Multiple sequence alignment - TraesCS5B01G092400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G092400 chr5B 100.000 5901 0 0 1750 7650 121247530 121253430 0.000000e+00 10898.0
1 TraesCS5B01G092400 chr5B 100.000 1425 0 0 1 1425 121245781 121247205 0.000000e+00 2632.0
2 TraesCS5B01G092400 chr5B 93.992 516 23 5 178 691 116814928 116814419 0.000000e+00 774.0
3 TraesCS5B01G092400 chr5B 95.425 306 11 3 7346 7650 585481460 585481157 1.150000e-132 484.0
4 TraesCS5B01G092400 chr5B 94.839 310 13 3 7342 7650 556186110 556186417 1.490000e-131 481.0
5 TraesCS5B01G092400 chr5B 94.709 189 9 1 137 325 116728140 116728327 7.510000e-75 292.0
6 TraesCS5B01G092400 chr5D 96.081 5563 127 34 1822 7347 112242232 112247740 0.000000e+00 8981.0
7 TraesCS5B01G092400 chr5D 94.003 667 33 6 25 686 112240690 112241354 0.000000e+00 1003.0
8 TraesCS5B01G092400 chr5D 89.210 658 46 14 771 1412 112241509 112242157 0.000000e+00 798.0
9 TraesCS5B01G092400 chr5D 86.515 571 65 7 43 605 112103251 112103817 1.090000e-172 617.0
10 TraesCS5B01G092400 chr5D 97.030 101 3 0 704 804 112241410 112241510 3.670000e-38 171.0
11 TraesCS5B01G092400 chr5D 89.831 59 3 3 653 708 353799562 353799620 1.060000e-08 73.1
12 TraesCS5B01G092400 chr5A 95.634 5428 135 37 1947 7347 115093376 115098728 0.000000e+00 8617.0
13 TraesCS5B01G092400 chr5A 91.223 638 46 7 40 672 115080380 115081012 0.000000e+00 859.0
14 TraesCS5B01G092400 chr5A 89.009 555 32 13 808 1358 115092338 115092867 0.000000e+00 660.0
15 TraesCS5B01G092400 chr5A 87.805 205 12 5 771 972 115081172 115081366 2.150000e-55 228.0
16 TraesCS5B01G092400 chr5A 92.593 108 5 2 700 804 115081066 115081173 1.330000e-32 152.0
17 TraesCS5B01G092400 chrUn 100.000 413 0 0 4796 5208 477434327 477433915 0.000000e+00 763.0
18 TraesCS5B01G092400 chr7B 96.440 309 9 2 7343 7650 89004608 89004915 6.850000e-140 508.0
19 TraesCS5B01G092400 chr7B 96.078 306 11 1 7346 7650 104761487 104761182 1.480000e-136 497.0
20 TraesCS5B01G092400 chr4B 96.104 308 9 3 7345 7650 94949484 94949178 4.120000e-137 499.0
21 TraesCS5B01G092400 chr2B 95.469 309 13 1 7343 7650 549540511 549540819 6.900000e-135 492.0
22 TraesCS5B01G092400 chr2B 88.603 272 28 2 3713 3983 18809334 18809065 2.060000e-85 327.0
23 TraesCS5B01G092400 chr3B 96.000 300 11 1 7344 7642 11922892 11922593 3.210000e-133 486.0
24 TraesCS5B01G092400 chr3B 94.839 310 11 2 7346 7650 790408606 790408297 5.370000e-131 479.0
25 TraesCS5B01G092400 chr3B 89.354 263 27 1 3721 3983 29495453 29495714 5.720000e-86 329.0
26 TraesCS5B01G092400 chr3B 89.098 266 25 3 3721 3985 457573981 457574243 2.060000e-85 327.0
27 TraesCS5B01G092400 chr3B 88.764 267 28 2 3718 3983 284380507 284380242 7.400000e-85 326.0
28 TraesCS5B01G092400 chr1B 95.425 306 12 2 7346 7650 649309324 649309020 3.210000e-133 486.0
29 TraesCS5B01G092400 chr1B 89.831 177 16 1 3462 3636 583163770 583163594 7.720000e-55 226.0
30 TraesCS5B01G092400 chr1B 87.387 111 12 1 3528 3636 583204552 583204442 8.060000e-25 126.0
31 TraesCS5B01G092400 chr3A 89.734 263 24 3 3720 3981 91026755 91026495 4.420000e-87 333.0
32 TraesCS5B01G092400 chr3A 89.098 266 28 1 3718 3983 706867801 706868065 5.720000e-86 329.0
33 TraesCS5B01G092400 chr3A 84.932 73 7 3 653 722 40931791 40931862 3.830000e-08 71.3
34 TraesCS5B01G092400 chr3A 85.507 69 5 3 651 717 557265706 557265771 4.950000e-07 67.6
35 TraesCS5B01G092400 chr3A 85.507 69 5 3 651 717 557266207 557266272 4.950000e-07 67.6
36 TraesCS5B01G092400 chr3A 85.507 69 5 3 651 717 557267850 557267915 4.950000e-07 67.6
37 TraesCS5B01G092400 chr3D 88.530 279 25 6 3710 3985 532171824 532172098 1.590000e-86 331.0
38 TraesCS5B01G092400 chr7D 93.220 59 2 2 653 711 13905656 13905712 1.370000e-12 86.1
39 TraesCS5B01G092400 chr1A 94.000 50 3 0 654 703 589648808 589648857 8.230000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G092400 chr5B 121245781 121253430 7649 False 6765.00 10898 100.000000 1 7650 2 chr5B.!!$F3 7649
1 TraesCS5B01G092400 chr5B 116814419 116814928 509 True 774.00 774 93.992000 178 691 1 chr5B.!!$R1 513
2 TraesCS5B01G092400 chr5D 112240690 112247740 7050 False 2738.25 8981 94.081000 25 7347 4 chr5D.!!$F3 7322
3 TraesCS5B01G092400 chr5D 112103251 112103817 566 False 617.00 617 86.515000 43 605 1 chr5D.!!$F1 562
4 TraesCS5B01G092400 chr5A 115092338 115098728 6390 False 4638.50 8617 92.321500 808 7347 2 chr5A.!!$F2 6539
5 TraesCS5B01G092400 chr5A 115080380 115081366 986 False 413.00 859 90.540333 40 972 3 chr5A.!!$F1 932

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
936 1018 0.035343 GGGTCTCCGGGAAAAGAAGG 60.035 60.000 0.00 0.00 0.00 3.46 F
1157 1242 0.108520 TAAGATTTTCCGCGACCGCT 60.109 50.000 8.23 0.00 39.32 5.52 F
1416 1512 0.240945 GTGGAATGGCTTTGACACCG 59.759 55.000 6.37 0.00 0.00 4.94 F
1421 1517 0.324943 ATGGCTTTGACACCGCTACT 59.675 50.000 0.00 0.00 0.00 2.57 F
1422 1518 0.602638 TGGCTTTGACACCGCTACTG 60.603 55.000 0.00 0.00 0.00 2.74 F
1423 1519 0.602905 GGCTTTGACACCGCTACTGT 60.603 55.000 0.00 0.00 0.00 3.55 F
2610 2784 1.075542 CATTACTTGTTGCCTCGCGA 58.924 50.000 9.26 9.26 0.00 5.87 F
2993 3167 3.302344 GGCCAAACATGCCCGTGT 61.302 61.111 0.00 0.00 43.33 4.49 F
4677 4864 1.761784 CTGCCAGAGGATTAGACAGCT 59.238 52.381 0.00 0.00 0.00 4.24 F
4793 4980 0.181350 CCCTTTAGCTAGCCCCACAG 59.819 60.000 12.13 0.52 0.00 3.66 F
4794 4981 0.912486 CCTTTAGCTAGCCCCACAGT 59.088 55.000 12.13 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2148 2322 0.618107 TCCCCCGGTAGTGTATGCAA 60.618 55.000 0.00 0.00 0.00 4.08 R
2227 2401 1.311859 CCACACAACTGCACACTGAT 58.688 50.000 0.00 0.00 0.00 2.90 R
2381 2555 2.331194 CAAGTGCAGCAATAAACCAGC 58.669 47.619 0.00 0.00 0.00 4.85 R
2798 2972 3.189606 TCCCAACCTTCCACATGTAGAT 58.810 45.455 0.00 0.00 0.00 1.98 R
2801 2975 4.044065 AGAAATCCCAACCTTCCACATGTA 59.956 41.667 0.00 0.00 0.00 2.29 R
3421 3596 4.123506 GGCTCAGTTAAAGGTATGAGAGC 58.876 47.826 5.28 0.00 44.69 4.09 R
4575 4762 1.337447 CCAGCAATTTCCCTGTGCTTG 60.337 52.381 0.00 0.00 46.25 4.01 R
