0.00 4.52
261 263 2.551912 CCACAGTTCACCGTTGCCC 61.552 63.158 0.00 0.00 0.00 5.36
262 264 2.203294 ACAGTTCACCGTTGCCCC 60.203 61.111 0.00 0.00 0.00 5.80
263 265 2.983592 CAGTTCACCGTTGCCCCC 60.984 66.667 0.00 0.00 0.00 5.40
279 281 1.470051 CCCCCTTGTAACAAATCCGG 58.530 55.000 0.00 0.00 0.00 5.14
280 282 1.272258 CCCCCTTGTAACAAATCCGGT 60.272 52.381 0.00 0.00 0.00 5.28
281 283 2.089201 CCCCTTGTAACAAATCCGGTC 58.911 52.381 0.00 0.00 0.00 4.79
282 284 1.735571 CCCTTGTAACAAATCCGGTCG 59.264 52.381 0.00 0.00 0.00 4.79
283 285 2.419667 CCTTGTAACAAATCCGGTCGT 58.580 47.619 0.00 0.00 0.00 4.34
284 286 2.414138 CCTTGTAACAAATCCGGTCGTC 59.586 50.000 0.00 0.00 0.00 4.20
285 287 1.700523 TGTAACAAATCCGGTCGTCG 58.299 50.000 0.00 0.00 38.88 5.12
294 296 2.256158 CGGTCGTCGGTTGTAGCA 59.744 61.111 0.00 0.00 34.75 3.49
295 297 1.153901 CGGTCGTCGGTTGTAGCAT 60.154 57.895 0.00 0.00 34.75 3.79
296 298 1.410737 CGGTCGTCGGTTGTAGCATG 61.411 60.000 0.00 0.00 34.75 4.06
297 299 1.082117 GGTCGTCGGTTGTAGCATGG 61.082 60.000 0.00 0.00 0.00 3.66
298 300 0.108992 GTCGTCGGTTGTAGCATGGA 60.109 55.000 0.00 0.00 0.00 3.41
299 301 0.108992 TCGTCGGTTGTAGCATGGAC 60.109 55.000 0.00 0.00 0.00 4.02
300 302 1.410737 CGTCGGTTGTAGCATGGACG 61.411 60.000 0.00 0.00 40.77 4.79
301 303 1.082117 GTCGGTTGTAGCATGGACGG 61.082 60.000 0.00 0.00 0.00 4.79
302 304 1.216977 CGGTTGTAGCATGGACGGA 59.783 57.895 0.00 0.00 0.00 4.69
303 305 1.082117 CGGTTGTAGCATGGACGGAC 61.082 60.000 0.00 0.00 0.00 4.79
304 306 0.036765 GGTTGTAGCATGGACGGACA 60.037 55.000 0.00 0.00 0.00 4.02
305 307 1.076332 GTTGTAGCATGGACGGACAC 58.924 55.000 0.00 0.00 0.00 3.67
306 308 0.973632 TTGTAGCATGGACGGACACT 59.026 50.000 0.00 0.00 0.00 3.55
307 309 0.246360 TGTAGCATGGACGGACACTG 59.754 55.000 0.00 0.00 0.00 3.66
308 310 0.246635 GTAGCATGGACGGACACTGT 59.753 55.000 0.00 0.00 0.00 3.55
309 311 0.973632 TAGCATGGACGGACACTGTT 59.026 50.000 0.00 0.00 0.00 3.16
310 312 0.108585 AGCATGGACGGACACTGTTT 59.891 50.000 0.00 0.00 0.00 2.83
311 313 0.238289 GCATGGACGGACACTGTTTG 59.762 55.000 0.00 0.00 0.00 2.93
312 314 1.593196 CATGGACGGACACTGTTTGT 58.407 50.000 0.00 0.00 43.10 2.83
313 315 2.761559 CATGGACGGACACTGTTTGTA 58.238 47.619 0.00 0.00 39.17 2.41
314 316 2.519377 TGGACGGACACTGTTTGTAG 57.481 50.000 0.00 0.00 39.17 2.74
315 317 1.145803 GGACGGACACTGTTTGTAGC 58.854 55.000 0.00 0.00 39.17 3.58
316 318 1.539496 GGACGGACACTGTTTGTAGCA 60.539 52.381 0.00 0.00 39.17 3.49
317 319 1.525619 GACGGACACTGTTTGTAGCAC 59.474 52.381 0.00 0.00 39.17 4.40
318 320 0.506932 CGGACACTGTTTGTAGCACG 59.493 55.000 0.00 0.00 39.17 5.34
319 321 0.865769 GGACACTGTTTGTAGCACGG 59.134 55.000 0.00 0.00 39.17 4.94
320 322 1.578583 GACACTGTTTGTAGCACGGT 58.421 50.000 0.00 0.00 39.17 4.83
321 323 1.937899 GACACTGTTTGTAGCACGGTT 59.062 47.619 0.00 0.00 39.17 4.44
322 324 1.668751 ACACTGTTTGTAGCACGGTTG 59.331 47.619 0.00 0.00 36.32 3.77
323 325 1.668751 CACTGTTTGTAGCACGGTTGT 59.331 47.619 0.00 0.00 30.92 3.32
324 326 5.020071 ACACTGTTTGTAGCACGGTTGTG 62.020 47.826 0.00 0.00 42.48 3.33
357 359 2.593376 CGAGTACGCCATGACCATG 58.407 57.895 0.00 3.11 38.51 3.66
377 379 4.639776 CGGAGGAGGACGAGAAGA 57.360 61.111 0.00 0.00 0.00 2.87
378 380 2.869636 CGGAGGAGGACGAGAAGAA 58.130 57.895 0.00 0.00 0.00 2.52
379 381 1.174783 CGGAGGAGGACGAGAAGAAA 58.825 55.000 0.00 0.00 0.00 2.52
380 382 1.544691 CGGAGGAGGACGAGAAGAAAA 59.455 52.381 0.00 0.00 0.00 2.29
381 383 2.416162 CGGAGGAGGACGAGAAGAAAAG 60.416 54.545 0.00 0.00 0.00 2.27
382 384 2.563620 GGAGGAGGACGAGAAGAAAAGT 59.436 50.000 0.00 0.00 0.00 2.66
383 385 3.580731 GAGGAGGACGAGAAGAAAAGTG 58.419 50.000 0.00 0.00 0.00 3.16
384 386 2.300437 AGGAGGACGAGAAGAAAAGTGG 59.700 50.000 0.00 0.00 0.00 4.00
385 387 2.037381 GGAGGACGAGAAGAAAAGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
386 388 3.060602 GAGGACGAGAAGAAAAGTGGTG 58.939 50.000 0.00 0.00 0.00 4.17
387 389 2.143925 GGACGAGAAGAAAAGTGGTGG 58.856 52.381 0.00 0.00 0.00 4.61
388 390 2.224209 GGACGAGAAGAAAAGTGGTGGA 60.224 50.000 0.00 0.00 0.00 4.02
389 391 2.801111 GACGAGAAGAAAAGTGGTGGAC 59.199 50.000 0.00 0.00 0.00 4.02
390 392 1.792949 CGAGAAGAAAAGTGGTGGACG 59.207 52.381 0.00 0.00 0.00 4.79
391 393 2.545113 CGAGAAGAAAAGTGGTGGACGA 60.545 50.000 0.00 0.00 0.00 4.20
392 394 2.801111 GAGAAGAAAAGTGGTGGACGAC 59.199 50.000 0.00 0.00 0.00 4.34
393 395 1.871676 GAAGAAAAGTGGTGGACGACC 59.128 52.381 0.00 0.00 46.37 4.79
423 425 4.379243 CAAGGAGCTCGCCGGTGT 62.379 66.667 16.01 0.00 0.00 4.16
424 426 4.070552 AAGGAGCTCGCCGGTGTC 62.071 66.667 16.01 5.14 0.00 3.67
430 432 4.477975 CTCGCCGGTGTCGACCTC 62.478 72.222 16.01 6.20 40.58 3.85
435 437 3.677648 CGGTGTCGACCTCCCGTT 61.678 66.667 22.80 0.00 40.58 4.44
436 438 2.260743 GGTGTCGACCTCCCGTTC 59.739 66.667 14.12 0.00 39.47 3.95
437 439 2.567497 GGTGTCGACCTCCCGTTCA 61.567 63.158 14.12 0.00 39.47 3.18
438 440 1.590147 GTGTCGACCTCCCGTTCAT 59.410 57.895 14.12 0.00 0.00 2.57
439 441 0.736325 GTGTCGACCTCCCGTTCATG 60.736 60.000 14.12 0.00 0.00 3.07
440 442 1.810030 GTCGACCTCCCGTTCATGC 60.810 63.158 3.51 0.00 0.00 4.06
441 443 1.982395 TCGACCTCCCGTTCATGCT 60.982 57.895 0.00 0.00 0.00 3.79
442 444 0.681887 TCGACCTCCCGTTCATGCTA 60.682 55.000 0.00 0.00 0.00 3.49
443 445 0.527817 CGACCTCCCGTTCATGCTAC 60.528 60.000 0.00 0.00 0.00 3.58
444 446 0.535335 GACCTCCCGTTCATGCTACA 59.465 55.000 0.00 0.00 0.00 2.74
445 447 0.981183 ACCTCCCGTTCATGCTACAA 59.019 50.000 0.00 0.00 0.00 2.41
446 448 1.066143 ACCTCCCGTTCATGCTACAAG 60.066 52.381 0.00 0.00 0.00 3.16
447 449 1.656652 CTCCCGTTCATGCTACAAGG 58.343 55.000 0.00 0.00 0.00 3.61
448 450 1.207089 CTCCCGTTCATGCTACAAGGA 59.793 52.381 0.00 0.00 0.00 3.36
449 451 1.207089 TCCCGTTCATGCTACAAGGAG 59.793 52.381 0.00 0.00 0.00 3.69
450 452 1.066143 CCCGTTCATGCTACAAGGAGT 60.066 52.381 0.00 0.00 0.00 3.85
451 453 2.271800 CCGTTCATGCTACAAGGAGTC 58.728 52.381 0.00 0.00 0.00 3.36
452 454 2.093973 CCGTTCATGCTACAAGGAGTCT 60.094 50.000 0.00 0.00 0.00 3.24
453 455 2.926200 CGTTCATGCTACAAGGAGTCTG 59.074 50.000 0.00 0.00 0.00 3.51
454 456 2.675348 GTTCATGCTACAAGGAGTCTGC 59.325 50.000 0.00 0.00 0.00 4.26
455 457 1.208052 TCATGCTACAAGGAGTCTGCC 59.792 52.381 0.00 0.00 0.00 4.85
456 458 0.543749 ATGCTACAAGGAGTCTGCCC 59.456 55.000 0.00 0.00 0.00 5.36
457 459 1.222113 GCTACAAGGAGTCTGCCCC 59.778 63.158 0.00 0.00 0.00 5.80
458 460 1.553690 GCTACAAGGAGTCTGCCCCA 61.554 60.000 0.00 0.00 0.00 4.96
459 461 0.984230 CTACAAGGAGTCTGCCCCAA 59.016 55.000 0.00 0.00 0.00 4.12
460 462 0.984230 TACAAGGAGTCTGCCCCAAG 59.016 55.000 0.00 0.00 0.00 3.61
