Multiple sequence alignment - TraesCS5B01G092700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G092700 chr5B 100.000 3914 0 0 1 3914 121663594 121659681 0.000000e+00 7228.0
1 TraesCS5B01G092700 chr5D 94.456 2471 99 15 632 3082 111610019 111612471 0.000000e+00 3770.0
2 TraesCS5B01G092700 chr5A 93.363 1130 44 10 813 1923 115630947 115629830 0.000000e+00 1642.0
3 TraesCS5B01G092700 chr5A 90.081 1230 68 24 1954 3150 115624164 115622956 0.000000e+00 1546.0
4 TraesCS5B01G092700 chr5A 95.748 635 26 1 1 634 689439257 689438623 0.000000e+00 1022.0
5 TraesCS5B01G092700 chr5A 83.969 393 55 3 3149 3534 115622917 115622526 1.720000e-98 370.0
6 TraesCS5B01G092700 chr5A 74.912 283 55 13 3386 3661 304655488 304655761 8.890000e-22 115.0
7 TraesCS5B01G092700 chr2B 96.573 642 21 1 1 641 776442101 776441460 0.000000e+00 1062.0
8 TraesCS5B01G092700 chr2B 78.610 187 33 7 3526 3708 49616570 49616387 2.470000e-22 117.0
9 TraesCS5B01G092700 chr2B 73.968 315 61 18 3400 3702 135705214 135705519 1.490000e-19 108.0
10 TraesCS5B01G092700 chrUn 95.433 635 28 1 1 634 430918046 430918680 0.000000e+00 1011.0
11 TraesCS5B01G092700 chr2A 94.053 639 28 7 1 635 775942776 775942144 0.000000e+00 961.0
12 TraesCS5B01G092700 chr2A 93.868 636 37 2 1 635 50266906 50266272 0.000000e+00 957.0
13 TraesCS5B01G092700 chr2A 82.278 79 12 2 3387 3464 84606062 84606139 2.520000e-07 67.6
14 TraesCS5B01G092700 chr7D 93.250 637 38 4 1 633 64002648 64003283 0.000000e+00 933.0
15 TraesCS5B01G092700 chr1B 92.260 646 39 8 1 639 427475509 427474868 0.000000e+00 905.0
16 TraesCS5B01G092700 chr6A 92.332 639 43 4 1 635 14052204 14052840 0.000000e+00 904.0
17 TraesCS5B01G092700 chr7A 91.379 638 49 4 1 634 699788050 699788685 0.000000e+00 869.0
18 TraesCS5B01G092700 chr7A 94.872 39 2 0 3392 3430 651792177 651792215 1.170000e-05 62.1
19 TraesCS5B01G092700 chr3A 74.670 379 75 18 3334 3702 203671580 203671213 8.760000e-32 148.0
20 TraesCS5B01G092700 chr3A 74.487 341 69 16 3387 3718 382983917 382984248 8.820000e-27 132.0
21 TraesCS5B01G092700 chr3B 76.016 246 44 12 3490 3727 382693268 382693506 3.200000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G092700 chr5B 121659681 121663594 3913 True 7228 7228 100.000 1 3914 1 chr5B.!!$R1 3913
1 TraesCS5B01G092700 chr5D 111610019 111612471 2452 False 3770 3770 94.456 632 3082 1 chr5D.!!$F1 2450
2 TraesCS5B01G092700 chr5A 115629830 115630947 1117 True 1642 1642 93.363 813 1923 1 chr5A.!!$R1 1110
3 TraesCS5B01G092700 chr5A 689438623 689439257 634 True 1022 1022 95.748 1 634 1 chr5A.!!$R2 633
4 TraesCS5B01G092700 chr5A 115622526 115624164 1638 True 958 1546 87.025 1954 3534 2 chr5A.!!$R3 1580
5 TraesCS5B01G092700 chr2B 776441460 776442101 641 True 1062 1062 96.573 1 641 1 chr2B.!!$R2 640
6 TraesCS5B01G092700 chrUn 430918046 430918680 634 False 1011 1011 95.433 1 634 1 chrUn.!!$F1 633
7 TraesCS5B01G092700 chr2A 775942144 775942776 632 True 961 961 94.053 1 635 1 chr2A.!!$R2 634
8 TraesCS5B01G092700 chr2A 50266272 50266906 634 True 957 957 93.868 1 635 1 chr2A.!!$R1 634
9 TraesCS5B01G092700 chr7D 64002648 64003283 635 False 933 933 93.250 1 633 1 chr7D.!!$F1 632
10 TraesCS5B01G092700 chr1B 427474868 427475509 641 True 905 905 92.260 1 639 1 chr1B.!!$R1 638
11 TraesCS5B01G092700 chr6A 14052204 14052840 636 False 904 904 92.332 1 635 1 chr6A.!!$F1 634
12 TraesCS5B01G092700 chr7A 699788050 699788685 635 False 869 869 91.379 1 634 1 chr7A.!!$F2 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
712 723 1.794714 AGGAGGTGAGGCGAATGTAT 58.205 50.000 0.0 0.0 0.00 2.29 F
1696 1718 1.203052 TCCGGTGTCGTATTCAAGGTC 59.797 52.381 0.0 0.0 33.95 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1954 0.522705 TCTTAGAAGCTGTACGCGCG 60.523 55.0 30.96 30.96 45.59 6.86 R
3301 3413 0.107456 CTGTTGGCTGAGACAGGTGT 59.893 55.0 0.00 0.00 39.60 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
689 700 4.948341 AAAAACCAACATACAAGGGACC 57.052 40.909 0.00 0.00 0.00 4.46
712 723 1.794714 AGGAGGTGAGGCGAATGTAT 58.205 50.000 0.00 0.00 0.00 2.29
719 730 2.866762 GTGAGGCGAATGTATCAACTCC 59.133 50.000 0.00 0.00 32.35 3.85
734 745 8.272173 TGTATCAACTCCCCTTAAAAATAGAGG 58.728 37.037 0.00 0.00 0.00 3.69
909 920 3.444916 TGCGTCTCTCCAATTAATCGTC 58.555 45.455 0.00 0.00 0.00 4.20
915 926 4.130118 CTCTCCAATTAATCGTCCCCTTG 58.870 47.826 0.00 0.00 0.00 3.61
1003 1015 5.272402 TCTCTTTAGATCCTGTCACCATGA 58.728 41.667 0.00 0.00 0.00 3.07
1320 1341 2.389715 GTGAGGTATGTAGTGAGCCCT 58.610 52.381 0.00 0.00 0.00 5.19
1427 1449 1.539712 GCCCGGCACCTACAAGTATAC 60.540 57.143 3.91 0.00 0.00 1.47
1432 1454 4.202223 CCGGCACCTACAAGTATACATCTT 60.202 45.833 5.50 0.00 0.00 2.40
1472 1494 9.507280 AGATGTTGATCAAATTATAAGTTTGCG 57.493 29.630 10.35 0.00 36.69 4.85
1696 1718 1.203052 TCCGGTGTCGTATTCAAGGTC 59.797 52.381 0.00 0.00 33.95 3.85
1727 1749 9.506042 AATCACCATCTTTTAGGGGAAATTAAT 57.494 29.630 0.00 0.00 41.46 1.40
1767 1789 3.181487 ACTGCGAACAAAATTGAGTTGCT 60.181 39.130 0.00 0.00 31.72 3.91
1794 1816 5.624281 CGGGGAATGTATGCAAACAAAATCT 60.624 40.000 0.00 0.00 32.02 2.40
1907 1938 5.481473 CCAAGCATTTAGGCCCATACAATAT 59.519 40.000 0.00 0.00 0.00 1.28
1926 1957 7.481642 ACAATATTCTTATAGGGAGATACGCG 58.518 38.462 3.53 3.53 36.53 6.01
1930 1961 2.385013 TATAGGGAGATACGCGCGTA 57.615 50.000 40.65 40.65 36.53 4.42
1945 1976 1.562017 GCGTACAGCTTCTAAGAGCC 58.438 55.000 0.00 0.00 43.74 4.70
1952 1983 3.201708 ACAGCTTCTAAGAGCCCATGAAT 59.798 43.478 0.00 0.00 43.74 2.57
1957 1988 4.591321 TCTAAGAGCCCATGAATTTGGT 57.409 40.909 0.00 0.00 34.77 3.67
2096 2130 1.470996 AACCACGCACCATTGGCAAT 61.471 50.000 6.96 6.96 36.20 3.56
2288 2327 4.403752 GGTCCCTCTACACGGTAATTAACT 59.596 45.833 0.00 0.00 0.00 2.24
2357 2396 7.490962 AGGCAATGATATTTGATGCATTTTG 57.509 32.000 0.00 0.00 38.73 2.44
