Multiple sequence alignment - TraesCS5B01G092500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G092500 chr5B 100.000 2645 0 0 1 2645 121531445 121534089 0.000000e+00 4885.0
1 TraesCS5B01G092500 chr5B 96.721 61 2 0 2050 2110 696347024 696346964 4.660000e-18 102.0
2 TraesCS5B01G092500 chr5D 91.659 2086 112 31 1 2054 112355648 112357703 0.000000e+00 2832.0
3 TraesCS5B01G092500 chr5D 93.413 334 18 3 2108 2441 112359015 112359344 2.370000e-135 492.0
4 TraesCS5B01G092500 chr5A 89.995 2109 100 47 1 2054 115247879 115249931 0.000000e+00 2623.0
5 TraesCS5B01G092500 chr5A 86.740 181 20 4 2106 2286 115251104 115251280 5.770000e-47 198.0
6 TraesCS5B01G092500 chr4B 95.215 209 9 1 2438 2645 449507402 449507610 1.960000e-86 329.0
7 TraesCS5B01G092500 chr4B 93.269 208 13 1 2439 2645 591270925 591270718 3.310000e-79 305.0
8 TraesCS5B01G092500 chr4B 93.204 206 13 1 2436 2640 609358128 609358333 4.280000e-78 302.0
9 TraesCS5B01G092500 chr4B 96.721 61 2 0 2050 2110 72900111 72900051 4.660000e-18 102.0
10 TraesCS5B01G092500 chr4A 93.810 210 10 3 2437 2644 663370966 663371174 1.980000e-81 313.0
11 TraesCS5B01G092500 chr3B 92.273 220 15 2 2428 2645 717046314 717046095 7.110000e-81 311.0
12 TraesCS5B01G092500 chr1B 93.689 206 11 2 2441 2645 572832425 572832629 9.200000e-80 307.0
13 TraesCS5B01G092500 chr1B 93.269 208 11 2 2441 2645 580629006 580629213 1.190000e-78 303.0
14 TraesCS5B01G092500 chr1B 95.312 64 3 0 2047 2110 99529508 99529571 4.660000e-18 102.0
15 TraesCS5B01G092500 chr6B 93.269 208 13 1 2439 2645 519802670 519802877 3.310000e-79 305.0
16 TraesCS5B01G092500 chr2B 93.269 208 13 1 2439 2645 711127993 711128200 3.310000e-79 305.0
17 TraesCS5B01G092500 chr2A 79.141 163 25 5 2106 2267 726009571 726009417 1.300000e-18 104.0
18 TraesCS5B01G092500 chr6A 95.312 64 3 0 2047 2110 5356192 5356255 4.660000e-18 102.0
19 TraesCS5B01G092500 chr6A 95.312 64 3 0 2047 2110 66301708 66301771 4.660000e-18 102.0
20 TraesCS5B01G092500 chr6A 96.721 61 2 0 2050 2110 408339144 408339084 4.660000e-18 102.0
21 TraesCS5B01G092500 chr6A 95.312 64 3 0 2047 2110 550984416 550984353 4.660000e-18 102.0
22 TraesCS5B01G092500 chr3A 96.721 61 2 0 2050 2110 13738362 13738302 4.660000e-18 102.0
23 TraesCS5B01G092500 chr3A 95.312 64 3 0 2047 2110 44724581 44724644 4.660000e-18 102.0
24 TraesCS5B01G092500 chr1D 93.617 47 1 1 7 51 483531316 483531270 4.720000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G092500 chr5B 121531445 121534089 2644 False 4885.0 4885 100.0000 1 2645 1 chr5B.!!$F1 2644
1 TraesCS5B01G092500 chr5D 112355648 112359344 3696 False 1662.0 2832 92.5360 1 2441 2 chr5D.!!$F1 2440
2 TraesCS5B01G092500 chr5A 115247879 115251280 3401 False 1410.5 2623 88.3675 1 2286 2 chr5A.!!$F1 2285

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 987 0.174617 TTGTGCGTGTGAGTGAGTGA 59.825 50.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2571 4154 0.033208 GACAGGATGGGGCAAATGGA 60.033 55.0 0.0 0.0 43.62 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.487433 TCATGATGAAATACTTCGGTGTGT 58.513 37.500 0.00 0.00 33.94 3.72
133 136 7.083858 AGTTCACACCAAAATTTATCACATCG 58.916 34.615 0.00 0.00 0.00 3.84
150 153 3.820467 ACATCGAAGAATTTGCAGGAACA 59.180 39.130 0.00 0.00 43.58 3.18
220 223 9.825972 TGAAACTTCGAAATATGATTTCTGTTC 57.174 29.630 0.00 6.65 0.00 3.18
605 613 5.129320 TCATGCTCTACTTGCTTCTCCATTA 59.871 40.000 0.00 0.00 0.00 1.90
726 737 3.998913 TTACACTTCCTCCATGCATGA 57.001 42.857 28.31 12.81 0.00 3.07
727 738 2.885135 ACACTTCCTCCATGCATGAA 57.115 45.000 28.31 6.91 0.00 2.57
732 761 4.401519 CACTTCCTCCATGCATGAAGAAAT 59.598 41.667 28.31 13.72 38.05 2.17