4793 4980 6.512297 ACCCAAACAATTGTACAATCTGAAC 58.488 36.000 21.02 0.00 34.60 3.18 R
6429 6618 0.396139 ATTAGGGCGGTACCTCGTGA 60.396 55.000 10.90 1.36 42.09 4.35 R
6612 6802 0.461870 CGCTTCATGGGATTCCGTCA 60.462 55.000 0.00 0.00 35.24 4.35 R
6779 6979 1.199097 GAAATTCTTCGAAAGCGCCCA 59.801 47.619 2.29 0.00 37.46 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 149 1.466858 TTCCCCTCCAACATTCCCTT 58.533 50.000 0.00 0.00 0.00 3.95
199 202 5.015515 TCATTCATTTTGCCATCACCACTA 58.984 37.500 0.00 0.00 0.00 2.74
203 206 5.504853 TCATTTTGCCATCACCACTACATA 58.495 37.500 0.00 0.00 0.00 2.29
478 486 1.271656 ACCAAACTTCTAGTCGACGGG 59.728 52.381 10.46 7.19 0.00 5.28
626 637 7.838079 TGGTAGGCATGCAGATTATTAAAAT 57.162 32.000 21.36 0.00 0.00 1.82
696 709 9.469807 AAGAGCGTTTAGATCATTATTACAGAG 57.530 33.333 0.00 0.00 37.82 3.35
697 710 8.085296 AGAGCGTTTAGATCATTATTACAGAGG 58.915 37.037 0.00 0.00 37.82 3.69
698 711 7.155328 AGCGTTTAGATCATTATTACAGAGGG 58.845 38.462 0.00 0.00 0.00 4.30
717 768 4.876580 AGGGAGTATTAGTTTACGGAGGT 58.123 43.478 0.00 0.00 0.00 3.85
830 912 1.223187 GAACATGGACCGAACAACGT 58.777 50.000 0.00 0.00 40.78 3.99
849 931 4.488879 ACGTTTTAGGATTAGTGACGGAC 58.511 43.478 0.00 0.00 33.74 4.79
850 932 4.219288 ACGTTTTAGGATTAGTGACGGACT 59.781 41.667 0.00 0.00 38.88 3.85
879 961 0.248289 ATACACACCTTTCCCGTCCG 59.752 55.000 0.00 0.00 0.00 4.79
934 1016 2.303890 GTTAGGGTCTCCGGGAAAAGAA 59.696 50.000 0.00 0.00 38.33 2.52
936 1018 0.035343 GGGTCTCCGGGAAAAGAAGG 60.035 60.000 0.00 0.00 0.00 3.46
937 1019 0.677098 GGTCTCCGGGAAAAGAAGGC 60.677 60.000 0.00 0.00 0.00 4.35
938 1020 0.325272 GTCTCCGGGAAAAGAAGGCT 59.675 55.000 0.00 0.00 0.00 4.58
939 1021 0.324943 TCTCCGGGAAAAGAAGGCTG 59.675 55.000 0.00 0.00 0.00 4.85
949 1034 2.360475 GAAGGCTGTGGTGGAGGC 60.360 66.667 0.00 0.00 36.26 4.70
972 1057 2.107366 GAAGAAGACTCAGGAGAGGGG 58.893 57.143 2.79 0.00 46.44 4.79
973 1058 1.089123 AGAAGACTCAGGAGAGGGGT 58.911 55.000 2.79 0.00 46.44 4.95
1052 1137 2.886124 GCGAGCAAGCGAGGTACC 60.886 66.667 2.73 2.73 0.00 3.34
1069 1154 1.486211 ACCCAGATCGAACCCACTAG 58.514 55.000 0.00 0.00 0.00 2.57
1070 1155 1.273098 ACCCAGATCGAACCCACTAGT 60.273 52.381 0.00 0.00 0.00 2.57
1071 1156 2.024655 ACCCAGATCGAACCCACTAGTA 60.025 50.000 0.00 0.00 0.00 1.82
1072 1157 2.623889 CCCAGATCGAACCCACTAGTAG 59.376 54.545 0.00 0.00 0.00 2.57
1075 1160 4.202030 CCAGATCGAACCCACTAGTAGTTC 60.202 50.000 20.47 20.47 37.20 3.01
1084 1169 5.840081 ACCCACTAGTAGTTCCTAATCACT 58.160 41.667 0.00 0.00 0.00 3.41
1092 1177 1.135199 GTTCCTAATCACTGCCGACGA 60.135 52.381 0.00 0.00 0.00 4.20
1119 1204 3.157949 CCCCTCTCCCCTCTTCGC 61.158 72.222 0.00 0.00 0.00 4.70
1122 1207 2.776913 CCTCTCCCCTCTTCGCGTC 61.777 68.421 5.77 0.00 0.00 5.19
1157 1242 0.108520 TAAGATTTTCCGCGACCGCT 60.109 50.000 8.23 0.00 39.32 5.52
1239 1326 9.256477 TGCTGTACTAACATATGTATTTAGTGC 57.744 33.333 21.29 20.31 38.31 4.40
1277 1367 3.207547 AAAGGCGCGGCTTTGTTCC 62.208 57.895 46.46 21.73 0.00 3.62
1289 1380 1.602377 CTTTGTTCCCGACTTGTCACC 59.398 52.381 1.59 0.00 0.00 4.02
1366 1462 2.839486 TGGACTGTTAGCTTCACTGG 57.161 50.000 0.00 0.00 0.00 4.00
1370 1466 4.716784 TGGACTGTTAGCTTCACTGGATAT 59.283 41.667 0.00 0.00 0.00 1.63
1380 1476 4.689705 GCTTCACTGGATATTGGATTGGGA 60.690 45.833 0.00 0.00 0.00 4.37
1397 1493 3.912248 TGGGAGTAGCTTAAGGGTAGAG 58.088 50.000 4.29 0.00 0.00 2.43
1404 1500 4.762289 AGCTTAAGGGTAGAGTGGAATG 57.238 45.455 4.29 0.00 0.00 2.67
1412 1508 3.010420 GGTAGAGTGGAATGGCTTTGAC 58.990 50.000 0.00 0.00 0.00 3.18
1413 1509 2.957402 AGAGTGGAATGGCTTTGACA 57.043 45.000 0.00 0.00 0.00 3.58
1414 1510 2.508526 AGAGTGGAATGGCTTTGACAC 58.491 47.619 8.57 8.57 0.00 3.67
1415 1511 1.541588 GAGTGGAATGGCTTTGACACC 59.458 52.381 11.48 0.00 0.00 4.16
1416 1512 0.240945 GTGGAATGGCTTTGACACCG 59.759 55.000 6.37 0.00 0.00 4.94
1417 1513 1.212751 GGAATGGCTTTGACACCGC 59.787 57.895 0.00 0.00 0.00 5.68
1418 1514 1.244019 GGAATGGCTTTGACACCGCT 61.244 55.000 0.00 0.00 0.00 5.52
1419 1515 1.448985 GAATGGCTTTGACACCGCTA 58.551 50.000 0.00 0.00 0.00 4.26
1420 1516 1.130561 GAATGGCTTTGACACCGCTAC 59.869 52.381 0.00 0.00 0.00 3.58
1421 1517 0.324943 ATGGCTTTGACACCGCTACT 59.675 50.000 0.00 0.00 0.00 2.57
1422 1518 0.602638 TGGCTTTGACACCGCTACTG 60.603 55.000 0.00 0.00 0.00 2.74
1423 1519 0.602905 GGCTTTGACACCGCTACTGT 60.603 55.000 0.00 0.00 0.00 3.55
1424 1520 1.337447 GGCTTTGACACCGCTACTGTA 60.337 52.381 0.00 0.00 0.00 2.74
1778 1893 9.722056 GTGCTAAATGGATACTTTTCAGTAATG 57.278 33.333 0.00 0.00 42.38 1.90
1779 1894 9.461312 TGCTAAATGGATACTTTTCAGTAATGT 57.539 29.630 0.00 0.00 42.38 2.71
1796 1911 6.035435 CAGTAATGTTCTGAGATTCGGTTCTG 59.965 42.308 0.00 0.00 35.20 3.02
1826 1961 3.305064 CCTTGGTTAATTTGGGTCACGTG 60.305 47.826 9.94 9.94 0.00 4.49
1831 1966 2.045561 AATTTGGGTCACGTGTCACA 57.954 45.000 13.83 13.83 0.00 3.58
1842 1977 1.499056 GTGTCACATCTTGGCAGCG 59.501 57.895 0.00 0.00 41.79 5.18
1851 1986 1.100463 TCTTGGCAGCGCAAACAGAA 61.100 50.000 11.47 0.00 0.00 3.02
1864 1999 5.519722 CGCAAACAGAATGGAACTTAAAGT 58.480 37.500 0.00 0.00 43.62 2.66
1874 2009 7.505585 AGAATGGAACTTAAAGTGTCCAAATCA 59.494 33.333 9.81 0.00 38.19 2.57
1933 2068 5.991328 TCGCTTTTATCATGGAAGTGATC 57.009 39.130 0.00 0.00 39.45 2.92
2148 2322 4.267536 TCTCACAGTATAGTTAGGCGTGT 58.732 43.478 0.00 0.00 0.00 4.49
2227 2401 9.094578 CATCCTGAGGTAATATCTCTTTTAGGA 57.905 37.037 9.05 9.05 35.56 2.94
2494 2668 7.450634 TGTGAGTACTTACCTAGTGTTCATCTT 59.549 37.037 14.62 0.00 37.73 2.40
2607 2781 5.049680 ACTTTGTACATTACTTGTTGCCTCG 60.050 40.000 0.00 0.00 39.87 4.63
2608 2782 2.739913 TGTACATTACTTGTTGCCTCGC 59.260 45.455 0.00 0.00 39.87 5.03
2610 2784 1.075542 CATTACTTGTTGCCTCGCGA 58.924 50.000 9.26 9.26 0.00 5.87
2993 3167 3.302344 GGCCAAACATGCCCGTGT 61.302 61.111 0.00 0.00 43.33 4.49
3411 3586 5.216622 AGGTAATGATGACCTGTTAGCCTA 58.783 41.667 0.00 0.00 45.90 3.93
3421 3596 5.070446 TGACCTGTTAGCCTATTACCTCATG 59.930 44.000 0.00 0.00 0.00 3.07
3457 3632 4.373156 ACTGAGCCAAACCATTCTTACT 57.627 40.909 0.00 0.00 0.00 2.24