2380 2419 4.088762 GTGACACCCACGCGCATG 62.089 66.667 5.73 0.58 35.86 4.06
2535 2574 0.755686 GACTGGGCCAGATCTACCTG 59.244 60.000 38.99 11.46 35.18 4.00
2648 2687 1.536284 CGAGAAGCCAGATCGGTAACC 60.536 57.143 5.66 0.00 36.97 2.85
2650 2689 1.207329 AGAAGCCAGATCGGTAACCAC 59.793 52.381 5.66 0.00 36.97 4.16
2651 2690 0.252197 AAGCCAGATCGGTAACCACC 59.748 55.000 5.66 0.00 41.93 4.61
2672 2711 0.784778 CACGTGTTTCCTCTCGCTTC 59.215 55.000 7.58 0.00 0.00 3.86
2702 2742 4.406069 CTCACCATTTTACATCGCACAAG 58.594 43.478 0.00 0.00 0.00 3.16
2715 2757 1.864176 CACAAGTTAACCGACGGGC 59.136 57.895 20.00 5.40 36.48 6.13
2938 2980 5.046910 TGCTCAAAAATGCAACTACTAGC 57.953 39.130 0.00 0.00 36.15 3.42
2943 2985 5.354234 TCAAAAATGCAACTACTAGCTAGCC 59.646 40.000 20.91 3.34 0.00 3.93
2953 2995 3.550437 ACTAGCTAGCCCATTTGTCAG 57.450 47.619 20.91 0.00 0.00 3.51
2954 2996 2.840651 ACTAGCTAGCCCATTTGTCAGT 59.159 45.455 20.91 0.00 0.00 3.41
2967 3009 5.291128 CCATTTGTCAGTAACTCGTGTATCC 59.709 44.000 0.00 0.00 0.00 2.59
2990 3032 4.377841 CGAGATCTCCACTTGTTTTTGAGC 60.378 45.833 17.13 0.00 0.00 4.26
3089 3153 9.639563 TCAACAGATGATTTAATATAGGGCAAA 57.360 29.630 0.00 0.00 31.50 3.68
3092 3156 8.526147 ACAGATGATTTAATATAGGGCAAATGC 58.474 33.333 0.00 0.00 41.14 3.56
3123 3187 6.418057 ACTGATTTTTAAGGCATTTGGACA 57.582 33.333 0.00 0.00 0.00 4.02
3124 3188 6.458210 ACTGATTTTTAAGGCATTTGGACAG 58.542 36.000 0.00 0.00 0.00 3.51
3129 3194 7.784633 TTTTTAAGGCATTTGGACAGAAAAG 57.215 32.000 0.00 0.00 0.00 2.27
3173 3278 2.419021 GCAACAAATATGCACTGGCCAT 60.419 45.455 5.51 0.00 43.29 4.40
3174 3279 3.191669 CAACAAATATGCACTGGCCATG 58.808 45.455 5.51 8.43 40.13 3.66
3191 3299 1.142465 CATGGGGCTGCTGAATAGACT 59.858 52.381 0.00 0.00 0.00 3.24
3203 3311 1.262683 GAATAGACTGAAGCCATGCGC 59.737 52.381 0.00 0.00 37.98 6.09
3238 3350 0.808755 AATTTTCGACCATCGCACCC 59.191 50.000 0.00 0.00 40.21 4.61
3247 3359 2.108976 ATCGCACCCGCCACTATG 59.891 61.111 0.00 0.00 33.11 2.23
3254 3366 2.901840 CCGCCACTATGCCGCAAT 60.902 61.111 0.00 0.00 0.00 3.56
3258 3370 2.008268 GCCACTATGCCGCAATTGCT 62.008 55.000 26.86 11.71 39.32 3.91
3260 3372 0.452987 CACTATGCCGCAATTGCTGT 59.547 50.000 26.86 12.71 39.32 4.40
3261 3373 0.734889 ACTATGCCGCAATTGCTGTC 59.265 50.000 26.86 16.58 39.32 3.51
3263 3375 0.742635 TATGCCGCAATTGCTGTCGA 60.743 50.000 26.86 10.21 39.32 4.20
3273 3385 2.024871 GCTGTCGACGGGATCTCG 59.975 66.667 25.20 14.88 0.00 4.04
3296 3408 4.592192 CGCCGCCATGAGTCCGAT 62.592 66.667 0.00 0.00 0.00 4.18
3297 3409 2.969238 GCCGCCATGAGTCCGATG 60.969 66.667 0.00 0.00 0.00 3.84
3298 3410 2.501128 CCGCCATGAGTCCGATGT 59.499 61.111 0.00 0.00 0.00 3.06
3299 3411 1.884464 CCGCCATGAGTCCGATGTG 60.884 63.158 0.00 0.00 0.00 3.21
3300 3412 2.528743 CGCCATGAGTCCGATGTGC 61.529 63.158 0.00 0.00 0.00 4.57
3301 3413 1.450134 GCCATGAGTCCGATGTGCA 60.450 57.895 0.00 0.00 0.00 4.57
3302 3414 1.709147 GCCATGAGTCCGATGTGCAC 61.709 60.000 10.75 10.75 0.00 4.57
3306 3418 1.293498 GAGTCCGATGTGCACACCT 59.707 57.895 24.37 7.29 0.00 4.00
3333 3445 1.303309 CCAACAGATGGGATCTTCGC 58.697 55.000 0.00 0.00 46.27 4.70
3341 3453 2.174319 GGGATCTTCGCGGAACAGC 61.174 63.158 6.13 0.00 0.00 4.40
3354 3466 3.530910 AACAGCAGCTTACGGCGGT 62.531 57.895 13.24 1.39 46.03 5.68
3368 3480 2.350498 ACGGCGGTGATAAAATTCTTCG 59.650 45.455 13.24 0.00 0.00 3.79
3380 3492 8.912988 TGATAAAATTCTTCGGAAAATATGGCT 58.087 29.630 0.00 0.00 37.51 4.75
3381 3493 9.185192 GATAAAATTCTTCGGAAAATATGGCTG 57.815 33.333 0.00 0.00 37.51 4.85
3382 3494 5.520376 AATTCTTCGGAAAATATGGCTGG 57.480 39.130 0.00 0.00 37.51 4.85
3385 3497 1.217916 TCGGAAAATATGGCTGGGGA 58.782 50.000 0.00 0.00 0.00 4.81
3389 3501 3.005791 CGGAAAATATGGCTGGGGATTTC 59.994 47.826 0.00 0.00 0.00 2.17
3393 3505 4.927267 AATATGGCTGGGGATTTCGATA 57.073 40.909 0.00 0.00 0.00 2.92
3395 3507 2.859165 TGGCTGGGGATTTCGATATC 57.141 50.000 7.27 7.27 0.00 1.63
3401 3513 5.221541 GGCTGGGGATTTCGATATCTATAGG 60.222 48.000 14.34 4.65 0.00 2.57
3431 3543 1.026718 GGTGGAATCAGGTCAAGGCG 61.027 60.000 0.00 0.00 0.00 5.52
3439 3551 0.034896 CAGGTCAAGGCGGTGTAAGT 59.965 55.000 0.00 0.00 0.00 2.24
3442 3554 1.302192 TCAAGGCGGTGTAAGTGGC 60.302 57.895 0.00 0.00 0.00 5.01
3444 3556 3.562732 AAGGCGGTGTAAGTGGCCC 62.563 63.158 0.00 0.00 46.75 5.80
3524 3636 4.017126 TGGCTTCTTGTCTCGATCTCTTA 58.983 43.478 0.00 0.00 0.00 2.10
3534 3646 3.312973 TCTCGATCTCTTACGAAGCTTCC 59.687 47.826 20.62 3.48 38.05 3.46
3535 3647 2.358267 TCGATCTCTTACGAAGCTTCCC 59.642 50.000 20.62 0.00 35.62 3.97
3536 3648 2.733517 GATCTCTTACGAAGCTTCCCG 58.266 52.381 20.62 13.16 0.00 5.14
3537 3649 1.542492 TCTCTTACGAAGCTTCCCGT 58.458 50.000 20.62 18.21 42.15 5.28
3538 3650 1.471684 TCTCTTACGAAGCTTCCCGTC 59.528 52.381 20.62 0.00 39.86 4.79
3539 3651 1.473278 CTCTTACGAAGCTTCCCGTCT 59.527 52.381 20.62 0.00 39.86 4.18
3540 3652 1.891150 TCTTACGAAGCTTCCCGTCTT 59.109 47.619 20.62 1.30 39.86 3.01
3541 3653 2.298163 TCTTACGAAGCTTCCCGTCTTT 59.702 45.455 20.62 0.00 39.86 2.52
3542 3654 2.358939 TACGAAGCTTCCCGTCTTTC 57.641 50.000 20.62 0.00 39.86 2.62
3543 3655 0.680061 ACGAAGCTTCCCGTCTTTCT 59.320 50.000 20.62 0.00 33.23 2.52
3544 3656 1.070289 ACGAAGCTTCCCGTCTTTCTT 59.930 47.619 20.62 0.00 33.23 2.52
3545 3657 1.461127 CGAAGCTTCCCGTCTTTCTTG 59.539 52.381 20.62 0.00 0.00 3.02
3546 3658 2.495084 GAAGCTTCCCGTCTTTCTTGT 58.505 47.619 15.97 0.00 0.00 3.16
3547 3659 2.640316 AGCTTCCCGTCTTTCTTGTT 57.360 45.000 0.00 0.00 0.00 2.83
3548 3660 2.222027 AGCTTCCCGTCTTTCTTGTTG 58.778 47.619 0.00 0.00 0.00 3.33
3549 3661 1.335051 GCTTCCCGTCTTTCTTGTTGC 60.335 52.381 0.00 0.00 0.00 4.17
3550 3662 2.222027 CTTCCCGTCTTTCTTGTTGCT 58.778 47.619 0.00 0.00 0.00 3.91
3551 3663 1.878953 TCCCGTCTTTCTTGTTGCTC 58.121 50.000 0.00 0.00 0.00 4.26