461 463 1.001641 CAAGGAGTCTGCCCCAAGG 60.002 63.158 0.00 0.00 0.00 3.61
462 464 1.151810 AAGGAGTCTGCCCCAAGGA 60.152 57.895 0.00 0.00 33.47 3.36
463 465 1.204113 AAGGAGTCTGCCCCAAGGAG 61.204 60.000 0.00 0.00 33.47 3.69
464 466 2.270527 GAGTCTGCCCCAAGGAGC 59.729 66.667 0.00 0.00 33.47 4.70
465 467 2.204059 AGTCTGCCCCAAGGAGCT 60.204 61.111 0.00 0.00 33.47 4.09
466 468 1.846712 GAGTCTGCCCCAAGGAGCTT 61.847 60.000 0.00 0.00 33.47 3.74
467 469 1.676967 GTCTGCCCCAAGGAGCTTG 60.677 63.158 0.00 0.00 40.75 4.01
468 470 3.066814 CTGCCCCAAGGAGCTTGC 61.067 66.667 0.00 0.00 39.85 4.01
469 471 4.684134 TGCCCCAAGGAGCTTGCC 62.684 66.667 0.00 0.00 39.85 4.52
472 474 4.351054 CCCAAGGAGCTTGCCGGT 62.351 66.667 1.90 0.00 39.85 5.28
473 475 3.058160 CCAAGGAGCTTGCCGGTG 61.058 66.667 1.90 0.00 39.85 4.94
474 476 2.032528 CAAGGAGCTTGCCGGTGA 59.967 61.111 1.90 0.00 34.63 4.02
475 477 2.032681 AAGGAGCTTGCCGGTGAC 59.967 61.111 1.90 0.00 0.00 3.67
476 478 2.818169 AAGGAGCTTGCCGGTGACA 61.818 57.895 1.90 0.00 0.00 3.58
477 479 2.281484 GGAGCTTGCCGGTGACAA 60.281 61.111 1.90 0.00 0.00 3.18
478 480 2.617274 GGAGCTTGCCGGTGACAAC 61.617 63.158 1.90 0.00 0.00 3.32
479 481 2.594592 AGCTTGCCGGTGACAACC 60.595 61.111 1.90 0.00 43.76 3.77
487 489 4.963815 GGTGACAACCATTTGCGG 57.036 55.556 0.00 0.00 46.75 5.69
488 490 2.336341 GGTGACAACCATTTGCGGA 58.664 52.632 0.00 0.00 46.75 5.54
489 491 0.671251 GGTGACAACCATTTGCGGAA 59.329 50.000 0.00 0.00 46.75 4.30
490 492 1.335872 GGTGACAACCATTTGCGGAAG 60.336 52.381 0.00 0.00 46.75 3.46
491 493 0.958091 TGACAACCATTTGCGGAAGG 59.042 50.000 0.00 0.00 36.00 3.46
492 494 1.243902 GACAACCATTTGCGGAAGGA 58.756 50.000 1.84 0.00 36.00 3.36
493 495 1.200020 GACAACCATTTGCGGAAGGAG 59.800 52.381 1.84 0.00 36.00 3.69
494 496 0.109132 CAACCATTTGCGGAAGGAGC 60.109 55.000 1.84 0.00 0.00 4.70
495 497 0.251341 AACCATTTGCGGAAGGAGCT 60.251 50.000 1.84 0.00 35.28 4.09
496 498 0.678048 ACCATTTGCGGAAGGAGCTC 60.678 55.000 4.71 4.71 35.28 4.09
497 499 1.709147 CCATTTGCGGAAGGAGCTCG 61.709 60.000 7.83 0.00 35.28 5.03
498 500 1.021390 CATTTGCGGAAGGAGCTCGT 61.021 55.000 7.83 5.12 35.28 4.18
499 501 0.741221 ATTTGCGGAAGGAGCTCGTC 60.741 55.000 9.78 8.40 35.28 4.20
500 502 3.626680 TTGCGGAAGGAGCTCGTCG 62.627 63.158 9.78 10.97 35.28 5.12
501 503 4.856607 GCGGAAGGAGCTCGTCGG 62.857 72.222 9.78 13.21 0.00 4.79
502 504 3.441290 CGGAAGGAGCTCGTCGGT 61.441 66.667 9.78 0.00 0.00 4.69
503 505 2.182030 GGAAGGAGCTCGTCGGTG 59.818 66.667 9.78 0.00 0.00 4.94
504 506 2.341101 GGAAGGAGCTCGTCGGTGA 61.341 63.158 9.78 0.00 0.00 4.02
505 507 1.153997 GAAGGAGCTCGTCGGTGAC 60.154 63.158 9.78 0.00 0.00 3.67
517 519 2.585247 GGTGACGACTATGGCGCC 60.585 66.667 22.73 22.73 0.00 6.53
518 520 2.585247 GTGACGACTATGGCGCCC 60.585 66.667 26.77 6.80 0.00 6.13
519 521 4.201679 TGACGACTATGGCGCCCG 62.202 66.667 26.77 22.08 0.00 6.13
523 525 4.830765 GACTATGGCGCCCGCACA 62.831 66.667 26.77 4.49 44.11 4.57
524 526 4.402528 ACTATGGCGCCCGCACAA 62.403 61.111 26.77 3.54 44.11 3.33
525 527 3.576356 CTATGGCGCCCGCACAAG 61.576 66.667 26.77 8.17 44.11 3.16
533 535 4.379243 CCCGCACAAGGAGCTCGT 62.379 66.667 7.83 5.12 0.00 4.18
534 536 2.811317 CCGCACAAGGAGCTCGTC 60.811 66.667 9.78 0.00 0.00 4.20
535 537 3.175240 CGCACAAGGAGCTCGTCG 61.175 66.667 9.78 0.14 0.00 5.12
536 538 2.811317 GCACAAGGAGCTCGTCGG 60.811 66.667 9.78 7.85 0.00 4.79
537 539 2.811317 CACAAGGAGCTCGTCGGC 60.811 66.667 9.78 0.00 0.00 5.54
538 540 4.421479 ACAAGGAGCTCGTCGGCG 62.421 66.667 9.78 1.15 37.29 6.46
539 541 4.116328 CAAGGAGCTCGTCGGCGA 62.116 66.667 13.29 13.29 45.79 5.54
540 542 4.117661 AAGGAGCTCGTCGGCGAC 62.118 66.667 29.06 29.06 42.81 5.19
552 554 3.601981 GGCGACGCACGAGAATAG 58.398 61.111 23.09 0.00 45.77 1.73
553 555 1.944676 GGCGACGCACGAGAATAGG 60.945 63.158 23.09 0.00 45.77 2.57
554 556 1.063649 GCGACGCACGAGAATAGGA 59.936 57.895 16.42 0.00 45.77 2.94
555 557 0.524816 GCGACGCACGAGAATAGGAA 60.525 55.000 16.42 0.00 45.77 3.36
556 558 1.904144 CGACGCACGAGAATAGGAAA 58.096 50.000 0.00 0.00 45.77 3.13
557 559 2.256174 CGACGCACGAGAATAGGAAAA 58.744 47.619 0.00 0.00 45.77 2.29
558 560 2.279136 CGACGCACGAGAATAGGAAAAG 59.721 50.000 0.00 0.00 45.77 2.27
559 561 3.508762 GACGCACGAGAATAGGAAAAGA 58.491 45.455 0.00 0.00 0.00 2.52
560 562 3.921677 ACGCACGAGAATAGGAAAAGAA 58.078 40.909 0.00 0.00 0.00 2.52
561 563 3.927142 ACGCACGAGAATAGGAAAAGAAG 59.073 43.478 0.00 0.00 0.00 2.85
562 564 4.174009 CGCACGAGAATAGGAAAAGAAGA 58.826 43.478 0.00 0.00 0.00 2.87
563 565 4.266502 CGCACGAGAATAGGAAAAGAAGAG 59.733 45.833 0.00 0.00 0.00 2.85
564 566 5.411781 GCACGAGAATAGGAAAAGAAGAGA 58.588 41.667 0.00 0.00 0.00 3.10
565 567 5.518487 GCACGAGAATAGGAAAAGAAGAGAG 59.482 44.000 0.00 0.00 0.00 3.20
566 568 6.626181 GCACGAGAATAGGAAAAGAAGAGAGA 60.626 42.308 0.00 0.00 0.00 3.10
567 569 7.316640 CACGAGAATAGGAAAAGAAGAGAGAA 58.683 38.462 0.00 0.00 0.00 2.87
568 570 7.487829 CACGAGAATAGGAAAAGAAGAGAGAAG 59.512 40.741 0.00 0.00 0.00 2.85
569 571 6.978080 CGAGAATAGGAAAAGAAGAGAGAAGG 59.022 42.308 0.00 0.00 0.00 3.46
570 572 7.363443 CGAGAATAGGAAAAGAAGAGAGAAGGT 60.363 40.741 0.00 0.00 0.00 3.50
571 573 8.903059 AGAATAGGAAAAGAAGAGAGAAGGTA 57.097 34.615 0.00 0.00 0.00 3.08
572 574 9.500701 AGAATAGGAAAAGAAGAGAGAAGGTAT 57.499 33.333 0.00 0.00 0.00 2.73
573 575 9.541143 GAATAGGAAAAGAAGAGAGAAGGTATG 57.459 37.037 0.00 0.00 0.00 2.39
574 576 8.846423 ATAGGAAAAGAAGAGAGAAGGTATGA 57.154 34.615 0.00 0.00 0.00 2.15
575 577 7.181569 AGGAAAAGAAGAGAGAAGGTATGAG 57.818 40.000 0.00 0.00 0.00 2.90
576 578 5.815222 GGAAAAGAAGAGAGAAGGTATGAGC 59.185 44.000 0.00 0.00 0.00 4.26
577 579 4.647424 AAGAAGAGAGAAGGTATGAGCG 57.353 45.455 0.00 0.00 0.00 5.03
578 580 3.892284 AGAAGAGAGAAGGTATGAGCGA 58.108 45.455 0.00 0.00 0.00 4.93
579 581 3.882888 AGAAGAGAGAAGGTATGAGCGAG 59.117 47.826 0.00 0.00 0.00 5.03
580 582 3.569194 AGAGAGAAGGTATGAGCGAGA 57.431 47.619 0.00 0.00 0.00 4.04
581 583 3.211045 AGAGAGAAGGTATGAGCGAGAC 58.789 50.000 0.00 0.00 0.00 3.36
582 584 1.944024 AGAGAAGGTATGAGCGAGACG 59.056 52.381 0.00 0.00 0.00 4.18
621 623 1.522900 GGGGGAATGAATGGAGGAGA 58.477 55.000 0.00 0.00 0.00 3.71
622 624 1.423161 GGGGGAATGAATGGAGGAGAG 59.577 57.143 0.00 0.00 0.00 3.20
623 625 1.423161 GGGGAATGAATGGAGGAGAGG 59.577 57.143 0.00 0.00 0.00 3.69
624 626 2.412591 GGGAATGAATGGAGGAGAGGA 58.587 52.381 0.00 0.00 0.00 3.71
625 627 2.371510 GGGAATGAATGGAGGAGAGGAG 59.628 54.545 0.00 0.00 0.00 3.69
626 628 3.044894 GGAATGAATGGAGGAGAGGAGT 58.955 50.000 0.00 0.00 0.00 3.85
627 629 3.070878 GGAATGAATGGAGGAGAGGAGTC 59.929 52.174 0.00 0.00 0.00 3.36
