Multiple sequence alignment - TraesCS5B01G091500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G091500 chr5B 100.000 6082 0 0 1 6082 118955804 118961885 0.000000e+00 11232.0
1 TraesCS5B01G091500 chr5B 97.396 192 5 0 174 365 577239205 577239396 1.630000e-85 327.0
2 TraesCS5B01G091500 chr5B 96.354 192 7 0 174 365 342181898 342181707 3.540000e-82 316.0
3 TraesCS5B01G091500 chr5B 93.506 77 5 0 1 77 488250866 488250942 1.390000e-21 115.0
4 TraesCS5B01G091500 chr5B 86.538 104 13 1 358 460 357658268 357658165 4.980000e-21 113.0
5 TraesCS5B01G091500 chr5A 95.633 3435 106 21 677 4081 112093865 112097285 0.000000e+00 5472.0
6 TraesCS5B01G091500 chr5A 93.515 1465 73 13 4627 6082 112097778 112099229 0.000000e+00 2159.0
7 TraesCS5B01G091500 chr5A 95.034 443 17 4 4084 4524 112097329 112097768 0.000000e+00 691.0
8 TraesCS5B01G091500 chr5A 85.096 208 11 6 473 662 112093674 112093879 1.730000e-45 195.0
9 TraesCS5B01G091500 chr5A 91.803 61 5 0 5508 5568 577931147 577931207 1.090000e-12 86.1
10 TraesCS5B01G091500 chr5D 99.312 2180 14 1 1983 4162 108368763 108370941 0.000000e+00 3941.0
11 TraesCS5B01G091500 chr5D 98.662 1420 18 1 3999 5418 108370936 108372354 0.000000e+00 2516.0
12 TraesCS5B01G091500 chr5D 94.180 1323 47 15 677 1987 108367172 108368476 0.000000e+00 1989.0
13 TraesCS5B01G091500 chr5D 91.667 540 36 6 5426 5961 108372521 108373055 0.000000e+00 739.0
14 TraesCS5B01G091500 chr5D 92.742 124 7 1 5959 6082 108373158 108373279 1.740000e-40 178.0
15 TraesCS5B01G091500 chr5D 78.171 339 30 24 361 662 108366855 108367186 6.270000e-40 176.0
16 TraesCS5B01G091500 chr5D 91.803 61 5 0 5508 5568 458870283 458870343 1.090000e-12 86.1
17 TraesCS5B01G091500 chr5D 87.671 73 8 1 5497 5568 340758350 340758422 3.910000e-12 84.2
18 TraesCS5B01G091500 chr5D 90.164 61 6 0 5508 5568 458874229 458874289 5.050000e-11 80.5
19 TraesCS5B01G091500 chr2B 88.064 687 52 15 1119 1789 415442649 415441977 0.000000e+00 787.0
20 TraesCS5B01G091500 chr2B 97.396 192 5 0 174 365 359315605 359315414 1.630000e-85 327.0
21 TraesCS5B01G091500 chr2B 95.833 192 8 0 174 365 373109005 373109196 1.650000e-80 311.0
22 TraesCS5B01G091500 chr2B 86.239 109 12 3 361 467 705217773 705217666 1.390000e-21 115.0
23 TraesCS5B01G091500 chr2B 85.057 87 13 0 5380 5466 399941982 399941896 8.400000e-14 89.8
24 TraesCS5B01G091500 chr2B 87.143 70 9 0 296 365 454847613 454847682 5.050000e-11 80.5
25 TraesCS5B01G091500 chr7B 90.633 395 26 6 953 1346 646038413 646038029 1.170000e-141 514.0
26 TraesCS5B01G091500 chr7B 96.296 189 7 0 177 365 700631385 700631197 1.650000e-80 311.0
27 TraesCS5B01G091500 chr7B 86.538 104 13 1 359 461 714002384 714002281 4.980000e-21 113.0
28 TraesCS5B01G091500 chr6B 90.127 395 28 6 953 1346 124633313 124632929 2.530000e-138 503.0
29 TraesCS5B01G091500 chr6B 96.629 89 3 0 1 89 527575001 527574913 1.370000e-31 148.0
30 TraesCS5B01G091500 chr6B 86.538 104 13 1 358 460 190480157 190480260 4.980000e-21 113.0
31 TraesCS5B01G091500 chr7D 97.895 190 4 0 176 365 10633107 10633296 4.540000e-86 329.0
32 TraesCS5B01G091500 chr7D 87.129 101 11 2 361 460 10873093 10872994 4.980000e-21 113.0
33 TraesCS5B01G091500 chr6D 95.789 190 8 0 176 365 17967823 17967634 2.130000e-79 307.0
34 TraesCS5B01G091500 chr6D 93.220 59 4 0 5509 5567 86643244 86643302 3.020000e-13 87.9
35 TraesCS5B01G091500 chr6D 90.769 65 4 1 5509 5573 317011463 317011525 1.090000e-12 86.1
36 TraesCS5B01G091500 chr4B 90.374 187 16 1 3377 3563 53475077 53474893 1.690000e-60 244.0
37 TraesCS5B01G091500 chr4B 89.637 193 4 1 174 366 535340804 535340628 1.320000e-56 231.0
38 TraesCS5B01G091500 chr2D 89.362 94 9 1 369 461 79687287 79687380 3.850000e-22 117.0
39 TraesCS5B01G091500 chr2D 86.207 87 12 0 5380 5466 331763137 331763051 1.800000e-15 95.3
40 TraesCS5B01G091500 chr2D 86.047 86 12 0 5380 5465 461083349 461083434 6.490000e-15 93.5
41 TraesCS5B01G091500 chr1D 85.714 112 14 2 358 467 430409107 430408996 3.850000e-22 117.0
42 TraesCS5B01G091500 chr3B 86.538 104 13 1 358 460 604529112 604529215 4.980000e-21 113.0
43 TraesCS5B01G091500 chr3B 90.769 65 4 2 5521 5584 530257513 530257450 1.090000e-12 86.1
44 TraesCS5B01G091500 chr3B 78.832 137 20 6 5377 5506 586737760 586737894 3.910000e-12 84.2
45 TraesCS5B01G091500 chr1B 86.538 104 13 1 359 461 110686874 110686977 4.980000e-21 113.0
46 TraesCS5B01G091500 chr1B 100.000 40 0 0 127 166 160484009 160484048 2.350000e-09 75.0
47 TraesCS5B01G091500 chr6A 85.714 91 13 0 5376 5466 99403184 99403094 5.020000e-16 97.1
48 TraesCS5B01G091500 chr6A 92.982 57 4 0 5509 5565 104308497 104308553 3.910000e-12 84.2
49 TraesCS5B01G091500 chr4A 85.227 88 11 2 5380 5466 467295062 467295148 8.400000e-14 89.8
50 TraesCS5B01G091500 chr3D 79.562 137 19 6 5377 5506 447584143 447584277 8.400000e-14 89.8
51 TraesCS5B01G091500 chr3A 84.615 91 12 2 5377 5466 589249086 589249175 8.400000e-14 89.8
52 TraesCS5B01G091500 chr7A 86.667 75 4 6 5525 5596 220747911 220747840 1.820000e-10 78.7
53 TraesCS5B01G091500 chrUn 100.000 40 0 0 127 166 378755335 378755296 2.350000e-09 75.0
54 TraesCS5B01G091500 chrUn 100.000 40 0 0 127 166 391621519 391621480 2.350000e-09 75.0
55 TraesCS5B01G091500 chrUn 100.000 40 0 0 127 166 402800129 402800168 2.350000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G091500 chr5B 118955804 118961885 6081 False 11232.000000 11232 100.000000 1 6082 1 chr5B.!!$F1 6081
1 TraesCS5B01G091500 chr5A 112093674 112099229 5555 False 2129.250000 5472 92.319500 473 6082 4 chr5A.!!$F2 5609
2 TraesCS5B01G091500 chr5D 108366855 108373279 6424 False 1589.833333 3941 92.455667 361 6082 6 chr5D.!!$F2 5721
3 TraesCS5B01G091500 chr2B 415441977 415442649 672 True 787.000000 787 88.064000 1119 1789 1 chr2B.!!$R3 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 246 0.033781 TCGGGTTAGTTTGGACGGTG 59.966 55.000 0.00 0.00 0.00 4.94 F
251 252 0.034337 TAGTTTGGACGGTGGAGCAC 59.966 55.000 0.00 0.00 0.00 4.40 F
326 327 0.099082 GGAGTCGTTCGTCCAGCTAG 59.901 60.000 0.00 0.00 32.55 3.42 F
327 328 0.523757 GAGTCGTTCGTCCAGCTAGC 60.524 60.000 6.62 6.62 0.00 3.42 F