3552 3664 1.140052 TCCCGTCTTTCTTGTTGCTCA 59.860 47.619 0.00 0.00 0.00 4.26
3553 3665 1.946768 CCCGTCTTTCTTGTTGCTCAA 59.053 47.619 0.00 0.00 34.61 3.02
3554 3666 2.357637 CCCGTCTTTCTTGTTGCTCAAA 59.642 45.455 0.00 0.00 35.48 2.69
3555 3667 3.181491 CCCGTCTTTCTTGTTGCTCAAAA 60.181 43.478 0.00 0.00 35.48 2.44
3556 3668 4.420168 CCGTCTTTCTTGTTGCTCAAAAA 58.580 39.130 0.00 0.00 35.48 1.94
3579 3691 8.496707 AAAATCGTATTAAATCGGTAAGTGGT 57.503 30.769 3.54 0.00 0.00 4.16
3580 3692 8.496707 AAATCGTATTAAATCGGTAAGTGGTT 57.503 30.769 3.54 0.00 0.00 3.67
3581 3693 8.496707 AATCGTATTAAATCGGTAAGTGGTTT 57.503 30.769 3.54 0.00 0.00 3.27
3582 3694 7.293402 TCGTATTAAATCGGTAAGTGGTTTG 57.707 36.000 3.54 0.00 0.00 2.93
3583 3695 7.095910 TCGTATTAAATCGGTAAGTGGTTTGA 58.904 34.615 3.54 0.00 0.00 2.69
3584 3696 7.063308 TCGTATTAAATCGGTAAGTGGTTTGAC 59.937 37.037 3.54 0.00 0.00 3.18
3585 3697 5.945466 TTAAATCGGTAAGTGGTTTGACC 57.055 39.130 0.00 0.00 39.22 4.02
3586 3698 3.782656 AATCGGTAAGTGGTTTGACCT 57.217 42.857 0.00 0.00 39.58 3.85
3587 3699 2.825861 TCGGTAAGTGGTTTGACCTC 57.174 50.000 0.00 0.00 39.58 3.85
3588 3700 1.345415 TCGGTAAGTGGTTTGACCTCC 59.655 52.381 0.00 0.00 39.58 4.30
3589 3701 1.071071 CGGTAAGTGGTTTGACCTCCA 59.929 52.381 0.00 0.00 39.58 3.86
3590 3702 2.290071 CGGTAAGTGGTTTGACCTCCAT 60.290 50.000 0.00 0.00 39.58 3.41
3591 3703 3.055675 CGGTAAGTGGTTTGACCTCCATA 60.056 47.826 0.00 0.00 39.58 2.74
3592 3704 4.383770 CGGTAAGTGGTTTGACCTCCATAT 60.384 45.833 0.00 0.00 39.58 1.78
3593 3705 5.163385 CGGTAAGTGGTTTGACCTCCATATA 60.163 44.000 0.00 0.00 39.58 0.86
3594 3706 6.463897 CGGTAAGTGGTTTGACCTCCATATAT 60.464 42.308 0.00 0.00 39.58 0.86
3595 3707 7.256048 CGGTAAGTGGTTTGACCTCCATATATA 60.256 40.741 0.00 0.00 39.58 0.86
3596 3708 8.603304 GGTAAGTGGTTTGACCTCCATATATAT 58.397 37.037 0.00 0.00 39.58 0.86
3598 3710 8.924511 AAGTGGTTTGACCTCCATATATATTG 57.075 34.615 0.00 0.00 39.58 1.90
3599 3711 8.275187 AGTGGTTTGACCTCCATATATATTGA 57.725 34.615 0.00 0.00 39.58 2.57
3600 3712 8.894592 AGTGGTTTGACCTCCATATATATTGAT 58.105 33.333 0.00 0.00 39.58 2.57
3601 3713 9.520515 GTGGTTTGACCTCCATATATATTGATT 57.479 33.333 0.00 0.00 39.58 2.57
3642 3754 8.958119 ACAAGTAGAAAACAATAACTCAGACA 57.042 30.769 0.00 0.00 0.00 3.41
3643 3755 9.046296 ACAAGTAGAAAACAATAACTCAGACAG 57.954 33.333 0.00 0.00 0.00 3.51
3644 3756 9.046296 CAAGTAGAAAACAATAACTCAGACAGT 57.954 33.333 0.00 0.00 36.64 3.55
3645 3757 8.594881 AGTAGAAAACAATAACTCAGACAGTG 57.405 34.615 0.00 0.00 34.56 3.66
3646 3758 6.305693 AGAAAACAATAACTCAGACAGTGC 57.694 37.500 0.00 0.00 34.56 4.40
3647 3759 5.822519 AGAAAACAATAACTCAGACAGTGCA 59.177 36.000 0.00 0.00 34.56 4.57
3648 3760 5.424121 AAACAATAACTCAGACAGTGCAC 57.576 39.130 9.40 9.40 34.56 4.57
3649 3761 4.342862 ACAATAACTCAGACAGTGCACT 57.657 40.909 15.25 15.25 34.56 4.40
3650 3762 5.468540 ACAATAACTCAGACAGTGCACTA 57.531 39.130 21.20 1.97 34.56 2.74
3651 3763 5.853936 ACAATAACTCAGACAGTGCACTAA 58.146 37.500 21.20 2.04 34.56 2.24
3652 3764 6.288294 ACAATAACTCAGACAGTGCACTAAA 58.712 36.000 21.20 2.40 34.56 1.85
3653 3765 6.936900 ACAATAACTCAGACAGTGCACTAAAT 59.063 34.615 21.20 8.20 34.56 1.40
3654 3766 7.445402 ACAATAACTCAGACAGTGCACTAAATT 59.555 33.333 21.20 9.57 34.56 1.82
3655 3767 8.935844 CAATAACTCAGACAGTGCACTAAATTA 58.064 33.333 21.20 11.35 34.56 1.40
3656 3768 9.502091 AATAACTCAGACAGTGCACTAAATTAA 57.498 29.630 21.20 2.98 34.56 1.40
3657 3769 7.986085 AACTCAGACAGTGCACTAAATTAAT 57.014 32.000 21.20 0.40 34.56 1.40
3659 3771 8.709386 ACTCAGACAGTGCACTAAATTAATAG 57.291 34.615 21.20 11.72 32.26 1.73
3660 3772 7.766278 ACTCAGACAGTGCACTAAATTAATAGG 59.234 37.037 21.20 5.45 32.26 2.57
3661 3773 7.620880 TCAGACAGTGCACTAAATTAATAGGT 58.379 34.615 21.20 9.03 0.00 3.08
3662 3774 8.100791 TCAGACAGTGCACTAAATTAATAGGTT 58.899 33.333 21.20 0.00 0.00 3.50
3663 3775 9.378551 CAGACAGTGCACTAAATTAATAGGTTA 57.621 33.333 21.20 0.00 0.00 2.85
3664 3776 9.601217 AGACAGTGCACTAAATTAATAGGTTAG 57.399 33.333 21.20 3.49 0.00 2.34
3665 3777 9.379791 GACAGTGCACTAAATTAATAGGTTAGT 57.620 33.333 21.20 7.05 38.34 2.24
3752 3864 9.896645 ATTTTGAGATGTATCACTACTCATTGT 57.103 29.630 0.00 0.00 37.43 2.71
3753 3865 9.725019 TTTTGAGATGTATCACTACTCATTGTT 57.275 29.630 0.00 0.00 37.43 2.83
3754 3866 8.707938 TTGAGATGTATCACTACTCATTGTTG 57.292 34.615 0.00 0.00 37.43 3.33
3755 3867 8.066612 TGAGATGTATCACTACTCATTGTTGA 57.933 34.615 0.00 0.00 33.57 3.18
3766 3878 3.213206 TCATTGTTGAGACCTTGTGCT 57.787 42.857 0.00 0.00 0.00 4.40
3767 3879 3.554934 TCATTGTTGAGACCTTGTGCTT 58.445 40.909 0.00 0.00 0.00 3.91
3768 3880 3.316029 TCATTGTTGAGACCTTGTGCTTG 59.684 43.478 0.00 0.00 0.00 4.01
3769 3881 1.024271 TGTTGAGACCTTGTGCTTGC 58.976 50.000 0.00 0.00 0.00 4.01
3770 3882 0.312102 GTTGAGACCTTGTGCTTGCC 59.688 55.000 0.00 0.00 0.00 4.52
3771 3883 1.165907 TTGAGACCTTGTGCTTGCCG 61.166 55.000 0.00 0.00 0.00 5.69
3772 3884 1.598130 GAGACCTTGTGCTTGCCGT 60.598 57.895 0.00 0.00 0.00 5.68
3773 3885 1.569479 GAGACCTTGTGCTTGCCGTC 61.569 60.000 0.00 0.00 0.00 4.79
3774 3886 1.891919 GACCTTGTGCTTGCCGTCA 60.892 57.895 0.00 0.00 0.00 4.35
3775 3887 2.117941 GACCTTGTGCTTGCCGTCAC 62.118 60.000 0.00 0.00 0.00 3.67
3776 3888 2.639286 CTTGTGCTTGCCGTCACC 59.361 61.111 0.00 0.00 32.51 4.02
3777 3889 2.124529 TTGTGCTTGCCGTCACCA 60.125 55.556 0.00 0.00 32.51 4.17
3778 3890 2.121564 CTTGTGCTTGCCGTCACCAG 62.122 60.000 0.00 0.00 32.51 4.00
3779 3891 2.591715 GTGCTTGCCGTCACCAGT 60.592 61.111 0.00 0.00 0.00 4.00
3780 3892 2.591429 TGCTTGCCGTCACCAGTG 60.591 61.111 0.00 0.00 0.00 3.66
3781 3893 2.591715 GCTTGCCGTCACCAGTGT 60.592 61.111 0.00 0.00 0.00 3.55
3782 3894 2.896801 GCTTGCCGTCACCAGTGTG 61.897 63.158 0.00 0.00 44.18 3.82
3796 3908 2.789213 CAGTGTGAGAGTGGAGAGAGA 58.211 52.381 0.00 0.00 0.00 3.10