734 763 6.264744 CACTTCCTCCATGCATGAAGAAATAT 59.735 38.462 28.31 11.72 38.05 1.28
739 768 8.799367 TCCTCCATGCATGAAGAAATATATTTG 58.201 33.333 28.31 5.90 0.00 2.32
778 824 8.147244 AGTAAATAGACAACTCCCAACTACAT 57.853 34.615 0.00 0.00 0.00 2.29
794 840 7.417683 CCCAACTACATTGCCATTTCATATCAA 60.418 37.037 0.00 0.00 36.93 2.57
807 857 9.888878 CCATTTCATATCAAATCAGTCATACAC 57.111 33.333 0.00 0.00 0.00 2.90
819 869 9.896645 AAATCAGTCATACACTATCATTGTTCT 57.103 29.630 0.00 0.00 32.21 3.01
829 879 7.177878 ACACTATCATTGTTCTCCTTTCCATT 58.822 34.615 0.00 0.00 0.00 3.16
874 924 0.462759 GCTTCTTCTCCACCCATCCG 60.463 60.000 0.00 0.00 0.00 4.18
876 926 1.555075 CTTCTTCTCCACCCATCCGAA 59.445 52.381 0.00 0.00 0.00 4.30
877 927 1.651737 TCTTCTCCACCCATCCGAAA 58.348 50.000 0.00 0.00 0.00 3.46
879 929 0.326927 TTCTCCACCCATCCGAAACC 59.673 55.000 0.00 0.00 0.00 3.27
880 930 0.838554 TCTCCACCCATCCGAAACCA 60.839 55.000 0.00 0.00 0.00 3.67
919 969 0.531311 GCAGCAAGCAAGCCAAACTT 60.531 50.000 0.00 0.00 44.79 2.66
929 979 1.029408 AGCCAAACTTGTGCGTGTGA 61.029 50.000 0.00 0.00 32.17 3.58
931 981 0.732571 CCAAACTTGTGCGTGTGAGT 59.267 50.000 0.00 0.00 0.00 3.41
933 983 1.396648 CAAACTTGTGCGTGTGAGTGA 59.603 47.619 0.00 0.00 0.00 3.41
935 985 0.175760 ACTTGTGCGTGTGAGTGAGT 59.824 50.000 0.00 0.00 0.00 3.41
937 987 0.174617 TTGTGCGTGTGAGTGAGTGA 59.825 50.000 0.00 0.00 0.00 3.41
939 989 1.300156 TGCGTGTGAGTGAGTGAGC 60.300 57.895 0.00 0.00 0.00 4.26
941 991 1.282875 CGTGTGAGTGAGTGAGCGA 59.717 57.895 0.00 0.00 0.00 4.93
1026 1076 2.102357 CTCATCCCCGACGACGTG 59.898 66.667 4.58 0.00 37.88 4.49
1104 1154 2.977178 CTGGCTGAGACGGAGCTT 59.023 61.111 0.00 0.00 36.63 3.74
1208 1258 1.530013 CGGGTGGACCACTACTTCGT 61.530 60.000 23.72 0.00 40.22 3.85
1427 1477 3.066190 ATTCGAGGCCACCGACGA 61.066 61.111 18.02 11.34 35.61 4.20
1658 1726 4.592192 CTGATCGGTGGCGGCGAT 62.592 66.667 12.98 0.26 0.00 4.58
1741 1809 3.699067 GCATTAGCATGTCATCAACCAC 58.301 45.455 0.00 0.00 41.58 4.16
1807 1875 4.032900 CGACAACGATGTAATTTCCTCCTG 59.967 45.833 0.00 0.00 40.74 3.86
1876 1946 4.221422 GCTGGCGCTACCCGATCA 62.221 66.667 7.64 0.00 40.02 2.92
1962 2032 1.447314 GCAGGAAGCAGGCAAATGC 60.447 57.895 0.00 0.00 46.88 3.56
1984 2054 1.340991 TGAGTAAATTGGGGGAGCAGC 60.341 52.381 0.00 0.00 0.00 5.25
2063 2543 6.319152 TGTTCCTCTTCAATTTACGGTCAAAA 59.681 34.615 0.00 0.00 0.00 2.44
2075 2555 1.199097 CGGTCAAAATTGAACCTCGGG 59.801 52.381 5.65 0.00 41.83 5.14
2076 2556 2.510613 GGTCAAAATTGAACCTCGGGA 58.489 47.619 0.00 0.00 38.96 5.14
2078 2558 3.057526 GGTCAAAATTGAACCTCGGGAAG 60.058 47.826 0.00 0.00 38.96 3.46
2079 2559 3.568430 GTCAAAATTGAACCTCGGGAAGT 59.432 43.478 0.00 0.00 39.21 3.01
2081 2561 1.534729 AATTGAACCTCGGGAAGTGC 58.465 50.000 0.00 0.00 0.00 4.40
2084 2564 3.952628 GAACCTCGGGAAGTGCGGG 62.953 68.421 0.00 0.00 0.00 6.13
2110 2590 5.833131 GCACTATATTTTGGAATGGAGGGAA 59.167 40.000 0.00 0.00 0.00 3.97
2111 2591 6.323739 GCACTATATTTTGGAATGGAGGGAAA 59.676 38.462 0.00 0.00 0.00 3.13
2112 2592 7.684428 GCACTATATTTTGGAATGGAGGGAAAC 60.684 40.741 0.00 0.00 0.00 2.78
2176 3759 5.766150 TCTAAACAAACCATCAACACCTG 57.234 39.130 0.00 0.00 0.00 4.00
2280 3863 1.188219 ATCCCGACATCGATCCCCTG 61.188 60.000 2.09 0.00 43.02 4.45
2287 3870 0.179045 CATCGATCCCCTGTTGACCC 60.179 60.000 0.00 0.00 0.00 4.46
2307 3890 4.467438 ACCCCAAAACATTTCATCCTGATC 59.533 41.667 0.00 0.00 0.00 2.92
2326 3909 1.136891 TCTGCACATGACTATCCACCG 59.863 52.381 0.00 0.00 0.00 4.94
2331 3914 2.168521 CACATGACTATCCACCGAACCT 59.831 50.000 0.00 0.00 0.00 3.50
2368 3951 1.358759 CAACCAACAAGCCGTCACC 59.641 57.895 0.00 0.00 0.00 4.02