1225 1286 0.737219 CCTCAACTACGAGGTACGGG 59.263 60.000 0.00 0.00 46.48 5.28 F
2006 2377 0.526524 TCTTTGTTGCGGCAAAACGG 60.527 50.000 18.23 7.41 37.82 4.44 F
3027 3402 0.867329 TCTCGACGATGAATGCTGCG 60.867 55.000 0.00 0.00 0.00 5.18 F
4607 5184 4.143115 ACAAGTGATTGTCGTGCGAATAAG 60.143 41.667 0.00 0.00 0.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1443 0.958382 TCTTCCCCCAAAACGCATCG 60.958 55.000 0.00 0.00 0.00 3.84 R
1864 1944 2.228138 TTCGACCACACTTGTACCAC 57.772 50.000 0.00 0.00 0.00 4.16 R
1904 1984 5.184864 TCACATCCAATTCCCATTGTGTTAC 59.815 40.000 0.00 0.00 38.58 2.50 R
1939 2019 6.252655 CCAACTGAACTAAACAAAGAAAACGG 59.747 38.462 0.00 0.00 0.00 4.44 R
2672 3047 1.321474 TGGCTTCAAGAACAAGGCTG 58.679 50.000 7.42 0.00 44.71 4.85 R
3827 4202 0.321122 CAGTCACCACCTCTGCTTCC 60.321 60.000 0.00 0.00 0.00 3.46 R
4881 5460 2.644676 GAGATACTTGGGCCCTTGTTC 58.355 52.381 25.70 18.54 0.00 3.18 R
6015 6862 0.860533 CGTTTGGTTTGGCTGCAATG 59.139 50.000 0.50 0.00 0.00 2.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.798682 GAGGCCGGGGGAAGGAGA 62.799 72.222 2.18 0.00 0.00 3.71
41 42 4.109656 AGGCCGGGGGAAGGAGAT 62.110 66.667 2.18 0.00 0.00 2.75
42 43 3.561241 GGCCGGGGGAAGGAGATC 61.561 72.222 2.18 0.00 0.00 2.75
43 44 3.930012 GCCGGGGGAAGGAGATCG 61.930 72.222 2.18 0.00 0.00 3.69
44 45 3.234730 CCGGGGGAAGGAGATCGG 61.235 72.222 0.00 0.00 0.00 4.18
45 46 3.234730 CGGGGGAAGGAGATCGGG 61.235 72.222 0.00 0.00 0.00 5.14
46 47 3.561241 GGGGGAAGGAGATCGGGC 61.561 72.222 0.00 0.00 0.00 6.13
47 48 3.930012 GGGGAAGGAGATCGGGCG 61.930 72.222 0.00 0.00 0.00 6.13
48 49 3.930012 GGGAAGGAGATCGGGCGG 61.930 72.222 0.00 0.00 0.00 6.13
49 50 4.610714 GGAAGGAGATCGGGCGGC 62.611 72.222 0.00 0.00 0.00 6.53
50 51 4.951963 GAAGGAGATCGGGCGGCG 62.952 72.222 0.51 0.51 0.00 6.46
76 77 4.477975 GACGCTCACCCGACGGAG 62.478 72.222 17.49 6.03 0.00 4.63
79 80 3.827898 GCTCACCCGACGGAGGAG 61.828 72.222 22.78 22.78 37.25 3.69
80 81 2.361357 CTCACCCGACGGAGGAGT 60.361 66.667 17.49 0.75 32.72 3.85
81 82 2.360852 TCACCCGACGGAGGAGTC 60.361 66.667 17.49 0.00 37.76 3.36
82 83 3.450115 CACCCGACGGAGGAGTCC 61.450 72.222 17.49 0.00 37.85 3.85
83 84 3.975591 ACCCGACGGAGGAGTCCA 61.976 66.667 17.49 0.00 44.18 4.02
84 85 2.442272 CCCGACGGAGGAGTCCAT 60.442 66.667 17.49 0.00 44.18 3.41
85 86 2.786495 CCCGACGGAGGAGTCCATG 61.786 68.421 17.49 2.70 44.18 3.66
86 87 1.753078 CCGACGGAGGAGTCCATGA 60.753 63.158 8.64 0.00 44.18 3.07
87 88 1.729470 CCGACGGAGGAGTCCATGAG 61.729 65.000 8.64 2.15 44.18 2.90
88 89 1.439644 GACGGAGGAGTCCATGAGC 59.560 63.158 12.86 0.00 44.18 4.26
89 90 2.343163 GACGGAGGAGTCCATGAGCG 62.343 65.000 12.86 0.00 44.18 5.03
90 91 2.818132 GGAGGAGTCCATGAGCGG 59.182 66.667 12.86 0.00 43.31 5.52
91 92 1.758514 GGAGGAGTCCATGAGCGGA 60.759 63.158 12.86 0.00 43.31 5.54
92 93 1.330655 GGAGGAGTCCATGAGCGGAA 61.331 60.000 12.86 0.00 43.31 4.30
93 94 0.537188 GAGGAGTCCATGAGCGGAAA 59.463 55.000 12.86 0.00 36.62 3.13
94 95 0.984230 AGGAGTCCATGAGCGGAAAA 59.016 50.000 12.86 0.00 36.62 2.29
95 96 1.065854 AGGAGTCCATGAGCGGAAAAG 60.066 52.381 12.86 0.00 36.62 2.27
96 97 0.729690 GAGTCCATGAGCGGAAAAGC 59.270 55.000 0.00 0.00 36.62 3.51
97 98 1.021390 AGTCCATGAGCGGAAAAGCG 61.021 55.000 0.00 0.00 43.00 4.68
98 99 1.745115 TCCATGAGCGGAAAAGCGG 60.745 57.895 0.00 0.00 43.00 5.52
99 100 1.745115 CCATGAGCGGAAAAGCGGA 60.745 57.895 0.00 0.00 43.00 5.54
100 101 1.305219 CCATGAGCGGAAAAGCGGAA 61.305 55.000 0.00 0.00 43.00 4.30
101 102 0.521291 CATGAGCGGAAAAGCGGAAA 59.479 50.000 0.00 0.00 43.00 3.13
102 103 1.068610 CATGAGCGGAAAAGCGGAAAA 60.069 47.619 0.00 0.00 43.00 2.29
103 104 1.025812 TGAGCGGAAAAGCGGAAAAA 58.974 45.000 0.00 0.00 43.00 1.94
104 105 1.001815 TGAGCGGAAAAGCGGAAAAAG 60.002 47.619 0.00 0.00 43.00 2.27
105 106 1.001706 GAGCGGAAAAGCGGAAAAAGT 60.002 47.619 0.00 0.00 43.00 2.66
106 107 1.128513 GCGGAAAAGCGGAAAAAGTG 58.871 50.000 0.00 0.00 0.00 3.16
107 108 1.535226 GCGGAAAAGCGGAAAAAGTGT 60.535 47.619 0.00 0.00 0.00 3.55
108 109 2.804647 CGGAAAAGCGGAAAAAGTGTT 58.195 42.857 0.00 0.00 0.00 3.32
109 110 2.533942 CGGAAAAGCGGAAAAAGTGTTG 59.466 45.455 0.00 0.00 0.00 3.33
110 111 3.732471 CGGAAAAGCGGAAAAAGTGTTGA 60.732 43.478 0.00 0.00 0.00 3.18
111 112 3.550275 GGAAAAGCGGAAAAAGTGTTGAC 59.450 43.478 0.00 0.00 0.00 3.18
112 113 4.421058 GAAAAGCGGAAAAAGTGTTGACT 58.579 39.130 0.00 0.00 0.00 3.41
113 114 3.420839 AAGCGGAAAAAGTGTTGACTG 57.579 42.857 0.00 0.00 30.61 3.51
114 115 2.365582 AGCGGAAAAAGTGTTGACTGT 58.634 42.857 0.00 0.00 30.61 3.55
115 116 3.537580 AGCGGAAAAAGTGTTGACTGTA 58.462 40.909 0.00 0.00 30.61 2.74
116 117 4.134563 AGCGGAAAAAGTGTTGACTGTAT 58.865 39.130 0.00 0.00 30.61 2.29
117 118 4.024048 AGCGGAAAAAGTGTTGACTGTATG 60.024 41.667 0.00 0.00 30.61 2.39
118 119 4.783242 CGGAAAAAGTGTTGACTGTATGG 58.217 43.478 0.00 0.00 30.61 2.74
119 120 4.513692 CGGAAAAAGTGTTGACTGTATGGA 59.486 41.667 0.00 0.00 30.61 3.41
120 121 5.334105 CGGAAAAAGTGTTGACTGTATGGAG 60.334 44.000 0.00 0.00 30.61 3.86
121 122 5.438761 AAAAAGTGTTGACTGTATGGAGC 57.561 39.130 0.00 0.00 30.61 4.70
122 123 2.770164 AGTGTTGACTGTATGGAGCC 57.230 50.000 0.00 0.00 0.00 4.70
123 124 2.260822 AGTGTTGACTGTATGGAGCCT 58.739 47.619 0.00 0.00 0.00 4.58
124 125 2.234908 AGTGTTGACTGTATGGAGCCTC 59.765 50.000 0.00 0.00 0.00 4.70
125 126 2.028112 GTGTTGACTGTATGGAGCCTCA 60.028 50.000 0.00 0.00 0.00 3.86
126 127 2.234661 TGTTGACTGTATGGAGCCTCAG 59.765 50.000 0.00 0.00 0.00 3.35
127 128 0.826715 TGACTGTATGGAGCCTCAGC 59.173 55.000 0.00 0.00 40.32 4.26
128 129 0.249238 GACTGTATGGAGCCTCAGCG 60.249 60.000 0.00 0.00 46.67 5.18
129 130 0.972983 ACTGTATGGAGCCTCAGCGT 60.973 55.000 0.00 0.00 46.67 5.07
130 131 0.176680 CTGTATGGAGCCTCAGCGTT 59.823 55.000 0.00 0.00 46.67 4.84
131 132 0.175760 TGTATGGAGCCTCAGCGTTC 59.824 55.000 0.00 0.00 46.67 3.95
132 133 0.530870 GTATGGAGCCTCAGCGTTCC 60.531 60.000 0.00 0.00 46.67 3.62
133 134 0.687757 TATGGAGCCTCAGCGTTCCT 60.688 55.000 0.00 0.00 46.67 3.36
134 135 2.125350 GGAGCCTCAGCGTTCCTG 60.125 66.667 0.00 0.00 46.67 3.86
141 142 1.967535 TCAGCGTTCCTGAGAGTGG 59.032 57.895 0.00 0.00 45.44 4.00
142 143 0.539669 TCAGCGTTCCTGAGAGTGGA 60.540 55.000 0.00 0.00 45.44 4.02