3458 3633 5.499004 ACTGAGCCAAACCATTCTTACTA 57.501 39.130 0.00 0.00 0.00 1.82
3459 3634 5.491982 ACTGAGCCAAACCATTCTTACTAG 58.508 41.667 0.00 0.00 0.00 2.57
3460 3635 4.843728 TGAGCCAAACCATTCTTACTAGG 58.156 43.478 0.00 0.00 0.00 3.02
3486 3661 3.392947 TGTGGTTTGTCTCCAGGATGTAA 59.607 43.478 0.00 0.00 35.49 2.41
3696 3871 7.074237 AGTCAAGAGATATTATCATTTGGGGGT 59.926 37.037 14.79 2.43 0.00 4.95
3734 3909 9.327731 CTATTAAACTTATACTCCCTCCATCCT 57.672 37.037 0.00 0.00 0.00 3.24
4142 4328 6.041409 ACACTCTTTTTGTGATCAGAGAGAGA 59.959 38.462 24.17 15.81 38.65 3.10
4418 4605 8.897752 AGCATCTATTGTTTCTCAGGTATTTTC 58.102 33.333 0.00 0.00 0.00 2.29
4676 4863 1.809651 GCTGCCAGAGGATTAGACAGC 60.810 57.143 0.00 0.00 41.80 4.40
4677 4864 1.761784 CTGCCAGAGGATTAGACAGCT 59.238 52.381 0.00 0.00 0.00 4.24
4793 4980 0.181350 CCCTTTAGCTAGCCCCACAG 59.819 60.000 12.13 0.52 0.00 3.66
4794 4981 0.912486 CCTTTAGCTAGCCCCACAGT 59.088 55.000 12.13 0.00 0.00 3.55
5377 5564 1.056660 CCTGTAGTTGGTGGTGGAGT 58.943 55.000 0.00 0.00 0.00 3.85
6079 6268 5.010282 CAGCTTAATAACCCTTTGTCACCT 58.990 41.667 0.00 0.00 0.00 4.00
6131 6320 1.226802 CATGACTCCACGAGCCTCG 60.227 63.158 13.52 13.52 46.93 4.63
6197 6386 2.844451 GCTGGCTTTTGTGCACCGA 61.844 57.895 15.69 0.00 34.04 4.69
6484 6674 3.463944 CCGCCTGGGTAAATGTTAGTAG 58.536 50.000 0.00 0.00 0.00 2.57
6485 6675 3.118519 CCGCCTGGGTAAATGTTAGTAGT 60.119 47.826 0.00 0.00 0.00 2.73
6489 6679 5.395990 GCCTGGGTAAATGTTAGTAGTAGCA 60.396 44.000 0.00 0.00 0.00 3.49
6490 6680 6.281405 CCTGGGTAAATGTTAGTAGTAGCAG 58.719 44.000 0.52 0.00 0.00 4.24
6491 6681 6.127140 CCTGGGTAAATGTTAGTAGTAGCAGT 60.127 42.308 0.52 0.00 0.00 4.40
6492 6682 6.870769 TGGGTAAATGTTAGTAGTAGCAGTC 58.129 40.000 0.52 0.00 0.00 3.51
6493 6683 6.666546 TGGGTAAATGTTAGTAGTAGCAGTCT 59.333 38.462 0.52 0.00 0.00 3.24
6494 6684 6.979238 GGGTAAATGTTAGTAGTAGCAGTCTG 59.021 42.308 0.00 0.00 0.00 3.51
6495 6685 7.147949 GGGTAAATGTTAGTAGTAGCAGTCTGA 60.148 40.741 3.32 0.00 0.00 3.27
6496 6686 8.248945 GGTAAATGTTAGTAGTAGCAGTCTGAA 58.751 37.037 3.32 0.00 0.00 3.02
6497 6687 9.804758 GTAAATGTTAGTAGTAGCAGTCTGAAT 57.195 33.333 3.32 0.00 0.00 2.57
6589 6779 1.604378 CCACCTCACCACCCTGATC 59.396 63.158 0.00 0.00 0.00 2.92
6601 6791 1.077501 CCTGATCAACATGGGCGGT 60.078 57.895 0.00 0.00 0.00 5.68
6648 6838 3.128259 CGAGAGCTGCTTGCAACTA 57.872 52.632 2.53 0.00 45.94 2.24
6649 6839 1.432514 CGAGAGCTGCTTGCAACTAA 58.567 50.000 2.53 0.00 45.94 2.24
6711 6911 3.809279 TCATGTGGCATCGACATTACATC 59.191 43.478 0.00 0.00 31.46 3.06
6719 6919 5.238432 GGCATCGACATTACATCCATTACAA 59.762 40.000 0.00 0.00 0.00 2.41
6728 6928 8.264347 ACATTACATCCATTACAATTTTTCCCC 58.736 33.333 0.00 0.00 0.00 4.81
6732 6932 6.272090 ACATCCATTACAATTTTTCCCCTGTT 59.728 34.615 0.00 0.00 0.00 3.16
6779 6979 1.892209 ATCGCCTGAAAACCGAAACT 58.108 45.000 0.00 0.00 34.42 2.66
6788 6988 1.388837 AAACCGAAACTGGGCGCTTT 61.389 50.000 7.64 0.00 0.00 3.51
6793 6993 0.110192 GAAACTGGGCGCTTTCGAAG 60.110 55.000 7.64 0.00 38.10 3.79
6795 6995 0.534203 AACTGGGCGCTTTCGAAGAA 60.534 50.000 7.64 0.00 45.90 2.52
6808 7008 3.580658 GAAGAATTTCGCCGGTTCG 57.419 52.632 1.90 0.00 0.00 3.95
6840 7040 2.413310 CCCGCTGTTAGGGTTTGTAT 57.587 50.000 0.00 0.00 43.89 2.29
6841 7041 3.547054 CCCGCTGTTAGGGTTTGTATA 57.453 47.619 0.00 0.00 43.89 1.47
6952 7152 0.750249 TGAAGACGGCTGTTGTCTGA 59.250 50.000 0.00 0.00 45.62 3.27
6988 7188 3.837355 AGGGCTTTTCATGAAACTGTCT 58.163 40.909 20.35 12.56 0.00 3.41
6992 7192 4.202050 GGCTTTTCATGAAACTGTCTGTGT 60.202 41.667 20.35 0.00 0.00 3.72
7045 7245 3.373130 GGTTTAAGCATTACGACCCACTC 59.627 47.826 0.00 0.00 33.27 3.51
7061 7261 3.369892 CCCACTCAAGTATAGCAGCAAGT 60.370 47.826 0.00 0.00 0.00 3.16
7251 7460 3.726328 TGTATCATGGGAATGGGATGGAA 59.274 43.478 0.00 0.00 0.00 3.53
7347 7566 0.337428 GGTGGTAGGAGGTAGGTGGA 59.663 60.000 0.00 0.00 0.00 4.02
7348 7567 1.482954 GTGGTAGGAGGTAGGTGGAC 58.517 60.000 0.00 0.00 0.00 4.02
7349 7568 1.086565 TGGTAGGAGGTAGGTGGACA 58.913 55.000 0.00 0.00 0.00 4.02
7350 7569 1.433985 TGGTAGGAGGTAGGTGGACAA 59.566 52.381 0.00 0.00 0.00 3.18
7351 7570 2.158127 TGGTAGGAGGTAGGTGGACAAA 60.158 50.000 0.00 0.00 0.00 2.83
7352 7571 2.908351 GGTAGGAGGTAGGTGGACAAAA 59.092 50.000 0.00 0.00 0.00 2.44
7353 7572 3.522343 GGTAGGAGGTAGGTGGACAAAAT 59.478 47.826 0.00 0.00 0.00 1.82
7354 7573 4.383880 GGTAGGAGGTAGGTGGACAAAATC 60.384 50.000 0.00 0.00 0.00 2.17
7355 7574 3.256704 AGGAGGTAGGTGGACAAAATCA 58.743 45.455 0.00 0.00 0.00 2.57
7356 7575 3.009143 AGGAGGTAGGTGGACAAAATCAC 59.991 47.826 0.00 0.00 0.00 3.06
7357 7576 3.009143 GGAGGTAGGTGGACAAAATCACT 59.991 47.826 0.00 0.00 34.57 3.41
7358 7577 4.003648 GAGGTAGGTGGACAAAATCACTG 58.996 47.826 0.00 0.00 34.57 3.66
7359 7578 3.394606 AGGTAGGTGGACAAAATCACTGT 59.605 43.478 0.00 0.00 34.57 3.55
7360 7579 4.141251 AGGTAGGTGGACAAAATCACTGTT 60.141 41.667 0.00 0.00 34.57 3.16
7361 7580 4.583073 GGTAGGTGGACAAAATCACTGTTT 59.417 41.667 0.00 0.00 34.57 2.83
7362 7581 5.068591 GGTAGGTGGACAAAATCACTGTTTT 59.931 40.000 0.00 0.00 34.57 2.43
7364 7583 4.709397 AGGTGGACAAAATCACTGTTTTGA 59.291 37.500 16.31 0.00 46.78 2.69
7365 7584 4.803613 GGTGGACAAAATCACTGTTTTGAC 59.196 41.667 16.31 11.08 46.78 3.18
7368 7587 5.262588 GACAAAATCACTGTTTTGACCCT 57.737 39.130 16.31 0.00 46.78 4.34
7369 7588 5.660460 GACAAAATCACTGTTTTGACCCTT 58.340 37.500 16.31 0.00 46.78 3.95
7370 7589 6.048732 ACAAAATCACTGTTTTGACCCTTT 57.951 33.333 16.31 0.00 46.78 3.11
7371 7590 5.874261 ACAAAATCACTGTTTTGACCCTTTG 59.126 36.000 16.31 4.36 46.78 2.77
7372 7591 5.675684 AAATCACTGTTTTGACCCTTTGT 57.324 34.783 0.00 0.00 0.00 2.83
7373 7592 4.654091 ATCACTGTTTTGACCCTTTGTG 57.346 40.909 0.00 0.00 0.00 3.33
7374 7593 2.165437 TCACTGTTTTGACCCTTTGTGC 59.835 45.455 0.00 0.00 0.00 4.57
7375 7594 2.166254 CACTGTTTTGACCCTTTGTGCT 59.834 45.455 0.00 0.00 0.00 4.40
7376 7595 3.380004 CACTGTTTTGACCCTTTGTGCTA 59.620 43.478 0.00 0.00 0.00 3.49
7377 7596 4.020543 ACTGTTTTGACCCTTTGTGCTAA 58.979 39.130 0.00 0.00 0.00 3.09