2382 3965 1.070786 TCACCACCGCTCTCAAACC 59.929 57.895 0.00 0.00 0.00 3.27
2396 3979 0.243636 CAAACCGATTGAACAGGGCC 59.756 55.000 0.00 0.00 41.85 5.80
2445 4028 2.696864 CTCCAAGGAGGTAAGGCCA 58.303 57.895 5.01 0.00 40.61 5.36
2446 4029 0.991920 CTCCAAGGAGGTAAGGCCAA 59.008 55.000 5.01 0.00 40.61 4.52
2447 4030 0.696501 TCCAAGGAGGTAAGGCCAAC 59.303 55.000 5.01 1.83 40.61 3.77
2448 4031 0.698818 CCAAGGAGGTAAGGCCAACT 59.301 55.000 5.01 0.00 40.61 3.16
2449 4032 1.340114 CCAAGGAGGTAAGGCCAACTC 60.340 57.143 5.01 1.64 40.61 3.01
2451 4034 2.383608 GGAGGTAAGGCCAACTCCA 58.616 57.895 19.97 0.00 46.81 3.86
2452 4035 0.035343 GGAGGTAAGGCCAACTCCAC 60.035 60.000 19.97 8.35 46.81 4.02
2453 4036 0.035343 GAGGTAAGGCCAACTCCACC 60.035 60.000 5.01 2.21 40.61 4.61
2454 4037 1.376812 GGTAAGGCCAACTCCACCG 60.377 63.158 5.01 0.00 37.17 4.94
2455 4038 2.038837 GTAAGGCCAACTCCACCGC 61.039 63.158 5.01 0.00 0.00 5.68
2456 4039 3.599285 TAAGGCCAACTCCACCGCG 62.599 63.158 5.01 0.00 0.00 6.46
2471 4054 3.723348 GCGCGACCCCAAACAGAC 61.723 66.667 12.10 0.00 0.00 3.51
2472 4055 3.411351 CGCGACCCCAAACAGACG 61.411 66.667 0.00 0.00 0.00 4.18
2473 4056 2.280592 GCGACCCCAAACAGACGT 60.281 61.111 0.00 0.00 0.00 4.34
2474 4057 2.315386 GCGACCCCAAACAGACGTC 61.315 63.158 7.70 7.70 0.00 4.34
2475 4058 1.666872 CGACCCCAAACAGACGTCC 60.667 63.158 13.01 0.00 0.00 4.79
2476 4059 1.666872 GACCCCAAACAGACGTCCG 60.667 63.158 13.01 4.15 0.00 4.79
2477 4060 2.373434 GACCCCAAACAGACGTCCGT 62.373 60.000 13.01 4.97 0.00 4.69
2478 4061 1.227734 CCCCAAACAGACGTCCGTT 60.228 57.895 13.01 12.12 0.00 4.44
2479 4062 0.816421 CCCCAAACAGACGTCCGTTT 60.816 55.000 21.31 21.31 35.76 3.60
2480 4063 1.018910 CCCAAACAGACGTCCGTTTT 58.981 50.000 23.76 12.76 33.14 2.43
2481 4064 1.268335 CCCAAACAGACGTCCGTTTTG 60.268 52.381 23.76 20.29 33.14 2.44
2482 4065 1.399089 CCAAACAGACGTCCGTTTTGT 59.601 47.619 23.76 13.49 33.14 2.83
2483 4066 2.159490 CCAAACAGACGTCCGTTTTGTT 60.159 45.455 23.76 18.14 37.61 2.83
2484 4067 3.494232 CAAACAGACGTCCGTTTTGTTT 58.506 40.909 23.76 22.12 41.87 2.83
2485 4068 2.817538 ACAGACGTCCGTTTTGTTTG 57.182 45.000 13.01 2.87 0.00 2.93
2486 4069 1.399089 ACAGACGTCCGTTTTGTTTGG 59.601 47.619 13.01 0.00 0.00 3.28
2487 4070 1.666700 CAGACGTCCGTTTTGTTTGGA 59.333 47.619 13.01 0.00 0.00 3.53
2488 4071 2.289547 CAGACGTCCGTTTTGTTTGGAT 59.710 45.455 13.01 0.00 33.63 3.41
2489 4072 2.946990 AGACGTCCGTTTTGTTTGGATT 59.053 40.909 13.01 0.00 33.63 3.01
2490 4073 3.379057 AGACGTCCGTTTTGTTTGGATTT 59.621 39.130 13.01 0.00 33.63 2.17
2491 4074 4.106909 GACGTCCGTTTTGTTTGGATTTT 58.893 39.130 3.51 0.00 33.63 1.82
2492 4075 3.860536 ACGTCCGTTTTGTTTGGATTTTG 59.139 39.130 0.00 0.00 33.63 2.44
2493 4076 3.860536 CGTCCGTTTTGTTTGGATTTTGT 59.139 39.130 0.00 0.00 33.63 2.83
2494 4077 4.027214 CGTCCGTTTTGTTTGGATTTTGTC 60.027 41.667 0.00 0.00 33.63 3.18
2505 4088 3.842732 GGATTTTGTCCGTTTGGGTAG 57.157 47.619 0.00 0.00 37.23 3.18
2506 4089 2.490509 GGATTTTGTCCGTTTGGGTAGG 59.509 50.000 0.00 0.00 37.23 3.18
2507 4090 1.984066 TTTTGTCCGTTTGGGTAGGG 58.016 50.000 0.00 0.00 37.00 3.53
2508 4091 0.110869 TTTGTCCGTTTGGGTAGGGG 59.889 55.000 0.00 0.00 37.00 4.79
2509 4092 1.061324 TTGTCCGTTTGGGTAGGGGT 61.061 55.000 0.00 0.00 37.00 4.95
2510 4093 1.061324 TGTCCGTTTGGGTAGGGGTT 61.061 55.000 0.00 0.00 37.00 4.11
2511 4094 0.111061 GTCCGTTTGGGTAGGGGTTT 59.889 55.000 0.00 0.00 37.00 3.27
2512 4095 0.110869 TCCGTTTGGGTAGGGGTTTG 59.889 55.000 0.00 0.00 37.00 2.93
2513 4096 0.896479 CCGTTTGGGTAGGGGTTTGG 60.896 60.000 0.00 0.00 0.00 3.28
2514 4097 0.896479 CGTTTGGGTAGGGGTTTGGG 60.896 60.000 0.00 0.00 0.00 4.12