143 144 0.534412 CAGCGTTCCTGAGAGTGGAT 59.466 55.000 0.00 0.00 44.64 3.41
144 145 0.820871 AGCGTTCCTGAGAGTGGATC 59.179 55.000 0.00 0.00 33.09 3.36
145 146 0.179097 GCGTTCCTGAGAGTGGATCC 60.179 60.000 4.20 4.20 33.09 3.36
146 147 1.479709 CGTTCCTGAGAGTGGATCCT 58.520 55.000 14.23 0.00 33.09 3.24
147 148 2.656002 CGTTCCTGAGAGTGGATCCTA 58.344 52.381 14.23 0.00 33.09 2.94
148 149 2.359531 CGTTCCTGAGAGTGGATCCTAC 59.640 54.545 14.23 9.61 33.09 3.18
149 150 2.350057 TCCTGAGAGTGGATCCTACG 57.650 55.000 14.23 0.00 0.00 3.51
150 151 1.844497 TCCTGAGAGTGGATCCTACGA 59.156 52.381 14.23 0.00 0.00 3.43
151 152 2.241430 TCCTGAGAGTGGATCCTACGAA 59.759 50.000 14.23 0.00 0.00 3.85
152 153 3.024547 CCTGAGAGTGGATCCTACGAAA 58.975 50.000 14.23 0.00 0.00 3.46
153 154 3.067461 CCTGAGAGTGGATCCTACGAAAG 59.933 52.174 14.23 4.34 0.00 2.62
154 155 3.948473 CTGAGAGTGGATCCTACGAAAGA 59.052 47.826 14.23 0.00 0.00 2.52
155 156 3.948473 TGAGAGTGGATCCTACGAAAGAG 59.052 47.826 14.23 0.00 0.00 2.85
156 157 4.200874 GAGAGTGGATCCTACGAAAGAGA 58.799 47.826 14.23 0.00 0.00 3.10
157 158 4.601084 AGAGTGGATCCTACGAAAGAGAA 58.399 43.478 14.23 0.00 0.00 2.87
158 159 5.017490 AGAGTGGATCCTACGAAAGAGAAA 58.983 41.667 14.23 0.00 0.00 2.52
159 160 5.126384 AGAGTGGATCCTACGAAAGAGAAAG 59.874 44.000 14.23 0.00 0.00 2.62
160 161 4.160626 AGTGGATCCTACGAAAGAGAAAGG 59.839 45.833 14.23 0.00 0.00 3.11
161 162 3.451178 TGGATCCTACGAAAGAGAAAGGG 59.549 47.826 14.23 0.00 0.00 3.95
162 163 3.705072 GGATCCTACGAAAGAGAAAGGGA 59.295 47.826 3.84 0.00 0.00 4.20
163 164 4.441773 GGATCCTACGAAAGAGAAAGGGAC 60.442 50.000 3.84 0.00 0.00 4.46
165 166 4.927049 TCCTACGAAAGAGAAAGGGACTA 58.073 43.478 0.00 0.00 38.49 2.59
166 167 4.704057 TCCTACGAAAGAGAAAGGGACTAC 59.296 45.833 0.00 0.00 38.49 2.73
167 168 3.957591 ACGAAAGAGAAAGGGACTACC 57.042 47.619 0.00 0.00 38.49 3.18
168 169 3.236896 ACGAAAGAGAAAGGGACTACCA 58.763 45.455 0.00 0.00 43.89 3.25
169 170 3.644738 ACGAAAGAGAAAGGGACTACCAA 59.355 43.478 0.00 0.00 43.89 3.67
170 171 3.995048 CGAAAGAGAAAGGGACTACCAAC 59.005 47.826 0.00 0.00 43.89 3.77
171 172 4.325119 GAAAGAGAAAGGGACTACCAACC 58.675 47.826 0.00 0.00 43.89 3.77
172 173 2.267192 AGAGAAAGGGACTACCAACCC 58.733 52.381 0.00 0.00 45.88 4.11
176 177 4.462280 GGGACTACCAACCCGCCG 62.462 72.222 0.00 0.00 39.85 6.46
178 179 4.078516 GACTACCAACCCGCCGCT 62.079 66.667 0.00 0.00 0.00 5.52
179 180 4.078516 ACTACCAACCCGCCGCTC 62.079 66.667 0.00 0.00 0.00 5.03
180 181 4.832608 CTACCAACCCGCCGCTCC 62.833 72.222 0.00 0.00 0.00 4.70
188 189 4.812476 CCGCCGCTCCGACATTCA 62.812 66.667 0.00 0.00 0.00 2.57
189 190 2.586079 CGCCGCTCCGACATTCAT 60.586 61.111 0.00 0.00 0.00 2.57
190 191 2.874694 CGCCGCTCCGACATTCATG 61.875 63.158 0.00 0.00 0.00 3.07
191 192 1.815421 GCCGCTCCGACATTCATGT 60.815 57.895 0.00 0.00 45.16 3.21
192 193 1.369091 GCCGCTCCGACATTCATGTT 61.369 55.000 0.00 0.00 41.95 2.71
193 194 0.652592 CCGCTCCGACATTCATGTTC 59.347 55.000 0.00 0.00 41.95 3.18
194 195 0.652592 CGCTCCGACATTCATGTTCC 59.347 55.000 0.00 0.00 41.95 3.62
195 196 1.737838 GCTCCGACATTCATGTTCCA 58.262 50.000 0.00 0.00 41.95 3.53
196 197 2.083774 GCTCCGACATTCATGTTCCAA 58.916 47.619 0.00 0.00 41.95 3.53
197 198 2.159517 GCTCCGACATTCATGTTCCAAC 60.160 50.000 0.00 0.00 41.95 3.77
198 199 2.073056 TCCGACATTCATGTTCCAACG 58.927 47.619 0.00 0.00 41.95 4.10
199 200 2.073056 CCGACATTCATGTTCCAACGA 58.927 47.619 0.00 0.00 41.95 3.85
200 201 2.482336 CCGACATTCATGTTCCAACGAA 59.518 45.455 0.00 0.00 41.95 3.85
201 202 3.058570 CCGACATTCATGTTCCAACGAAA 60.059 43.478 0.00 0.00 41.95 3.46
202 203 3.906008 CGACATTCATGTTCCAACGAAAC 59.094 43.478 0.00 0.00 41.95 2.78
203 204 4.553742 CGACATTCATGTTCCAACGAAACA 60.554 41.667 0.00 0.00 41.95 2.83
204 205 5.255710 ACATTCATGTTCCAACGAAACAA 57.744 34.783 0.00 0.00 39.84 2.83
205 206 5.040635 ACATTCATGTTCCAACGAAACAAC 58.959 37.500 0.00 0.00 39.84 3.32
206 207 4.703645 TTCATGTTCCAACGAAACAACA 57.296 36.364 0.00 0.00 39.84 3.33
207 208 4.022464 TCATGTTCCAACGAAACAACAC 57.978 40.909 0.00 0.00 39.84 3.32
208 209 2.529136 TGTTCCAACGAAACAACACG 57.471 45.000 0.00 0.00 33.86 4.49
209 210 2.074576 TGTTCCAACGAAACAACACGA 58.925 42.857 0.00 0.00 33.86 4.35
210 211 2.483106 TGTTCCAACGAAACAACACGAA 59.517 40.909 0.00 0.00 33.86 3.85
211 212 3.095738 GTTCCAACGAAACAACACGAAG 58.904 45.455 0.00 0.00 0.00 3.79
212 213 1.062880 TCCAACGAAACAACACGAAGC 59.937 47.619 0.00 0.00 0.00 3.86
213 214 1.063469 CCAACGAAACAACACGAAGCT 59.937 47.619 0.00 0.00 0.00 3.74
214 215 2.101125 CAACGAAACAACACGAAGCTG 58.899 47.619 0.00 0.00 0.00 4.24
215 216 1.647346 ACGAAACAACACGAAGCTGA 58.353 45.000 0.00 0.00 0.00 4.26
216 217 1.593006 ACGAAACAACACGAAGCTGAG 59.407 47.619 0.00 0.00 0.00 3.35
217 218 1.657538 CGAAACAACACGAAGCTGAGC 60.658 52.381 0.00 0.00 0.00 4.26
218 219 0.663153 AAACAACACGAAGCTGAGCC 59.337 50.000 0.00 0.00 0.00 4.70
219 220 1.498865 AACAACACGAAGCTGAGCCG 61.499 55.000 0.00 0.25 0.00 5.52
220 221 3.044305 AACACGAAGCTGAGCCGC 61.044 61.111 0.00 0.00 0.00 6.53
221 222 3.521529 AACACGAAGCTGAGCCGCT 62.522 57.895 0.00 0.00 43.31 5.52
222 223 2.154798 AACACGAAGCTGAGCCGCTA 62.155 55.000 0.00 0.00 39.86 4.26
223 224 2.161486 CACGAAGCTGAGCCGCTAC 61.161 63.158 0.00 0.00 39.86 3.58
224 225 2.344203 ACGAAGCTGAGCCGCTACT 61.344 57.895 0.00 0.00 39.86 2.57
225 226 1.153745 CGAAGCTGAGCCGCTACTT 60.154 57.895 0.00 0.00 39.86 2.24
226 227 0.737715 CGAAGCTGAGCCGCTACTTT 60.738 55.000 0.00 0.00 39.86 2.66
227 228 1.003108 GAAGCTGAGCCGCTACTTTC 58.997 55.000 0.00 0.00 39.86 2.62
228 229 0.737715 AAGCTGAGCCGCTACTTTCG 60.738 55.000 0.00 0.00 39.86 3.46
230 231 1.519455 CTGAGCCGCTACTTTCGGG 60.519 63.158 0.00 0.00 46.51 5.14
233 234 4.917474 GCCGCTACTTTCGGGTTA 57.083 55.556 3.54 0.00 46.51 2.85
234 235 2.674296 GCCGCTACTTTCGGGTTAG 58.326 57.895 3.54 0.00 46.51 2.34
235 236 0.108472 GCCGCTACTTTCGGGTTAGT 60.108 55.000 3.54 0.00 46.51 2.24
236 237 1.673923 GCCGCTACTTTCGGGTTAGTT 60.674 52.381 3.54 0.00 46.51 2.24
237 238 2.691927 CCGCTACTTTCGGGTTAGTTT 58.308 47.619 0.00 0.00 42.99 2.66
238 239 2.414138 CCGCTACTTTCGGGTTAGTTTG 59.586 50.000 0.00 0.00 42.99 2.93