3797 3909 2.749076 CAGTGTGAGAGTGGAGAGAGAG 59.251 54.545 0.00 0.00 0.00 3.20
3798 3910 2.642311 AGTGTGAGAGTGGAGAGAGAGA 59.358 50.000 0.00 0.00 0.00 3.10
3799 3911 3.073798 AGTGTGAGAGTGGAGAGAGAGAA 59.926 47.826 0.00 0.00 0.00 2.87
3800 3912 3.440173 GTGTGAGAGTGGAGAGAGAGAAG 59.560 52.174 0.00 0.00 0.00 2.85
3801 3913 3.329225 TGTGAGAGTGGAGAGAGAGAAGA 59.671 47.826 0.00 0.00 0.00 2.87
3802 3914 3.941483 GTGAGAGTGGAGAGAGAGAAGAG 59.059 52.174 0.00 0.00 0.00 2.85
3803 3915 3.843619 TGAGAGTGGAGAGAGAGAAGAGA 59.156 47.826 0.00 0.00 0.00 3.10
3804 3916 4.080919 TGAGAGTGGAGAGAGAGAAGAGAG 60.081 50.000 0.00 0.00 0.00 3.20
3805 3917 3.846588 AGAGTGGAGAGAGAGAAGAGAGT 59.153 47.826 0.00 0.00 0.00 3.24
3806 3918 3.941483 GAGTGGAGAGAGAGAAGAGAGTG 59.059 52.174 0.00 0.00 0.00 3.51
3807 3919 3.587061 AGTGGAGAGAGAGAAGAGAGTGA 59.413 47.826 0.00 0.00 0.00 3.41
3808 3920 3.941483 GTGGAGAGAGAGAAGAGAGTGAG 59.059 52.174 0.00 0.00 0.00 3.51
3809 3921 2.945668 GGAGAGAGAGAAGAGAGTGAGC 59.054 54.545 0.00 0.00 0.00 4.26
3810 3922 3.609853 GAGAGAGAGAAGAGAGTGAGCA 58.390 50.000 0.00 0.00 0.00 4.26
3811 3923 4.009675 GAGAGAGAGAAGAGAGTGAGCAA 58.990 47.826 0.00 0.00 0.00 3.91
3812 3924 4.603131 AGAGAGAGAAGAGAGTGAGCAAT 58.397 43.478 0.00 0.00 0.00 3.56
3813 3925 4.400251 AGAGAGAGAAGAGAGTGAGCAATG 59.600 45.833 0.00 0.00 0.00 2.82
3814 3926 4.343231 AGAGAGAAGAGAGTGAGCAATGA 58.657 43.478 0.00 0.00 0.00 2.57
3815 3927 4.400251 AGAGAGAAGAGAGTGAGCAATGAG 59.600 45.833 0.00 0.00 0.00 2.90
3816 3928 4.343231 AGAGAAGAGAGTGAGCAATGAGA 58.657 43.478 0.00 0.00 0.00 3.27
3817 3929 4.400251 AGAGAAGAGAGTGAGCAATGAGAG 59.600 45.833 0.00 0.00 0.00 3.20
3818 3930 4.343231 AGAAGAGAGTGAGCAATGAGAGA 58.657 43.478 0.00 0.00 0.00 3.10
3819 3931 4.771577 AGAAGAGAGTGAGCAATGAGAGAA 59.228 41.667 0.00 0.00 0.00 2.87
3820 3932 5.245751 AGAAGAGAGTGAGCAATGAGAGAAA 59.754 40.000 0.00 0.00 0.00 2.52
3821 3933 5.075858 AGAGAGTGAGCAATGAGAGAAAG 57.924 43.478 0.00 0.00 0.00 2.62
3822 3934 4.081531 AGAGAGTGAGCAATGAGAGAAAGG 60.082 45.833 0.00 0.00 0.00 3.11
3823 3935 3.582208 AGAGTGAGCAATGAGAGAAAGGT 59.418 43.478 0.00 0.00 0.00 3.50
3824 3936 3.672808 AGTGAGCAATGAGAGAAAGGTG 58.327 45.455 0.00 0.00 0.00 4.00
3825 3937 3.326006 AGTGAGCAATGAGAGAAAGGTGA 59.674 43.478 0.00 0.00 0.00 4.02
3826 3938 3.683822 GTGAGCAATGAGAGAAAGGTGAG 59.316 47.826 0.00 0.00 0.00 3.51
3827 3939 3.269178 GAGCAATGAGAGAAAGGTGAGG 58.731 50.000 0.00 0.00 0.00 3.86
3828 3940 2.026449 AGCAATGAGAGAAAGGTGAGGG 60.026 50.000 0.00 0.00 0.00 4.30
3829 3941 2.943199 GCAATGAGAGAAAGGTGAGGGG 60.943 54.545 0.00 0.00 0.00 4.79
3830 3942 2.573462 CAATGAGAGAAAGGTGAGGGGA 59.427 50.000 0.00 0.00 0.00 4.81
3831 3943 1.944177 TGAGAGAAAGGTGAGGGGAG 58.056 55.000 0.00 0.00 0.00 4.30
3832 3944 1.150135 TGAGAGAAAGGTGAGGGGAGT 59.850 52.381 0.00 0.00 0.00 3.85
3833 3945 2.261729 GAGAGAAAGGTGAGGGGAGTT 58.738 52.381 0.00 0.00 0.00 3.01
3834 3946 3.181410 TGAGAGAAAGGTGAGGGGAGTTA 60.181 47.826 0.00 0.00 0.00 2.24
3835 3947 4.034410 GAGAGAAAGGTGAGGGGAGTTAT 58.966 47.826 0.00 0.00 0.00 1.89
3836 3948 3.777522 AGAGAAAGGTGAGGGGAGTTATG 59.222 47.826 0.00 0.00 0.00 1.90
3837 3949 2.846827 AGAAAGGTGAGGGGAGTTATGG 59.153 50.000 0.00 0.00 0.00 2.74
3838 3950 0.919710 AAGGTGAGGGGAGTTATGGC 59.080 55.000 0.00 0.00 0.00 4.40
3839 3951 1.146263 GGTGAGGGGAGTTATGGCG 59.854 63.158 0.00 0.00 0.00 5.69
3840 3952 1.146263 GTGAGGGGAGTTATGGCGG 59.854 63.158 0.00 0.00 0.00 6.13
3841 3953 2.111251 GAGGGGAGTTATGGCGGC 59.889 66.667 0.00 0.00 0.00 6.53
3842 3954 3.809374 GAGGGGAGTTATGGCGGCG 62.809 68.421 0.51 0.51 0.00 6.46
3844 3956 4.547367 GGGAGTTATGGCGGCGCT 62.547 66.667 32.30 15.90 0.00 5.92
3845 3957 2.513897 GGAGTTATGGCGGCGCTT 60.514 61.111 32.30 21.23 0.00 4.68
3846 3958 1.227438 GGAGTTATGGCGGCGCTTA 60.227 57.895 32.30 21.12 0.00 3.09
3847 3959 0.812412 GGAGTTATGGCGGCGCTTAA 60.812 55.000 32.30 24.40 0.00 1.85
3848 3960 0.582005 GAGTTATGGCGGCGCTTAAG 59.418 55.000 32.30 0.00 0.00 1.85
3849 3961 0.814010 AGTTATGGCGGCGCTTAAGG 60.814 55.000 32.30 0.00 0.00 2.69
3850 3962 0.812412 GTTATGGCGGCGCTTAAGGA 60.812 55.000 32.30 10.32 0.00 3.36
3851 3963 0.107606 TTATGGCGGCGCTTAAGGAA 60.108 50.000 32.30 14.06 0.00 3.36
3852 3964 0.107606 TATGGCGGCGCTTAAGGAAA 60.108 50.000 32.30 7.60 0.00 3.13
3853 3965 1.654023 ATGGCGGCGCTTAAGGAAAC 61.654 55.000 32.30 11.99 0.00 2.78
3854 3966 2.329614 GGCGGCGCTTAAGGAAACA 61.330 57.895 32.30 0.00 0.00 2.83
3855 3967 1.577421 GCGGCGCTTAAGGAAACAA 59.423 52.632 26.86 0.00 0.00 2.83
3856 3968 0.728129 GCGGCGCTTAAGGAAACAAC 60.728 55.000 26.86 0.00 0.00 3.32
3857 3969 0.452122 CGGCGCTTAAGGAAACAACG 60.452 55.000 7.64 0.00 0.00 4.10
3858 3970 0.728129 GGCGCTTAAGGAAACAACGC 60.728 55.000 7.64 11.42 43.80 4.84
3859 3971 1.058057 GCGCTTAAGGAAACAACGCG 61.058 55.000 3.53 3.53 41.74 6.01
3860 3972 0.509499 CGCTTAAGGAAACAACGCGA 59.491 50.000 15.93 0.00 41.39 5.87
3861 3973 1.720547 CGCTTAAGGAAACAACGCGAC 60.721 52.381 15.93 0.00 41.39 5.19
3862 3974 1.720547 GCTTAAGGAAACAACGCGACG 60.721 52.381 15.93 5.37 0.00 5.12
3863 3975 0.860533 TTAAGGAAACAACGCGACGG 59.139 50.000 15.93 3.63 0.00 4.79
3864 3976 0.249405 TAAGGAAACAACGCGACGGT 60.249 50.000 15.93 4.40 0.00 4.83
3888 4000 4.767255 CCCCTCACGTGCAGCCTC 62.767 72.222 11.67 0.00 0.00 4.70
3889 4001 4.767255 CCCTCACGTGCAGCCTCC 62.767 72.222 11.67 0.00 0.00 4.30
3891 4003 4.056125 CTCACGTGCAGCCTCCGA 62.056 66.667 11.67 0.00 0.00 4.55
3892 4004 3.362399 CTCACGTGCAGCCTCCGAT 62.362 63.158 11.67 0.00 0.00 4.18
3893 4005 3.190849 CACGTGCAGCCTCCGATG 61.191 66.667 0.82 0.00 0.00 3.84
3894 4006 3.695606 ACGTGCAGCCTCCGATGT 61.696 61.111 0.24 0.00 0.00 3.06
3895 4007 3.190849 CGTGCAGCCTCCGATGTG 61.191 66.667 0.00 0.00 0.00 3.21
3896 4008 3.503363 GTGCAGCCTCCGATGTGC 61.503 66.667 0.00 0.00 36.42 4.57