628 630 2.166907 TGAATGGAGGAGAGGAGTCC 57.833 55.000 0.00 0.00 36.79 3.85
629 631 1.362584 TGAATGGAGGAGAGGAGTCCA 59.637 52.381 12.86 0.00 44.48 4.02
630 632 2.038659 GAATGGAGGAGAGGAGTCCAG 58.961 57.143 12.86 0.00 43.61 3.86
631 633 1.313889 ATGGAGGAGAGGAGTCCAGA 58.686 55.000 12.86 0.00 43.61 3.86
632 634 1.084866 TGGAGGAGAGGAGTCCAGAA 58.915 55.000 12.86 0.00 39.34 3.02
633 635 1.006519 TGGAGGAGAGGAGTCCAGAAG 59.993 57.143 12.86 0.00 39.34 2.85
634 636 1.286553 GGAGGAGAGGAGTCCAGAAGA 59.713 57.143 12.86 0.00 39.34 2.87
635 637 2.654863 GAGGAGAGGAGTCCAGAAGAG 58.345 57.143 12.86 0.00 39.34 2.85
636 638 2.241176 GAGGAGAGGAGTCCAGAAGAGA 59.759 54.545 12.86 0.00 39.34 3.10
637 639 2.858768 AGGAGAGGAGTCCAGAAGAGAT 59.141 50.000 12.86 0.00 39.34 2.75
638 640 4.051478 AGGAGAGGAGTCCAGAAGAGATA 58.949 47.826 12.86 0.00 39.34 1.98
639 641 4.480537 AGGAGAGGAGTCCAGAAGAGATAA 59.519 45.833 12.86 0.00 39.34 1.75
640 642 4.827284 GGAGAGGAGTCCAGAAGAGATAAG 59.173 50.000 12.86 0.00 36.51 1.73
641 643 4.803452 AGAGGAGTCCAGAAGAGATAAGG 58.197 47.826 12.86 0.00 0.00 2.69
642 644 3.304829 AGGAGTCCAGAAGAGATAAGGC 58.695 50.000 12.86 0.00 0.00 4.35
643 645 3.034635 GGAGTCCAGAAGAGATAAGGCA 58.965 50.000 3.60 0.00 0.00 4.75
644 646 3.645687 GGAGTCCAGAAGAGATAAGGCAT 59.354 47.826 3.60 0.00 0.00 4.40
645 647 4.262420 GGAGTCCAGAAGAGATAAGGCATC 60.262 50.000 3.60 0.00 0.00 3.91
646 648 3.320541 AGTCCAGAAGAGATAAGGCATCG 59.679 47.826 0.00 0.00 38.81 3.84
647 649 2.036475 TCCAGAAGAGATAAGGCATCGC 59.964 50.000 0.00 0.00 38.81 4.58
648 650 2.224137 CCAGAAGAGATAAGGCATCGCA 60.224 50.000 0.00 0.00 38.81 5.10
649 651 3.058450 CAGAAGAGATAAGGCATCGCAG 58.942 50.000 0.00 0.00 38.81 5.18
650 652 2.697751 AGAAGAGATAAGGCATCGCAGT 59.302 45.455 0.00 0.00 38.81 4.40
651 653 2.522836 AGAGATAAGGCATCGCAGTG 57.477 50.000 0.00 0.00 38.81 3.66
652 654 2.034878 AGAGATAAGGCATCGCAGTGA 58.965 47.619 0.00 0.00 38.81 3.41
653 655 2.035704 AGAGATAAGGCATCGCAGTGAG 59.964 50.000 0.00 0.00 38.81 3.51
654 656 1.069823 AGATAAGGCATCGCAGTGAGG 59.930 52.381 0.00 0.00 38.81 3.86
655 657 1.069204 GATAAGGCATCGCAGTGAGGA 59.931 52.381 0.00 0.00 0.00 3.71
656 658 0.461548 TAAGGCATCGCAGTGAGGAG 59.538 55.000 0.00 0.00 0.00 3.69
657 659 1.548357 AAGGCATCGCAGTGAGGAGT 61.548 55.000 0.00 0.00 0.00 3.85
658 660 1.520342 GGCATCGCAGTGAGGAGTC 60.520 63.158 0.00 0.00 0.00 3.36
659 661 1.520342 GCATCGCAGTGAGGAGTCC 60.520 63.158 0.00 0.00 0.00 3.85
660 662 1.893062 CATCGCAGTGAGGAGTCCA 59.107 57.895 12.86 0.00 0.00 4.02
661 663 0.179116 CATCGCAGTGAGGAGTCCAG 60.179 60.000 12.86 0.00 0.00 3.86
662 664 0.323816 ATCGCAGTGAGGAGTCCAGA 60.324 55.000 12.86 0.00 0.00 3.86
663 665 0.539669 TCGCAGTGAGGAGTCCAGAA 60.540 55.000 12.86 0.00 0.00 3.02
664 666 0.108898 CGCAGTGAGGAGTCCAGAAG 60.109 60.000 12.86 0.00 0.00 2.85
665 667 1.261480 GCAGTGAGGAGTCCAGAAGA 58.739 55.000 12.86 0.00 0.00 2.87
666 668 1.204467 GCAGTGAGGAGTCCAGAAGAG 59.796 57.143 12.86 0.00 0.00 2.85
667 669 2.801483 CAGTGAGGAGTCCAGAAGAGA 58.199 52.381 12.86 0.00 0.00 3.10
668 670 3.364549 CAGTGAGGAGTCCAGAAGAGAT 58.635 50.000 12.86 0.00 0.00 2.75
669 671 4.531854 CAGTGAGGAGTCCAGAAGAGATA 58.468 47.826 12.86 0.00 0.00 1.98
670 672 4.952957 CAGTGAGGAGTCCAGAAGAGATAA 59.047 45.833 12.86 0.00 0.00 1.75
671 673 5.067674 CAGTGAGGAGTCCAGAAGAGATAAG 59.932 48.000 12.86 0.00 0.00 1.73
672 674 4.340950 GTGAGGAGTCCAGAAGAGATAAGG 59.659 50.000 12.86 0.00 0.00 2.69
673 675 3.304829 AGGAGTCCAGAAGAGATAAGGC 58.695 50.000 12.86 0.00 0.00 4.35
674 676 3.034635 GGAGTCCAGAAGAGATAAGGCA 58.965 50.000 3.60 0.00 0.00 4.75
675 677 3.645687 GGAGTCCAGAAGAGATAAGGCAT 59.354 47.826 3.60 0.00 0.00 4.40
676 678 4.262420 GGAGTCCAGAAGAGATAAGGCATC 60.262 50.000 3.60 0.00 0.00 3.91
677 679 3.320541 AGTCCAGAAGAGATAAGGCATCG 59.679 47.826 0.00 0.00 38.81 3.84
678 680 2.036475 TCCAGAAGAGATAAGGCATCGC 59.964 50.000 0.00 0.00 38.81 4.58
679 681 2.224137 CCAGAAGAGATAAGGCATCGCA 60.224 50.000 0.00 0.00 38.81 5.10
680 682 3.058450 CAGAAGAGATAAGGCATCGCAG 58.942 50.000 0.00 0.00 38.81 5.18
681 683 2.036992 AGAAGAGATAAGGCATCGCAGG 59.963 50.000 0.00 0.00 38.81 4.85
682 684 1.709578 AGAGATAAGGCATCGCAGGA 58.290 50.000 0.00 0.00 38.81 3.86
683 685 2.042464 AGAGATAAGGCATCGCAGGAA 58.958 47.619 0.00 0.00 38.81 3.36
684 686 2.435805 AGAGATAAGGCATCGCAGGAAA 59.564 45.455 0.00 0.00 38.81 3.13
685 687 3.072184 AGAGATAAGGCATCGCAGGAAAT 59.928 43.478 0.00 0.00 38.81 2.17
686 688 4.284490 AGAGATAAGGCATCGCAGGAAATA 59.716 41.667 0.00 0.00 38.81 1.40
687 689 4.973168 AGATAAGGCATCGCAGGAAATAA 58.027 39.130 0.00 0.00 38.81 1.40
688 690 5.376625 AGATAAGGCATCGCAGGAAATAAA 58.623 37.500 0.00 0.00 38.81 1.40
689 691 5.471456 AGATAAGGCATCGCAGGAAATAAAG 59.529 40.000 0.00 0.00 38.81 1.85
690 692 2.301346 AGGCATCGCAGGAAATAAAGG 58.699 47.619 0.00 0.00 0.00 3.11
691 693 1.269257 GGCATCGCAGGAAATAAAGGC 60.269 52.381 0.00 0.00 0.00 4.35
693 695 0.663153 ATCGCAGGAAATAAAGGCGC 59.337 50.000 0.00 0.00 46.60 6.53
694 696 1.297598 CGCAGGAAATAAAGGCGCG 60.298 57.895 0.00 0.00 41.27 6.86
695 697 1.800681 GCAGGAAATAAAGGCGCGT 59.199 52.632 8.43 0.00 0.00 6.01
696 698 0.523335 GCAGGAAATAAAGGCGCGTG 60.523 55.000 8.43 0.00 0.00 5.34
697 699 0.802494 CAGGAAATAAAGGCGCGTGT 59.198 50.000 8.43 0.00 0.00 4.49
698 700 0.802494 AGGAAATAAAGGCGCGTGTG 59.198 50.000 8.43 0.00 0.00 3.82
699 701 0.800012 GGAAATAAAGGCGCGTGTGA 59.200 50.000 8.43 0.00 0.00 3.58
700 702 1.198178 GGAAATAAAGGCGCGTGTGAA 59.802 47.619 8.43 0.00 0.00 3.18
701 703 2.239201 GAAATAAAGGCGCGTGTGAAC 58.761 47.619 8.43 0.00 0.00 3.18
702 704 0.165079 AATAAAGGCGCGTGTGAACG 59.835 50.000 8.43 0.00 0.00 3.95
703 705 0.668096 ATAAAGGCGCGTGTGAACGA 60.668 50.000 8.43 0.00 34.64 3.85
704 706 1.279527 TAAAGGCGCGTGTGAACGAG 61.280 55.000 8.43 0.00 36.06 4.18
708 710 2.168621 CGCGTGTGAACGAGCAAG 59.831 61.111 0.00 0.00 34.64 4.01
709 711 2.127609 GCGTGTGAACGAGCAAGC 60.128 61.111 1.87 0.00 34.64 4.01
710 712 2.168621 CGTGTGAACGAGCAAGCG 59.831 61.111 0.00 0.00 34.64 4.68
711 713 2.300066 CGTGTGAACGAGCAAGCGA 61.300 57.895 0.00 0.00 34.64 4.93
712 714 1.201825 GTGTGAACGAGCAAGCGAC 59.798 57.895 0.00 0.00 34.83 5.19
713 715 2.300066 TGTGAACGAGCAAGCGACG 61.300 57.895 11.50 11.50 34.83 5.12
714 716 3.403057 TGAACGAGCAAGCGACGC 61.403 61.111 13.03 13.03 34.83 5.19
715 717 4.470050 GAACGAGCAAGCGACGCG 62.470 66.667 15.18 3.53 34.83 6.01
716 718 4.994201 AACGAGCAAGCGACGCGA 62.994 61.111 15.93 0.00 34.83 5.87
727 729 3.170585 GACGCGACCGACCGAAAG 61.171 66.667 15.93 0.00 38.29 2.62