2515 4098 0.543410 GTTTGGGTAGGGGTTTGGGG 60.543 60.000 0.00 0.00 0.00 4.96
2516 4099 2.389313 TTTGGGTAGGGGTTTGGGGC 62.389 60.000 0.00 0.00 0.00 5.80
2517 4100 4.070265 GGGTAGGGGTTTGGGGCC 62.070 72.222 0.00 0.00 0.00 5.80
2518 4101 4.435970 GGTAGGGGTTTGGGGCCG 62.436 72.222 0.00 0.00 0.00 6.13
2519 4102 3.654143 GTAGGGGTTTGGGGCCGT 61.654 66.667 0.00 0.00 0.00 5.68
2520 4103 3.653078 TAGGGGTTTGGGGCCGTG 61.653 66.667 0.00 0.00 0.00 4.94
2534 4117 4.657824 CGTGTCCGGGCGTGTTCT 62.658 66.667 0.00 0.00 0.00 3.01
2535 4118 3.041940 GTGTCCGGGCGTGTTCTG 61.042 66.667 0.00 0.00 0.00 3.02
2536 4119 4.308458 TGTCCGGGCGTGTTCTGG 62.308 66.667 0.00 0.00 0.00 3.86
2539 4122 4.096003 CCGGGCGTGTTCTGGGAT 62.096 66.667 0.00 0.00 0.00 3.85
2540 4123 2.819595 CGGGCGTGTTCTGGGATG 60.820 66.667 0.00 0.00 0.00 3.51
2541 4124 3.134127 GGGCGTGTTCTGGGATGC 61.134 66.667 0.00 0.00 0.00 3.91
2542 4125 3.499737 GGCGTGTTCTGGGATGCG 61.500 66.667 0.00 0.00 0.00 4.73
2543 4126 3.499737 GCGTGTTCTGGGATGCGG 61.500 66.667 0.00 0.00 0.00 5.69
2544 4127 2.047274 CGTGTTCTGGGATGCGGT 60.047 61.111 0.00 0.00 0.00 5.68
2545 4128 2.390599 CGTGTTCTGGGATGCGGTG 61.391 63.158 0.00 0.00 0.00 4.94
2546 4129 2.040544 GTGTTCTGGGATGCGGTGG 61.041 63.158 0.00 0.00 0.00 4.61
2547 4130 2.351276 GTTCTGGGATGCGGTGGT 59.649 61.111 0.00 0.00 0.00 4.16
2548 4131 1.745489 GTTCTGGGATGCGGTGGTC 60.745 63.158 0.00 0.00 0.00 4.02
2549 4132 3.309436 TTCTGGGATGCGGTGGTCG 62.309 63.158 0.00 0.00 42.76 4.79
2550 4133 4.082523 CTGGGATGCGGTGGTCGT 62.083 66.667 0.00 0.00 41.72 4.34
2551 4134 4.386951 TGGGATGCGGTGGTCGTG 62.387 66.667 0.00 0.00 41.72 4.35
2578 4161 4.910722 CGCGGCCGCATCCATTTG 62.911 66.667 45.26 25.41 42.06 2.32
2580 4163 4.573950 CGGCCGCATCCATTTGCC 62.574 66.667 14.67 0.00 39.52 4.52
2581 4164 4.225703 GGCCGCATCCATTTGCCC 62.226 66.667 0.00 0.00 39.52 5.36
2582 4165 4.225703 GCCGCATCCATTTGCCCC 62.226 66.667 0.00 0.00 39.52 5.80
2583 4166 2.759149 CCGCATCCATTTGCCCCA 60.759 61.111 0.00 0.00 39.52 4.96
2584 4167 2.135581 CCGCATCCATTTGCCCCAT 61.136 57.895 0.00 0.00 39.52 4.00
2585 4168 1.364901 CGCATCCATTTGCCCCATC 59.635 57.895 0.00 0.00 39.52 3.51
2586 4169 1.750297 GCATCCATTTGCCCCATCC 59.250 57.895 0.00 0.00 36.60 3.51
2587 4170 0.761702 GCATCCATTTGCCCCATCCT 60.762 55.000 0.00 0.00 36.60 3.24
2588 4171 1.045407 CATCCATTTGCCCCATCCTG 58.955 55.000 0.00 0.00 0.00 3.86
2589 4172 0.638292 ATCCATTTGCCCCATCCTGT 59.362 50.000 0.00 0.00 0.00 4.00
2590 4173 0.033208 TCCATTTGCCCCATCCTGTC 60.033 55.000 0.00 0.00 0.00 3.51
2591 4174 1.044790 CCATTTGCCCCATCCTGTCC 61.045 60.000 0.00 0.00 0.00 4.02
2592 4175 1.076777 ATTTGCCCCATCCTGTCCG 60.077 57.895 0.00 0.00 0.00 4.79
2593 4176 3.936772 TTTGCCCCATCCTGTCCGC 62.937 63.158 0.00 0.00 0.00 5.54
2596 4179 4.530857 CCCCATCCTGTCCGCGTC 62.531 72.222 4.92 0.00 0.00 5.19
2597 4180 4.530857 CCCATCCTGTCCGCGTCC 62.531 72.222 4.92 0.00 0.00 4.79
2598 4181 3.770040 CCATCCTGTCCGCGTCCA 61.770 66.667 4.92 0.00 0.00 4.02
2599 4182 2.509336 CATCCTGTCCGCGTCCAC 60.509 66.667 4.92 0.00 0.00 4.02
2600 4183 2.680352 ATCCTGTCCGCGTCCACT 60.680 61.111 4.92 0.00 0.00 4.00
2601 4184 1.379443 ATCCTGTCCGCGTCCACTA 60.379 57.895 4.92 0.00 0.00 2.74
2602 4185 0.968901 ATCCTGTCCGCGTCCACTAA 60.969 55.000 4.92 0.00 0.00 2.24
2603 4186 1.180456 TCCTGTCCGCGTCCACTAAA 61.180 55.000 4.92 0.00 0.00 1.85
2604 4187 0.320073 CCTGTCCGCGTCCACTAAAA 60.320 55.000 4.92 0.00 0.00 1.52
2605 4188 1.504359 CTGTCCGCGTCCACTAAAAA 58.496 50.000 4.92 0.00 0.00 1.94
2606 4189 2.073816 CTGTCCGCGTCCACTAAAAAT 58.926 47.619 4.92 0.00 0.00 1.82
2607 4190 3.255725 CTGTCCGCGTCCACTAAAAATA 58.744 45.455 4.92 0.00 0.00 1.40