3897 4009 4.019312 TGCAGCCTCCGATGTGCA 62.019 61.111 0.00 0.00 43.50 4.57
3898 4010 3.503363 GCAGCCTCCGATGTGCAC 61.503 66.667 10.75 10.75 35.91 4.57
3899 4011 2.046988 CAGCCTCCGATGTGCACA 60.047 61.111 24.08 24.08 0.00 4.57
3900 4012 1.450848 CAGCCTCCGATGTGCACAT 60.451 57.895 31.82 31.82 39.70 3.21
3901 4013 1.450848 AGCCTCCGATGTGCACATG 60.451 57.895 35.92 25.02 36.57 3.21
3902 4014 3.104766 CCTCCGATGTGCACATGC 58.895 61.111 35.92 23.85 36.57 4.06
3903 4015 1.450848 CCTCCGATGTGCACATGCT 60.451 57.895 35.92 14.74 42.66 3.79
3904 4016 1.028330 CCTCCGATGTGCACATGCTT 61.028 55.000 35.92 14.32 42.66 3.91
3905 4017 0.376152 CTCCGATGTGCACATGCTTC 59.624 55.000 35.92 21.23 42.66 3.86
3906 4018 0.321475 TCCGATGTGCACATGCTTCA 60.321 50.000 35.92 12.59 42.66 3.02
3907 4019 0.522626 CCGATGTGCACATGCTTCAA 59.477 50.000 35.92 4.10 42.66 2.69
3908 4020 1.466866 CCGATGTGCACATGCTTCAAG 60.467 52.381 35.92 16.48 42.66 3.02
3909 4021 1.198408 CGATGTGCACATGCTTCAAGT 59.802 47.619 35.92 10.54 42.66 3.16
3910 4022 2.351060 CGATGTGCACATGCTTCAAGTT 60.351 45.455 35.92 9.71 42.66 2.66
3911 4023 2.780065 TGTGCACATGCTTCAAGTTC 57.220 45.000 17.42 0.00 42.66 3.01
3912 4024 1.337703 TGTGCACATGCTTCAAGTTCC 59.662 47.619 17.42 0.00 42.66 3.62
3913 4025 1.337703 GTGCACATGCTTCAAGTTCCA 59.662 47.619 13.17 0.00 42.66 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.203771 GGCATCGGGTCGGAGATCT 61.204 63.158 0.00 0.00 40.67 2.75
216 217 4.473520 CCCGCCACCTGCTCGATT 62.474 66.667 0.00 0.00 38.05 3.34
252 253 3.953775 CGCCCACCACCTTCCTGT 61.954 66.667 0.00 0.00 0.00 4.00
643 654 0.400213 TCCACGCCACCTTGATTTCT 59.600 50.000 0.00 0.00 0.00 2.52
644 655 0.804989 CTCCACGCCACCTTGATTTC 59.195 55.000 0.00 0.00 0.00 2.17
682 693 1.918800 CACCTCCTTCCGGTCCCTT 60.919 63.158 0.00 0.00 30.82 3.95
689 700 1.961180 ATTCGCCTCACCTCCTTCCG 61.961 60.000 0.00 0.00 0.00 4.30
712 723 6.713731 ACCTCTATTTTTAAGGGGAGTTGA 57.286 37.500 0.00 0.00 36.64 3.18
719 730 9.681062 TCAATAGTGAACCTCTATTTTTAAGGG 57.319 33.333 0.00 0.00 36.39 3.95
734 745 7.492352 AAATATTACGGCCTCAATAGTGAAC 57.508 36.000 0.00 0.00 31.88 3.18
773 784 0.387565 GGAAAGCAGGACGCCAAAAA 59.612 50.000 0.00 0.00 44.04 1.94
774 785 0.753479 TGGAAAGCAGGACGCCAAAA 60.753 50.000 0.00 0.00 44.04 2.44
775 786 0.753479 TTGGAAAGCAGGACGCCAAA 60.753 50.000 0.00 0.00 44.04 3.28
776 787 0.753479 TTTGGAAAGCAGGACGCCAA 60.753 50.000 0.00 0.00 44.04 4.52
778 789 1.285950 GTTTGGAAAGCAGGACGCC 59.714 57.895 0.00 0.00 44.04 5.68
779 790 2.029743 TGTTTGGAAAGCAGGACGC 58.970 52.632 0.00 0.00 42.91 5.19
785 796 1.682854 CCTTCAGCTGTTTGGAAAGCA 59.317 47.619 14.67 0.00 42.06 3.91
786 797 1.683385 ACCTTCAGCTGTTTGGAAAGC 59.317 47.619 22.19 0.00 39.82 3.51
787 798 3.057946 GCTACCTTCAGCTGTTTGGAAAG 60.058 47.826 22.19 18.78 38.57 2.62
895 906 2.618709 GCAAGGGGACGATTAATTGGAG 59.381 50.000 7.61 0.00 0.00 3.86
909 920 0.040204 AGGGATGAACTTGCAAGGGG 59.960 55.000 29.18 7.03 0.00 4.79
915 926 5.643379 TGTTTATTGAGGGATGAACTTGC 57.357 39.130 0.00 0.00 0.00 4.01
1003 1015 0.679960 GGATTACAGTTGCGCCCCTT 60.680 55.000 4.18 0.00 0.00 3.95
1320 1341 1.988293 TGAAATTTCCCTTGCCGTCA 58.012 45.000 15.48 0.00 0.00 4.35
1432 1454 3.709141 TCAACATCTATTGGGATCGACCA 59.291 43.478 6.41 0.00 41.20 4.02
1472 1494 5.969423 TCCCTTTGCAATCTGATCAAAATC 58.031 37.500 0.00 0.00 30.47 2.17
1681 1703 6.588756 GTGATTAGTTGACCTTGAATACGACA 59.411 38.462 0.00 0.00 0.00 4.35
1696 1718 6.423182 TCCCCTAAAAGATGGTGATTAGTTG 58.577 40.000 0.00 0.00 0.00 3.16
1727 1749 4.321527 CGCAGTTGCATAGATAGGATCAGA 60.322 45.833 4.84 0.00 42.21 3.27
1746 1768 3.374745 AGCAACTCAATTTTGTTCGCAG 58.625 40.909 12.50 0.00 0.00 5.18
1767 1789 3.157881 TGTTTGCATACATTCCCCGAAA 58.842 40.909 5.83 0.00 0.00 3.46
1843 1866 1.698506 TTTTCCATGGTCCGCAACTT 58.301 45.000 12.58 0.00 0.00 2.66
1875 1906 3.480470 GCCTAAATGCTTGGCTCAGATA 58.520 45.455 0.00 0.00 43.05 1.98
1877 1908 1.683011 GGCCTAAATGCTTGGCTCAGA 60.683 52.381 0.00 0.00 45.45 3.27
1885 1916 7.012607 AGAATATTGTATGGGCCTAAATGCTT 58.987 34.615 4.53 0.00 0.00 3.91
1907 1938 2.161012 CGCGCGTATCTCCCTATAAGAA 59.839 50.000 24.19 0.00 0.00 2.52
1923 1954 0.522705 TCTTAGAAGCTGTACGCGCG 60.523 55.000 30.96 30.96 45.59 6.86
1924 1955 1.192793 CTCTTAGAAGCTGTACGCGC 58.807 55.000 5.73 0.00 45.59 6.86
1926 1957 1.562017 GGCTCTTAGAAGCTGTACGC 58.438 55.000 0.00 2.08 42.13 4.42
1930 1961 2.191400 TCATGGGCTCTTAGAAGCTGT 58.809 47.619 0.00 0.00 42.13 4.40
1945 1976 6.016360 TCCAAATATAGCGACCAAATTCATGG 60.016 38.462 0.00 0.00 46.38 3.66
1952 1983 6.767524 AATGTTCCAAATATAGCGACCAAA 57.232 33.333 0.00 0.00 0.00 3.28
2288 2327 8.151596 TGTGAATGTAGTGTAGATGTTTGGTTA 58.848 33.333 0.00 0.00 0.00 2.85
2357 2396 1.632046 CGCGTGGGTGTCACCATAAC 61.632 60.000 23.48 16.03 43.59 1.89
2650 2689 2.372690 CGAGAGGAAACACGTGCGG 61.373 63.158 17.22 0.00 0.00 5.69
2651 2690 3.000080 GCGAGAGGAAACACGTGCG 62.000 63.158 17.22 9.53 0.00 5.34
2690 2730 2.988493 GTCGGTTAACTTGTGCGATGTA 59.012 45.455 5.42 0.00 0.00 2.29
2715 2757 2.203252 CCATCATCACCAGCCGGG 60.203 66.667 2.18 0.00 44.81 5.73
2937 2979 3.610911 AGTTACTGACAAATGGGCTAGC 58.389 45.455 6.04 6.04 0.00 3.42
2938 2980 3.865745 CGAGTTACTGACAAATGGGCTAG 59.134 47.826 0.00 0.00 0.00 3.42
2943 2985 5.291128 GGATACACGAGTTACTGACAAATGG 59.709 44.000 0.00 0.00 0.00 3.16
2967 3009 4.377841 GCTCAAAAACAAGTGGAGATCTCG 60.378 45.833 16.46 4.91 0.00 4.04
2972 3014 5.065988 GTGTAAGCTCAAAAACAAGTGGAGA 59.934 40.000 0.00 0.00 0.00 3.71
2990 3032 1.517276 CTTTCGCTATCGCCGTGTAAG 59.483 52.381 0.00 0.00 35.26 2.34
3103 3167 7.961325 TTTCTGTCCAAATGCCTTAAAAATC 57.039 32.000 0.00 0.00 0.00 2.17
3105 3169 7.494298 GTCTTTTCTGTCCAAATGCCTTAAAAA 59.506 33.333 0.00 0.00 0.00 1.94
3113 3177 3.005155 AGCTGTCTTTTCTGTCCAAATGC 59.995 43.478 0.00 0.00 0.00 3.56