728 730 3.886329 GACGCGACCGACCGAAAGT 62.886 63.158 15.93 0.00 38.29 2.66
729 731 2.732094 CGCGACCGACCGAAAGTT 60.732 61.111 0.00 0.00 36.29 2.66
730 732 2.713894 CGCGACCGACCGAAAGTTC 61.714 63.158 0.00 0.00 36.29 3.01
756 758 2.024588 CGCAGCACACAAGCGTTT 59.975 55.556 0.00 0.00 45.82 3.60
757 759 1.278337 CGCAGCACACAAGCGTTTA 59.722 52.632 0.00 0.00 45.82 2.01
758 760 0.991770 CGCAGCACACAAGCGTTTAC 60.992 55.000 0.00 0.00 45.82 2.01
759 761 0.660300 GCAGCACACAAGCGTTTACC 60.660 55.000 0.00 0.00 40.15 2.85
785 787 7.771927 AAAAACAATCTCTTCAGGTCATCAT 57.228 32.000 0.00 0.00 0.00 2.45
796 798 3.503363 TCAGGTCATCATGTTTGACAAGC 59.497 43.478 23.45 12.53 44.22 4.01
891 894 8.143835 AGGGTTTGAATAAGAAAATGTGTGAAG 58.856 33.333 0.00 0.00 0.00 3.02
1244 1247 8.582657 ACTGGTAGTAGCATATACTAATCCAG 57.417 38.462 19.88 19.88 43.14 3.86
1273 1276 4.505191 GCATTCATCCATGTTTTCCATTCG 59.495 41.667 0.00 0.00 0.00 3.34
1311 1340 1.377725 GCACTGCCACTGCACCTAT 60.378 57.895 0.00 0.00 44.23 2.57
1312 1341 0.962356 GCACTGCCACTGCACCTATT 60.962 55.000 0.00 0.00 44.23 1.73
1313 1342 0.806868 CACTGCCACTGCACCTATTG 59.193 55.000 0.00 0.00 44.23 1.90
1314 1343 0.692476 ACTGCCACTGCACCTATTGA 59.308 50.000 0.00 0.00 44.23 2.57
1478 1510 0.318699 TCCAAGACGCACGAGTTCTG 60.319 55.000 0.00 0.00 0.00 3.02
1500 1534 7.506114 TCTGTTGTGTTCTTGTATAGTTCCTT 58.494 34.615 0.00 0.00 0.00 3.36
1588 1622 1.270907 ACTAACTGCTGCCAGCTAGT 58.729 50.000 18.96 15.86 42.95 2.57
1600 1642 1.084370 CAGCTAGTAGTGTTGCCGCC 61.084 60.000 0.00 0.00 0.00 6.13
1604 1646 0.613853 TAGTAGTGTTGCCGCCTCCT 60.614 55.000 0.00 0.00 0.00 3.69
1606 1648 3.605749 TAGTGTTGCCGCCTCCTGC 62.606 63.158 0.00 0.00 0.00 4.85
1654 1744 6.018433 AGGCATACACTCCTTAATTTCCAT 57.982 37.500 0.00 0.00 0.00 3.41
1748 1846 3.367395 GCTGGGCTAGTGAAATTTTCCAC 60.367 47.826 6.68 2.55 0.00 4.02
1785 1883 3.012518 AGCCTTCTTGTGATTGGATTCG 58.987 45.455 0.00 0.00 0.00 3.34
1787 1885 3.012518 CCTTCTTGTGATTGGATTCGCT 58.987 45.455 0.00 0.00 0.00 4.93
1956 2054 5.184096 ACAGACAACATGTACCTAGAGACTG 59.816 44.000 0.00 0.00 0.00 3.51
2067 2166 1.135286 CACGCATGCACACTCTAGAGA 60.135 52.381 26.57 3.47 0.00 3.10
2091 2190 8.308931 AGATCATGCAAACAGACAAAATGTATT 58.691 29.630 0.00 0.00 0.00 1.89
2141 2240 4.536765 ACCCGCTTTCATGGAGATATTTT 58.463 39.130 0.00 0.00 0.00 1.82
2152 2251 8.175925 TCATGGAGATATTTTTGTGTTTGTCA 57.824 30.769 0.00 0.00 0.00 3.58
2352 2484 7.014905 TCCACACTACAGACAATGTAAGTACTT 59.985 37.037 13.68 13.68 43.78 2.24
2355 2487 9.856488 ACACTACAGACAATGTAAGTACTTATG 57.144 33.333 18.03 14.36 43.78 1.90
2409 2541 7.487822 TGAAGAGAAGTCCTGATGTAGAAAT 57.512 36.000 0.00 0.00 0.00 2.17
2490 2622 9.057089 CACTGTTCTACCTTTCAAAGTAGAAAT 57.943 33.333 16.99 8.60 39.26 2.17
2511 2718 4.371624 TTTGTCATCCTGGAGTTCATGT 57.628 40.909 1.52 0.00 0.00 3.21
2531 2738 0.994995 CTCACTCCAAGAACATCGCG 59.005 55.000 0.00 0.00 0.00 5.87
2563 2770 3.376546 CACTGGCAGAGCTAAGAATTTCC 59.623 47.826 23.66 0.00 0.00 3.13
2639 2846 9.298250 AGTGTAGTAGAGACTAATTTCAGACAA 57.702 33.333 0.00 0.00 39.91 3.18
2658 2868 3.823873 ACAACGGCATCATCAAAACCTTA 59.176 39.130 0.00 0.00 0.00 2.69
2712 2922 6.283694 TCTGAAGCCTAACATGTGCTAATAG 58.716 40.000 9.36 8.37 34.29 1.73
2838 3048 8.257306 TCACTACTGCATGTCATCAAACTATTA 58.743 33.333 0.00 0.00 0.00 0.98
2924 3134 0.246635 ACTGCTATCCGCTTCAACGT 59.753 50.000 0.00 0.00 40.11 3.99
2971 3181 1.258445 CCTTAGCTGAGACCACCGGT 61.258 60.000 0.00 0.00 39.44 5.28
3131 3341 4.039730 ACATATCATCCCCTTCTTCGTCAG 59.960 45.833 0.00 0.00 0.00 3.51
3133 3343 0.250234 CATCCCCTTCTTCGTCAGCA 59.750 55.000 0.00 0.00 0.00 4.41
3175 3385 3.333219 CCCCCTGAGAAGGCTGCA 61.333 66.667 0.50 0.00 0.00 4.41
3312 3522 6.091437 ACTACGAAGTCGAGGTAAATCAAAG 58.909 40.000 7.87 0.00 43.93 2.77
3335 3545 6.179756 AGAGTCGATGCAGATATCATAGTCT 58.820 40.000 5.32 0.00 0.00 3.24
3510 3723 0.036022 GAAAGACAGGGTGCAGAGCT 59.964 55.000 0.00 0.00 0.00 4.09
3545 3758 0.611340 GGTACCTGACAGTCCTCGGT 60.611 60.000 4.06 10.21 0.00 4.69
3762 3975 5.531122 TCTTTATTCCCTGACACTATCGG 57.469 43.478 0.00 0.00 0.00 4.18
3821 4117 5.974108 ACCTCGTGTGCTGTATTATAGTTT 58.026 37.500 0.00 0.00 0.00 2.66
3994 4291 0.254178 GGCCTCTCAAATGCCAGAGA 59.746 55.000 0.00 0.00 44.70 3.10
4171 4474 7.064728 GTCATGGTGGTTTCAATCTAGTTACTC 59.935 40.741 0.00 0.00 0.00 2.59
4177 4480 5.004535 GGTTTCAATCTAGTTACTCTTCGCG 59.995 44.000 0.00 0.00 0.00 5.87
4423 4726 7.812191 TGATAAGATGCACAAAATGTTGTTACC 59.188 33.333 0.00 0.00 46.01 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.240945 CTGGAACCGGTGTTTCATGC 59.759 55.000 8.52 0.00 39.27 4.06
20 21 1.068434 CATGTTTTTGCTGGAACCGGT 59.932 47.619 0.00 0.00 0.00 5.28
21 22 1.339610 TCATGTTTTTGCTGGAACCGG 59.660 47.619 0.00 0.00 0.00 5.28
33 34 3.417101 TGCTTCCACCGTATCATGTTTT 58.583 40.909 0.00 0.00 0.00 2.43
60 61 2.292103 TTTTGCTGCAACAGGTGTTC 57.708 45.000 15.72 0.00 35.83 3.18
61 62 2.168106 TGATTTTGCTGCAACAGGTGTT 59.832 40.909 15.72 0.00 39.12 3.32
67 68 3.257393 ACGTTTTGATTTTGCTGCAACA 58.743 36.364 15.72 9.41 0.00 3.33
107 109 2.556622 TCTTCGGATTTTGCTGGAAACC 59.443 45.455 0.00 0.00 0.00 3.27
152 154 3.868661 CCAGTTTGGTTTTTGCTACAACC 59.131 43.478 9.00 9.00 42.61 3.77
166 168 1.067916 GGTGCTGCAACCAGTTTGG 59.932 57.895 6.36 0.00 45.02 3.28
167 169 1.815196 TGGTGCTGCAACCAGTTTG 59.185 52.632 16.16 0.00 45.43 2.93
168 170 4.353325 TGGTGCTGCAACCAGTTT 57.647 50.000 16.16 0.00 45.43 2.66
173 175 3.660111 GACGGTGGTGCTGCAACC 61.660 66.667 16.16 14.08 40.94 3.77
174 176 4.012895 CGACGGTGGTGCTGCAAC 62.013 66.667 11.52 11.52 0.00 4.17
184 186 4.487412 GACTACGGCCCGACGGTG 62.487 72.222 11.71 5.55 38.39 4.94
186 188 4.487412 GTGACTACGGCCCGACGG 62.487 72.222 11.71 6.99 38.39 4.79
187 189 4.487412 GGTGACTACGGCCCGACG 62.487 72.222 11.71 1.90 40.31 5.12
188 190 3.376078 TGGTGACTACGGCCCGAC 61.376 66.667 11.71 0.00 0.00 4.79
189 191 3.376078 GTGGTGACTACGGCCCGA 61.376 66.667 11.71 0.00 0.00 5.14
190 192 3.379445 AGTGGTGACTACGGCCCG 61.379 66.667 0.00 0.00 0.00 6.13
191 193 2.264794 CAGTGGTGACTACGGCCC 59.735 66.667 0.00 0.00 0.00 5.80
192 194 1.080025 GACAGTGGTGACTACGGCC 60.080 63.158 0.00 0.00 0.00 6.13
193 195 1.443872 CGACAGTGGTGACTACGGC 60.444 63.158 0.00 0.00 31.66 5.68
194 196 1.211969 CCGACAGTGGTGACTACGG 59.788 63.158 0.00 0.00 41.52 4.02
195 197 1.211969 CCCGACAGTGGTGACTACG 59.788 63.158 0.00 0.00 33.65 3.51
196 198 1.080025 GCCCGACAGTGGTGACTAC 60.080 63.158 0.00 0.00 0.00 2.73
197 199 1.228769 AGCCCGACAGTGGTGACTA 60.229 57.895 0.00 0.00 0.00 2.59
198 200 2.524394 AGCCCGACAGTGGTGACT 60.524 61.111 0.00 0.00 0.00 3.41