7378 7597 4.142249 ACTGTTTTGACCCTTTGTGCTAAC 60.142 41.667 0.00 0.00 0.00 2.34
7379 7598 3.764434 TGTTTTGACCCTTTGTGCTAACA 59.236 39.130 0.00 0.00 0.00 2.41
7380 7599 4.220821 TGTTTTGACCCTTTGTGCTAACAA 59.779 37.500 0.00 0.00 44.59 2.83
7391 7610 5.461032 TTGTGCTAACAAATTCCCGAATT 57.539 34.783 0.00 0.00 43.32 2.17
7392 7611 4.804108 TGTGCTAACAAATTCCCGAATTG 58.196 39.130 3.51 1.93 40.57 2.32
7393 7612 4.520874 TGTGCTAACAAATTCCCGAATTGA 59.479 37.500 3.51 0.00 40.57 2.57
7394 7613 4.857037 GTGCTAACAAATTCCCGAATTGAC 59.143 41.667 3.51 0.00 40.57 3.18
7395 7614 4.082463 TGCTAACAAATTCCCGAATTGACC 60.082 41.667 3.51 0.00 40.57 4.02
7396 7615 4.157840 GCTAACAAATTCCCGAATTGACCT 59.842 41.667 3.51 0.00 40.57 3.85
7397 7616 4.783764 AACAAATTCCCGAATTGACCTC 57.216 40.909 3.51 0.00 40.57 3.85
7398 7617 2.747446 ACAAATTCCCGAATTGACCTCG 59.253 45.455 3.51 0.00 40.57 4.63
7404 7623 2.539003 CGAATTGACCTCGGTTGCA 58.461 52.632 0.00 0.00 32.62 4.08
7405 7624 0.871722 CGAATTGACCTCGGTTGCAA 59.128 50.000 0.00 0.00 32.62 4.08
7406 7625 1.265635 CGAATTGACCTCGGTTGCAAA 59.734 47.619 0.00 0.00 32.62 3.68
7407 7626 2.287308 CGAATTGACCTCGGTTGCAAAA 60.287 45.455 0.00 0.00 32.62 2.44
7408 7627 3.712187 GAATTGACCTCGGTTGCAAAAA 58.288 40.909 0.00 0.00 0.00 1.94
7431 7650 9.987272 AAAAATTTCCTAATCTGACCTCTTTTG 57.013 29.630 0.00 0.00 0.00 2.44
7432 7651 7.709149 AATTTCCTAATCTGACCTCTTTTGG 57.291 36.000 0.00 0.00 0.00 3.28
7433 7652 5.843019 TTCCTAATCTGACCTCTTTTGGT 57.157 39.130 0.00 0.00 44.10 3.67
7434 7653 5.165961 TCCTAATCTGACCTCTTTTGGTG 57.834 43.478 0.00 0.00 41.00 4.17
7435 7654 4.844085 TCCTAATCTGACCTCTTTTGGTGA 59.156 41.667 0.00 0.00 41.00 4.02
7436 7655 4.938226 CCTAATCTGACCTCTTTTGGTGAC 59.062 45.833 0.00 0.00 41.00 3.67
7437 7656 2.526304 TCTGACCTCTTTTGGTGACG 57.474 50.000 0.00 0.00 41.00 4.35
7438 7657 0.868406 CTGACCTCTTTTGGTGACGC 59.132 55.000 0.00 0.00 41.00 5.19
7439 7658 0.534203 TGACCTCTTTTGGTGACGCC 60.534 55.000 0.00 0.00 41.00 5.68
7447 7666 2.033448 TGGTGACGCCAACATCCC 59.967 61.111 4.92 0.00 45.94 3.85
7448 7667 2.351276 GGTGACGCCAACATCCCT 59.649 61.111 0.00 0.00 37.17 4.20
7449 7668 2.040544 GGTGACGCCAACATCCCTG 61.041 63.158 0.00 0.00 37.17 4.45
7450 7669 1.003839 GTGACGCCAACATCCCTGA 60.004 57.895 0.00 0.00 0.00 3.86
7451 7670 1.003839 TGACGCCAACATCCCTGAC 60.004 57.895 0.00 0.00 0.00 3.51
7452 7671 2.047274 ACGCCAACATCCCTGACG 60.047 61.111 0.00 0.00 0.00 4.35
7453 7672 2.047274 CGCCAACATCCCTGACGT 60.047 61.111 0.00 0.00 0.00 4.34
7454 7673 2.100631 CGCCAACATCCCTGACGTC 61.101 63.158 9.11 9.11 0.00 4.34
7455 7674 1.296715 GCCAACATCCCTGACGTCT 59.703 57.895 17.92 0.00 0.00 4.18
7456 7675 1.021390 GCCAACATCCCTGACGTCTG 61.021 60.000 17.92 16.32 0.00 3.51
7457 7676 0.391661 CCAACATCCCTGACGTCTGG 60.392 60.000 29.12 29.12 35.06 3.86
7462 7681 2.358737 CCCTGACGTCTGGGTTGC 60.359 66.667 38.88 6.03 46.49 4.17
7463 7682 2.425592 CCTGACGTCTGGGTTGCA 59.574 61.111 28.59 1.42 0.00 4.08
7464 7683 1.003355 CCTGACGTCTGGGTTGCAT 60.003 57.895 28.59 0.00 0.00 3.96
7465 7684 0.606401 CCTGACGTCTGGGTTGCATT 60.606 55.000 28.59 0.00 0.00 3.56
7466 7685 0.518636 CTGACGTCTGGGTTGCATTG 59.481 55.000 17.92 0.00 0.00 2.82
7467 7686 0.888736 TGACGTCTGGGTTGCATTGG 60.889 55.000 17.92 0.00 0.00 3.16
7468 7687 0.605319 GACGTCTGGGTTGCATTGGA 60.605 55.000 8.70 0.00 0.00 3.53
7469 7688 0.606401 ACGTCTGGGTTGCATTGGAG 60.606 55.000 0.00 0.00 0.00 3.86
7470 7689 0.321564 CGTCTGGGTTGCATTGGAGA 60.322 55.000 0.00 0.00 0.00 3.71
7471 7690 1.168714 GTCTGGGTTGCATTGGAGAC 58.831 55.000 0.00 0.00 0.00 3.36
7472 7691 0.321564 TCTGGGTTGCATTGGAGACG 60.322 55.000 0.00 0.00 0.00 4.18
7473 7692 1.926511 CTGGGTTGCATTGGAGACGC 61.927 60.000 0.00 0.00 0.00 5.19
7474 7693 2.700773 GGGTTGCATTGGAGACGCC 61.701 63.158 0.00 0.00 37.10 5.68
7494 7713 4.083862 GGACCCTGGCGTCTGGTC 62.084 72.222 17.61 17.61 46.31 4.02
7495 7714 4.083862 GACCCTGGCGTCTGGTCC 62.084 72.222 15.71 2.65 42.21 4.46
7498 7717 4.087892 CCTGGCGTCTGGTCCCTG 62.088 72.222 4.52 0.00 0.00 4.45
7499 7718 4.087892 CTGGCGTCTGGTCCCTGG 62.088 72.222 0.00 0.00 0.00 4.45
7524 7743 4.651008 GACCCGCGACCACGTTGA 62.651 66.667 8.23 0.00 41.98 3.18
7525 7744 4.955774 ACCCGCGACCACGTTGAC 62.956 66.667 8.23 0.00 41.98 3.18
7530 7749 4.657824 CGACCACGTTGACCGGCT 62.658 66.667 0.00 0.00 42.24 5.52
7531 7750 3.041940 GACCACGTTGACCGGCTG 61.042 66.667 0.00 0.00 42.24 4.85
7532 7751 3.509137 GACCACGTTGACCGGCTGA 62.509 63.158 0.00 0.00 42.24 4.26
7533 7752 3.041940 CCACGTTGACCGGCTGAC 61.042 66.667 0.00 0.00 42.24 3.51
7534 7753 3.403057 CACGTTGACCGGCTGACG 61.403 66.667 18.72 18.72 42.24 4.35
7535 7754 3.908081 ACGTTGACCGGCTGACGT 61.908 61.111 19.84 19.84 43.12 4.34
7536 7755 3.403057 CGTTGACCGGCTGACGTG 61.403 66.667 0.00 0.00 42.24 4.49
7537 7756 3.041940 GTTGACCGGCTGACGTGG 61.042 66.667 0.00 0.00 42.24 4.94
7538 7757 4.980805 TTGACCGGCTGACGTGGC 62.981 66.667 0.00 0.00 42.24 5.01
7540 7759 4.980805 GACCGGCTGACGTGGCAA 62.981 66.667 0.00 0.00 42.24 4.52
7541 7760 4.555709 ACCGGCTGACGTGGCAAA 62.556 61.111 0.00 0.00 42.24 3.68
7542 7761 3.726517 CCGGCTGACGTGGCAAAG 61.727 66.667 0.71 0.00 42.24 2.77
7543 7762 3.726517 CGGCTGACGTGGCAAAGG 61.727 66.667 11.40 0.00 37.93 3.11
7544 7763 3.365265 GGCTGACGTGGCAAAGGG 61.365 66.667 11.40 0.00 0.00 3.95
7545 7764 3.365265 GCTGACGTGGCAAAGGGG 61.365 66.667 0.00 0.00 0.00 4.79
7546 7765 3.365265 CTGACGTGGCAAAGGGGC 61.365 66.667 0.00 0.00 43.73 5.80
7563 7782 3.322466 CCAGACGCCAGGGTCCTT 61.322 66.667 10.87 0.00 37.66 3.36
7564 7783 2.046892 CAGACGCCAGGGTCCTTG 60.047 66.667 10.87 0.00 37.66 3.61
7565 7784 3.322466 AGACGCCAGGGTCCTTGG 61.322 66.667 15.83 15.83 37.66 3.61
7569 7788 4.660938 GCCAGGGTCCTTGGCGTT 62.661 66.667 27.66 0.00 39.06 4.84
7570 7789 2.672996 CCAGGGTCCTTGGCGTTG 60.673 66.667 7.17 0.00 0.00 4.10
7571 7790 2.672996 CAGGGTCCTTGGCGTTGG 60.673 66.667 0.00 0.00 0.00 3.77
7572 7791 3.175710 AGGGTCCTTGGCGTTGGT 61.176 61.111 0.00 0.00 0.00 3.67
7573 7792 2.671963 GGGTCCTTGGCGTTGGTC 60.672 66.667 0.00 0.00 0.00 4.02