2608 4191 2.995258 TGTCCGCGTCCACTAAAAATAC 59.005 45.455 4.92 0.00 0.00 1.89
2609 4192 3.256558 GTCCGCGTCCACTAAAAATACT 58.743 45.455 4.92 0.00 0.00 2.12
2610 4193 4.082300 TGTCCGCGTCCACTAAAAATACTA 60.082 41.667 4.92 0.00 0.00 1.82
2611 4194 4.864247 GTCCGCGTCCACTAAAAATACTAA 59.136 41.667 4.92 0.00 0.00 2.24
2612 4195 5.521372 GTCCGCGTCCACTAAAAATACTAAT 59.479 40.000 4.92 0.00 0.00 1.73
2613 4196 6.036408 GTCCGCGTCCACTAAAAATACTAATT 59.964 38.462 4.92 0.00 0.00 1.40
2614 4197 6.256321 TCCGCGTCCACTAAAAATACTAATTC 59.744 38.462 4.92 0.00 0.00 2.17
2615 4198 6.036300 CCGCGTCCACTAAAAATACTAATTCA 59.964 38.462 4.92 0.00 0.00 2.57
2616 4199 7.117454 CGCGTCCACTAAAAATACTAATTCAG 58.883 38.462 0.00 0.00 0.00 3.02
2617 4200 6.905609 GCGTCCACTAAAAATACTAATTCAGC 59.094 38.462 0.00 0.00 0.00 4.26
2618 4201 7.407337 CGTCCACTAAAAATACTAATTCAGCC 58.593 38.462 0.00 0.00 0.00 4.85
2619 4202 7.065324 CGTCCACTAAAAATACTAATTCAGCCA 59.935 37.037 0.00 0.00 0.00 4.75
2620 4203 8.903820 GTCCACTAAAAATACTAATTCAGCCAT 58.096 33.333 0.00 0.00 0.00 4.40
2621 4204 9.120538 TCCACTAAAAATACTAATTCAGCCATC 57.879 33.333 0.00 0.00 0.00 3.51
2622 4205 8.070171 CCACTAAAAATACTAATTCAGCCATCG 58.930 37.037 0.00 0.00 0.00 3.84
2623 4206 8.612619 CACTAAAAATACTAATTCAGCCATCGT 58.387 33.333 0.00 0.00 0.00 3.73
2624 4207 8.827677 ACTAAAAATACTAATTCAGCCATCGTC 58.172 33.333 0.00 0.00 0.00 4.20
2625 4208 6.619801 AAAATACTAATTCAGCCATCGTCC 57.380 37.500 0.00 0.00 0.00 4.79
2626 4209 2.622064 ACTAATTCAGCCATCGTCCC 57.378 50.000 0.00 0.00 0.00 4.46
2627 4210 1.202533 ACTAATTCAGCCATCGTCCCG 60.203 52.381 0.00 0.00 0.00 5.14
2628 4211 0.105964 TAATTCAGCCATCGTCCCGG 59.894 55.000 0.00 0.00 0.00 5.73
2629 4212 1.910580 AATTCAGCCATCGTCCCGGT 61.911 55.000 0.00 0.00 0.00 5.28
2630 4213 1.910580 ATTCAGCCATCGTCCCGGTT 61.911 55.000 0.00 0.00 0.00 4.44
2631 4214 2.511600 CAGCCATCGTCCCGGTTC 60.512 66.667 0.00 0.00 0.00 3.62
2632 4215 3.000819 AGCCATCGTCCCGGTTCA 61.001 61.111 0.00 0.00 0.00 3.18
2633 4216 2.189521 GCCATCGTCCCGGTTCAT 59.810 61.111 0.00 0.00 0.00 2.57
2634 4217 1.887707 GCCATCGTCCCGGTTCATC 60.888 63.158 0.00 0.00 0.00 2.92
2635 4218 1.520192 CCATCGTCCCGGTTCATCA 59.480 57.895 0.00 0.00 0.00 3.07
2636 4219 0.810031 CCATCGTCCCGGTTCATCAC 60.810 60.000 0.00 0.00 0.00 3.06
2637 4220 1.141019 ATCGTCCCGGTTCATCACG 59.859 57.895 0.00 0.00 0.00 4.35
2638 4221 2.901051 ATCGTCCCGGTTCATCACGC 62.901 60.000 0.00 0.00 0.00 5.34
2639 4222 2.818274 GTCCCGGTTCATCACGCC 60.818 66.667 0.00 0.00 0.00 5.68
2640 4223 4.444838 TCCCGGTTCATCACGCCG 62.445 66.667 0.00 0.00 44.55 6.46
2644 4227 4.778143 GGTTCATCACGCCGGCCT 62.778 66.667 23.46 6.45 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 116 7.447374 TCTTCGATGTGATAAATTTTGGTGT 57.553 32.000 0.00 0.00 0.00 4.16
127 130 4.161333 GTTCCTGCAAATTCTTCGATGTG 58.839 43.478 0.00 0.00 0.00 3.21
133 136 7.094805 TGTGTACTATGTTCCTGCAAATTCTTC 60.095 37.037 0.00 0.00 0.00 2.87
194 197 9.825972 GAACAGAAATCATATTTCGAAGTTTCA 57.174 29.630 0.00 0.00 33.86 2.69
359 364 3.325716 GGGTCTATTGGGTTCCGCTATTA 59.674 47.826 0.00 0.00 0.00 0.98
368 373 2.923629 TGCTTAAGGGGTCTATTGGGTT 59.076 45.455 4.29 0.00 0.00 4.11
605 613 0.407139 AGGGCAGGCATTCTTCACTT 59.593 50.000 0.00 0.00 0.00 3.16
695 706 5.112686 GGAGGAAGTGTAAATGCTACTCAG 58.887 45.833 0.00 0.00 0.00 3.35
716 727 8.709272 TCCAAATATATTTCTTCATGCATGGA 57.291 30.769 25.97 17.63 0.00 3.41
745 774 9.886132 TGGGAGTTGTCTATTTACTCTTTTATC 57.114 33.333 0.00 0.00 38.62 1.75
751 780 6.936968 AGTTGGGAGTTGTCTATTTACTCT 57.063 37.500 0.00 0.00 38.62 3.24