239 240 2.414138 CGCTACTTTCGGGTTAGTTTGG 59.586 50.000 0.00 0.00 0.00 3.28
240 241 3.667360 GCTACTTTCGGGTTAGTTTGGA 58.333 45.455 0.00 0.00 0.00 3.53
241 242 3.434641 GCTACTTTCGGGTTAGTTTGGAC 59.565 47.826 0.00 0.00 0.00 4.02
242 243 2.486918 ACTTTCGGGTTAGTTTGGACG 58.513 47.619 0.00 0.00 0.00 4.79
243 244 1.802365 CTTTCGGGTTAGTTTGGACGG 59.198 52.381 0.00 0.00 0.00 4.79
244 245 0.758123 TTCGGGTTAGTTTGGACGGT 59.242 50.000 0.00 0.00 0.00 4.83
245 246 0.033781 TCGGGTTAGTTTGGACGGTG 59.966 55.000 0.00 0.00 0.00 4.94
246 247 0.952010 CGGGTTAGTTTGGACGGTGG 60.952 60.000 0.00 0.00 0.00 4.61
247 248 0.397564 GGGTTAGTTTGGACGGTGGA 59.602 55.000 0.00 0.00 0.00 4.02
248 249 1.609841 GGGTTAGTTTGGACGGTGGAG 60.610 57.143 0.00 0.00 0.00 3.86
249 250 1.154197 GTTAGTTTGGACGGTGGAGC 58.846 55.000 0.00 0.00 0.00 4.70
250 251 0.759959 TTAGTTTGGACGGTGGAGCA 59.240 50.000 0.00 0.00 0.00 4.26
251 252 0.034337 TAGTTTGGACGGTGGAGCAC 59.966 55.000 0.00 0.00 0.00 4.40
260 261 4.891566 GTGGAGCACCTGTACTCG 57.108 61.111 0.71 0.00 37.04 4.18
261 262 2.264124 GTGGAGCACCTGTACTCGA 58.736 57.895 0.71 0.00 37.04 4.04
262 263 0.109226 GTGGAGCACCTGTACTCGAC 60.109 60.000 0.71 0.00 35.06 4.20
263 264 1.136984 GGAGCACCTGTACTCGACG 59.863 63.158 0.00 0.00 33.55 5.12
264 265 1.514443 GAGCACCTGTACTCGACGC 60.514 63.158 0.00 0.00 0.00 5.19
265 266 2.506438 GCACCTGTACTCGACGCC 60.506 66.667 0.00 0.00 0.00 5.68
266 267 2.959372 CACCTGTACTCGACGCCA 59.041 61.111 0.00 0.00 0.00 5.69
267 268 1.287815 CACCTGTACTCGACGCCAA 59.712 57.895 0.00 0.00 0.00 4.52
268 269 0.108804 CACCTGTACTCGACGCCAAT 60.109 55.000 0.00 0.00 0.00 3.16
269 270 0.108804 ACCTGTACTCGACGCCAATG 60.109 55.000 0.00 0.00 0.00 2.82
270 271 1.421410 CCTGTACTCGACGCCAATGC 61.421 60.000 0.00 0.00 0.00 3.56
271 272 0.735978 CTGTACTCGACGCCAATGCA 60.736 55.000 0.00 0.00 37.32 3.96
272 273 1.011968 TGTACTCGACGCCAATGCAC 61.012 55.000 0.00 0.00 37.32 4.57
273 274 1.011968 GTACTCGACGCCAATGCACA 61.012 55.000 0.00 0.00 37.32 4.57
274 275 1.011968 TACTCGACGCCAATGCACAC 61.012 55.000 0.00 0.00 37.32 3.82
275 276 3.027170 CTCGACGCCAATGCACACC 62.027 63.158 0.00 0.00 37.32 4.16
276 277 3.353029 CGACGCCAATGCACACCA 61.353 61.111 0.00 0.00 37.32 4.17
277 278 2.689785 CGACGCCAATGCACACCAT 61.690 57.895 0.00 0.00 37.32 3.55
278 279 1.365368 CGACGCCAATGCACACCATA 61.365 55.000 0.00 0.00 37.32 2.74
279 280 0.378257 GACGCCAATGCACACCATAG 59.622 55.000 0.00 0.00 37.32 2.23
280 281 1.064621 CGCCAATGCACACCATAGC 59.935 57.895 0.00 0.00 37.32 2.97
281 282 1.655885 CGCCAATGCACACCATAGCA 61.656 55.000 0.00 0.00 45.92 3.49
282 283 0.101759 GCCAATGCACACCATAGCAG 59.898 55.000 0.00 0.00 44.94 4.24
283 284 1.466856 CCAATGCACACCATAGCAGT 58.533 50.000 0.00 0.00 44.94 4.40
284 285 2.642427 CCAATGCACACCATAGCAGTA 58.358 47.619 0.00 0.00 44.94 2.74
285 286 3.016031 CCAATGCACACCATAGCAGTAA 58.984 45.455 0.00 0.00 44.94 2.24
286 287 3.443329 CCAATGCACACCATAGCAGTAAA 59.557 43.478 0.00 0.00 44.94 2.01
287 288 4.098349 CCAATGCACACCATAGCAGTAAAT 59.902 41.667 0.00 0.00 44.94 1.40
288 289 5.299028 CCAATGCACACCATAGCAGTAAATA 59.701 40.000 0.00 0.00 44.94 1.40
289 290 6.201517 CAATGCACACCATAGCAGTAAATAC 58.798 40.000 0.00 0.00 44.94 1.89
290 291 3.868661 TGCACACCATAGCAGTAAATACG 59.131 43.478 0.00 0.00 35.51 3.06
291 292 3.303132 GCACACCATAGCAGTAAATACGC 60.303 47.826 0.00 0.00 0.00 4.42
292 293 4.119862 CACACCATAGCAGTAAATACGCT 58.880 43.478 12.20 12.20 38.70 5.07
293 294 4.025730 CACACCATAGCAGTAAATACGCTG 60.026 45.833 15.31 0.00 36.95 5.18
294 295 4.119862 CACCATAGCAGTAAATACGCTGT 58.880 43.478 15.31 9.20 36.95 4.40
295 296 4.025730 CACCATAGCAGTAAATACGCTGTG 60.026 45.833 17.95 17.95 40.59 3.66
296 297 3.059597 CCATAGCAGTAAATACGCTGTGC 60.060 47.826 18.75 9.87 40.14 4.57
297 298 2.386661 AGCAGTAAATACGCTGTGCT 57.613 45.000 8.42 4.76 35.74 4.40
298 299 3.520290 AGCAGTAAATACGCTGTGCTA 57.480 42.857 3.94 0.00 39.44 3.49
299 300 3.187700 AGCAGTAAATACGCTGTGCTAC 58.812 45.455 3.94 0.00 39.44 3.58
300 301 2.034842 GCAGTAAATACGCTGTGCTACG 60.035 50.000 0.00 0.00 35.33 3.51
301 302 2.034842 CAGTAAATACGCTGTGCTACGC 60.035 50.000 0.00 0.00 0.00 4.42
306 307 2.880879 CGCTGTGCTACGCGTCAT 60.881 61.111 18.63 0.00 44.01 3.06
307 308 2.697425 GCTGTGCTACGCGTCATG 59.303 61.111 18.63 8.91 0.00 3.07
308 309 2.802667 GCTGTGCTACGCGTCATGG 61.803 63.158 18.63 6.02 0.00 3.66
309 310 1.153842 CTGTGCTACGCGTCATGGA 60.154 57.895 18.63 5.90 0.00 3.41
310 311 1.142185 CTGTGCTACGCGTCATGGAG 61.142 60.000 18.63 8.62 0.00 3.86
311 312 1.153823 GTGCTACGCGTCATGGAGT 60.154 57.895 18.63 0.00 0.00 3.85
312 313 1.138883 TGCTACGCGTCATGGAGTC 59.861 57.895 18.63 4.26 0.00 3.36
313 314 1.939785 GCTACGCGTCATGGAGTCG 60.940 63.158 18.63 0.00 0.00 4.18
314 315 1.428219 CTACGCGTCATGGAGTCGT 59.572 57.895 18.63 4.78 37.19 4.34
315 316 0.179171 CTACGCGTCATGGAGTCGTT 60.179 55.000 18.63 0.00 34.97 3.85
316 317 0.179181 TACGCGTCATGGAGTCGTTC 60.179 55.000 18.63 0.00 34.97 3.95
317 318 2.497092 CGCGTCATGGAGTCGTTCG 61.497 63.158 0.00 0.00 0.00 3.95
318 319 1.443872 GCGTCATGGAGTCGTTCGT 60.444 57.895 0.00 0.00 0.00 3.85
319 320 1.403972 GCGTCATGGAGTCGTTCGTC 61.404 60.000 0.00 0.00 0.00 4.20
320 321 0.797249 CGTCATGGAGTCGTTCGTCC 60.797 60.000 0.00 0.00 0.00 4.79
321 322 0.242825 GTCATGGAGTCGTTCGTCCA 59.757 55.000 6.93 6.93 46.93 4.02
322 323 0.526211 TCATGGAGTCGTTCGTCCAG 59.474 55.000 9.63 4.07 46.09 3.86
323 324 1.078759 CATGGAGTCGTTCGTCCAGC 61.079 60.000 9.63 0.00 46.09 4.85
324 325 1.251527 ATGGAGTCGTTCGTCCAGCT 61.252 55.000 9.63 0.00 46.09 4.24
325 326 0.607217 TGGAGTCGTTCGTCCAGCTA 60.607 55.000 0.00 0.00 37.96 3.32
326 327 0.099082 GGAGTCGTTCGTCCAGCTAG 59.901 60.000 0.00 0.00 32.55 3.42
327 328 0.523757 GAGTCGTTCGTCCAGCTAGC 60.524 60.000 6.62 6.62 0.00 3.42
328 329 1.868251 GTCGTTCGTCCAGCTAGCG 60.868 63.158 9.55 4.28 0.00 4.26
329 330 2.579787 CGTTCGTCCAGCTAGCGG 60.580 66.667 16.51 16.51 0.00 5.52
330 331 2.202756 GTTCGTCCAGCTAGCGGG 60.203 66.667 26.19 26.19 0.00 6.13
331 332 2.361992 TTCGTCCAGCTAGCGGGA 60.362 61.111 29.88 29.88 37.95 5.14
332 333 2.415608 TTCGTCCAGCTAGCGGGAG 61.416 63.158 33.35 25.46 40.75 4.30