7574 7793 2.671963 GGTCCTTGGCGTTGGTCC 60.672 66.667 0.00 0.00 0.00 4.46
7575 7794 2.430367 GTCCTTGGCGTTGGTCCT 59.570 61.111 0.00 0.00 0.00 3.85
7576 7795 1.966451 GTCCTTGGCGTTGGTCCTG 60.966 63.158 0.00 0.00 0.00 3.86
7577 7796 2.672996 CCTTGGCGTTGGTCCTGG 60.673 66.667 0.00 0.00 0.00 4.45
7578 7797 2.113139 CTTGGCGTTGGTCCTGGT 59.887 61.111 0.00 0.00 0.00 4.00
7579 7798 1.373435 CTTGGCGTTGGTCCTGGTA 59.627 57.895 0.00 0.00 0.00 3.25
7580 7799 0.250553 CTTGGCGTTGGTCCTGGTAA 60.251 55.000 0.00 0.00 0.00 2.85
7581 7800 0.250553 TTGGCGTTGGTCCTGGTAAG 60.251 55.000 0.00 0.00 0.00 2.34
7582 7801 1.376812 GGCGTTGGTCCTGGTAAGG 60.377 63.158 0.00 0.00 46.06 2.69
7583 7802 1.376812 GCGTTGGTCCTGGTAAGGG 60.377 63.158 0.00 0.00 44.62 3.95
7584 7803 2.063774 CGTTGGTCCTGGTAAGGGT 58.936 57.895 0.00 0.00 44.62 4.34
7585 7804 0.036671 CGTTGGTCCTGGTAAGGGTC 60.037 60.000 0.00 0.00 44.62 4.46
7586 7805 0.327259 GTTGGTCCTGGTAAGGGTCC 59.673 60.000 0.00 0.00 44.62 4.46
7587 7806 0.104356 TTGGTCCTGGTAAGGGTCCA 60.104 55.000 0.00 0.00 44.62 4.02
7592 7811 3.384348 TGGTAAGGGTCCAGACGC 58.616 61.111 6.74 6.74 43.63 5.19
7593 7812 2.288025 TGGTAAGGGTCCAGACGCC 61.288 63.158 10.87 4.53 44.27 5.68
7594 7813 2.288025 GGTAAGGGTCCAGACGCCA 61.288 63.158 10.87 0.00 44.27 5.69
7595 7814 1.218316 GTAAGGGTCCAGACGCCAG 59.782 63.158 10.87 0.00 44.27 4.85
7596 7815 1.987855 TAAGGGTCCAGACGCCAGG 60.988 63.158 10.87 0.00 44.27 4.45
7599 7818 4.083862 GGTCCAGACGCCAGGGTC 62.084 72.222 6.74 6.74 37.19 4.46
7600 7819 4.083862 GTCCAGACGCCAGGGTCC 62.084 72.222 10.87 0.00 37.66 4.46
7601 7820 4.316823 TCCAGACGCCAGGGTCCT 62.317 66.667 10.87 0.00 37.66 3.85
7602 7821 3.322466 CCAGACGCCAGGGTCCTT 61.322 66.667 10.87 0.00 37.66 3.36
7603 7822 2.046892 CAGACGCCAGGGTCCTTG 60.047 66.667 10.87 0.00 37.66 3.61
7604 7823 3.322466 AGACGCCAGGGTCCTTGG 61.322 66.667 15.83 15.83 37.66 3.61
7608 7827 4.660938 GCCAGGGTCCTTGGCGTT 62.661 66.667 27.66 0.00 39.06 4.84
7609 7828 2.115266 CCAGGGTCCTTGGCGTTT 59.885 61.111 7.17 0.00 0.00 3.60
7610 7829 2.268076 CCAGGGTCCTTGGCGTTTG 61.268 63.158 7.17 0.00 0.00 2.93
7611 7830 2.115266 AGGGTCCTTGGCGTTTGG 59.885 61.111 0.00 0.00 0.00 3.28
7612 7831 3.680786 GGGTCCTTGGCGTTTGGC 61.681 66.667 0.00 0.00 42.51 4.52
7621 7840 3.274067 GCGTTTGGCCCTGGTAAG 58.726 61.111 0.00 0.00 34.80 2.34
7622 7841 2.340328 GCGTTTGGCCCTGGTAAGG 61.340 63.158 0.00 0.00 44.06 2.69
7635 7854 5.888982 CCTGGTAAGGGACAGTAATACAT 57.111 43.478 0.00 0.00 40.27 2.29
7636 7855 5.611374 CCTGGTAAGGGACAGTAATACATG 58.389 45.833 0.00 0.00 40.27 3.21
7637 7856 5.130477 CCTGGTAAGGGACAGTAATACATGT 59.870 44.000 2.69 2.69 40.27 3.21
7638 7857 6.352737 CCTGGTAAGGGACAGTAATACATGTT 60.353 42.308 2.30 0.00 40.27 2.71
7639 7858 7.023171 TGGTAAGGGACAGTAATACATGTTT 57.977 36.000 2.30 0.95 0.00 2.83
7640 7859 6.882140 TGGTAAGGGACAGTAATACATGTTTG 59.118 38.462 2.30 0.00 0.00 2.93
7641 7860 6.882678 GGTAAGGGACAGTAATACATGTTTGT 59.117 38.462 2.30 1.50 39.98 2.83
7642 7861 6.817765 AAGGGACAGTAATACATGTTTGTG 57.182 37.500 2.30 4.04 36.53 3.33
7643 7862 5.876357 AGGGACAGTAATACATGTTTGTGT 58.124 37.500 2.30 6.92 36.53 3.72
7644 7863 7.011499 AGGGACAGTAATACATGTTTGTGTA 57.989 36.000 2.30 0.00 38.79 2.90
7645 7864 7.103641 AGGGACAGTAATACATGTTTGTGTAG 58.896 38.462 2.30 0.00 37.93 2.74
7646 7865 6.877322 GGGACAGTAATACATGTTTGTGTAGT 59.123 38.462 2.30 0.00 37.93 2.73
7647 7866 7.389607 GGGACAGTAATACATGTTTGTGTAGTT 59.610 37.037 2.30 0.00 37.93 2.24
7648 7867 9.426837 GGACAGTAATACATGTTTGTGTAGTTA 57.573 33.333 2.30 0.00 37.93 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.764771 GGCATGGCCCCAGCAGAA 62.765 66.667 8.35 0.00 44.06 3.02
128 131 1.357761 GAAAGGGAATGTTGGAGGGGA 59.642 52.381 0.00 0.00 0.00 4.81
146 149 1.048724 CATCGGGGGTGGAGCTAGAA 61.049 60.000 0.00 0.00 0.00 2.10
478 486 6.924111 TGAATGGAAACCTTTTTCTCTATGC 58.076 36.000 0.00 0.00 40.98 3.14
672 685 7.329717 CCCTCTGTAATAATGATCTAAACGCTC 59.670 40.741 0.00 0.00 0.00 5.03
691 704 5.513233 TCCGTAAACTAATACTCCCTCTGT 58.487 41.667 0.00 0.00 0.00 3.41
692 705 5.009811 CCTCCGTAAACTAATACTCCCTCTG 59.990 48.000 0.00 0.00 0.00 3.35
693 706 5.139001 CCTCCGTAAACTAATACTCCCTCT 58.861 45.833 0.00 0.00 0.00 3.69
694 707 4.892345 ACCTCCGTAAACTAATACTCCCTC 59.108 45.833 0.00 0.00 0.00 4.30
695 708 4.876580 ACCTCCGTAAACTAATACTCCCT 58.123 43.478 0.00 0.00 0.00 4.20
696 709 5.830457 ACTACCTCCGTAAACTAATACTCCC 59.170 44.000 0.00 0.00 0.00 4.30
697 710 6.951062 ACTACCTCCGTAAACTAATACTCC 57.049 41.667 0.00 0.00 0.00 3.85
711 762 4.377897 GTCCATCCAAATTACTACCTCCG 58.622 47.826 0.00 0.00 0.00 4.63
717 768 6.377146 GCTTTTCAGGTCCATCCAAATTACTA 59.623 38.462 0.00 0.00 39.02 1.82
804 858 3.181459 TGTTCGGTCCATGTTCAAAGAGA 60.181 43.478 0.00 0.00 0.00 3.10
805 859 3.138304 TGTTCGGTCCATGTTCAAAGAG 58.862 45.455 0.00 0.00 0.00 2.85
830 912 5.479375 ACAGAGTCCGTCACTAATCCTAAAA 59.521 40.000 0.00 0.00 34.41 1.52
849 931 6.072673 GGGAAAGGTGTGTATGTAAAACAGAG 60.073 42.308 0.00 0.00 0.00 3.35
850 932 5.766174 GGGAAAGGTGTGTATGTAAAACAGA 59.234 40.000 0.00 0.00 0.00 3.41
936 1018 3.240134 TTCTCGCCTCCACCACAGC 62.240 63.158 0.00 0.00 0.00 4.40
937 1019 1.079543 CTTCTCGCCTCCACCACAG 60.080 63.158 0.00 0.00 0.00 3.66
938 1020 1.118965 TTCTTCTCGCCTCCACCACA 61.119 55.000 0.00 0.00 0.00 4.17
939 1021 0.390472 CTTCTTCTCGCCTCCACCAC 60.390 60.000 0.00 0.00 0.00 4.16
949 1034 2.682856 CCTCTCCTGAGTCTTCTTCTCG 59.317 54.545 0.00 0.00 38.61 4.04
972 1057 1.363885 CTGCGGCGTTAAACCCCTAC 61.364 60.000 9.37 0.00 0.00 3.18
973 1058 1.078988 CTGCGGCGTTAAACCCCTA 60.079 57.895 9.37 0.00 0.00 3.53
1052 1137 3.288964 ACTACTAGTGGGTTCGATCTGG 58.711 50.000 11.30 0.00 0.00 3.86
1069 1154 3.445857 GTCGGCAGTGATTAGGAACTAC 58.554 50.000 0.00 0.00 42.67 2.73
1070 1155 2.098607 CGTCGGCAGTGATTAGGAACTA 59.901 50.000 0.00 0.00 41.75 2.24
1071 1156 1.135083 CGTCGGCAGTGATTAGGAACT 60.135 52.381 0.00 0.00 46.37 3.01
1072 1157 1.135199 TCGTCGGCAGTGATTAGGAAC 60.135 52.381 0.00 0.00 0.00 3.62
1075 1160 0.738975 TCTCGTCGGCAGTGATTAGG 59.261 55.000 0.00 0.00 0.00 2.69