199 201 2.357517 CAGCCCGACAGTGGTGAC 60.358 66.667 0.00 0.00 31.81 3.67
200 202 2.842462 ACAGCCCGACAGTGGTGA 60.842 61.111 0.00 0.00 34.24 4.02
201 203 2.666190 CACAGCCCGACAGTGGTG 60.666 66.667 0.00 0.00 32.40 4.17
204 206 2.357517 GACCACAGCCCGACAGTG 60.358 66.667 0.00 0.00 35.64 3.66
205 207 2.842462 TGACCACAGCCCGACAGT 60.842 61.111 0.00 0.00 0.00 3.55
206 208 2.357517 GTGACCACAGCCCGACAG 60.358 66.667 0.00 0.00 0.00 3.51
207 209 3.936203 GGTGACCACAGCCCGACA 61.936 66.667 0.00 0.00 38.41 4.35
208 210 3.936203 TGGTGACCACAGCCCGAC 61.936 66.667 0.00 0.00 42.95 4.79
233 235 4.740822 AACTGTGGCGGCCATCCC 62.741 66.667 26.68 13.21 35.28 3.85
234 236 3.134127 GAACTGTGGCGGCCATCC 61.134 66.667 26.68 14.01 35.28 3.51
235 237 2.359850 TGAACTGTGGCGGCCATC 60.360 61.111 26.68 18.61 35.28 3.51
236 238 2.672996 GTGAACTGTGGCGGCCAT 60.673 61.111 26.68 9.09 35.28 4.40
237 239 4.947147 GGTGAACTGTGGCGGCCA 62.947 66.667 19.77 19.77 0.00 5.36
240 242 2.590575 AACGGTGAACTGTGGCGG 60.591 61.111 0.00 0.00 35.26 6.13
241 243 2.631428 CAACGGTGAACTGTGGCG 59.369 61.111 0.00 0.00 35.26 5.69
242 244 2.331451 GCAACGGTGAACTGTGGC 59.669 61.111 3.55 6.03 44.11 5.01
243 245 2.551912 GGGCAACGGTGAACTGTGG 61.552 63.158 3.55 0.00 35.26 4.17
244 246 2.551912 GGGGCAACGGTGAACTGTG 61.552 63.158 3.55 0.00 35.26 3.66
245 247 2.203294 GGGGCAACGGTGAACTGT 60.203 61.111 3.55 0.00 36.96 3.55
246 248 2.983592 GGGGGCAACGGTGAACTG 60.984 66.667 3.55 0.00 37.60 3.16
260 262 1.272258 ACCGGATTTGTTACAAGGGGG 60.272 52.381 9.46 1.98 0.00 5.40
261 263 2.089201 GACCGGATTTGTTACAAGGGG 58.911 52.381 9.46 1.65 0.00 4.79
262 264 1.735571 CGACCGGATTTGTTACAAGGG 59.264 52.381 9.46 1.98 0.00 3.95
263 265 2.414138 GACGACCGGATTTGTTACAAGG 59.586 50.000 9.46 0.00 0.00 3.61
264 266 2.091588 CGACGACCGGATTTGTTACAAG 59.908 50.000 9.46 0.00 33.91 3.16
265 267 2.060284 CGACGACCGGATTTGTTACAA 58.940 47.619 9.46 0.00 33.91 2.41
266 268 1.700523 CGACGACCGGATTTGTTACA 58.299 50.000 9.46 0.00 33.91 2.41
277 279 1.153901 ATGCTACAACCGACGACCG 60.154 57.895 0.00 0.00 38.18 4.79
278 280 1.082117 CCATGCTACAACCGACGACC 61.082 60.000 0.00 0.00 0.00 4.79
279 281 0.108992 TCCATGCTACAACCGACGAC 60.109 55.000 0.00 0.00 0.00 4.34
280 282 0.108992 GTCCATGCTACAACCGACGA 60.109 55.000 0.00 0.00 0.00 4.20
281 283 1.410737 CGTCCATGCTACAACCGACG 61.411 60.000 3.17 3.17 37.39 5.12
282 284 1.082117 CCGTCCATGCTACAACCGAC 61.082 60.000 0.00 0.00 0.00 4.79
283 285 1.216977 CCGTCCATGCTACAACCGA 59.783 57.895 0.00 0.00 0.00 4.69
284 286 1.082117 GTCCGTCCATGCTACAACCG 61.082 60.000 0.00 0.00 0.00 4.44
285 287 0.036765 TGTCCGTCCATGCTACAACC 60.037 55.000 0.00 0.00 0.00 3.77
286 288 1.076332 GTGTCCGTCCATGCTACAAC 58.924 55.000 0.00 0.00 0.00 3.32
287 289 0.973632 AGTGTCCGTCCATGCTACAA 59.026 50.000 0.00 0.00 0.00 2.41
288 290 0.246360 CAGTGTCCGTCCATGCTACA 59.754 55.000 0.00 0.00 0.00 2.74
289 291 0.246635 ACAGTGTCCGTCCATGCTAC 59.753 55.000 0.00 0.00 0.00 3.58
290 292 0.973632 AACAGTGTCCGTCCATGCTA 59.026 50.000 0.00 0.00 0.00 3.49
291 293 0.108585 AAACAGTGTCCGTCCATGCT 59.891 50.000 0.00 0.00 0.00 3.79
292 294 0.238289 CAAACAGTGTCCGTCCATGC 59.762 55.000 0.00 0.00 0.00 4.06
293 295 1.593196 ACAAACAGTGTCCGTCCATG 58.407 50.000 0.00 0.00 34.38 3.66
294 296 2.870435 GCTACAAACAGTGTCCGTCCAT 60.870 50.000 0.00 0.00 41.98 3.41
295 297 1.539496 GCTACAAACAGTGTCCGTCCA 60.539 52.381 0.00 0.00 41.98 4.02
296 298 1.145803 GCTACAAACAGTGTCCGTCC 58.854 55.000 0.00 0.00 41.98 4.79
297 299 1.525619 GTGCTACAAACAGTGTCCGTC 59.474 52.381 0.00 0.00 41.98 4.79
298 300 1.578583 GTGCTACAAACAGTGTCCGT 58.421 50.000 0.00 0.00 41.98 4.69
299 301 0.506932 CGTGCTACAAACAGTGTCCG 59.493 55.000 0.00 0.00 41.98 4.79
300 302 0.865769 CCGTGCTACAAACAGTGTCC 59.134 55.000 0.00 0.00 41.98 4.02
301 303 1.578583 ACCGTGCTACAAACAGTGTC 58.421 50.000 0.00 0.00 41.98 3.67
302 304 1.668751 CAACCGTGCTACAAACAGTGT 59.331 47.619 0.00 0.00 44.82 3.55
303 305 1.668751 ACAACCGTGCTACAAACAGTG 59.331 47.619 0.00 0.00 0.00 3.66
304 306 1.668751 CACAACCGTGCTACAAACAGT 59.331 47.619 0.00 0.00 36.06 3.55
305 307 2.383298 CACAACCGTGCTACAAACAG 57.617 50.000 0.00 0.00 36.06 3.16
339 341 2.593376 CATGGTCATGGCGTACTCG 58.407 57.895 3.17 0.00 40.37 4.18
348 350 2.203252 CCTCCGGCCATGGTCATG 60.203 66.667 18.31 6.86 38.51 3.07
349 351 2.366837 TCCTCCGGCCATGGTCAT 60.367 61.111 18.31 0.00 0.00 3.06
350 352 3.083349 CTCCTCCGGCCATGGTCA 61.083 66.667 18.31 0.00 0.00 4.02
351 353 3.866582 CCTCCTCCGGCCATGGTC 61.867 72.222 14.67 10.70 0.00 4.02
352 354 4.414956 TCCTCCTCCGGCCATGGT 62.415 66.667 14.67 0.00 0.00 3.55
353 355 3.866582 GTCCTCCTCCGGCCATGG 61.867 72.222 7.63 7.63 0.00 3.66
354 356 4.227134 CGTCCTCCTCCGGCCATG 62.227 72.222 2.24 0.00 0.00 3.66
355 357 4.458829 TCGTCCTCCTCCGGCCAT 62.459 66.667 2.24 0.00 0.00 4.40
357 359 4.816984 TCTCGTCCTCCTCCGGCC 62.817 72.222 0.00 0.00 0.00 6.13
358 360 2.754658 TTCTCGTCCTCCTCCGGC 60.755 66.667 0.00 0.00 0.00 6.13
359 361 0.680280 TTCTTCTCGTCCTCCTCCGG 60.680 60.000 0.00 0.00 0.00 5.14
360 362 1.174783 TTTCTTCTCGTCCTCCTCCG 58.825 55.000 0.00 0.00 0.00 4.63
361 363 2.563620 ACTTTTCTTCTCGTCCTCCTCC 59.436 50.000 0.00 0.00 0.00 4.30
362 364 3.580731 CACTTTTCTTCTCGTCCTCCTC 58.419 50.000 0.00 0.00 0.00 3.71
363 365 2.300437 CCACTTTTCTTCTCGTCCTCCT 59.700 50.000 0.00 0.00 0.00 3.69
364 366 2.037381 ACCACTTTTCTTCTCGTCCTCC 59.963 50.000 0.00 0.00 0.00 4.30
365 367 3.060602 CACCACTTTTCTTCTCGTCCTC 58.939 50.000 0.00 0.00 0.00 3.71
366 368 2.224305 CCACCACTTTTCTTCTCGTCCT 60.224 50.000 0.00 0.00 0.00 3.85
367 369 2.143925 CCACCACTTTTCTTCTCGTCC 58.856 52.381 0.00 0.00 0.00 4.79
368 370 2.801111 GTCCACCACTTTTCTTCTCGTC 59.199 50.000 0.00 0.00 0.00 4.20
369 371 2.802057 CGTCCACCACTTTTCTTCTCGT 60.802 50.000 0.00 0.00 0.00 4.18
370 372 1.792949 CGTCCACCACTTTTCTTCTCG 59.207 52.381 0.00 0.00 0.00 4.04
371 373 2.801111 GTCGTCCACCACTTTTCTTCTC 59.199 50.000 0.00 0.00 0.00 2.87
372 374 2.484947 GGTCGTCCACCACTTTTCTTCT 60.485 50.000 0.00 0.00 45.98 2.85
373 375 1.871676 GGTCGTCCACCACTTTTCTTC 59.128 52.381 0.00 0.00 45.98 2.87
374 376 1.963172 GGTCGTCCACCACTTTTCTT 58.037 50.000 0.00 0.00 45.98 2.52
375 377 3.700198 GGTCGTCCACCACTTTTCT 57.300 52.632 0.00 0.00 45.98 2.52
406 408 4.379243 ACACCGGCGAGCTCCTTG 62.379 66.667 9.30 0.76 0.00 3.61
407 409 4.070552 GACACCGGCGAGCTCCTT 62.071 66.667 9.30 0.00 0.00 3.36
419 421 2.260743 GAACGGGAGGTCGACACC 59.739 66.667 18.91 18.72 44.19 4.16
426 428 0.981183 TTGTAGCATGAACGGGAGGT 59.019 50.000 0.00 0.00 0.00 3.85
427 429 1.656652 CTTGTAGCATGAACGGGAGG 58.343 55.000 0.00 0.00 0.00 4.30