752 781 7.609056 TGTAGTTGGGAGTTGTCTATTTACTC 58.391 38.462 0.00 0.00 38.02 2.59
753 782 7.549147 TGTAGTTGGGAGTTGTCTATTTACT 57.451 36.000 0.00 0.00 0.00 2.24
754 783 8.665685 CAATGTAGTTGGGAGTTGTCTATTTAC 58.334 37.037 0.00 0.00 34.06 2.01
761 807 2.488153 GGCAATGTAGTTGGGAGTTGTC 59.512 50.000 0.00 0.00 38.29 3.18
778 824 7.407393 TGACTGATTTGATATGAAATGGCAA 57.593 32.000 4.77 0.00 0.00 4.52
794 840 9.539825 GAGAACAATGATAGTGTATGACTGATT 57.460 33.333 0.00 0.00 35.96 2.57
807 857 7.559170 AGGAAATGGAAAGGAGAACAATGATAG 59.441 37.037 0.00 0.00 0.00 2.08
819 869 6.934645 CGTGCTTATATAGGAAATGGAAAGGA 59.065 38.462 0.00 0.00 0.00 3.36
829 879 3.639561 TGAGGTGCGTGCTTATATAGGAA 59.360 43.478 0.00 0.00 0.00 3.36
874 924 1.610886 GGAGCTAGTGGGTGTGGTTTC 60.611 57.143 0.00 0.00 0.00 2.78
876 926 1.489560 GGGAGCTAGTGGGTGTGGTT 61.490 60.000 0.00 0.00 0.00 3.67
877 927 1.918800 GGGAGCTAGTGGGTGTGGT 60.919 63.158 0.00 0.00 0.00 4.16
879 929 1.599047 CTGGGAGCTAGTGGGTGTG 59.401 63.158 0.00 0.00 0.00 3.82
880 930 2.294078 GCTGGGAGCTAGTGGGTGT 61.294 63.158 0.00 0.00 38.45 4.16
913 963 1.396648 TCACTCACACGCACAAGTTTG 59.603 47.619 0.00 0.00 0.00 2.93
916 966 0.175760 ACTCACTCACACGCACAAGT 59.824 50.000 0.00 0.00 0.00 3.16
919 969 0.249031 CTCACTCACTCACACGCACA 60.249 55.000 0.00 0.00 0.00 4.57
929 979 4.413928 AGCTCTCGCTCACTCACT 57.586 55.556 0.00 0.00 45.15 3.41
939 989 0.390472 GTGGTTTCCCTGAGCTCTCG 60.390 60.000 16.19 5.95 0.00 4.04
941 991 1.492993 GGGTGGTTTCCCTGAGCTCT 61.493 60.000 16.19 0.00 43.85 4.09
950 1000 2.160205 GAGCTTTGTAGGGTGGTTTCC 58.840 52.381 0.00 0.00 0.00 3.13
1059 1109 3.394836 GTCTTCTCCTGCCCCGCT 61.395 66.667 0.00 0.00 0.00 5.52
1092 1142 2.650116 GCTGGGAAGCTCCGTCTCA 61.650 63.158 0.00 0.00 37.43 3.27
1113 1163 2.283894 TCCTTGAGCGGCAGGAGA 60.284 61.111 1.45 0.00 0.00 3.71
1741 1809 4.687901 TCAGGTGATACATATGTGTGGG 57.312 45.455 18.81 2.05 39.39 4.61
1876 1946 5.178996 CGTAGCAGTAGTAGTACCATCGATT 59.821 44.000 4.02 0.00 0.00 3.34
1954 2024 2.923020 CCAATTTACTCACGCATTTGCC 59.077 45.455 0.00 0.00 37.91 4.52
1962 2032 1.339631 TGCTCCCCCAATTTACTCACG 60.340 52.381 0.00 0.00 0.00 4.35
1984 2054 0.319728 CAGAGGTGAGGTGACCACTG 59.680 60.000 3.63 0.00 44.81 3.66
2063 2543 0.673644 CGCACTTCCCGAGGTTCAAT 60.674 55.000 0.00 0.00 0.00 2.57
2081 2561 1.588674 TCCAAAATATAGTGCGCCCG 58.411 50.000 4.18 0.00 0.00 6.13
2084 2564 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
2085 2565 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
2092 2572 5.017093 TGGTTTCCCTCCATTCCAAAATA 57.983 39.130 0.00 0.00 0.00 1.40
2096 2576 2.069775 TCTGGTTTCCCTCCATTCCAA 58.930 47.619 0.00 0.00 34.26 3.53
2110 2590 4.526650 AGTTGTTCAGTTTTTGGTCTGGTT 59.473 37.500 0.00 0.00 33.13 3.67
2111 2591 4.086457 AGTTGTTCAGTTTTTGGTCTGGT 58.914 39.130 0.00 0.00 33.13 4.00
2112 2592 4.399303 AGAGTTGTTCAGTTTTTGGTCTGG 59.601 41.667 0.00 0.00 33.13 3.86
2113 2593 5.123820 TGAGAGTTGTTCAGTTTTTGGTCTG 59.876 40.000 0.00 0.00 0.00 3.51
2114 2594 5.123979 GTGAGAGTTGTTCAGTTTTTGGTCT 59.876 40.000 0.00 0.00 0.00 3.85
2115 2595 5.106317 TGTGAGAGTTGTTCAGTTTTTGGTC 60.106 40.000 0.00 0.00 0.00 4.02
2117 2597 5.095490 GTGTGAGAGTTGTTCAGTTTTTGG 58.905 41.667 0.00 0.00 0.00 3.28
2280 3863 4.040339 AGGATGAAATGTTTTGGGGTCAAC 59.960 41.667 0.00 0.00 31.78 3.18
2307 3890 1.136891 TCGGTGGATAGTCATGTGCAG 59.863 52.381 0.00 0.00 0.00 4.41
2331 3914 0.111639 GGGCCAGACTTGTTACCCAA 59.888 55.000 4.39 0.00 37.30 4.12
2376 3959 1.243902 GCCCTGTTCAATCGGTTTGA 58.756 50.000 0.00 0.00 42.62 2.69
2382 3965 0.606401 ACACTGGCCCTGTTCAATCG 60.606 55.000 0.00 0.00 0.00 3.34
2389 3972 1.352622 TTCCTCAACACTGGCCCTGT 61.353 55.000 0.00 0.00 0.00 4.00