1084 1169 1.213013 GAAGAGCTTCTCGTCGGCA 59.787 57.895 3.06 0.00 36.69 5.69
1092 1177 0.326143 GGGAGAGGGGAAGAGCTTCT 60.326 60.000 9.82 0.00 39.45 2.85
1128 1213 6.412072 GTCGCGGAAAATCTTAAGAATGATTG 59.588 38.462 9.71 0.33 0.00 2.67
1157 1242 1.660607 GAGCGAATCATGAAACGAGCA 59.339 47.619 22.59 0.00 0.00 4.26
1277 1367 1.157870 AAACGCTGGTGACAAGTCGG 61.158 55.000 8.28 0.00 42.06 4.79
1366 1462 6.881602 CCTTAAGCTACTCCCAATCCAATATC 59.118 42.308 0.00 0.00 0.00 1.63
1370 1466 3.202151 CCCTTAAGCTACTCCCAATCCAA 59.798 47.826 0.00 0.00 0.00 3.53
1380 1476 4.604784 TCCACTCTACCCTTAAGCTACT 57.395 45.455 0.00 0.00 0.00 2.57
1397 1493 0.240945 CGGTGTCAAAGCCATTCCAC 59.759 55.000 0.00 0.00 0.00 4.02
1404 1500 0.602905 ACAGTAGCGGTGTCAAAGCC 60.603 55.000 0.00 0.00 0.00 4.35
1766 1881 7.118390 ACCGAATCTCAGAACATTACTGAAAAG 59.882 37.037 0.00 0.00 42.58 2.27
1767 1882 6.934645 ACCGAATCTCAGAACATTACTGAAAA 59.065 34.615 0.00 0.00 42.58 2.29
1778 1893 4.748892 TCATCAGAACCGAATCTCAGAAC 58.251 43.478 0.00 0.00 0.00 3.01
1779 1894 4.142071 CCTCATCAGAACCGAATCTCAGAA 60.142 45.833 0.00 0.00 0.00 3.02
1780 1895 3.382865 CCTCATCAGAACCGAATCTCAGA 59.617 47.826 0.00 0.00 0.00 3.27
1796 1911 4.402474 CCCAAATTAACCAAGGACCTCATC 59.598 45.833 0.00 0.00 0.00 2.92
1826 1961 1.855213 TTGCGCTGCCAAGATGTGAC 61.855 55.000 9.73 0.00 0.00 3.67
1831 1966 0.890542 TCTGTTTGCGCTGCCAAGAT 60.891 50.000 9.73 0.00 0.00 2.40
1842 1977 6.273071 ACACTTTAAGTTCCATTCTGTTTGC 58.727 36.000 0.00 0.00 0.00 3.68
1851 1986 7.605449 CATGATTTGGACACTTTAAGTTCCAT 58.395 34.615 20.86 12.49 36.24 3.41
1874 2009 3.496870 GCGATTAGAATCCAGGGAACCAT 60.497 47.826 0.00 0.00 41.32 3.55
2148 2322 0.618107 TCCCCCGGTAGTGTATGCAA 60.618 55.000 0.00 0.00 0.00 4.08
2227 2401 1.311859 CCACACAACTGCACACTGAT 58.688 50.000 0.00 0.00 0.00 2.90
2381 2555 2.331194 CAAGTGCAGCAATAAACCAGC 58.669 47.619 0.00 0.00 0.00 4.85
2494 2668 3.643237 ACTAGCTATCACCTACCTTGCA 58.357 45.455 0.00 0.00 0.00 4.08
2798 2972 3.189606 TCCCAACCTTCCACATGTAGAT 58.810 45.455 0.00 0.00 0.00 1.98
2801 2975 4.044065 AGAAATCCCAACCTTCCACATGTA 59.956 41.667 0.00 0.00 0.00 2.29
3411 3586 6.506538 AAAGGTATGAGAGCATGAGGTAAT 57.493 37.500 0.00 0.00 35.94 1.89
3421 3596 4.123506 GGCTCAGTTAAAGGTATGAGAGC 58.876 47.826 5.28 0.00 44.69 4.09
3457 3632 2.983192 TGGAGACAAACCACATTCCCTA 59.017 45.455 0.00 0.00 37.44 3.53
3458 3633 1.780309 TGGAGACAAACCACATTCCCT 59.220 47.619 0.00 0.00 37.44 4.20
3459 3634 2.162681 CTGGAGACAAACCACATTCCC 58.837 52.381 0.00 0.00 42.06 3.97
3460 3635 2.162681 CCTGGAGACAAACCACATTCC 58.837 52.381 0.00 0.00 42.06 3.01
3486 3661 1.707427 AGCAGTCTGACCTTCCCAAAT 59.293 47.619 3.32 0.00 0.00 2.32
4073 4259 1.476471 CCAAAATGCAACCTTGGCCAA 60.476 47.619 19.25 19.25 33.65 4.52
4142 4328 5.629133 TCTGTGACCAGCAACTAAGAAAGTT 60.629 40.000 0.00 0.00 42.22 2.66
4418 4605 5.479716 AGAAAACAACAGAAGTACAACCG 57.520 39.130 0.00 0.00 0.00 4.44
4575 4762 1.337447 CCAGCAATTTCCCTGTGCTTG 60.337 52.381 0.00 0.00 46.25 4.01
4793 4980 6.512297 ACCCAAACAATTGTACAATCTGAAC 58.488 36.000 21.02 0.00 34.60 3.18
4794 4981 6.723298 ACCCAAACAATTGTACAATCTGAA 57.277 33.333 21.02 0.00 34.60 3.02
5377 5564 6.937465 TGAGTAATGTACAACACTGCCATTTA 59.063 34.615 15.29 0.00 32.57 1.40
5423 5610 2.484889 ACGACCAAAGAAGAACTCTGC 58.515 47.619 0.00 0.00 33.37 4.26
5581 5768 1.745653 GCTGAAAATCTACCACAGGGC 59.254 52.381 0.00 0.00 37.90 5.19
5657 5844 6.129300 CGTAAGTCCAAAATTACCGCTTTTTG 60.129 38.462 0.00 0.00 40.72 2.44
5695 5884 6.314896 CAGTTCTTCCTGTACAATTGAGGATC 59.685 42.308 13.59 5.74 35.77 3.36
6079 6268 2.827322 CAAAGAATGACCTGGATGCCAA 59.173 45.455 0.00 0.00 30.80 4.52
6131 6320 0.536460 TCCAAGGGTTTGTCGAAGGC 60.536 55.000 0.00 0.00 32.21 4.35
6429 6618 0.396139 ATTAGGGCGGTACCTCGTGA 60.396 55.000 10.90 1.36 42.09 4.35
6484 6674 5.814188 TGTCATCATCAATTCAGACTGCTAC 59.186 40.000 0.00 0.00 0.00 3.58
6485 6675 5.814188 GTGTCATCATCAATTCAGACTGCTA 59.186 40.000 0.00 0.00 0.00 3.49
6489 6679 4.226846 AGGGTGTCATCATCAATTCAGACT 59.773 41.667 0.00 0.00 0.00 3.24
6490 6680 4.334759 CAGGGTGTCATCATCAATTCAGAC 59.665 45.833 0.00 0.00 0.00 3.51
6491 6681 4.520179 CAGGGTGTCATCATCAATTCAGA 58.480 43.478 0.00 0.00 0.00 3.27
6492 6682 3.630769 CCAGGGTGTCATCATCAATTCAG 59.369 47.826 0.00 0.00 0.00 3.02
6493 6683 3.623703 CCAGGGTGTCATCATCAATTCA 58.376 45.455 0.00 0.00 0.00 2.57
6494 6684 2.954318 CCCAGGGTGTCATCATCAATTC 59.046 50.000 0.00 0.00 0.00 2.17
6495 6685 2.358510 CCCCAGGGTGTCATCATCAATT 60.359 50.000 4.22 0.00 0.00 2.32
6496 6686 1.216175 CCCCAGGGTGTCATCATCAAT 59.784 52.381 4.22 0.00 0.00 2.57
6497 6687 0.625316 CCCCAGGGTGTCATCATCAA 59.375 55.000 4.22 0.00 0.00 2.57
6498 6688 2.310251 CCCCAGGGTGTCATCATCA 58.690 57.895 4.22 0.00 0.00 3.07
6522 6712 2.594303 CCTGCAACCAACGGAGCA 60.594 61.111 0.00 5.18 36.35 4.26
6589 6779 3.372730 CCACCACCGCCCATGTTG 61.373 66.667 0.00 0.00 0.00 3.33
6612 6802 0.461870 CGCTTCATGGGATTCCGTCA 60.462 55.000 0.00 0.00 35.24 4.35
6648 6838 9.412460 GATATCATCTATCTGTGAGATCCTCTT 57.588 37.037 0.00 0.00 37.20 2.85
6649 6839 8.985315 GATATCATCTATCTGTGAGATCCTCT 57.015 38.462 0.00 0.00 37.20 3.69
6659 6849 6.071108 CGGTGGAAAGGATATCATCTATCTGT 60.071 42.308 4.83 0.00 0.00 3.41
6711 6911 5.863965 ACAACAGGGGAAAAATTGTAATGG 58.136 37.500 0.00 0.00 31.88 3.16
6719 6919 3.641436 GACAGGAACAACAGGGGAAAAAT 59.359 43.478 0.00 0.00 0.00 1.82
6728 6928 5.991606 TCTACATCTTTGACAGGAACAACAG 59.008 40.000 0.00 0.00 0.00 3.16
6732 6932 6.368791 CGATTTCTACATCTTTGACAGGAACA 59.631 38.462 0.00 0.00 0.00 3.18
6779 6979 1.199097 GAAATTCTTCGAAAGCGCCCA 59.801 47.619 2.29 0.00 37.46 5.36
6952 7152 2.893424 AGCCCTTTCACCATTGATTGT 58.107 42.857 0.00 0.00 0.00 2.71
7045 7245 3.127548 CCAACCACTTGCTGCTATACTTG 59.872 47.826 0.00 0.00 0.00 3.16
7098 7298 0.316204 AGCACAAGCCTGATTGCAAC 59.684 50.000 0.00 0.00 43.56 4.17
7227 7436 4.357702 TCCATCCCATTCCCATGATACATT 59.642 41.667 0.00 0.00 31.07 2.71
7282 7501 4.323477 TTTCCCTCGCCCACCACG 62.323 66.667 0.00 0.00 0.00 4.94
7283 7502 2.671963 GTTTCCCTCGCCCACCAC 60.672 66.667 0.00 0.00 0.00 4.16