354 355 4.039357 CGAGCTCGTCCACACCGT 62.039 66.667 27.79 0.00 34.11 4.83
355 356 2.126424 GAGCTCGTCCACACCGTC 60.126 66.667 0.00 0.00 0.00 4.79
356 357 3.948086 GAGCTCGTCCACACCGTCG 62.948 68.421 0.00 0.00 0.00 5.12
361 362 4.955774 GTCCACACCGTCGCCGTT 62.956 66.667 0.00 0.00 0.00 4.44
362 363 4.651008 TCCACACCGTCGCCGTTC 62.651 66.667 0.00 0.00 0.00 3.95
363 364 4.657824 CCACACCGTCGCCGTTCT 62.658 66.667 0.00 0.00 0.00 3.01
364 365 3.103911 CACACCGTCGCCGTTCTC 61.104 66.667 0.00 0.00 0.00 2.87
365 366 3.598715 ACACCGTCGCCGTTCTCA 61.599 61.111 0.00 0.00 0.00 3.27
382 383 9.485206 GCCGTTCTCAAATATAAGTCCTTATAA 57.515 33.333 10.04 0.00 40.26 0.98
397 398 9.543783 AAGTCCTTATAAAGATCCAATACGAAC 57.456 33.333 0.00 0.00 0.00 3.95
462 463 9.944663 TTCACTCATTTTGTTTTGTATGTAGAC 57.055 29.630 0.00 0.00 0.00 2.59
519 547 9.452287 GTTACTTTTGGGTGAGTATTTATGGTA 57.548 33.333 0.00 0.00 0.00 3.25
650 696 8.567948 ACATCTATTTCAAATTGAGTGAACGTT 58.432 29.630 0.00 0.00 34.78 3.99
724 772 2.203082 ACGCTCACTGCCAGACTGA 61.203 57.895 3.32 0.00 38.78 3.41
742 790 6.763610 CAGACTGAAGTAATTATGAACTCCCC 59.236 42.308 0.00 0.00 0.00 4.81
759 807 4.141528 ACTCCCCAATGAAAATGCAACAAA 60.142 37.500 0.00 0.00 0.00 2.83
825 881 1.375523 GGCGAGCTCGAAGGGAAAA 60.376 57.895 38.74 0.00 43.02 2.29
827 883 1.087501 GCGAGCTCGAAGGGAAAAAT 58.912 50.000 38.74 0.00 43.02 1.82
835 891 8.129211 CGAGCTCGAAGGGAAAAATAAATAAAT 58.871 33.333 32.06 0.00 43.02 1.40
1225 1286 0.737219 CCTCAACTACGAGGTACGGG 59.263 60.000 0.00 0.00 46.48 5.28
1239 1300 3.428797 CGGGAATCGTCGCCTCTA 58.571 61.111 0.00 0.00 33.17 2.43
1330 1395 5.543405 TGTTTGGGTGAGATGGAATGAAAAT 59.457 36.000 0.00 0.00 0.00 1.82
1378 1443 3.070159 TGCCTATATGCTGTCTGTCCTTC 59.930 47.826 1.58 0.00 0.00 3.46
1564 1629 7.114754 AGAATGATACATTCTGCTTGGAAGAA 58.885 34.615 21.11 0.00 37.03 2.52
1576 1641 7.112122 TCTGCTTGGAAGAAAAGATAGCATTA 58.888 34.615 0.00 0.00 36.66 1.90
1656 1724 2.704725 TCAGCATTCGTGCTTTTTCC 57.295 45.000 0.00 0.00 43.52 3.13
1659 1727 2.727798 CAGCATTCGTGCTTTTTCCTTG 59.272 45.455 0.00 0.00 43.52 3.61
1671 1739 2.414250 TTTCCTTGGGGGCAATTCTT 57.586 45.000 0.00 0.00 34.39 2.52
1717 1791 9.396022 AGAACTCAAAGAAAGTGAAATAACTCA 57.604 29.630 0.00 0.00 0.00 3.41
1864 1944 5.327616 TGTGCAATTTGTAATGGATGGAG 57.672 39.130 0.00 0.00 0.00 3.86
2006 2377 0.526524 TCTTTGTTGCGGCAAAACGG 60.527 50.000 18.23 7.41 37.82 4.44
2015 2386 1.595328 GCGGCAAAACGGTTTCATTTT 59.405 42.857 6.57 0.00 0.00 1.82
2672 3047 1.453379 AGGATCACAGCATGCTGCC 60.453 57.895 40.65 32.75 46.52 4.85
2779 3154 4.808558 TCTGACCATTTTGTTATGCTTGC 58.191 39.130 0.00 0.00 0.00 4.01
3027 3402 0.867329 TCTCGACGATGAATGCTGCG 60.867 55.000 0.00 0.00 0.00 5.18
4607 5184 4.143115 ACAAGTGATTGTCGTGCGAATAAG 60.143 41.667 0.00 0.00 0.00 1.73
4881 5460 2.418910 ATCGGTGCTCTCCTGTCGG 61.419 63.158 0.00 0.00 0.00 4.79
5146 5725 5.777223 CCAATTTTCCTTCTCTTCCTCCTTT 59.223 40.000 0.00 0.00 0.00 3.11
5231 5810 0.877649 ACTGTGCTGCTGTTGTCGAG 60.878 55.000 0.00 0.00 0.00 4.04
5271 5850 2.656947 AAGTAAGTTGCTTGCCTGGA 57.343 45.000 5.32 0.00 0.00 3.86
5272 5851 2.191128 AGTAAGTTGCTTGCCTGGAG 57.809 50.000 0.00 0.00 0.00 3.86
5316 5895 5.801531 TCAATATCACCCGCTACTACATT 57.198 39.130 0.00 0.00 0.00 2.71
5459 6197 2.425312 TGAAACGAGCCAACAAACACAT 59.575 40.909 0.00 0.00 0.00 3.21
5511 6249 8.625467 AAGGTTAGGAACATCTTATAGTCCTT 57.375 34.615 0.00 0.00 0.00 3.36
5659 6401 4.686554 CGTGAGCTGAGCCTAATTAATACC 59.313 45.833 0.00 0.00 0.00 2.73
5688 6430 3.814504 ATTGAACACCCAACCAGAGAT 57.185 42.857 0.00 0.00 0.00 2.75
5719 6461 6.463614 GCCTAATACAGATCCATTGACACTCT 60.464 42.308 0.00 0.00 0.00 3.24
5738 6480 4.039609 ACTCTTTTTGCCAATCTTCCCTTG 59.960 41.667 0.00 0.00 0.00 3.61
5760 6502 6.642707 TGAAACAACCCAGTCGAAATAAAT 57.357 33.333 0.00 0.00 0.00 1.40
5869 6611 5.911752 ACAGATCTGAAGCGAACTATTCAT 58.088 37.500 29.27 0.00 35.04 2.57
5907 6649 1.134280 AGGAGAATTGGTGCCTCATCG 60.134 52.381 0.00 0.00 0.00 3.84
6015 6862 3.375299 CCAAGTAGCCATGCTTACTTGTC 59.625 47.826 27.71 6.10 42.04 3.18
6027 6874 3.552684 GCTTACTTGTCATTGCAGCCAAA 60.553 43.478 0.00 0.00 34.05 3.28
6063 6910 3.847184 TGGCGGATATATGGGTTAATGGA 59.153 43.478 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.798682 TCTCCTTCCCCCGGCCTC 62.799 72.222 0.00 0.00 0.00 4.70
24 25 4.109656 ATCTCCTTCCCCCGGCCT 62.110 66.667 0.00 0.00 0.00 5.19
25 26 3.561241 GATCTCCTTCCCCCGGCC 61.561 72.222 0.00 0.00 0.00 6.13
26 27 3.930012 CGATCTCCTTCCCCCGGC 61.930 72.222 0.00 0.00 0.00 6.13
27 28 3.234730 CCGATCTCCTTCCCCCGG 61.235 72.222 0.00 0.00 0.00 5.73
28 29 3.234730 CCCGATCTCCTTCCCCCG 61.235 72.222 0.00 0.00 0.00 5.73
29 30 3.561241 GCCCGATCTCCTTCCCCC 61.561 72.222 0.00 0.00 0.00 5.40
30 31 3.930012 CGCCCGATCTCCTTCCCC 61.930 72.222 0.00 0.00 0.00 4.81
31 32 3.930012 CCGCCCGATCTCCTTCCC 61.930 72.222 0.00 0.00 0.00 3.97
32 33 4.610714 GCCGCCCGATCTCCTTCC 62.611 72.222 0.00 0.00 0.00 3.46
33 34 4.951963 CGCCGCCCGATCTCCTTC 62.952 72.222 0.00 0.00 40.02 3.46
55 56 4.436998 GTCGGGTGAGCGTCCCTG 62.437 72.222 11.03 2.42 42.56 4.45
59 60 4.477975 CTCCGTCGGGTGAGCGTC 62.478 72.222 12.29 0.00 33.83 5.19
62 63 3.827898 CTCCTCCGTCGGGTGAGC 61.828 72.222 12.29 0.00 33.83 4.26
63 64 2.361357 ACTCCTCCGTCGGGTGAG 60.361 66.667 21.92 21.92 38.45 3.51
64 65 2.360852 GACTCCTCCGTCGGGTGA 60.361 66.667 12.29 7.43 33.83 4.02
65 66 3.450115 GGACTCCTCCGTCGGGTG 61.450 72.222 12.29 4.82 34.75 4.61
66 67 3.298300 ATGGACTCCTCCGTCGGGT 62.298 63.158 12.29 0.24 39.88 5.28
67 68 2.442272 ATGGACTCCTCCGTCGGG 60.442 66.667 12.29 1.87 39.88 5.14
68 69 1.729470 CTCATGGACTCCTCCGTCGG 61.729 65.000 4.39 4.39 39.88 4.79
69 70 1.730487 CTCATGGACTCCTCCGTCG 59.270 63.158 0.00 0.00 39.88 5.12
70 71 1.439644 GCTCATGGACTCCTCCGTC 59.560 63.158 0.00 0.00 39.88 4.79
71 72 2.418910 CGCTCATGGACTCCTCCGT 61.419 63.158 0.00 0.00 39.88 4.69
72 73 2.415010 CGCTCATGGACTCCTCCG 59.585 66.667 0.00 0.00 39.88 4.63
73 74 1.330655 TTCCGCTCATGGACTCCTCC 61.331 60.000 0.00 0.00 37.89 4.30
74 75 0.537188 TTTCCGCTCATGGACTCCTC 59.463 55.000 0.00 0.00 37.89 3.71
75 76 0.984230 TTTTCCGCTCATGGACTCCT 59.016 50.000 0.00 0.00 37.89 3.69