3114 3178 4.320788 GGAGCTGTCTTTTCTGTCCAAATG 60.321 45.833 0.00 0.00 0.00 2.32
3123 3187 0.321122 CCGCTGGAGCTGTCTTTTCT 60.321 55.000 0.00 0.00 39.32 2.52
3124 3188 0.603975 ACCGCTGGAGCTGTCTTTTC 60.604 55.000 0.00 0.00 33.11 2.29
3129 3194 0.175760 TATCAACCGCTGGAGCTGTC 59.824 55.000 0.00 0.00 37.51 3.51
3143 3208 5.302357 TGCATATTTGTTGCACGTATCAA 57.698 34.783 0.00 0.00 44.73 2.57
3173 3278 0.543277 CAGTCTATTCAGCAGCCCCA 59.457 55.000 0.00 0.00 0.00 4.96
3174 3279 0.833287 TCAGTCTATTCAGCAGCCCC 59.167 55.000 0.00 0.00 0.00 5.80
3191 3299 1.286570 CAGTTTGCGCATGGCTTCA 59.713 52.632 12.75 0.00 44.05 3.02
3203 3311 4.086126 CGAAAATTTCAGCGTGACAGTTTG 60.086 41.667 6.53 0.00 26.62 2.93
3250 3362 1.369091 ATCCCGTCGACAGCAATTGC 61.369 55.000 23.05 23.05 42.49 3.56
3254 3366 1.511305 GAGATCCCGTCGACAGCAA 59.489 57.895 17.16 0.00 0.00 3.91
3260 3372 2.893895 CGGTCGAGATCCCGTCGA 60.894 66.667 8.72 5.55 43.97 4.20
3261 3373 4.609247 GCGGTCGAGATCCCGTCG 62.609 72.222 13.01 9.57 45.91 5.12
3280 3392 2.969238 CATCGGACTCATGGCGGC 60.969 66.667 0.00 0.00 0.00 6.53
3281 3393 1.884464 CACATCGGACTCATGGCGG 60.884 63.158 0.00 0.00 0.00 6.13
3282 3394 2.528743 GCACATCGGACTCATGGCG 61.529 63.158 0.00 0.00 0.00 5.69
3283 3395 1.450134 TGCACATCGGACTCATGGC 60.450 57.895 0.00 0.00 0.00 4.40
3285 3397 0.723414 GTGTGCACATCGGACTCATG 59.277 55.000 24.69 0.00 36.78 3.07
3286 3398 0.391661 GGTGTGCACATCGGACTCAT 60.392 55.000 24.69 0.00 36.78 2.90
3287 3399 1.005037 GGTGTGCACATCGGACTCA 60.005 57.895 24.69 0.00 36.78 3.41
3288 3400 1.016130 CAGGTGTGCACATCGGACTC 61.016 60.000 23.83 8.56 36.78 3.36
3289 3401 1.004560 CAGGTGTGCACATCGGACT 60.005 57.895 23.83 13.50 36.78 3.85
3290 3402 1.291877 GACAGGTGTGCACATCGGAC 61.292 60.000 32.62 24.05 36.27 4.79
3291 3403 1.005037 GACAGGTGTGCACATCGGA 60.005 57.895 32.62 3.20 30.81 4.55
3293 3405 0.319813 TGAGACAGGTGTGCACATCG 60.320 55.000 24.69 19.94 30.81 3.84
3294 3406 1.436600 CTGAGACAGGTGTGCACATC 58.563 55.000 24.69 23.74 0.00 3.06
3295 3407 0.604780 GCTGAGACAGGTGTGCACAT 60.605 55.000 24.69 6.59 31.21 3.21
3296 3408 1.227645 GCTGAGACAGGTGTGCACA 60.228 57.895 17.42 17.42 31.21 4.57
3297 3409 1.963338 GGCTGAGACAGGTGTGCAC 60.963 63.158 10.75 10.75 31.21 4.57
3298 3410 1.981951 TTGGCTGAGACAGGTGTGCA 61.982 55.000 0.00 0.00 31.21 4.57
3299 3411 1.227943 TTGGCTGAGACAGGTGTGC 60.228 57.895 0.00 0.00 31.21 4.57
3300 3412 0.179048 TGTTGGCTGAGACAGGTGTG 60.179 55.000 0.00 0.00 31.21 3.82
3301 3413 0.107456 CTGTTGGCTGAGACAGGTGT 59.893 55.000 0.00 0.00 39.60 4.16
3302 3414 0.394192 TCTGTTGGCTGAGACAGGTG 59.606 55.000 0.00 0.00 42.67 4.00
3306 3418 0.325933 CCCATCTGTTGGCTGAGACA 59.674 55.000 0.00 0.00 44.97 3.41
3333 3445 2.740714 GCCGTAAGCTGCTGTTCCG 61.741 63.158 1.35 3.25 38.99 4.30
3341 3453 1.647346 TTTATCACCGCCGTAAGCTG 58.353 50.000 0.00 0.00 40.39 4.24
3354 3466 8.912988 AGCCATATTTTCCGAAGAATTTTATCA 58.087 29.630 0.00 0.00 0.00 2.15
3368 3480 3.005791 CGAAATCCCCAGCCATATTTTCC 59.994 47.826 0.00 0.00 0.00 3.13
3380 3492 6.099994 TCCCTATAGATATCGAAATCCCCA 57.900 41.667 0.00 0.00 0.00 4.96
3381 3493 7.619512 ATTCCCTATAGATATCGAAATCCCC 57.380 40.000 0.00 0.00 0.00 4.81
3389 3501 6.015350 ACCGCCATAATTCCCTATAGATATCG 60.015 42.308 0.00 0.00 0.00 2.92
3393 3505 4.164221 CCACCGCCATAATTCCCTATAGAT 59.836 45.833 0.00 0.00 0.00 1.98
3395 3507 3.517901 TCCACCGCCATAATTCCCTATAG 59.482 47.826 0.00 0.00 0.00 1.31
3401 3513 2.554032 CTGATTCCACCGCCATAATTCC 59.446 50.000 0.00 0.00 0.00 3.01
3431 3543 0.893727 CTTGTGGGGCCACTTACACC 60.894 60.000 6.53 0.00 46.30 4.16
3442 3554 4.684134 CCACCTGGCCTTGTGGGG 62.684 72.222 27.34 15.49 46.67 4.96
3524 3636 0.680061 AGAAAGACGGGAAGCTTCGT 59.320 50.000 19.91 16.12 42.67 3.85
3534 3646 3.691049 TTTGAGCAACAAGAAAGACGG 57.309 42.857 0.00 0.00 39.77 4.79
3553 3665 8.949177 ACCACTTACCGATTTAATACGATTTTT 58.051 29.630 0.00 0.00 0.00 1.94
3554 3666 8.496707 ACCACTTACCGATTTAATACGATTTT 57.503 30.769 0.00 0.00 0.00 1.82
3555 3667 8.496707 AACCACTTACCGATTTAATACGATTT 57.503 30.769 0.00 0.00 0.00 2.17
3556 3668 8.392612 CAAACCACTTACCGATTTAATACGATT 58.607 33.333 0.00 0.00 0.00 3.34
3557 3669 7.765360 TCAAACCACTTACCGATTTAATACGAT 59.235 33.333 0.00 0.00 0.00 3.73
3558 3670 7.063308 GTCAAACCACTTACCGATTTAATACGA 59.937 37.037 0.00 0.00 0.00 3.43
3559 3671 7.175410 GTCAAACCACTTACCGATTTAATACG 58.825 38.462 0.00 0.00 0.00 3.06
3560 3672 7.335171 AGGTCAAACCACTTACCGATTTAATAC 59.665 37.037 0.00 0.00 41.95 1.89
3561 3673 7.396418 AGGTCAAACCACTTACCGATTTAATA 58.604 34.615 0.00 0.00 41.95 0.98
3562 3674 6.243148 AGGTCAAACCACTTACCGATTTAAT 58.757 36.000 0.00 0.00 41.95 1.40
3563 3675 5.623169 AGGTCAAACCACTTACCGATTTAA 58.377 37.500 0.00 0.00 41.95 1.52
3564 3676 5.231702 AGGTCAAACCACTTACCGATTTA 57.768 39.130 0.00 0.00 41.95 1.40
3565 3677 4.070009 GAGGTCAAACCACTTACCGATTT 58.930 43.478 0.00 0.00 41.95 2.17
3566 3678 3.558533 GGAGGTCAAACCACTTACCGATT 60.559 47.826 0.00 0.00 41.95 3.34
3567 3679 2.027469 GGAGGTCAAACCACTTACCGAT 60.027 50.000 0.00 0.00 41.95 4.18
3568 3680 1.345415 GGAGGTCAAACCACTTACCGA 59.655 52.381 0.00 0.00 41.95 4.69
3569 3681 1.071071 TGGAGGTCAAACCACTTACCG 59.929 52.381 0.00 0.00 41.95 4.02
3570 3682 2.943036 TGGAGGTCAAACCACTTACC 57.057 50.000 0.00 0.00 41.95 2.85
3573 3685 8.723365 TCAATATATATGGAGGTCAAACCACTT 58.277 33.333 0.00 0.00 41.95 3.16
3574 3686 8.275187 TCAATATATATGGAGGTCAAACCACT 57.725 34.615 0.00 0.00 41.95 4.00
3575 3687 9.520515 AATCAATATATATGGAGGTCAAACCAC 57.479 33.333 6.01 0.00 41.95 4.16
3616 3728 9.391006 TGTCTGAGTTATTGTTTTCTACTTGTT 57.609 29.630 0.00 0.00 0.00 2.83
3617 3729 8.958119 TGTCTGAGTTATTGTTTTCTACTTGT 57.042 30.769 0.00 0.00 0.00 3.16
3618 3730 9.046296 ACTGTCTGAGTTATTGTTTTCTACTTG 57.954 33.333 0.00 0.00 0.00 3.16
3619 3731 9.046296 CACTGTCTGAGTTATTGTTTTCTACTT 57.954 33.333 0.00 0.00 29.75 2.24