2396 3979 4.681942 CGAAGAGTACTTTCCTCAACACTG 59.318 45.833 0.00 0.00 36.39 3.66
2454 4037 3.723348 GTCTGTTTGGGGTCGCGC 61.723 66.667 0.00 0.00 0.00 6.86
2455 4038 3.411351 CGTCTGTTTGGGGTCGCG 61.411 66.667 0.00 0.00 0.00 5.87
2456 4039 2.280592 ACGTCTGTTTGGGGTCGC 60.281 61.111 0.00 0.00 0.00 5.19
2457 4040 1.666872 GGACGTCTGTTTGGGGTCG 60.667 63.158 16.46 0.00 0.00 4.79
2458 4041 1.666872 CGGACGTCTGTTTGGGGTC 60.667 63.158 16.54 0.00 0.00 4.46
2459 4042 1.974973 AACGGACGTCTGTTTGGGGT 61.975 55.000 32.15 13.55 42.39 4.95
2460 4043 1.227734 AACGGACGTCTGTTTGGGG 60.228 57.895 32.15 7.67 42.39 4.96
2461 4044 4.449391 AACGGACGTCTGTTTGGG 57.551 55.556 32.15 8.92 42.39 4.12
2465 4048 2.159490 CCAAACAAAACGGACGTCTGTT 60.159 45.455 32.15 32.15 46.62 3.16
2466 4049 1.399089 CCAAACAAAACGGACGTCTGT 59.601 47.619 24.31 24.31 36.96 3.41
2467 4050 1.666700 TCCAAACAAAACGGACGTCTG 59.333 47.619 22.81 22.81 0.00 3.51
2468 4051 2.027003 TCCAAACAAAACGGACGTCT 57.973 45.000 16.46 0.00 0.00 4.18
2469 4052 3.343380 AATCCAAACAAAACGGACGTC 57.657 42.857 7.13 7.13 0.00 4.34
2470 4053 3.786516 AAATCCAAACAAAACGGACGT 57.213 38.095 0.00 0.00 0.00 4.34
2471 4054 3.860536 ACAAAATCCAAACAAAACGGACG 59.139 39.130 0.00 0.00 0.00 4.79
2472 4055 5.383984 GACAAAATCCAAACAAAACGGAC 57.616 39.130 0.00 0.00 0.00 4.79
2485 4068 2.490509 CCTACCCAAACGGACAAAATCC 59.509 50.000 0.00 0.00 45.20 3.01
2486 4069 2.490509 CCCTACCCAAACGGACAAAATC 59.509 50.000 0.00 0.00 34.64 2.17
2487 4070 2.521126 CCCTACCCAAACGGACAAAAT 58.479 47.619 0.00 0.00 34.64 1.82
2488 4071 1.479021 CCCCTACCCAAACGGACAAAA 60.479 52.381 0.00 0.00 34.64 2.44
2489 4072 0.110869 CCCCTACCCAAACGGACAAA 59.889 55.000 0.00 0.00 34.64 2.83
2490 4073 1.061324 ACCCCTACCCAAACGGACAA 61.061 55.000 0.00 0.00 34.64 3.18
2491 4074 1.061324 AACCCCTACCCAAACGGACA 61.061 55.000 0.00 0.00 34.64 4.02
2492 4075 0.111061 AAACCCCTACCCAAACGGAC 59.889 55.000 0.00 0.00 34.64 4.79
2493 4076 0.110869 CAAACCCCTACCCAAACGGA 59.889 55.000 0.00 0.00 34.64 4.69
2494 4077 0.896479 CCAAACCCCTACCCAAACGG 60.896 60.000 0.00 0.00 37.81 4.44
2495 4078 0.896479 CCCAAACCCCTACCCAAACG 60.896 60.000 0.00 0.00 0.00 3.60
2496 4079 0.543410 CCCCAAACCCCTACCCAAAC 60.543 60.000 0.00 0.00 0.00 2.93
2497 4080 1.862162 CCCCAAACCCCTACCCAAA 59.138 57.895 0.00 0.00 0.00 3.28
2498 4081 2.859274 GCCCCAAACCCCTACCCAA 61.859 63.158 0.00 0.00 0.00 4.12
2499 4082 3.269632 GCCCCAAACCCCTACCCA 61.270 66.667 0.00 0.00 0.00 4.51
2500 4083 4.070265 GGCCCCAAACCCCTACCC 62.070 72.222 0.00 0.00 0.00 3.69
2501 4084 4.435970 CGGCCCCAAACCCCTACC 62.436 72.222 0.00 0.00 0.00 3.18
2502 4085 3.654143 ACGGCCCCAAACCCCTAC 61.654 66.667 0.00 0.00 0.00 3.18
2503 4086 3.653078 CACGGCCCCAAACCCCTA 61.653 66.667 0.00 0.00 0.00 3.53
2517 4100 4.657824 AGAACACGCCCGGACACG 62.658 66.667 0.73 6.47 40.55 4.49
2518 4101 3.041940 CAGAACACGCCCGGACAC 61.042 66.667 0.73 0.00 0.00 3.67
2519 4102 4.308458 CCAGAACACGCCCGGACA 62.308 66.667 0.73 0.00 0.00 4.02
2522 4105 4.096003 ATCCCAGAACACGCCCGG 62.096 66.667 0.00 0.00 0.00 5.73
2523 4106 2.819595 CATCCCAGAACACGCCCG 60.820 66.667 0.00 0.00 0.00 6.13
2524 4107 3.134127 GCATCCCAGAACACGCCC 61.134 66.667 0.00 0.00 0.00 6.13
2525 4108 3.499737 CGCATCCCAGAACACGCC 61.500 66.667 0.00 0.00 0.00 5.68
2526 4109 3.499737 CCGCATCCCAGAACACGC 61.500 66.667 0.00 0.00 0.00 5.34
2527 4110 2.047274 ACCGCATCCCAGAACACG 60.047 61.111 0.00 0.00 0.00 4.49
2528 4111 2.040544 CCACCGCATCCCAGAACAC 61.041 63.158 0.00 0.00 0.00 3.32
2529 4112 2.350895 CCACCGCATCCCAGAACA 59.649 61.111 0.00 0.00 0.00 3.18
2530 4113 1.745489 GACCACCGCATCCCAGAAC 60.745 63.158 0.00 0.00 0.00 3.01