76 77 1.373570 CTTTTCCGCTCATGGACTCC 58.626 55.000 0.00 0.00 37.89 3.85
77 78 0.729690 GCTTTTCCGCTCATGGACTC 59.270 55.000 0.00 0.00 37.89 3.36
78 79 1.021390 CGCTTTTCCGCTCATGGACT 61.021 55.000 0.00 0.00 37.89 3.85
79 80 1.425428 CGCTTTTCCGCTCATGGAC 59.575 57.895 0.00 0.00 37.89 4.02
80 81 1.745115 CCGCTTTTCCGCTCATGGA 60.745 57.895 0.00 0.00 35.83 3.41
81 82 1.305219 TTCCGCTTTTCCGCTCATGG 61.305 55.000 0.00 0.00 0.00 3.66
82 83 0.521291 TTTCCGCTTTTCCGCTCATG 59.479 50.000 0.00 0.00 0.00 3.07
83 84 1.243902 TTTTCCGCTTTTCCGCTCAT 58.756 45.000 0.00 0.00 0.00 2.90
84 85 1.001815 CTTTTTCCGCTTTTCCGCTCA 60.002 47.619 0.00 0.00 0.00 4.26
85 86 1.001706 ACTTTTTCCGCTTTTCCGCTC 60.002 47.619 0.00 0.00 0.00 5.03
86 87 1.029681 ACTTTTTCCGCTTTTCCGCT 58.970 45.000 0.00 0.00 0.00 5.52
87 88 1.128513 CACTTTTTCCGCTTTTCCGC 58.871 50.000 0.00 0.00 0.00 5.54
88 89 2.485266 ACACTTTTTCCGCTTTTCCG 57.515 45.000 0.00 0.00 0.00 4.30
89 90 3.550275 GTCAACACTTTTTCCGCTTTTCC 59.450 43.478 0.00 0.00 0.00 3.13
90 91 4.265320 CAGTCAACACTTTTTCCGCTTTTC 59.735 41.667 0.00 0.00 0.00 2.29
91 92 4.173256 CAGTCAACACTTTTTCCGCTTTT 58.827 39.130 0.00 0.00 0.00 2.27
92 93 3.192633 ACAGTCAACACTTTTTCCGCTTT 59.807 39.130 0.00 0.00 0.00 3.51
93 94 2.752903 ACAGTCAACACTTTTTCCGCTT 59.247 40.909 0.00 0.00 0.00 4.68
94 95 2.365582 ACAGTCAACACTTTTTCCGCT 58.634 42.857 0.00 0.00 0.00 5.52
95 96 2.844122 ACAGTCAACACTTTTTCCGC 57.156 45.000 0.00 0.00 0.00 5.54
96 97 4.513692 TCCATACAGTCAACACTTTTTCCG 59.486 41.667 0.00 0.00 0.00 4.30
97 98 5.562890 GCTCCATACAGTCAACACTTTTTCC 60.563 44.000 0.00 0.00 0.00 3.13
98 99 5.452777 GCTCCATACAGTCAACACTTTTTC 58.547 41.667 0.00 0.00 0.00 2.29
99 100 4.278419 GGCTCCATACAGTCAACACTTTTT 59.722 41.667 0.00 0.00 0.00 1.94
100 101 3.821033 GGCTCCATACAGTCAACACTTTT 59.179 43.478 0.00 0.00 0.00 2.27
101 102 3.073062 AGGCTCCATACAGTCAACACTTT 59.927 43.478 0.00 0.00 0.00 2.66
102 103 2.639839 AGGCTCCATACAGTCAACACTT 59.360 45.455 0.00 0.00 0.00 3.16
103 104 2.234908 GAGGCTCCATACAGTCAACACT 59.765 50.000 2.15 0.00 0.00 3.55
104 105 2.028112 TGAGGCTCCATACAGTCAACAC 60.028 50.000 12.86 0.00 0.00 3.32
105 106 2.234661 CTGAGGCTCCATACAGTCAACA 59.765 50.000 12.86 0.00 0.00 3.33
106 107 2.898705 CTGAGGCTCCATACAGTCAAC 58.101 52.381 12.86 0.00 0.00 3.18
107 108 1.208052 GCTGAGGCTCCATACAGTCAA 59.792 52.381 12.86 0.00 35.22 3.18
108 109 0.826715 GCTGAGGCTCCATACAGTCA 59.173 55.000 12.86 0.00 35.22 3.41
109 110 0.249238 CGCTGAGGCTCCATACAGTC 60.249 60.000 12.86 0.00 36.09 3.51
110 111 0.972983 ACGCTGAGGCTCCATACAGT 60.973 55.000 12.86 0.87 36.09 3.55
111 112 0.176680 AACGCTGAGGCTCCATACAG 59.823 55.000 12.86 3.79 36.09 2.74
112 113 0.175760 GAACGCTGAGGCTCCATACA 59.824 55.000 12.86 0.00 36.09 2.29
113 114 0.530870 GGAACGCTGAGGCTCCATAC 60.531 60.000 12.86 0.00 34.24 2.39
114 115 0.687757 AGGAACGCTGAGGCTCCATA 60.688 55.000 12.86 0.00 35.86 2.74
115 116 1.992277 AGGAACGCTGAGGCTCCAT 60.992 57.895 12.86 0.00 35.86 3.41
116 117 2.604686 AGGAACGCTGAGGCTCCA 60.605 61.111 12.86 0.00 35.86 3.86
117 118 2.125350 CAGGAACGCTGAGGCTCC 60.125 66.667 12.86 0.00 34.26 4.70
118 119 1.153667 CTCAGGAACGCTGAGGCTC 60.154 63.158 7.79 7.79 43.21 4.70
119 120 1.603236 CTCTCAGGAACGCTGAGGCT 61.603 60.000 15.69 0.00 45.97 4.58
120 121 1.153667 CTCTCAGGAACGCTGAGGC 60.154 63.158 15.69 0.00 45.97 4.70
121 122 0.108898 CACTCTCAGGAACGCTGAGG 60.109 60.000 15.69 10.38 45.97 3.86
122 123 0.108898 CCACTCTCAGGAACGCTGAG 60.109 60.000 11.13 11.13 46.97 3.35
123 124 0.539669 TCCACTCTCAGGAACGCTGA 60.540 55.000 0.00 0.00 30.71 4.26
124 125 0.534412 ATCCACTCTCAGGAACGCTG 59.466 55.000 0.00 0.00 38.93 5.18
125 126 0.820871 GATCCACTCTCAGGAACGCT 59.179 55.000 0.00 0.00 38.93 5.07
126 127 0.179097 GGATCCACTCTCAGGAACGC 60.179 60.000 6.95 0.00 38.93 4.84
127 128 1.479709 AGGATCCACTCTCAGGAACG 58.520 55.000 15.82 0.00 38.93 3.95
128 129 2.359531 CGTAGGATCCACTCTCAGGAAC 59.640 54.545 15.82 0.00 38.93 3.62
129 130 2.241430 TCGTAGGATCCACTCTCAGGAA 59.759 50.000 15.82 0.00 38.93 3.36
130 131 1.844497 TCGTAGGATCCACTCTCAGGA 59.156 52.381 15.82 0.16 39.97 3.86
131 132 2.350057 TCGTAGGATCCACTCTCAGG 57.650 55.000 15.82 0.00 0.00 3.86
132 133 3.948473 TCTTTCGTAGGATCCACTCTCAG 59.052 47.826 15.82 3.11 0.00 3.35
133 134 3.948473 CTCTTTCGTAGGATCCACTCTCA 59.052 47.826 15.82 0.00 0.00 3.27
134 135 4.200874 TCTCTTTCGTAGGATCCACTCTC 58.799 47.826 15.82 0.00 0.00 3.20
135 136 4.237976 TCTCTTTCGTAGGATCCACTCT 57.762 45.455 15.82 0.00 0.00 3.24
136 137 4.985538 TTCTCTTTCGTAGGATCCACTC 57.014 45.455 15.82 2.62 0.00 3.51
137 138 4.160626 CCTTTCTCTTTCGTAGGATCCACT 59.839 45.833 15.82 0.00 0.00 4.00
138 139 4.434520 CCTTTCTCTTTCGTAGGATCCAC 58.565 47.826 15.82 9.26 0.00 4.02
139 140 3.451178 CCCTTTCTCTTTCGTAGGATCCA 59.549 47.826 15.82 0.00 0.00 3.41
140 141 3.705072 TCCCTTTCTCTTTCGTAGGATCC 59.295 47.826 2.48 2.48 0.00 3.36
141 142 4.403113 AGTCCCTTTCTCTTTCGTAGGATC 59.597 45.833 0.00 0.00 0.00 3.36
142 143 4.354662 AGTCCCTTTCTCTTTCGTAGGAT 58.645 43.478 0.00 0.00 0.00 3.24
143 144 3.775910 AGTCCCTTTCTCTTTCGTAGGA 58.224 45.455 0.00 0.00 0.00 2.94
144 145 4.142204 GGTAGTCCCTTTCTCTTTCGTAGG 60.142 50.000 0.00 0.00 0.00 3.18
145 146 4.461781 TGGTAGTCCCTTTCTCTTTCGTAG 59.538 45.833 0.00 0.00 0.00 3.51
146 147 4.410099 TGGTAGTCCCTTTCTCTTTCGTA 58.590 43.478 0.00 0.00 0.00 3.43
147 148 3.236896 TGGTAGTCCCTTTCTCTTTCGT 58.763 45.455 0.00 0.00 0.00 3.85
148 149 3.955650 TGGTAGTCCCTTTCTCTTTCG 57.044 47.619 0.00 0.00 0.00 3.46
149 150 4.325119 GGTTGGTAGTCCCTTTCTCTTTC 58.675 47.826 0.00 0.00 0.00 2.62
150 151 3.074094 GGGTTGGTAGTCCCTTTCTCTTT 59.926 47.826 0.00 0.00 40.48 2.52
151 152 2.643304 GGGTTGGTAGTCCCTTTCTCTT 59.357 50.000 0.00 0.00 40.48 2.85
152 153 2.267192 GGGTTGGTAGTCCCTTTCTCT 58.733 52.381 0.00 0.00 40.48 3.10
153 154 1.066358 CGGGTTGGTAGTCCCTTTCTC 60.066 57.143 0.00 0.00 41.40 2.87
154 155 0.981943 CGGGTTGGTAGTCCCTTTCT 59.018 55.000 0.00 0.00 41.40 2.52
155 156 0.675837 GCGGGTTGGTAGTCCCTTTC 60.676 60.000 0.00 0.00 41.40 2.62
156 157 1.377612 GCGGGTTGGTAGTCCCTTT 59.622 57.895 0.00 0.00 41.40 3.11
157 158 2.599757 GGCGGGTTGGTAGTCCCTT 61.600 63.158 0.00 0.00 41.40 3.95