7284 7503 3.172106 TGTTTCCCTCGCCCACCA 61.172 61.111 0.00 0.00 0.00 4.17
7285 7504 2.359975 CTGTTTCCCTCGCCCACC 60.360 66.667 0.00 0.00 0.00 4.61
7286 7505 3.056328 GCTGTTTCCCTCGCCCAC 61.056 66.667 0.00 0.00 0.00 4.61
7287 7506 3.551496 CTGCTGTTTCCCTCGCCCA 62.551 63.158 0.00 0.00 0.00 5.36
7288 7507 2.747855 CTGCTGTTTCCCTCGCCC 60.748 66.667 0.00 0.00 0.00 6.13
7289 7508 2.747855 CCTGCTGTTTCCCTCGCC 60.748 66.667 0.00 0.00 0.00 5.54
7290 7509 2.747855 CCCTGCTGTTTCCCTCGC 60.748 66.667 0.00 0.00 0.00 5.03
7291 7510 2.747855 GCCCTGCTGTTTCCCTCG 60.748 66.667 0.00 0.00 0.00 4.63
7326 7545 1.553884 CCACCTACCTCCTACCACCAA 60.554 57.143 0.00 0.00 0.00 3.67
7347 7566 5.675684 AAGGGTCAAAACAGTGATTTTGT 57.324 34.783 20.47 7.69 45.67 2.83
7348 7567 5.874261 ACAAAGGGTCAAAACAGTGATTTTG 59.126 36.000 17.60 17.60 46.48 2.44
7349 7568 5.874261 CACAAAGGGTCAAAACAGTGATTTT 59.126 36.000 0.00 0.00 31.87 1.82
7350 7569 5.418676 CACAAAGGGTCAAAACAGTGATTT 58.581 37.500 0.00 0.00 0.00 2.17
7351 7570 4.680440 GCACAAAGGGTCAAAACAGTGATT 60.680 41.667 0.00 0.00 0.00 2.57
7352 7571 3.181476 GCACAAAGGGTCAAAACAGTGAT 60.181 43.478 0.00 0.00 0.00 3.06
7353 7572 2.165437 GCACAAAGGGTCAAAACAGTGA 59.835 45.455 0.00 0.00 0.00 3.41
7354 7573 2.166254 AGCACAAAGGGTCAAAACAGTG 59.834 45.455 0.00 0.00 0.00 3.66
7355 7574 2.456577 AGCACAAAGGGTCAAAACAGT 58.543 42.857 0.00 0.00 0.00 3.55
7356 7575 4.142271 TGTTAGCACAAAGGGTCAAAACAG 60.142 41.667 0.00 0.00 0.00 3.16
7357 7576 3.764434 TGTTAGCACAAAGGGTCAAAACA 59.236 39.130 0.00 0.00 0.00 2.83
7358 7577 4.379339 TGTTAGCACAAAGGGTCAAAAC 57.621 40.909 0.00 0.00 0.00 2.43
7359 7578 5.407407 TTTGTTAGCACAAAGGGTCAAAA 57.593 34.783 0.00 0.00 46.06 2.44
7369 7588 5.010112 TCAATTCGGGAATTTGTTAGCACAA 59.990 36.000 3.97 0.00 41.39 3.33
7370 7589 4.520874 TCAATTCGGGAATTTGTTAGCACA 59.479 37.500 3.97 0.00 38.84 4.57
7371 7590 4.857037 GTCAATTCGGGAATTTGTTAGCAC 59.143 41.667 3.97 0.00 38.84 4.40
7372 7591 4.082463 GGTCAATTCGGGAATTTGTTAGCA 60.082 41.667 3.97 0.00 38.84 3.49
7373 7592 4.157840 AGGTCAATTCGGGAATTTGTTAGC 59.842 41.667 3.97 1.73 38.84 3.09
7374 7593 5.447279 CGAGGTCAATTCGGGAATTTGTTAG 60.447 44.000 3.97 0.00 38.84 2.34
7375 7594 4.393680 CGAGGTCAATTCGGGAATTTGTTA 59.606 41.667 3.97 0.00 38.84 2.41
7376 7595 3.190535 CGAGGTCAATTCGGGAATTTGTT 59.809 43.478 3.97 0.00 38.84 2.83
7377 7596 2.747446 CGAGGTCAATTCGGGAATTTGT 59.253 45.455 3.97 0.00 38.84 2.83
7378 7597 3.405170 CGAGGTCAATTCGGGAATTTG 57.595 47.619 3.97 1.77 38.84 2.32
7386 7605 0.871722 TTGCAACCGAGGTCAATTCG 59.128 50.000 0.00 0.00 37.78 3.34
7387 7606 3.363341 TTTTGCAACCGAGGTCAATTC 57.637 42.857 0.00 0.00 0.00 2.17
7388 7607 3.810310 TTTTTGCAACCGAGGTCAATT 57.190 38.095 0.00 0.00 0.00 2.32
7405 7624 9.987272 CAAAAGAGGTCAGATTAGGAAATTTTT 57.013 29.630 0.00 0.00 0.00 1.94
7406 7625 8.588472 CCAAAAGAGGTCAGATTAGGAAATTTT 58.412 33.333 0.00 0.00 0.00 1.82
7407 7626 7.730332 ACCAAAAGAGGTCAGATTAGGAAATTT 59.270 33.333 0.00 0.00 37.28 1.82
7408 7627 7.177392 CACCAAAAGAGGTCAGATTAGGAAATT 59.823 37.037 0.00 0.00 40.77 1.82
7409 7628 6.660949 CACCAAAAGAGGTCAGATTAGGAAAT 59.339 38.462 0.00 0.00 40.77 2.17
7410 7629 6.003950 CACCAAAAGAGGTCAGATTAGGAAA 58.996 40.000 0.00 0.00 40.77 3.13
7411 7630 5.309543 TCACCAAAAGAGGTCAGATTAGGAA 59.690 40.000 0.00 0.00 40.77 3.36
7412 7631 4.844085 TCACCAAAAGAGGTCAGATTAGGA 59.156 41.667 0.00 0.00 40.77 2.94
7413 7632 4.938226 GTCACCAAAAGAGGTCAGATTAGG 59.062 45.833 0.00 0.00 40.77 2.69
7414 7633 4.627467 CGTCACCAAAAGAGGTCAGATTAG 59.373 45.833 0.00 0.00 40.77 1.73
7415 7634 4.566004 CGTCACCAAAAGAGGTCAGATTA 58.434 43.478 0.00 0.00 40.77 1.75
7416 7635 3.403038 CGTCACCAAAAGAGGTCAGATT 58.597 45.455 0.00 0.00 40.77 2.40
7417 7636 2.872038 GCGTCACCAAAAGAGGTCAGAT 60.872 50.000 0.00 0.00 40.77 2.90
7418 7637 1.540363 GCGTCACCAAAAGAGGTCAGA 60.540 52.381 0.00 0.00 40.77 3.27
7419 7638 0.868406 GCGTCACCAAAAGAGGTCAG 59.132 55.000 0.00 0.00 40.77 3.51
7420 7639 0.534203 GGCGTCACCAAAAGAGGTCA 60.534 55.000 0.00 0.00 40.77 4.02
7421 7640 2.244946 GGCGTCACCAAAAGAGGTC 58.755 57.895 0.00 0.00 40.77 3.85
7422 7641 4.475527 GGCGTCACCAAAAGAGGT 57.524 55.556 0.00 0.00 44.48 3.85
7431 7650 2.040544 CAGGGATGTTGGCGTCACC 61.041 63.158 0.00 0.00 34.63 4.02
7432 7651 1.003839 TCAGGGATGTTGGCGTCAC 60.004 57.895 0.00 0.00 34.31 3.67
7433 7652 1.003839 GTCAGGGATGTTGGCGTCA 60.004 57.895 0.00 0.00 32.40 4.35
7434 7653 2.100631 CGTCAGGGATGTTGGCGTC 61.101 63.158 0.00 0.00 38.73 5.19
7435 7654 2.047274 CGTCAGGGATGTTGGCGT 60.047 61.111 0.00 0.00 38.73 5.68
7437 7656 1.021390 CAGACGTCAGGGATGTTGGC 61.021 60.000 19.50 0.00 31.35 4.52
7438 7657 0.391661 CCAGACGTCAGGGATGTTGG 60.392 60.000 18.73 10.20 31.35 3.77
7439 7658 0.391661 CCCAGACGTCAGGGATGTTG 60.392 60.000 35.99 14.46 44.73 3.33
7440 7659 0.836400 ACCCAGACGTCAGGGATGTT 60.836 55.000 42.66 23.82 44.73 2.71
7441 7660 0.836400 AACCCAGACGTCAGGGATGT 60.836 55.000 42.66 27.31 44.73 3.06
7442 7661 0.391661 CAACCCAGACGTCAGGGATG 60.392 60.000 42.66 37.21 44.73 3.51
7443 7662 1.983224 CAACCCAGACGTCAGGGAT 59.017 57.895 42.66 32.62 44.73 3.85
7444 7663 2.879233 GCAACCCAGACGTCAGGGA 61.879 63.158 42.66 0.00 44.73 4.20
7446 7665 0.606401 AATGCAACCCAGACGTCAGG 60.606 55.000 19.47 19.47 0.00 3.86
7447 7666 0.518636 CAATGCAACCCAGACGTCAG 59.481 55.000 19.50 10.04 0.00 3.51
7448 7667 0.888736 CCAATGCAACCCAGACGTCA 60.889 55.000 19.50 0.00 0.00 4.35
7449 7668 0.605319 TCCAATGCAACCCAGACGTC 60.605 55.000 7.70 7.70 0.00 4.34
7450 7669 0.606401 CTCCAATGCAACCCAGACGT 60.606 55.000 0.00 0.00 0.00 4.34
7451 7670 0.321564 TCTCCAATGCAACCCAGACG 60.322 55.000 0.00 0.00 0.00 4.18
7452 7671 1.168714 GTCTCCAATGCAACCCAGAC 58.831 55.000 0.00 0.00 0.00 3.51
7453 7672 0.321564 CGTCTCCAATGCAACCCAGA 60.322 55.000 0.00 0.00 0.00 3.86
7454 7673 1.926511 GCGTCTCCAATGCAACCCAG 61.927 60.000 0.00 0.00 39.85 4.45
7455 7674 1.971167 GCGTCTCCAATGCAACCCA 60.971 57.895 0.00 0.00 39.85 4.51
7456 7675 2.700773 GGCGTCTCCAATGCAACCC 61.701 63.158 0.00 0.00 42.04 4.11