3620 3732 7.171678 GCACTGTCTGAGTTATTGTTTTCTACT 59.828 37.037 0.00 0.00 29.75 2.57
3621 3733 7.042051 TGCACTGTCTGAGTTATTGTTTTCTAC 60.042 37.037 0.00 0.00 29.75 2.59
3622 3734 6.989759 TGCACTGTCTGAGTTATTGTTTTCTA 59.010 34.615 0.00 0.00 29.75 2.10
3623 3735 5.822519 TGCACTGTCTGAGTTATTGTTTTCT 59.177 36.000 0.00 0.00 29.75 2.52
3624 3736 5.909610 GTGCACTGTCTGAGTTATTGTTTTC 59.090 40.000 10.32 0.00 29.75 2.29
3625 3737 5.590259 AGTGCACTGTCTGAGTTATTGTTTT 59.410 36.000 20.97 0.00 29.75 2.43
3626 3738 5.126067 AGTGCACTGTCTGAGTTATTGTTT 58.874 37.500 20.97 0.00 29.75 2.83
3627 3739 4.708177 AGTGCACTGTCTGAGTTATTGTT 58.292 39.130 20.97 0.00 29.75 2.83
3628 3740 4.342862 AGTGCACTGTCTGAGTTATTGT 57.657 40.909 20.97 0.00 29.75 2.71
3629 3741 6.785488 TTTAGTGCACTGTCTGAGTTATTG 57.215 37.500 29.57 0.00 29.75 1.90
3630 3742 7.986085 AATTTAGTGCACTGTCTGAGTTATT 57.014 32.000 29.57 11.23 29.75 1.40
3631 3743 9.672673 ATTAATTTAGTGCACTGTCTGAGTTAT 57.327 29.630 29.57 8.62 29.75 1.89
3633 3745 7.986085 ATTAATTTAGTGCACTGTCTGAGTT 57.014 32.000 29.57 15.01 29.75 3.01
3634 3746 7.766278 CCTATTAATTTAGTGCACTGTCTGAGT 59.234 37.037 29.57 12.57 34.02 3.41
3635 3747 7.766278 ACCTATTAATTTAGTGCACTGTCTGAG 59.234 37.037 29.57 14.43 0.00 3.35
3636 3748 7.620880 ACCTATTAATTTAGTGCACTGTCTGA 58.379 34.615 29.57 5.81 0.00 3.27
3637 3749 7.849804 ACCTATTAATTTAGTGCACTGTCTG 57.150 36.000 29.57 9.00 0.00 3.51
3638 3750 9.601217 CTAACCTATTAATTTAGTGCACTGTCT 57.399 33.333 29.57 12.96 0.00 3.41
3639 3751 9.379791 ACTAACCTATTAATTTAGTGCACTGTC 57.620 33.333 29.57 0.00 35.26 3.51
3708 3820 9.761504 TCTCAAAATTTTGATTGTTTCATGCTA 57.238 25.926 28.86 6.55 45.26 3.49
3709 3821 8.665643 TCTCAAAATTTTGATTGTTTCATGCT 57.334 26.923 28.86 0.00 45.26 3.79
3710 3822 9.325150 CATCTCAAAATTTTGATTGTTTCATGC 57.675 29.630 28.86 0.00 45.26 4.06
3726 3838 9.896645 ACAATGAGTAGTGATACATCTCAAAAT 57.103 29.630 0.00 0.00 35.24 1.82
3727 3839 9.725019 AACAATGAGTAGTGATACATCTCAAAA 57.275 29.630 0.00 0.00 35.24 2.44
3728 3840 9.154847 CAACAATGAGTAGTGATACATCTCAAA 57.845 33.333 0.00 0.00 35.24 2.69
3729 3841 8.531146 TCAACAATGAGTAGTGATACATCTCAA 58.469 33.333 0.00 0.00 35.24 3.02
3730 3842 8.066612 TCAACAATGAGTAGTGATACATCTCA 57.933 34.615 0.00 0.00 35.72 3.27
3731 3843 8.572828 CTCAACAATGAGTAGTGATACATCTC 57.427 38.462 0.00 0.00 46.60 2.75
3746 3858 3.213206 AGCACAAGGTCTCAACAATGA 57.787 42.857 0.00 0.00 0.00 2.57
3747 3859 3.635331 CAAGCACAAGGTCTCAACAATG 58.365 45.455 0.00 0.00 0.00 2.82
3748 3860 2.035066 GCAAGCACAAGGTCTCAACAAT 59.965 45.455 0.00 0.00 0.00 2.71
3749 3861 1.405105 GCAAGCACAAGGTCTCAACAA 59.595 47.619 0.00 0.00 0.00 2.83
3750 3862 1.024271 GCAAGCACAAGGTCTCAACA 58.976 50.000 0.00 0.00 0.00 3.33
3751 3863 0.312102 GGCAAGCACAAGGTCTCAAC 59.688 55.000 0.00 0.00 0.00 3.18
3752 3864 1.165907 CGGCAAGCACAAGGTCTCAA 61.166 55.000 0.00 0.00 0.00 3.02
3753 3865 1.597854 CGGCAAGCACAAGGTCTCA 60.598 57.895 0.00 0.00 0.00 3.27
3754 3866 1.569479 GACGGCAAGCACAAGGTCTC 61.569 60.000 0.00 0.00 0.00 3.36
3755 3867 1.598130 GACGGCAAGCACAAGGTCT 60.598 57.895 0.00 0.00 0.00 3.85
3756 3868 1.891919 TGACGGCAAGCACAAGGTC 60.892 57.895 0.00 0.00 0.00 3.85
3757 3869 2.186826 GTGACGGCAAGCACAAGGT 61.187 57.895 0.00 0.00 35.19 3.50
3758 3870 2.639286 GTGACGGCAAGCACAAGG 59.361 61.111 0.00 0.00 35.19 3.61
3759 3871 2.121564 CTGGTGACGGCAAGCACAAG 62.122 60.000 0.00 0.00 36.76 3.16
3760 3872 2.124529 TGGTGACGGCAAGCACAA 60.125 55.556 0.00 0.00 36.76 3.33
3761 3873 2.591429 CTGGTGACGGCAAGCACA 60.591 61.111 0.00 0.00 36.76 4.57
3762 3874 2.591715 ACTGGTGACGGCAAGCAC 60.592 61.111 0.00 0.00 41.93 4.40
3763 3875 2.591429 CACTGGTGACGGCAAGCA 60.591 61.111 0.00 0.00 41.93 3.91
3764 3876 2.591715 ACACTGGTGACGGCAAGC 60.592 61.111 7.78 0.00 41.93 4.01
3773 3885 1.271934 CTCTCCACTCTCACACTGGTG 59.728 57.143 0.00 0.00 46.66 4.17
3774 3886 1.145945 TCTCTCCACTCTCACACTGGT 59.854 52.381 0.00 0.00 0.00 4.00
3775 3887 1.818060 CTCTCTCCACTCTCACACTGG 59.182 57.143 0.00 0.00 0.00 4.00
3776 3888 2.749076 CTCTCTCTCCACTCTCACACTG 59.251 54.545 0.00 0.00 0.00 3.66
3777 3889 2.642311 TCTCTCTCTCCACTCTCACACT 59.358 50.000 0.00 0.00 0.00 3.55
3778 3890 3.066291 TCTCTCTCTCCACTCTCACAC 57.934 52.381 0.00 0.00 0.00 3.82
3779 3891 3.329225 TCTTCTCTCTCTCCACTCTCACA 59.671 47.826 0.00 0.00 0.00 3.58
3780 3892 3.941483 CTCTTCTCTCTCTCCACTCTCAC 59.059 52.174 0.00 0.00 0.00 3.51
3781 3893 3.843619 TCTCTTCTCTCTCTCCACTCTCA 59.156 47.826 0.00 0.00 0.00 3.27
3782 3894 4.080863 ACTCTCTTCTCTCTCTCCACTCTC 60.081 50.000 0.00 0.00 0.00 3.20
3783 3895 3.846588 ACTCTCTTCTCTCTCTCCACTCT 59.153 47.826 0.00 0.00 0.00 3.24
3784 3896 3.941483 CACTCTCTTCTCTCTCTCCACTC 59.059 52.174 0.00 0.00 0.00 3.51
3785 3897 3.587061 TCACTCTCTTCTCTCTCTCCACT 59.413 47.826 0.00 0.00 0.00 4.00
3786 3898 3.941483 CTCACTCTCTTCTCTCTCTCCAC 59.059 52.174 0.00 0.00 0.00 4.02
3787 3899 3.622206 GCTCACTCTCTTCTCTCTCTCCA 60.622 52.174 0.00 0.00 0.00 3.86
3788 3900 2.945668 GCTCACTCTCTTCTCTCTCTCC 59.054 54.545 0.00 0.00 0.00 3.71
3789 3901 3.609853 TGCTCACTCTCTTCTCTCTCTC 58.390 50.000 0.00 0.00 0.00 3.20
3790 3902 3.719268 TGCTCACTCTCTTCTCTCTCT 57.281 47.619 0.00 0.00 0.00 3.10
3791 3903 4.398988 TCATTGCTCACTCTCTTCTCTCTC 59.601 45.833 0.00 0.00 0.00 3.20
3792 3904 4.343231 TCATTGCTCACTCTCTTCTCTCT 58.657 43.478 0.00 0.00 0.00 3.10
3793 3905 4.398988 TCTCATTGCTCACTCTCTTCTCTC 59.601 45.833 0.00 0.00 0.00 3.20
3794 3906 4.343231 TCTCATTGCTCACTCTCTTCTCT 58.657 43.478 0.00 0.00 0.00 3.10
3795 3907 4.398988 TCTCTCATTGCTCACTCTCTTCTC 59.601 45.833 0.00 0.00 0.00 2.87
3796 3908 4.343231 TCTCTCATTGCTCACTCTCTTCT 58.657 43.478 0.00 0.00 0.00 2.85
3797 3909 4.717233 TCTCTCATTGCTCACTCTCTTC 57.283 45.455 0.00 0.00 0.00 2.87
3798 3910 5.480642 TTTCTCTCATTGCTCACTCTCTT 57.519 39.130 0.00 0.00 0.00 2.85