158 159 3.007323 GGCGGGTTGGTAGTCCCT 61.007 66.667 0.00 0.00 41.40 4.20
159 160 4.462280 CGGCGGGTTGGTAGTCCC 62.462 72.222 0.00 0.00 40.26 4.46
161 162 4.078516 AGCGGCGGGTTGGTAGTC 62.079 66.667 9.78 0.00 0.00 2.59
162 163 4.078516 GAGCGGCGGGTTGGTAGT 62.079 66.667 9.78 0.00 0.00 2.73
163 164 4.832608 GGAGCGGCGGGTTGGTAG 62.833 72.222 9.78 0.00 0.00 3.18
171 172 4.812476 TGAATGTCGGAGCGGCGG 62.812 66.667 9.78 0.00 32.50 6.13
172 173 2.586079 ATGAATGTCGGAGCGGCG 60.586 61.111 0.51 0.51 32.50 6.46
173 174 1.369091 AACATGAATGTCGGAGCGGC 61.369 55.000 0.00 0.00 40.80 6.53
174 175 0.652592 GAACATGAATGTCGGAGCGG 59.347 55.000 0.00 0.00 40.80 5.52
175 176 0.652592 GGAACATGAATGTCGGAGCG 59.347 55.000 0.00 0.00 40.80 5.03
176 177 1.737838 TGGAACATGAATGTCGGAGC 58.262 50.000 0.00 0.00 40.80 4.70
177 178 2.094258 CGTTGGAACATGAATGTCGGAG 59.906 50.000 0.00 0.00 40.80 4.63
178 179 2.073056 CGTTGGAACATGAATGTCGGA 58.927 47.619 0.00 0.00 40.80 4.55
179 180 2.073056 TCGTTGGAACATGAATGTCGG 58.927 47.619 0.00 0.00 40.80 4.79
180 181 3.804518 TTCGTTGGAACATGAATGTCG 57.195 42.857 0.00 0.00 40.80 4.35
181 182 4.854399 TGTTTCGTTGGAACATGAATGTC 58.146 39.130 0.00 0.00 40.80 3.06
182 183 4.909696 TGTTTCGTTGGAACATGAATGT 57.090 36.364 0.00 0.00 44.20 2.71
183 184 5.039984 TGTTGTTTCGTTGGAACATGAATG 58.960 37.500 0.00 0.00 39.30 2.67
184 185 5.040635 GTGTTGTTTCGTTGGAACATGAAT 58.959 37.500 0.00 0.00 39.30 2.57
185 186 4.416620 GTGTTGTTTCGTTGGAACATGAA 58.583 39.130 0.00 0.00 39.30 2.57
186 187 3.486043 CGTGTTGTTTCGTTGGAACATGA 60.486 43.478 0.00 0.00 39.30 3.07
187 188 2.781101 CGTGTTGTTTCGTTGGAACATG 59.219 45.455 0.00 0.00 39.30 3.21
188 189 2.678836 TCGTGTTGTTTCGTTGGAACAT 59.321 40.909 0.00 0.00 39.30 2.71
189 190 2.074576 TCGTGTTGTTTCGTTGGAACA 58.925 42.857 0.00 0.00 0.00 3.18
190 191 2.810028 TCGTGTTGTTTCGTTGGAAC 57.190 45.000 0.00 0.00 0.00 3.62
191 192 2.476519 GCTTCGTGTTGTTTCGTTGGAA 60.477 45.455 0.00 0.00 0.00 3.53
192 193 1.062880 GCTTCGTGTTGTTTCGTTGGA 59.937 47.619 0.00 0.00 0.00 3.53
193 194 1.063469 AGCTTCGTGTTGTTTCGTTGG 59.937 47.619 0.00 0.00 0.00 3.77
194 195 2.101125 CAGCTTCGTGTTGTTTCGTTG 58.899 47.619 0.00 0.00 0.00 4.10
195 196 2.004017 TCAGCTTCGTGTTGTTTCGTT 58.996 42.857 0.00 0.00 0.00 3.85
196 197 1.593006 CTCAGCTTCGTGTTGTTTCGT 59.407 47.619 0.00 0.00 0.00 3.85
197 198 1.657538 GCTCAGCTTCGTGTTGTTTCG 60.658 52.381 0.00 0.00 0.00 3.46
198 199 1.334149 GGCTCAGCTTCGTGTTGTTTC 60.334 52.381 0.00 0.00 0.00 2.78
199 200 0.663153 GGCTCAGCTTCGTGTTGTTT 59.337 50.000 0.00 0.00 0.00 2.83
200 201 1.498865 CGGCTCAGCTTCGTGTTGTT 61.499 55.000 0.00 0.00 0.00 2.83
201 202 1.956170 CGGCTCAGCTTCGTGTTGT 60.956 57.895 0.00 0.00 0.00 3.32
202 203 2.856032 CGGCTCAGCTTCGTGTTG 59.144 61.111 0.00 0.00 0.00 3.33
203 204 2.154798 TAGCGGCTCAGCTTCGTGTT 62.155 55.000 5.39 0.00 46.80 3.32
204 205 2.636412 TAGCGGCTCAGCTTCGTGT 61.636 57.895 5.39 0.00 46.80 4.49
205 206 2.161486 GTAGCGGCTCAGCTTCGTG 61.161 63.158 5.39 0.00 46.80 4.35
206 207 1.878656 AAGTAGCGGCTCAGCTTCGT 61.879 55.000 5.39 0.00 46.80 3.85
207 208 0.737715 AAAGTAGCGGCTCAGCTTCG 60.738 55.000 5.39 0.00 46.80 3.79
208 209 1.003108 GAAAGTAGCGGCTCAGCTTC 58.997 55.000 5.39 2.05 46.80 3.86
209 210 0.737715 CGAAAGTAGCGGCTCAGCTT 60.738 55.000 5.39 7.16 46.80 3.74
211 212 2.167861 CCGAAAGTAGCGGCTCAGC 61.168 63.158 5.39 0.00 42.55 4.26
212 213 4.094684 CCGAAAGTAGCGGCTCAG 57.905 61.111 5.39 0.00 42.55 3.35
218 219 2.414138 CCAAACTAACCCGAAAGTAGCG 59.586 50.000 0.00 0.00 0.00 4.26
219 220 3.434641 GTCCAAACTAACCCGAAAGTAGC 59.565 47.826 0.00 0.00 0.00 3.58
220 221 3.676646 CGTCCAAACTAACCCGAAAGTAG 59.323 47.826 0.00 0.00 0.00 2.57
221 222 3.554752 CCGTCCAAACTAACCCGAAAGTA 60.555 47.826 0.00 0.00 0.00 2.24
222 223 2.486918 CGTCCAAACTAACCCGAAAGT 58.513 47.619 0.00 0.00 0.00 2.66
223 224 1.802365 CCGTCCAAACTAACCCGAAAG 59.198 52.381 0.00 0.00 0.00 2.62
224 225 1.140652 ACCGTCCAAACTAACCCGAAA 59.859 47.619 0.00 0.00 0.00 3.46
225 226 0.758123 ACCGTCCAAACTAACCCGAA 59.242 50.000 0.00 0.00 0.00 4.30
226 227 0.033781 CACCGTCCAAACTAACCCGA 59.966 55.000 0.00 0.00 0.00 5.14
227 228 0.952010 CCACCGTCCAAACTAACCCG 60.952 60.000 0.00 0.00 0.00 5.28
228 229 0.397564 TCCACCGTCCAAACTAACCC 59.602 55.000 0.00 0.00 0.00 4.11
229 230 1.804601 CTCCACCGTCCAAACTAACC 58.195 55.000 0.00 0.00 0.00 2.85
230 231 1.154197 GCTCCACCGTCCAAACTAAC 58.846 55.000 0.00 0.00 0.00 2.34
231 232 0.759959 TGCTCCACCGTCCAAACTAA 59.240 50.000 0.00 0.00 0.00 2.24
232 233 0.034337 GTGCTCCACCGTCCAAACTA 59.966 55.000 0.00 0.00 0.00 2.24
233 234 1.227853 GTGCTCCACCGTCCAAACT 60.228 57.895 0.00 0.00 0.00 2.66
234 235 2.258726 GGTGCTCCACCGTCCAAAC 61.259 63.158 0.00 0.00 44.95 2.93
235 236 2.112297 GGTGCTCCACCGTCCAAA 59.888 61.111 0.00 0.00 44.95 3.28
243 244 0.109226 GTCGAGTACAGGTGCTCCAC 60.109 60.000 7.70 5.85 38.81 4.02
244 245 1.583495 CGTCGAGTACAGGTGCTCCA 61.583 60.000 7.70 0.00 38.81 3.86
245 246 1.136984 CGTCGAGTACAGGTGCTCC 59.863 63.158 11.17 0.00 38.81 4.70
246 247 1.514443 GCGTCGAGTACAGGTGCTC 60.514 63.158 7.37 7.37 38.67 4.26
247 248 2.567049 GCGTCGAGTACAGGTGCT 59.433 61.111 0.00 0.00 0.00 4.40
248 249 2.506438 GGCGTCGAGTACAGGTGC 60.506 66.667 0.00 0.00 0.00 5.01
249 250 0.108804 ATTGGCGTCGAGTACAGGTG 60.109 55.000 0.00 0.00 0.00 4.00
250 251 0.108804 CATTGGCGTCGAGTACAGGT 60.109 55.000 0.00 0.00 0.00 4.00
251 252 1.421410 GCATTGGCGTCGAGTACAGG 61.421 60.000 0.00 0.00 0.00 4.00
252 253 0.735978 TGCATTGGCGTCGAGTACAG 60.736 55.000 0.00 0.00 45.35 2.74
253 254 1.011968 GTGCATTGGCGTCGAGTACA 61.012 55.000 0.00 0.00 45.35 2.90
254 255 1.011968 TGTGCATTGGCGTCGAGTAC 61.012 55.000 0.00 0.00 45.35 2.73
255 256 1.011968 GTGTGCATTGGCGTCGAGTA 61.012 55.000 0.00 0.00 45.35 2.59
256 257 2.030412 TGTGCATTGGCGTCGAGT 59.970 55.556 0.00 0.00 45.35 4.18
257 258 2.476051 GTGTGCATTGGCGTCGAG 59.524 61.111 0.00 0.00 45.35 4.04
258 259 3.047280 GGTGTGCATTGGCGTCGA 61.047 61.111 0.00 0.00 45.35 4.20
259 260 1.365368 TATGGTGTGCATTGGCGTCG 61.365 55.000 0.00 0.00 45.35 5.12
260 261 0.378257 CTATGGTGTGCATTGGCGTC 59.622 55.000 0.00 0.00 45.35 5.19
261 262 1.656818 GCTATGGTGTGCATTGGCGT 61.657 55.000 0.00 0.00 45.35 5.68