2531 4114 2.668632 GACCACCGCATCCCAGAA 59.331 61.111 0.00 0.00 0.00 3.02
2532 4115 3.770040 CGACCACCGCATCCCAGA 61.770 66.667 0.00 0.00 0.00 3.86
2533 4116 4.082523 ACGACCACCGCATCCCAG 62.083 66.667 0.00 0.00 43.32 4.45
2534 4117 4.386951 CACGACCACCGCATCCCA 62.387 66.667 0.00 0.00 43.32 4.37
2561 4144 4.910722 CAAATGGATGCGGCCGCG 62.911 66.667 41.73 23.24 45.51 6.46
2568 4151 0.761702 AGGATGGGGCAAATGGATGC 60.762 55.000 0.00 0.00 45.67 3.91
2569 4152 1.045407 CAGGATGGGGCAAATGGATG 58.955 55.000 0.00 0.00 0.00 3.51
2570 4153 0.638292 ACAGGATGGGGCAAATGGAT 59.362 50.000 0.00 0.00 43.62 3.41
2571 4154 0.033208 GACAGGATGGGGCAAATGGA 60.033 55.000 0.00 0.00 43.62 3.41
2572 4155 1.044790 GGACAGGATGGGGCAAATGG 61.045 60.000 0.00 0.00 43.62 3.16
2573 4156 1.386525 CGGACAGGATGGGGCAAATG 61.387 60.000 0.00 0.00 43.62 2.32
2574 4157 1.076777 CGGACAGGATGGGGCAAAT 60.077 57.895 0.00 0.00 43.62 2.32
2575 4158 2.354729 CGGACAGGATGGGGCAAA 59.645 61.111 0.00 0.00 43.62 3.68
2576 4159 4.424711 GCGGACAGGATGGGGCAA 62.425 66.667 0.00 0.00 43.62 4.52
2579 4162 4.530857 GACGCGGACAGGATGGGG 62.531 72.222 12.47 0.00 43.62 4.96
2580 4163 4.530857 GGACGCGGACAGGATGGG 62.531 72.222 12.47 0.00 43.62 4.00
2581 4164 3.770040 TGGACGCGGACAGGATGG 61.770 66.667 12.47 0.00 43.62 3.51
2582 4165 1.663379 TAGTGGACGCGGACAGGATG 61.663 60.000 12.47 0.00 46.00 3.51
2583 4166 0.968901 TTAGTGGACGCGGACAGGAT 60.969 55.000 12.47 0.67 0.00 3.24
2584 4167 1.180456 TTTAGTGGACGCGGACAGGA 61.180 55.000 12.47 0.00 0.00 3.86
2585 4168 0.320073 TTTTAGTGGACGCGGACAGG 60.320 55.000 12.47 0.00 0.00 4.00
2586 4169 1.504359 TTTTTAGTGGACGCGGACAG 58.496 50.000 12.47 0.00 0.00 3.51
2587 4170 2.172851 ATTTTTAGTGGACGCGGACA 57.827 45.000 12.47 5.88 0.00 4.02
2588 4171 3.256558 AGTATTTTTAGTGGACGCGGAC 58.743 45.455 12.47 3.78 0.00 4.79
2589 4172 3.598019 AGTATTTTTAGTGGACGCGGA 57.402 42.857 12.47 0.00 0.00 5.54
2590 4173 5.978934 ATTAGTATTTTTAGTGGACGCGG 57.021 39.130 12.47 0.00 0.00 6.46
2591 4174 6.996106 TGAATTAGTATTTTTAGTGGACGCG 58.004 36.000 3.53 3.53 0.00 6.01
2592 4175 6.905609 GCTGAATTAGTATTTTTAGTGGACGC 59.094 38.462 0.00 0.00 0.00 5.19
2593 4176 7.065324 TGGCTGAATTAGTATTTTTAGTGGACG 59.935 37.037 0.00 0.00 0.00 4.79
2594 4177 8.276252 TGGCTGAATTAGTATTTTTAGTGGAC 57.724 34.615 0.00 0.00 0.00 4.02
2595 4178 9.120538 GATGGCTGAATTAGTATTTTTAGTGGA 57.879 33.333 0.00 0.00 0.00 4.02
2596 4179 8.070171 CGATGGCTGAATTAGTATTTTTAGTGG 58.930 37.037 0.00 0.00 0.00 4.00
2597 4180 8.612619 ACGATGGCTGAATTAGTATTTTTAGTG 58.387 33.333 0.00 0.00 0.00 2.74
2598 4181 8.732746 ACGATGGCTGAATTAGTATTTTTAGT 57.267 30.769 0.00 0.00 0.00 2.24
2599 4182 8.283291 GGACGATGGCTGAATTAGTATTTTTAG 58.717 37.037 0.00 0.00 0.00 1.85
2600 4183 7.227910 GGGACGATGGCTGAATTAGTATTTTTA 59.772 37.037 0.00 0.00 0.00 1.52
2601 4184 6.039382 GGGACGATGGCTGAATTAGTATTTTT 59.961 38.462 0.00 0.00 0.00 1.94
2602 4185 5.531287 GGGACGATGGCTGAATTAGTATTTT 59.469 40.000 0.00 0.00 0.00 1.82
2603 4186 5.063880 GGGACGATGGCTGAATTAGTATTT 58.936 41.667 0.00 0.00 0.00 1.40
2604 4187 4.642429 GGGACGATGGCTGAATTAGTATT 58.358 43.478 0.00 0.00 0.00 1.89
2605 4188 4.273148 GGGACGATGGCTGAATTAGTAT 57.727 45.455 0.00 0.00 0.00 2.12
2606 4189 3.746045 GGGACGATGGCTGAATTAGTA 57.254 47.619 0.00 0.00 0.00 1.82
2607 4190 2.622064 GGGACGATGGCTGAATTAGT 57.378 50.000 0.00 0.00 0.00 2.24
2622 4205 2.818274 GGCGTGATGAACCGGGAC 60.818 66.667 6.32 0.00 0.00 4.46
2623 4206 4.444838 CGGCGTGATGAACCGGGA 62.445 66.667 6.32 0.00 43.23 5.14
2627 4210 4.778143 AGGCCGGCGTGATGAACC 62.778 66.667 22.97 2.65 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.