3799 3911 4.081531 CCTTTCTCTCATTGCTCACTCTCT 60.082 45.833 0.00 0.00 0.00 3.10
3800 3912 4.183101 CCTTTCTCTCATTGCTCACTCTC 58.817 47.826 0.00 0.00 0.00 3.20
3801 3913 3.582208 ACCTTTCTCTCATTGCTCACTCT 59.418 43.478 0.00 0.00 0.00 3.24
3802 3914 3.683822 CACCTTTCTCTCATTGCTCACTC 59.316 47.826 0.00 0.00 0.00 3.51
3803 3915 3.326006 TCACCTTTCTCTCATTGCTCACT 59.674 43.478 0.00 0.00 0.00 3.41
3804 3916 3.668447 TCACCTTTCTCTCATTGCTCAC 58.332 45.455 0.00 0.00 0.00 3.51
3805 3917 3.307269 CCTCACCTTTCTCTCATTGCTCA 60.307 47.826 0.00 0.00 0.00 4.26
3806 3918 3.269178 CCTCACCTTTCTCTCATTGCTC 58.731 50.000 0.00 0.00 0.00 4.26
3807 3919 2.026449 CCCTCACCTTTCTCTCATTGCT 60.026 50.000 0.00 0.00 0.00 3.91
3808 3920 2.363683 CCCTCACCTTTCTCTCATTGC 58.636 52.381 0.00 0.00 0.00 3.56
3809 3921 2.573462 TCCCCTCACCTTTCTCTCATTG 59.427 50.000 0.00 0.00 0.00 2.82
3810 3922 2.843113 CTCCCCTCACCTTTCTCTCATT 59.157 50.000 0.00 0.00 0.00 2.57
3811 3923 2.225753 ACTCCCCTCACCTTTCTCTCAT 60.226 50.000 0.00 0.00 0.00 2.90
3812 3924 1.150135 ACTCCCCTCACCTTTCTCTCA 59.850 52.381 0.00 0.00 0.00 3.27
3813 3925 1.945580 ACTCCCCTCACCTTTCTCTC 58.054 55.000 0.00 0.00 0.00 3.20
3814 3926 2.424684 AACTCCCCTCACCTTTCTCT 57.575 50.000 0.00 0.00 0.00 3.10
3815 3927 3.118223 CCATAACTCCCCTCACCTTTCTC 60.118 52.174 0.00 0.00 0.00 2.87
3816 3928 2.846827 CCATAACTCCCCTCACCTTTCT 59.153 50.000 0.00 0.00 0.00 2.52
3817 3929 2.684038 GCCATAACTCCCCTCACCTTTC 60.684 54.545 0.00 0.00 0.00 2.62
3818 3930 1.285078 GCCATAACTCCCCTCACCTTT 59.715 52.381 0.00 0.00 0.00 3.11
3819 3931 0.919710 GCCATAACTCCCCTCACCTT 59.080 55.000 0.00 0.00 0.00 3.50
3820 3932 1.338136 CGCCATAACTCCCCTCACCT 61.338 60.000 0.00 0.00 0.00 4.00
3821 3933 1.146263 CGCCATAACTCCCCTCACC 59.854 63.158 0.00 0.00 0.00 4.02
3822 3934 1.146263 CCGCCATAACTCCCCTCAC 59.854 63.158 0.00 0.00 0.00 3.51
3823 3935 2.742116 GCCGCCATAACTCCCCTCA 61.742 63.158 0.00 0.00 0.00 3.86
3824 3936 2.111251 GCCGCCATAACTCCCCTC 59.889 66.667 0.00 0.00 0.00 4.30
3825 3937 3.861797 CGCCGCCATAACTCCCCT 61.862 66.667 0.00 0.00 0.00 4.79
3827 3939 2.653953 TAAGCGCCGCCATAACTCCC 62.654 60.000 4.98 0.00 0.00 4.30
3828 3940 0.812412 TTAAGCGCCGCCATAACTCC 60.812 55.000 4.98 0.00 0.00 3.85
3829 3941 0.582005 CTTAAGCGCCGCCATAACTC 59.418 55.000 4.98 0.00 0.00 3.01
3830 3942 0.814010 CCTTAAGCGCCGCCATAACT 60.814 55.000 4.98 0.00 0.00 2.24
3831 3943 0.812412 TCCTTAAGCGCCGCCATAAC 60.812 55.000 4.98 0.00 0.00 1.89
3832 3944 0.107606 TTCCTTAAGCGCCGCCATAA 60.108 50.000 4.98 5.04 0.00 1.90
3833 3945 0.107606 TTTCCTTAAGCGCCGCCATA 60.108 50.000 4.98 0.00 0.00 2.74
3834 3946 1.377987 TTTCCTTAAGCGCCGCCAT 60.378 52.632 4.98 0.00 0.00 4.40
3835 3947 2.032834 TTTCCTTAAGCGCCGCCA 59.967 55.556 4.98 0.00 0.00 5.69
3836 3948 1.858372 TTGTTTCCTTAAGCGCCGCC 61.858 55.000 4.98 0.00 0.00 6.13
3837 3949 0.728129 GTTGTTTCCTTAAGCGCCGC 60.728 55.000 2.29 0.00 0.00 6.53
3838 3950 0.452122 CGTTGTTTCCTTAAGCGCCG 60.452 55.000 2.29 0.00 0.00 6.46
3839 3951 0.728129 GCGTTGTTTCCTTAAGCGCC 60.728 55.000 2.29 0.00 37.83 6.53
3840 3952 1.058057 CGCGTTGTTTCCTTAAGCGC 61.058 55.000 0.00 0.00 39.68 5.92
3841 3953 0.509499 TCGCGTTGTTTCCTTAAGCG 59.491 50.000 5.77 0.20 46.29 4.68
3842 3954 1.720547 CGTCGCGTTGTTTCCTTAAGC 60.721 52.381 5.77 0.00 0.00 3.09
3843 3955 1.136446 CCGTCGCGTTGTTTCCTTAAG 60.136 52.381 5.77 0.00 0.00 1.85
3844 3956 0.860533 CCGTCGCGTTGTTTCCTTAA 59.139 50.000 5.77 0.00 0.00 1.85
3845 3957 0.249405 ACCGTCGCGTTGTTTCCTTA 60.249 50.000 5.77 0.00 0.00 2.69
3846 3958 1.522130 ACCGTCGCGTTGTTTCCTT 60.522 52.632 5.77 0.00 0.00 3.36
3847 3959 2.107546 ACCGTCGCGTTGTTTCCT 59.892 55.556 5.77 0.00 0.00 3.36
3848 3960 2.247267 CACCGTCGCGTTGTTTCC 59.753 61.111 5.77 0.00 0.00 3.13
3849 3961 1.367195 CACACCGTCGCGTTGTTTC 60.367 57.895 5.77 0.00 0.00 2.78
3850 3962 2.704616 CACACCGTCGCGTTGTTT 59.295 55.556 5.77 0.00 0.00 2.83
3851 3963 3.932313 GCACACCGTCGCGTTGTT 61.932 61.111 5.77 0.00 0.00 2.83
3871 3983 4.767255 GAGGCTGCACGTGAGGGG 62.767 72.222 22.23 6.44 32.68 4.79
3872 3984 4.767255 GGAGGCTGCACGTGAGGG 62.767 72.222 22.23 9.08 37.78 4.30
3874 3986 3.362399 ATCGGAGGCTGCACGTGAG 62.362 63.158 22.23 14.65 0.00 3.51
3875 3987 3.381983 ATCGGAGGCTGCACGTGA 61.382 61.111 22.23 3.45 0.00 4.35
3876 3988 3.190849 CATCGGAGGCTGCACGTG 61.191 66.667 12.28 12.28 0.00 4.49
3877 3989 3.695606 ACATCGGAGGCTGCACGT 61.696 61.111 6.86 0.00 0.00 4.49
3878 3990 3.190849 CACATCGGAGGCTGCACG 61.191 66.667 6.86 2.97 0.00 5.34
3879 3991 3.503363 GCACATCGGAGGCTGCAC 61.503 66.667 6.86 0.00 0.00 4.57
3880 3992 4.019312 TGCACATCGGAGGCTGCA 62.019 61.111 6.86 13.17 37.30 4.41
3881 3993 3.503363 GTGCACATCGGAGGCTGC 61.503 66.667 13.17 0.00 0.00 5.25
3882 3994 1.450848 ATGTGCACATCGGAGGCTG 60.451 57.895 26.61 0.00 28.78 4.85
3883 3995 1.450848 CATGTGCACATCGGAGGCT 60.451 57.895 29.23 4.21 33.61 4.58
3884 3996 3.104766 CATGTGCACATCGGAGGC 58.895 61.111 29.23 0.00 33.61 4.70
3885 3997 1.028330 AAGCATGTGCACATCGGAGG 61.028 55.000 29.23 18.29 45.16 4.30
3886 3998 0.376152 GAAGCATGTGCACATCGGAG 59.624 55.000 29.23 18.66 45.16 4.63
3887 3999 0.321475 TGAAGCATGTGCACATCGGA 60.321 50.000 29.23 9.16 45.16 4.55
3888 4000 0.522626 TTGAAGCATGTGCACATCGG 59.477 50.000 29.23 19.74 45.16 4.18
3889 4001 1.198408 ACTTGAAGCATGTGCACATCG 59.802 47.619 29.23 23.12 45.16 3.84
3890 4002 3.240069 GAACTTGAAGCATGTGCACATC 58.760 45.455 29.23 21.85 45.16 3.06
3891 4003 2.029649 GGAACTTGAAGCATGTGCACAT 60.030 45.455 26.61 26.61 45.16 3.21
3892 4004 1.337703 GGAACTTGAAGCATGTGCACA 59.662 47.619 24.08 24.08 45.16 4.57
3893 4005 1.337703 TGGAACTTGAAGCATGTGCAC 59.662 47.619 10.75 10.75 45.16 4.57
3894 4006 1.689984 TGGAACTTGAAGCATGTGCA 58.310 45.000 7.83 0.00 45.16 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.