428 430 1.207089 TCCTTGTAGCATGAACGGGAG 59.793 52.381 0.00 0.00 0.00 4.30
429 431 1.207089 CTCCTTGTAGCATGAACGGGA 59.793 52.381 0.00 5.14 0.00 5.14
430 432 1.066143 ACTCCTTGTAGCATGAACGGG 60.066 52.381 0.00 0.87 0.00 5.28
431 433 2.093973 AGACTCCTTGTAGCATGAACGG 60.094 50.000 0.00 0.00 0.00 4.44
432 434 2.926200 CAGACTCCTTGTAGCATGAACG 59.074 50.000 0.00 0.00 0.00 3.95
433 435 2.675348 GCAGACTCCTTGTAGCATGAAC 59.325 50.000 0.00 0.00 32.25 3.18
434 436 2.355108 GGCAGACTCCTTGTAGCATGAA 60.355 50.000 0.00 0.00 33.21 2.57
435 437 1.208052 GGCAGACTCCTTGTAGCATGA 59.792 52.381 0.00 0.00 33.21 3.07
436 438 1.661341 GGCAGACTCCTTGTAGCATG 58.339 55.000 0.00 0.00 33.21 4.06
437 439 0.543749 GGGCAGACTCCTTGTAGCAT 59.456 55.000 0.00 0.00 33.21 3.79
438 440 1.553690 GGGGCAGACTCCTTGTAGCA 61.554 60.000 0.00 0.00 33.21 3.49
439 441 1.222113 GGGGCAGACTCCTTGTAGC 59.778 63.158 0.00 0.00 0.00 3.58
440 442 0.984230 TTGGGGCAGACTCCTTGTAG 59.016 55.000 0.00 0.00 0.00 2.74
441 443 0.984230 CTTGGGGCAGACTCCTTGTA 59.016 55.000 0.00 0.00 0.00 2.41
442 444 1.763770 CTTGGGGCAGACTCCTTGT 59.236 57.895 0.00 0.00 0.00 3.16
443 445 1.001641 CCTTGGGGCAGACTCCTTG 60.002 63.158 0.00 0.00 0.00 3.61
444 446 1.151810 TCCTTGGGGCAGACTCCTT 60.152 57.895 0.00 0.00 0.00 3.36
445 447 1.614824 CTCCTTGGGGCAGACTCCT 60.615 63.158 0.00 0.00 0.00 3.69
446 448 2.993853 CTCCTTGGGGCAGACTCC 59.006 66.667 0.00 0.00 0.00 3.85
447 449 1.846712 AAGCTCCTTGGGGCAGACTC 61.847 60.000 14.54 0.00 0.00 3.36
448 450 1.849823 AAGCTCCTTGGGGCAGACT 60.850 57.895 14.54 0.00 0.00 3.24
449 451 1.676967 CAAGCTCCTTGGGGCAGAC 60.677 63.158 14.54 0.00 37.77 3.51
450 452 2.759114 CAAGCTCCTTGGGGCAGA 59.241 61.111 14.54 0.00 37.77 4.26
451 453 3.066814 GCAAGCTCCTTGGGGCAG 61.067 66.667 14.54 6.94 41.31 4.85
452 454 4.684134 GGCAAGCTCCTTGGGGCA 62.684 66.667 14.54 0.00 41.31 5.36
455 457 4.351054 ACCGGCAAGCTCCTTGGG 62.351 66.667 0.00 3.56 41.31 4.12
456 458 3.058160 CACCGGCAAGCTCCTTGG 61.058 66.667 0.00 0.00 41.31 3.61
457 459 2.032528 TCACCGGCAAGCTCCTTG 59.967 61.111 0.00 0.74 43.57 3.61
458 460 2.032681 GTCACCGGCAAGCTCCTT 59.967 61.111 0.00 0.00 0.00 3.36
459 461 2.818169 TTGTCACCGGCAAGCTCCT 61.818 57.895 0.00 0.00 0.00 3.69
460 462 2.281484 TTGTCACCGGCAAGCTCC 60.281 61.111 0.00 0.00 0.00 4.70
461 463 2.617274 GGTTGTCACCGGCAAGCTC 61.617 63.158 13.25 0.00 40.11 4.09
462 464 2.594592 GGTTGTCACCGGCAAGCT 60.595 61.111 13.25 0.00 40.11 3.74
470 472 0.671251 TTCCGCAAATGGTTGTCACC 59.329 50.000 0.00 0.00 44.56 4.02
471 473 1.335872 CCTTCCGCAAATGGTTGTCAC 60.336 52.381 0.00 0.00 37.06 3.67
472 474 0.958091 CCTTCCGCAAATGGTTGTCA 59.042 50.000 0.00 0.00 37.06 3.58
473 475 1.200020 CTCCTTCCGCAAATGGTTGTC 59.800 52.381 0.00 0.00 37.06 3.18
474 476 1.247567 CTCCTTCCGCAAATGGTTGT 58.752 50.000 0.00 0.00 37.06 3.32
475 477 0.109132 GCTCCTTCCGCAAATGGTTG 60.109 55.000 0.00 0.00 37.83 3.77
476 478 0.251341 AGCTCCTTCCGCAAATGGTT 60.251 50.000 0.00 0.00 0.00 3.67
477 479 0.678048 GAGCTCCTTCCGCAAATGGT 60.678 55.000 0.87 0.00 0.00 3.55
478 480 1.709147 CGAGCTCCTTCCGCAAATGG 61.709 60.000 8.47 0.00 0.00 3.16
479 481 1.021390 ACGAGCTCCTTCCGCAAATG 61.021 55.000 8.47 0.00 0.00 2.32
480 482 0.741221 GACGAGCTCCTTCCGCAAAT 60.741 55.000 8.47 0.00 0.00 2.32
481 483 1.374252 GACGAGCTCCTTCCGCAAA 60.374 57.895 8.47 0.00 0.00 3.68
482 484 2.261671 GACGAGCTCCTTCCGCAA 59.738 61.111 8.47 0.00 0.00 4.85
483 485 4.116328 CGACGAGCTCCTTCCGCA 62.116 66.667 8.47 0.00 0.00 5.69
484 486 4.856607 CCGACGAGCTCCTTCCGC 62.857 72.222 8.47 0.00 0.00 5.54
485 487 3.441290 ACCGACGAGCTCCTTCCG 61.441 66.667 8.47 6.44 0.00 4.30
486 488 2.182030 CACCGACGAGCTCCTTCC 59.818 66.667 8.47 0.00 0.00 3.46
487 489 1.153997 GTCACCGACGAGCTCCTTC 60.154 63.158 8.47 3.95 0.00 3.46
488 490 2.963371 GTCACCGACGAGCTCCTT 59.037 61.111 8.47 0.00 0.00 3.36
498 500 2.795973 CGCCATAGTCGTCACCGA 59.204 61.111 0.00 0.00 41.73 4.69
499 501 2.954868 GCGCCATAGTCGTCACCG 60.955 66.667 0.00 0.00 0.00 4.94
500 502 2.585247 GGCGCCATAGTCGTCACC 60.585 66.667 24.80 0.00 0.00 4.02
501 503 2.585247 GGGCGCCATAGTCGTCAC 60.585 66.667 30.85 1.84 32.49 3.67
502 504 4.201679 CGGGCGCCATAGTCGTCA 62.202 66.667 30.85 0.00 32.49 4.35
506 508 4.830765 TGTGCGGGCGCCATAGTC 62.831 66.667 30.85 14.37 41.09 2.59
507 509 4.402528 TTGTGCGGGCGCCATAGT 62.403 61.111 30.85 0.00 41.09 2.12
508 510 3.576356 CTTGTGCGGGCGCCATAG 61.576 66.667 30.85 19.79 41.09 2.23
516 518 4.379243 ACGAGCTCCTTGTGCGGG 62.379 66.667 8.47 0.00 35.28 6.13
517 519 2.811317 GACGAGCTCCTTGTGCGG 60.811 66.667 8.47 0.00 35.28 5.69
518 520 3.175240 CGACGAGCTCCTTGTGCG 61.175 66.667 8.47 0.00 35.28 5.34
519 521 2.811317 CCGACGAGCTCCTTGTGC 60.811 66.667 8.47 0.00 0.00 4.57
520 522 2.811317 GCCGACGAGCTCCTTGTG 60.811 66.667 8.47 0.00 0.00 3.33
521 523 4.421479 CGCCGACGAGCTCCTTGT 62.421 66.667 8.47 0.00 43.93 3.16
522 524 4.116328 TCGCCGACGAGCTCCTTG 62.116 66.667 8.47 0.06 45.12 3.61
532 534 2.908088 TATTCTCGTGCGTCGCCGAC 62.908 60.000 21.44 7.29 39.67 4.79
533 535 2.642249 CTATTCTCGTGCGTCGCCGA 62.642 60.000 23.01 23.01 39.67 5.54
534 536 2.277692 TATTCTCGTGCGTCGCCG 60.278 61.111 15.88 17.25 39.67 6.46
535 537 1.944676 CCTATTCTCGTGCGTCGCC 60.945 63.158 15.88 5.17 39.67 5.54
536 538 0.524816 TTCCTATTCTCGTGCGTCGC 60.525 55.000 11.10 11.10 39.67 5.19
537 539 1.904144 TTTCCTATTCTCGTGCGTCG 58.096 50.000 0.00 0.00 41.41 5.12
538 540 3.508762 TCTTTTCCTATTCTCGTGCGTC 58.491 45.455 0.00 0.00 0.00 5.19
539 541 3.587797 TCTTTTCCTATTCTCGTGCGT 57.412 42.857 0.00 0.00 0.00 5.24
540 542 4.174009 TCTTCTTTTCCTATTCTCGTGCG 58.826 43.478 0.00 0.00 0.00 5.34
541 543 5.411781 TCTCTTCTTTTCCTATTCTCGTGC 58.588 41.667 0.00 0.00 0.00 5.34
542 544 6.857956 TCTCTCTTCTTTTCCTATTCTCGTG 58.142 40.000 0.00 0.00 0.00 4.35
543 545 7.363443 CCTTCTCTCTTCTTTTCCTATTCTCGT 60.363 40.741 0.00 0.00 0.00 4.18
544 546 6.978080 CCTTCTCTCTTCTTTTCCTATTCTCG 59.022 42.308 0.00 0.00 0.00 4.04
545 547 7.847096 ACCTTCTCTCTTCTTTTCCTATTCTC 58.153 38.462 0.00 0.00 0.00 2.87
546 548 7.806680 ACCTTCTCTCTTCTTTTCCTATTCT 57.193 36.000 0.00 0.00 0.00 2.40
547 549 9.541143 CATACCTTCTCTCTTCTTTTCCTATTC 57.459 37.037 0.00 0.00 0.00 1.75
548 550 9.273137 TCATACCTTCTCTCTTCTTTTCCTATT 57.727 33.333 0.00 0.00 0.00 1.73
549 551 8.846423 TCATACCTTCTCTCTTCTTTTCCTAT 57.154 34.615 0.00 0.00 0.00 2.57
550 552 7.147811 GCTCATACCTTCTCTCTTCTTTTCCTA 60.148 40.741 0.00 0.00 0.00 2.94
551 553 6.351796 GCTCATACCTTCTCTCTTCTTTTCCT 60.352 42.308 0.00 0.00 0.00 3.36
552 554 5.815222 GCTCATACCTTCTCTCTTCTTTTCC 59.185 44.000 0.00 0.00 0.00 3.13