7457 7676 1.926511 CTGGCGTCTCCAATGCAACC 61.927 60.000 0.00 0.00 46.01 3.77
7458 7677 1.503542 CTGGCGTCTCCAATGCAAC 59.496 57.895 0.00 0.00 46.01 4.17
7459 7678 1.675310 CCTGGCGTCTCCAATGCAA 60.675 57.895 0.00 0.00 46.01 4.08
7460 7679 2.046023 CCTGGCGTCTCCAATGCA 60.046 61.111 0.00 0.00 46.01 3.96
7461 7680 2.825836 CCCTGGCGTCTCCAATGC 60.826 66.667 0.00 0.00 46.01 3.56
7462 7681 1.450312 GTCCCTGGCGTCTCCAATG 60.450 63.158 0.00 0.00 46.01 2.82
7463 7682 2.670148 GGTCCCTGGCGTCTCCAAT 61.670 63.158 0.00 0.00 46.01 3.16
7464 7683 3.319198 GGTCCCTGGCGTCTCCAA 61.319 66.667 0.00 0.00 46.01 3.53
7477 7696 4.083862 GACCAGACGCCAGGGTCC 62.084 72.222 10.87 0.00 44.21 4.46
7481 7700 4.087892 CAGGGACCAGACGCCAGG 62.088 72.222 0.00 0.00 0.00 4.45
7482 7701 4.087892 CCAGGGACCAGACGCCAG 62.088 72.222 0.00 0.00 0.00 4.85
7507 7726 4.651008 TCAACGTGGTCGCGGGTC 62.651 66.667 6.13 0.00 41.18 4.46
7508 7727 4.955774 GTCAACGTGGTCGCGGGT 62.956 66.667 6.13 0.00 41.18 5.28
7513 7732 4.657824 AGCCGGTCAACGTGGTCG 62.658 66.667 1.90 0.00 42.24 4.79
7514 7733 3.041940 CAGCCGGTCAACGTGGTC 61.042 66.667 1.90 0.00 42.24 4.02
7515 7734 3.542676 TCAGCCGGTCAACGTGGT 61.543 61.111 1.90 0.00 42.24 4.16
7516 7735 3.041940 GTCAGCCGGTCAACGTGG 61.042 66.667 1.90 0.00 42.24 4.94
7517 7736 3.403057 CGTCAGCCGGTCAACGTG 61.403 66.667 1.90 0.00 42.24 4.49
7518 7737 3.908081 ACGTCAGCCGGTCAACGT 61.908 61.111 19.74 19.74 42.96 3.99
7519 7738 3.403057 CACGTCAGCCGGTCAACG 61.403 66.667 18.66 18.66 42.24 4.10
7520 7739 3.041940 CCACGTCAGCCGGTCAAC 61.042 66.667 1.90 0.00 42.24 3.18
7521 7740 4.980805 GCCACGTCAGCCGGTCAA 62.981 66.667 1.90 0.00 42.24 3.18
7523 7742 4.980805 TTGCCACGTCAGCCGGTC 62.981 66.667 1.90 0.00 42.24 4.79
7524 7743 4.555709 TTTGCCACGTCAGCCGGT 62.556 61.111 1.90 0.00 42.24 5.28
7525 7744 3.726517 CTTTGCCACGTCAGCCGG 61.727 66.667 0.00 0.00 42.24 6.13
7526 7745 3.726517 CCTTTGCCACGTCAGCCG 61.727 66.667 4.72 0.00 44.03 5.52
7527 7746 3.365265 CCCTTTGCCACGTCAGCC 61.365 66.667 4.72 0.00 0.00 4.85
7528 7747 3.365265 CCCCTTTGCCACGTCAGC 61.365 66.667 0.04 0.04 0.00 4.26
7529 7748 3.365265 GCCCCTTTGCCACGTCAG 61.365 66.667 0.00 0.00 0.00 3.51
7546 7765 3.322466 AAGGACCCTGGCGTCTGG 61.322 66.667 5.87 5.87 33.07 3.86
7547 7766 2.046892 CAAGGACCCTGGCGTCTG 60.047 66.667 12.89 0.00 33.07 3.51
7548 7767 3.322466 CCAAGGACCCTGGCGTCT 61.322 66.667 12.89 0.00 33.07 4.18
7552 7771 4.660938 AACGCCAAGGACCCTGGC 62.661 66.667 22.53 22.53 44.69 4.85
7553 7772 2.672996 CAACGCCAAGGACCCTGG 60.673 66.667 4.56 4.56 0.00 4.45
7554 7773 2.672996 CCAACGCCAAGGACCCTG 60.673 66.667 0.00 0.00 0.00 4.45
7555 7774 3.175710 ACCAACGCCAAGGACCCT 61.176 61.111 0.00 0.00 0.00 4.34
7556 7775 2.671963 GACCAACGCCAAGGACCC 60.672 66.667 0.00 0.00 0.00 4.46
7557 7776 2.671963 GGACCAACGCCAAGGACC 60.672 66.667 0.00 0.00 32.86 4.46
7558 7777 1.966451 CAGGACCAACGCCAAGGAC 60.966 63.158 0.00 0.00 0.00 3.85
7559 7778 2.429930 CAGGACCAACGCCAAGGA 59.570 61.111 0.00 0.00 0.00 3.36
7560 7779 2.119484 TACCAGGACCAACGCCAAGG 62.119 60.000 0.00 0.00 0.00 3.61
7561 7780 0.250553 TTACCAGGACCAACGCCAAG 60.251 55.000 0.00 0.00 0.00 3.61
7562 7781 0.250553 CTTACCAGGACCAACGCCAA 60.251 55.000 0.00 0.00 0.00 4.52
7563 7782 1.373435 CTTACCAGGACCAACGCCA 59.627 57.895 0.00 0.00 0.00 5.69
7564 7783 1.376812 CCTTACCAGGACCAACGCC 60.377 63.158 0.00 0.00 44.19 5.68
7565 7784 1.376812 CCCTTACCAGGACCAACGC 60.377 63.158 0.00 0.00 44.19 4.84
7566 7785 0.036671 GACCCTTACCAGGACCAACG 60.037 60.000 0.00 0.00 44.19 4.10
7567 7786 0.327259 GGACCCTTACCAGGACCAAC 59.673 60.000 0.00 0.00 44.19 3.77
7568 7787 0.104356 TGGACCCTTACCAGGACCAA 60.104 55.000 0.00 0.00 44.19 3.67
7569 7788 1.554992 TGGACCCTTACCAGGACCA 59.445 57.895 0.00 0.00 44.19 4.02
7570 7789 4.573261 TGGACCCTTACCAGGACC 57.427 61.111 0.00 0.00 44.19 4.46
7575 7794 2.288025 GGCGTCTGGACCCTTACCA 61.288 63.158 0.00 0.00 35.96 3.25
7576 7795 2.240162 CTGGCGTCTGGACCCTTACC 62.240 65.000 0.00 0.00 0.00 2.85
7577 7796 1.218316 CTGGCGTCTGGACCCTTAC 59.782 63.158 0.00 0.00 0.00 2.34
7578 7797 1.987855 CCTGGCGTCTGGACCCTTA 60.988 63.158 7.22 0.00 34.32 2.69
7579 7798 3.322466 CCTGGCGTCTGGACCCTT 61.322 66.667 7.22 0.00 34.32 3.95
7582 7801 4.083862 GACCCTGGCGTCTGGACC 62.084 72.222 15.35 1.66 34.32 4.46
7583 7802 4.083862 GGACCCTGGCGTCTGGAC 62.084 72.222 15.35 7.92 34.32 4.02
7584 7803 3.846405 AAGGACCCTGGCGTCTGGA 62.846 63.158 15.35 0.00 34.32 3.86
7585 7804 3.322466 AAGGACCCTGGCGTCTGG 61.322 66.667 5.87 5.87 33.07 3.86
7586 7805 2.046892 CAAGGACCCTGGCGTCTG 60.047 66.667 12.89 0.00 33.07 3.51
7587 7806 3.322466 CCAAGGACCCTGGCGTCT 61.322 66.667 12.89 0.00 33.07 4.18
7591 7810 4.660938 AACGCCAAGGACCCTGGC 62.661 66.667 22.53 22.53 44.69 4.85
7592 7811 2.115266 AAACGCCAAGGACCCTGG 59.885 61.111 4.56 4.56 0.00 4.45
7593 7812 2.268076 CCAAACGCCAAGGACCCTG 61.268 63.158 0.00 0.00 0.00 4.45
7594 7813 2.115266 CCAAACGCCAAGGACCCT 59.885 61.111 0.00 0.00 0.00 4.34
7595 7814 3.680786 GCCAAACGCCAAGGACCC 61.681 66.667 0.00 0.00 0.00 4.46
7604 7823 2.340328 CCTTACCAGGGCCAAACGC 61.340 63.158 6.18 0.00 36.36 4.84
7605 7824 3.996614 CCTTACCAGGGCCAAACG 58.003 61.111 6.18 0.00 36.36 3.60
7613 7832 5.130477 ACATGTATTACTGTCCCTTACCAGG 59.870 44.000 0.00 0.00 40.45 4.45
7614 7833 6.235231 ACATGTATTACTGTCCCTTACCAG 57.765 41.667 0.00 0.00 34.82 4.00
7615 7834 6.630203 AACATGTATTACTGTCCCTTACCA 57.370 37.500 0.00 0.00 0.00 3.25
7616 7835 6.882678 ACAAACATGTATTACTGTCCCTTACC 59.117 38.462 0.00 0.00 0.00 2.85
7617 7836 7.389607 ACACAAACATGTATTACTGTCCCTTAC 59.610 37.037 0.00 0.00 0.00 2.34
7618 7837 7.455058 ACACAAACATGTATTACTGTCCCTTA 58.545 34.615 0.00 0.00 0.00 2.69
7619 7838 6.303839 ACACAAACATGTATTACTGTCCCTT 58.696 36.000 0.00 0.00 0.00 3.95
7620 7839 5.876357 ACACAAACATGTATTACTGTCCCT 58.124 37.500 0.00 0.00 0.00 4.20
7621 7840 6.877322 ACTACACAAACATGTATTACTGTCCC 59.123 38.462 0.00 0.00 34.59 4.46
7622 7841 7.900782 ACTACACAAACATGTATTACTGTCC 57.099 36.000 0.00 0.00 34.59 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.