553 555 5.518487 CGCTCATACCTTCTCTCTTCTTTTC 59.482 44.000 0.00 0.00 0.00 2.29
554 556 5.186021 TCGCTCATACCTTCTCTCTTCTTTT 59.814 40.000 0.00 0.00 0.00 2.27
555 557 4.707448 TCGCTCATACCTTCTCTCTTCTTT 59.293 41.667 0.00 0.00 0.00 2.52
556 558 4.274147 TCGCTCATACCTTCTCTCTTCTT 58.726 43.478 0.00 0.00 0.00 2.52
557 559 3.882888 CTCGCTCATACCTTCTCTCTTCT 59.117 47.826 0.00 0.00 0.00 2.85
558 560 3.880490 TCTCGCTCATACCTTCTCTCTTC 59.120 47.826 0.00 0.00 0.00 2.87
559 561 3.630312 GTCTCGCTCATACCTTCTCTCTT 59.370 47.826 0.00 0.00 0.00 2.85
560 562 3.211045 GTCTCGCTCATACCTTCTCTCT 58.789 50.000 0.00 0.00 0.00 3.10
561 563 2.032377 CGTCTCGCTCATACCTTCTCTC 60.032 54.545 0.00 0.00 0.00 3.20
562 564 1.944024 CGTCTCGCTCATACCTTCTCT 59.056 52.381 0.00 0.00 0.00 3.10
563 565 2.392933 CGTCTCGCTCATACCTTCTC 57.607 55.000 0.00 0.00 0.00 2.87
602 604 1.423161 CTCTCCTCCATTCATTCCCCC 59.577 57.143 0.00 0.00 0.00 5.40
603 605 1.423161 CCTCTCCTCCATTCATTCCCC 59.577 57.143 0.00 0.00 0.00 4.81
604 606 2.371510 CTCCTCTCCTCCATTCATTCCC 59.628 54.545 0.00 0.00 0.00 3.97
605 607 3.044894 ACTCCTCTCCTCCATTCATTCC 58.955 50.000 0.00 0.00 0.00 3.01
606 608 3.070878 GGACTCCTCTCCTCCATTCATTC 59.929 52.174 0.00 0.00 0.00 2.67
607 609 3.044894 GGACTCCTCTCCTCCATTCATT 58.955 50.000 0.00 0.00 0.00 2.57
608 610 2.022625 TGGACTCCTCTCCTCCATTCAT 60.023 50.000 0.00 0.00 0.00 2.57
609 611 1.362584 TGGACTCCTCTCCTCCATTCA 59.637 52.381 0.00 0.00 0.00 2.57
610 612 2.038659 CTGGACTCCTCTCCTCCATTC 58.961 57.143 0.00 0.00 33.51 2.67
611 613 1.648568 TCTGGACTCCTCTCCTCCATT 59.351 52.381 0.00 0.00 33.51 3.16
612 614 1.313889 TCTGGACTCCTCTCCTCCAT 58.686 55.000 0.00 0.00 33.51 3.41
613 615 1.006519 CTTCTGGACTCCTCTCCTCCA 59.993 57.143 0.00 0.00 32.93 3.86
614 616 1.286553 TCTTCTGGACTCCTCTCCTCC 59.713 57.143 0.00 0.00 0.00 4.30
615 617 2.241176 TCTCTTCTGGACTCCTCTCCTC 59.759 54.545 0.00 0.00 0.00 3.71
616 618 2.283834 TCTCTTCTGGACTCCTCTCCT 58.716 52.381 0.00 0.00 0.00 3.69
617 619 2.818751 TCTCTTCTGGACTCCTCTCC 57.181 55.000 0.00 0.00 0.00 3.71
618 620 4.827284 CCTTATCTCTTCTGGACTCCTCTC 59.173 50.000 0.00 0.00 0.00 3.20
619 621 4.803452 CCTTATCTCTTCTGGACTCCTCT 58.197 47.826 0.00 0.00 0.00 3.69
620 622 3.320826 GCCTTATCTCTTCTGGACTCCTC 59.679 52.174 0.00 0.00 0.00 3.71
621 623 3.304829 GCCTTATCTCTTCTGGACTCCT 58.695 50.000 0.00 0.00 0.00 3.69
622 624 3.034635 TGCCTTATCTCTTCTGGACTCC 58.965 50.000 0.00 0.00 0.00 3.85
623 625 4.558496 CGATGCCTTATCTCTTCTGGACTC 60.558 50.000 0.00 0.00 33.44 3.36
624 626 3.320541 CGATGCCTTATCTCTTCTGGACT 59.679 47.826 0.00 0.00 33.44 3.85
625 627 3.648009 CGATGCCTTATCTCTTCTGGAC 58.352 50.000 0.00 0.00 33.44 4.02
626 628 2.036475 GCGATGCCTTATCTCTTCTGGA 59.964 50.000 0.00 0.00 33.44 3.86
627 629 2.224137 TGCGATGCCTTATCTCTTCTGG 60.224 50.000 0.00 0.00 33.44 3.86
628 630 3.058450 CTGCGATGCCTTATCTCTTCTG 58.942 50.000 0.00 0.00 33.44 3.02
629 631 2.697751 ACTGCGATGCCTTATCTCTTCT 59.302 45.455 0.00 0.00 33.44 2.85
630 632 2.799412 CACTGCGATGCCTTATCTCTTC 59.201 50.000 0.00 0.00 33.44 2.87
631 633 2.432146 TCACTGCGATGCCTTATCTCTT 59.568 45.455 0.00 0.00 33.44 2.85
632 634 2.034878 TCACTGCGATGCCTTATCTCT 58.965 47.619 0.00 0.00 33.44 3.10
633 635 2.402305 CTCACTGCGATGCCTTATCTC 58.598 52.381 0.00 0.00 33.44 2.75
634 636 1.069823 CCTCACTGCGATGCCTTATCT 59.930 52.381 0.00 0.00 33.44 1.98
635 637 1.069204 TCCTCACTGCGATGCCTTATC 59.931 52.381 0.00 0.00 0.00 1.75
636 638 1.069823 CTCCTCACTGCGATGCCTTAT 59.930 52.381 0.00 0.00 0.00 1.73
637 639 0.461548 CTCCTCACTGCGATGCCTTA 59.538 55.000 0.00 0.00 0.00 2.69
638 640 1.220206 CTCCTCACTGCGATGCCTT 59.780 57.895 0.00 0.00 0.00 4.35
639 641 1.954362 GACTCCTCACTGCGATGCCT 61.954 60.000 0.00 0.00 0.00 4.75
640 642 1.520342 GACTCCTCACTGCGATGCC 60.520 63.158 0.00 0.00 0.00 4.40
641 643 1.520342 GGACTCCTCACTGCGATGC 60.520 63.158 0.00 0.00 0.00 3.91
642 644 0.179116 CTGGACTCCTCACTGCGATG 60.179 60.000 0.00 0.00 0.00 3.84
643 645 0.323816 TCTGGACTCCTCACTGCGAT 60.324 55.000 0.00 0.00 0.00 4.58
644 646 0.539669 TTCTGGACTCCTCACTGCGA 60.540 55.000 0.00 0.00 0.00 5.10
645 647 0.108898 CTTCTGGACTCCTCACTGCG 60.109 60.000 0.00 0.00 0.00 5.18
646 648 1.204467 CTCTTCTGGACTCCTCACTGC 59.796 57.143 0.00 0.00 0.00 4.40
647 649 2.801483 TCTCTTCTGGACTCCTCACTG 58.199 52.381 0.00 0.00 0.00 3.66
648 650 3.756082 ATCTCTTCTGGACTCCTCACT 57.244 47.619 0.00 0.00 0.00 3.41
649 651 4.340950 CCTTATCTCTTCTGGACTCCTCAC 59.659 50.000 0.00 0.00 0.00 3.51
650 652 4.541705 CCTTATCTCTTCTGGACTCCTCA 58.458 47.826 0.00 0.00 0.00 3.86
651 653 3.320826 GCCTTATCTCTTCTGGACTCCTC 59.679 52.174 0.00 0.00 0.00 3.71
652 654 3.304829 GCCTTATCTCTTCTGGACTCCT 58.695 50.000 0.00 0.00 0.00 3.69
653 655 3.034635 TGCCTTATCTCTTCTGGACTCC 58.965 50.000 0.00 0.00 0.00 3.85
654 656 4.558496 CGATGCCTTATCTCTTCTGGACTC 60.558 50.000 0.00 0.00 33.44 3.36
655 657 3.320541 CGATGCCTTATCTCTTCTGGACT 59.679 47.826 0.00 0.00 33.44 3.85
656 658 3.648009 CGATGCCTTATCTCTTCTGGAC 58.352 50.000 0.00 0.00 33.44 4.02
657 659 2.036475 GCGATGCCTTATCTCTTCTGGA 59.964 50.000 0.00 0.00 33.44 3.86
658 660 2.224137 TGCGATGCCTTATCTCTTCTGG 60.224 50.000 0.00 0.00 33.44 3.86
659 661 3.058450 CTGCGATGCCTTATCTCTTCTG 58.942 50.000 0.00 0.00 33.44 3.02
660 662 2.036992 CCTGCGATGCCTTATCTCTTCT 59.963 50.000 0.00 0.00 33.44 2.85
661 663 2.036475 TCCTGCGATGCCTTATCTCTTC 59.964 50.000 0.00 0.00 33.44 2.87
662 664 2.042464 TCCTGCGATGCCTTATCTCTT 58.958 47.619 0.00 0.00 33.44 2.85
663 665 1.709578 TCCTGCGATGCCTTATCTCT 58.290 50.000 0.00 0.00 33.44 3.10
664 666 2.533266 TTCCTGCGATGCCTTATCTC 57.467 50.000 0.00 0.00 33.44 2.75
665 667 3.498774 ATTTCCTGCGATGCCTTATCT 57.501 42.857 0.00 0.00 33.44 1.98
666 668 5.335191 CCTTTATTTCCTGCGATGCCTTATC 60.335 44.000 0.00 0.00 0.00 1.75
667 669 4.520492 CCTTTATTTCCTGCGATGCCTTAT 59.480 41.667 0.00 0.00 0.00 1.73
668 670 3.882888 CCTTTATTTCCTGCGATGCCTTA 59.117 43.478 0.00 0.00 0.00 2.69
669 671 2.689983 CCTTTATTTCCTGCGATGCCTT 59.310 45.455 0.00 0.00 0.00 4.35
670 672 2.301346 CCTTTATTTCCTGCGATGCCT 58.699 47.619 0.00 0.00 0.00 4.75
671 673 1.269257 GCCTTTATTTCCTGCGATGCC 60.269 52.381 0.00 0.00 0.00 4.40
672 674 2.125461 GCCTTTATTTCCTGCGATGC 57.875 50.000 0.00 0.00 0.00 3.91
677 679 0.523335 CACGCGCCTTTATTTCCTGC 60.523 55.000 5.73 0.00 0.00 4.85
678 680 0.802494 ACACGCGCCTTTATTTCCTG 59.198 50.000 5.73 0.00 0.00 3.86
679 681 0.802494 CACACGCGCCTTTATTTCCT 59.198 50.000 5.73 0.00 0.00 3.36
680 682 0.800012 TCACACGCGCCTTTATTTCC 59.200 50.000 5.73 0.00 0.00 3.13
681 683 2.239201 GTTCACACGCGCCTTTATTTC 58.761 47.619 5.73 0.00 0.00 2.17
682 684 1.399215 CGTTCACACGCGCCTTTATTT 60.399 47.619 5.73 0.00 40.18 1.40
683 685 0.165079 CGTTCACACGCGCCTTTATT 59.835 50.000 5.73 0.00 40.18 1.40
684 686 0.668096 TCGTTCACACGCGCCTTTAT 60.668 50.000 5.73 0.00 46.70 1.40
685 687 1.279527 CTCGTTCACACGCGCCTTTA 61.280 55.000 5.73 0.00 46.70 1.85
686 688 2.586635 TCGTTCACACGCGCCTTT 60.587 55.556 5.73 0.00 46.70 3.11
687 689 3.036084 CTCGTTCACACGCGCCTT 61.036 61.111 5.73 0.00 46.70 4.35
691 693 2.168621 CTTGCTCGTTCACACGCG 59.831 61.111 3.53 3.53 46.70 6.01
692 694 2.127609 GCTTGCTCGTTCACACGC 60.128 61.111 0.00 0.00 46.70 5.34
694 696 1.201825 GTCGCTTGCTCGTTCACAC 59.798 57.895 0.00 0.00 0.00 3.82
695 697 2.300066 CGTCGCTTGCTCGTTCACA 61.300 57.895 0.00 0.00 0.00 3.58
696 698 2.465920 CGTCGCTTGCTCGTTCAC 59.534 61.111 0.00 0.00 0.00 3.18
697 699 3.403057 GCGTCGCTTGCTCGTTCA 61.403 61.111 10.68 0.00 0.00 3.18
698 700 4.470050 CGCGTCGCTTGCTCGTTC 62.470 66.667 16.36 0.00 0.00 3.95
699 701 4.994201 TCGCGTCGCTTGCTCGTT 62.994 61.111 16.36 0.00 0.00 3.85
710 712 3.170585 CTTTCGGTCGGTCGCGTC 61.171 66.667 5.77 0.00 0.00 5.19
711 713 3.489277 AACTTTCGGTCGGTCGCGT 62.489 57.895 5.77 0.00 0.00 6.01
712 714 2.713894 GAACTTTCGGTCGGTCGCG 61.714 63.158 0.00 0.00 0.00 5.87
713 715 2.713894 CGAACTTTCGGTCGGTCGC 61.714 63.158 3.35 0.00 46.30 5.19
714 716 3.444642 CGAACTTTCGGTCGGTCG 58.555 61.111 3.35 0.00 46.30 4.79
740 742 0.660300 GGTAAACGCTTGTGTGCTGC 60.660 55.000 0.00 0.00 0.00 5.25
741 743 0.660488 TGGTAAACGCTTGTGTGCTG 59.340 50.000 0.00 0.00 0.00 4.41
742 744 1.384525 TTGGTAAACGCTTGTGTGCT 58.615 45.000 0.00 0.00 0.00 4.40
743 745 2.196295 TTTGGTAAACGCTTGTGTGC 57.804 45.000 0.00 0.00 0.00 4.57
768 770 5.879223 GTCAAACATGATGACCTGAAGAGAT 59.121 40.000 19.19 0.00 41.02 2.75
772 774 5.694231 TTGTCAAACATGATGACCTGAAG 57.306 39.130 23.81 0.00 45.19 3.02
785 787 3.735240 GCATTCGATTTGCTTGTCAAACA 59.265 39.130 12.26 0.00 46.36 2.83
796 798 3.113322 CTGGCTCATTGCATTCGATTTG 58.887 45.455 0.00 0.00 45.15 2.32
882 885 4.160252 GGGGAATAAACATGCTTCACACAT 59.840 41.667 0.00 0.00 0.00 3.21
891 894 1.358759 CGGCGGGGAATAAACATGC 59.641 57.895 0.00 0.00 0.00 4.06
1273 1276 3.382546 TGCGGAACCTAACATAGAGTACC 59.617 47.826 0.00 0.00 0.00 3.34
1311 1340 5.719563 TCAAGTACCACTGTATCAGGATCAA 59.280 40.000 0.00 0.00 35.51 2.57
1312 1341 5.127194 GTCAAGTACCACTGTATCAGGATCA 59.873 44.000 0.00 0.00 35.51 2.92
1313 1342 5.593010 GTCAAGTACCACTGTATCAGGATC 58.407 45.833 1.90 0.00 35.51 3.36
1314 1343 5.599999 GTCAAGTACCACTGTATCAGGAT 57.400 43.478 1.90 0.00 35.51 3.24
1435 1465 1.001974 TGCTGCGTGGAGTAGAATGTT 59.998 47.619 0.00 0.00 34.21 2.71
1478 1510 7.386848 TGCTAAGGAACTATACAAGAACACAAC 59.613 37.037 0.00 0.00 38.49 3.32
1500 1534 2.104111 CGGGGATTACCATGACTTGCTA 59.896 50.000 0.00 0.00 42.91 3.49
1588 1622 2.662596 CAGGAGGCGGCAACACTA 59.337 61.111 13.08 0.00 0.00 2.74
1600 1642 3.883744 AAACCGCACGAGGCAGGAG 62.884 63.158 16.18 2.08 45.17 3.69
1604 1646 3.283684 CCAAAACCGCACGAGGCA 61.284 61.111 0.00 0.00 45.17 4.75
1606 1648 2.966309 GAGCCAAAACCGCACGAGG 61.966 63.158 0.00 0.00 37.30 4.63
1607 1649 1.577328 ATGAGCCAAAACCGCACGAG 61.577 55.000 0.00 0.00 0.00 4.18
1654 1744 4.833380 ACTGAAGTAGTAAGCAGGAACTCA 59.167 41.667 0.00 0.00 38.04 3.41
1748 1846 8.680903 ACAAGAAGGCTAATTCTAACATCAATG 58.319 33.333 0.00 0.00 38.59 2.82
1785 1883 2.592194 TGTCGTGTCATTCTTCGTAGC 58.408 47.619 0.00 0.00 0.00 3.58
1787 1885 3.571571 CCTTGTCGTGTCATTCTTCGTA 58.428 45.455 0.00 0.00 0.00 3.43
2037 2136 4.812308 CATGCGTGCATATGAGCG 57.188 55.556 6.97 10.67 37.31 5.03
2067 2166 8.836268 AAATACATTTTGTCTGTTTGCATGAT 57.164 26.923 0.00 0.00 0.00 2.45
2091 2190 9.168451 CAATCTGTAACAGTCTCTACTCTCTAA 57.832 37.037 0.00 0.00 31.97 2.10
2107 2206 3.500680 TGAAAGCGGGTTCAATCTGTAAC 59.499 43.478 0.00 0.00 34.59 2.50
2141 2240 5.250200 AGTGGTCTACTTTGACAAACACAA 58.750 37.500 15.39 0.00 35.67 3.33
2152 2251 6.496144 ACTTCCAAACTAGTGGTCTACTTT 57.504 37.500 0.00 0.00 40.89 2.66
2352 2484 6.375174 CAGTTTCTGTTCACATCAATCCCATA 59.625 38.462 0.00 0.00 0.00 2.74
2355 2487 4.082571 CCAGTTTCTGTTCACATCAATCCC 60.083 45.833 0.00 0.00 0.00 3.85
2409 2541 9.791820 CATATAAACTTTGTCTGATTGCATGAA 57.208 29.630 0.00 0.00 0.00 2.57
2433 2565 7.499321 TTGGTACGTTCAATCTGTTTTACAT 57.501 32.000 0.00 0.00 0.00 2.29
2434 2566 6.922247 TTGGTACGTTCAATCTGTTTTACA 57.078 33.333 0.00 0.00 0.00 2.41
2490 2622 4.042062 AGACATGAACTCCAGGATGACAAA 59.958 41.667 0.00 0.00 39.69 2.83
2511 2718 1.402852 CGCGATGTTCTTGGAGTGAGA 60.403 52.381 0.00 0.00 0.00 3.27
2563 2770 7.170828 TGTCAGCATTTAGTACACAGTAAACAG 59.829 37.037 0.00 0.00 33.43 3.16
2639 2846 5.047377 ACAATTAAGGTTTTGATGATGCCGT 60.047 36.000 0.00 0.00 0.00 5.68
2658 2868 6.014327 AGGTGGCAAATTCATGAGTAACAATT 60.014 34.615 0.00 0.00 0.00 2.32
2782 2992 6.405842 GGAAACAAAGGAAGCTCTTCAAGAAA 60.406 38.462 11.27 0.00 41.20 2.52
2924 3134 2.029290 GTCTTGGTCCGAGAAGTAGCAA 60.029 50.000 10.68 0.00 0.00 3.91
2971 3181 1.357137 TGTACTCCCTGAATGCACCA 58.643 50.000 0.00 0.00 0.00 4.17
3131 3341 0.454600 TCCTCGACGGTCTTGTATGC 59.545 55.000 6.57 0.00 0.00 3.14
3133 3343 1.101331 GGTCCTCGACGGTCTTGTAT 58.899 55.000 6.57 0.00 32.65 2.29
3175 3385 2.022718 ACTGCTTCAGAACTCCCTCT 57.977 50.000 0.29 0.00 35.18 3.69
3312 3522 6.257423 CAGACTATGATATCTGCATCGACTC 58.743 44.000 3.98 0.00 36.22 3.36
3360 3573 6.877322 TCCAGCAAACAAGGTAGTAGAAATAC 59.123 38.462 0.00 0.00 0.00 1.89
3370 3583 1.145571 AGGGTCCAGCAAACAAGGTA 58.854 50.000 0.00 0.00 0.00 3.08
3371 3584 0.468029 CAGGGTCCAGCAAACAAGGT 60.468 55.000 0.00 0.00 0.00 3.50
3372 3585 1.809567 GCAGGGTCCAGCAAACAAGG 61.810 60.000 0.00 0.00 0.00 3.61
3373 3586 0.825010 AGCAGGGTCCAGCAAACAAG 60.825 55.000 7.13 0.00 0.00 3.16
3374 3587 0.396974 AAGCAGGGTCCAGCAAACAA 60.397 50.000 7.13 0.00 0.00 2.83
3545 3758 0.464036 ACAGCTGGTTGTTCTCGACA 59.536 50.000 19.93 0.00 36.19 4.35
3638 3851 4.518970 GCTTGTATCTTGTTGACCCTGAAA 59.481 41.667 0.00 0.00 0.00 2.69
3762 3975 8.880878 TCTTTTACAAGCCAAGGAAAATTAAC 57.119 30.769 0.00 0.00 0.00 2.01
3844 4140 9.008965 TGTTGCATACTCTGTATTTTTATGTGT 57.991 29.630 0.00 0.00 0.00 3.72
3994 4291 8.615878 TTTAGTGCATGTAAAGTGTTCTACAT 57.384 30.769 0.00 0.00 38.91 2.29
4171 4474 1.524008 AAGGGAAAAAGGCCGCGAAG 61.524 55.000 8.23 0.00 0.00 3.79
4177 4480 1.342074 AGCAGAAAGGGAAAAAGGCC 58.658 50.000 0.00 0.00 0.00 5.19
4342 4645 0.596082 TTTCAGCCGCTAAAACTGCC 59.404 50.000 0.00 0.00 0.00 4.85
4423 4726 7.326454 TCTTCTACTCATTCTTGAACATGGAG 58.674 38.462 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.