262 263 1.064621 GCTATGGTGTGCATTGGCG 59.935 57.895 0.00 0.00 45.35 5.69
263 264 0.101759 CTGCTATGGTGTGCATTGGC 59.898 55.000 0.00 0.00 38.59 4.52
264 265 1.466856 ACTGCTATGGTGTGCATTGG 58.533 50.000 0.00 0.00 38.59 3.16
265 266 4.700268 TTTACTGCTATGGTGTGCATTG 57.300 40.909 0.00 0.00 38.59 2.82
266 267 5.007626 CGTATTTACTGCTATGGTGTGCATT 59.992 40.000 0.00 0.00 38.59 3.56
267 268 4.511454 CGTATTTACTGCTATGGTGTGCAT 59.489 41.667 0.00 0.00 38.59 3.96
268 269 3.868661 CGTATTTACTGCTATGGTGTGCA 59.131 43.478 0.00 0.00 37.63 4.57
269 270 3.303132 GCGTATTTACTGCTATGGTGTGC 60.303 47.826 0.00 0.00 0.00 4.57
270 271 4.025730 CAGCGTATTTACTGCTATGGTGTG 60.026 45.833 6.71 0.00 35.47 3.82
271 272 4.119862 CAGCGTATTTACTGCTATGGTGT 58.880 43.478 6.71 0.00 35.47 4.16
272 273 4.025730 CACAGCGTATTTACTGCTATGGTG 60.026 45.833 6.71 0.00 37.42 4.17
273 274 4.119862 CACAGCGTATTTACTGCTATGGT 58.880 43.478 6.71 1.14 37.42 3.55
274 275 3.059597 GCACAGCGTATTTACTGCTATGG 60.060 47.826 11.73 5.64 37.42 2.74
275 276 3.804325 AGCACAGCGTATTTACTGCTATG 59.196 43.478 7.82 7.82 37.42 2.23
276 277 4.060038 AGCACAGCGTATTTACTGCTAT 57.940 40.909 1.62 0.00 37.42 2.97
277 278 3.520290 AGCACAGCGTATTTACTGCTA 57.480 42.857 1.62 0.00 37.42 3.49
278 279 2.386661 AGCACAGCGTATTTACTGCT 57.613 45.000 0.00 0.00 37.42 4.24
279 280 2.034842 CGTAGCACAGCGTATTTACTGC 60.035 50.000 0.00 0.00 37.42 4.40
280 281 3.818385 CGTAGCACAGCGTATTTACTG 57.182 47.619 0.00 0.00 39.86 2.74
296 297 0.179171 AACGACTCCATGACGCGTAG 60.179 55.000 13.97 8.32 37.34 3.51
297 298 0.179181 GAACGACTCCATGACGCGTA 60.179 55.000 13.97 0.41 37.34 4.42
298 299 1.443872 GAACGACTCCATGACGCGT 60.444 57.895 13.85 13.85 37.34 6.01
299 300 2.497092 CGAACGACTCCATGACGCG 61.497 63.158 3.53 3.53 37.34 6.01
300 301 1.403972 GACGAACGACTCCATGACGC 61.404 60.000 0.00 0.00 37.34 5.19
301 302 0.797249 GGACGAACGACTCCATGACG 60.797 60.000 0.00 0.00 39.53 4.35
302 303 0.242825 TGGACGAACGACTCCATGAC 59.757 55.000 0.00 0.00 31.20 3.06
303 304 0.526211 CTGGACGAACGACTCCATGA 59.474 55.000 6.93 0.00 35.95 3.07
304 305 1.078759 GCTGGACGAACGACTCCATG 61.079 60.000 6.93 0.00 35.95 3.66
305 306 1.215647 GCTGGACGAACGACTCCAT 59.784 57.895 6.93 0.00 35.95 3.41
306 307 0.607217 TAGCTGGACGAACGACTCCA 60.607 55.000 0.00 3.98 35.20 3.86
307 308 0.099082 CTAGCTGGACGAACGACTCC 59.901 60.000 0.00 0.00 0.00 3.85
308 309 0.523757 GCTAGCTGGACGAACGACTC 60.524 60.000 7.70 0.00 0.00 3.36
309 310 1.507174 GCTAGCTGGACGAACGACT 59.493 57.895 7.70 0.00 0.00 4.18
310 311 1.868251 CGCTAGCTGGACGAACGAC 60.868 63.158 13.93 0.00 0.00 4.34
311 312 2.483745 CGCTAGCTGGACGAACGA 59.516 61.111 13.93 0.00 0.00 3.85
312 313 2.579787 CCGCTAGCTGGACGAACG 60.580 66.667 17.40 1.86 0.00 3.95
313 314 2.202756 CCCGCTAGCTGGACGAAC 60.203 66.667 19.74 0.00 0.00 3.95
314 315 2.361992 TCCCGCTAGCTGGACGAA 60.362 61.111 22.64 1.95 0.00 3.85
315 316 2.829003 CTCCCGCTAGCTGGACGA 60.829 66.667 22.64 12.39 0.00 4.20
316 317 4.577246 GCTCCCGCTAGCTGGACG 62.577 72.222 22.64 18.41 39.50 4.79
317 318 4.577246 CGCTCCCGCTAGCTGGAC 62.577 72.222 22.64 17.45 40.49 4.02
337 338 3.948086 GACGGTGTGGACGAGCTCG 62.948 68.421 33.45 33.45 46.33 5.03
338 339 2.126424 GACGGTGTGGACGAGCTC 60.126 66.667 2.73 2.73 34.93 4.09
339 340 4.039357 CGACGGTGTGGACGAGCT 62.039 66.667 0.00 0.00 34.93 4.09
353 354 4.208666 GGACTTATATTTGAGAACGGCGAC 59.791 45.833 16.62 7.38 0.00 5.19
354 355 4.098960 AGGACTTATATTTGAGAACGGCGA 59.901 41.667 16.62 0.00 0.00 5.54
355 356 4.369182 AGGACTTATATTTGAGAACGGCG 58.631 43.478 4.80 4.80 0.00 6.46
356 357 7.964604 ATAAGGACTTATATTTGAGAACGGC 57.035 36.000 2.85 0.00 34.27 5.68
461 462 6.718912 GGTCGTACTCCTTCCCTAAATATAGT 59.281 42.308 0.00 0.00 0.00 2.12
462 463 6.947158 AGGTCGTACTCCTTCCCTAAATATAG 59.053 42.308 1.37 0.00 30.18 1.31
464 465 5.713807 AGGTCGTACTCCTTCCCTAAATAT 58.286 41.667 1.37 0.00 30.18 1.28
469 470 3.686691 GCTAAGGTCGTACTCCTTCCCTA 60.687 52.174 18.17 5.17 43.26 3.53
471 472 1.408340 GCTAAGGTCGTACTCCTTCCC 59.592 57.143 18.17 9.94 43.26 3.97
472 473 2.099427 CAGCTAAGGTCGTACTCCTTCC 59.901 54.545 18.17 12.58 43.26 3.46
473 474 2.754002 ACAGCTAAGGTCGTACTCCTTC 59.246 50.000 18.17 8.89 43.26 3.46
474 475 2.805194 ACAGCTAAGGTCGTACTCCTT 58.195 47.619 18.51 18.51 45.72 3.36
475 476 2.510928 ACAGCTAAGGTCGTACTCCT 57.489 50.000 0.00 1.37 36.81 3.69
535 581 5.705441 GGTTGGTTTGATACAATGACAGAGA 59.295 40.000 0.00 0.00 0.00 3.10
572 618 1.825105 ATCCATGGCATAGGAGTGGT 58.175 50.000 18.88 5.00 37.34 4.16
574 620 5.233083 TCTTAATCCATGGCATAGGAGTG 57.767 43.478 21.15 10.94 37.34 3.51
575 621 5.370880 ACTTCTTAATCCATGGCATAGGAGT 59.629 40.000 18.88 18.50 37.34 3.85
576 622 5.874093 ACTTCTTAATCCATGGCATAGGAG 58.126 41.667 18.88 8.15 37.34 3.69
577 623 5.912149 ACTTCTTAATCCATGGCATAGGA 57.088 39.130 17.18 17.18 38.50 2.94
683 729 7.549488 GCGTGCCTTACCATTTTAGATAGATAT 59.451 37.037 0.00 0.00 0.00 1.63
684 730 6.872020 GCGTGCCTTACCATTTTAGATAGATA 59.128 38.462 0.00 0.00 0.00 1.98
685 731 5.701290 GCGTGCCTTACCATTTTAGATAGAT 59.299 40.000 0.00 0.00 0.00 1.98
686 732 5.054477 GCGTGCCTTACCATTTTAGATAGA 58.946 41.667 0.00 0.00 0.00 1.98
708 756 0.034616 ACTTCAGTCTGGCAGTGAGC 59.965 55.000 15.27 3.89 44.65 4.26
724 772 8.893563 TTTCATTGGGGAGTTCATAATTACTT 57.106 30.769 0.00 0.00 0.00 2.24
785 837 3.251571 GGCACGTTCTTCTACTTGTAGG 58.748 50.000 7.81 0.00 0.00 3.18
827 883 9.077885 GTGGGGAGCTCATCATTTATTTATTTA 57.922 33.333 17.19 0.00 0.00 1.40
835 891 2.439507 GGAGTGGGGAGCTCATCATTTA 59.560 50.000 17.19 0.00 34.83 1.40
839 898 2.060383 CGGAGTGGGGAGCTCATCA 61.060 63.158 17.19 10.07 34.83 3.07
1225 1286 2.121009 GAAGCTTAGAGGCGACGATTC 58.879 52.381 0.00 0.00 37.29 2.52
1232 1293 3.748568 AGAAAAACAGAAGCTTAGAGGCG 59.251 43.478 0.00 0.00 37.29 5.52
1239 1300 7.547019 CAGAAAGGAAAAGAAAAACAGAAGCTT 59.453 33.333 0.00 0.00 0.00 3.74
1350 1415 5.928976 ACAGACAGCATATAGGCACAATTA 58.071 37.500 12.54 0.00 35.83 1.40
1378 1443 0.958382 TCTTCCCCCAAAACGCATCG 60.958 55.000 0.00 0.00 0.00 3.84
1564 1629 6.214412 CCTACATCTCCCCTAATGCTATCTTT 59.786 42.308 0.00 0.00 0.00 2.52
1576 1641 6.047359 ACATCTTAGTATCCTACATCTCCCCT 59.953 42.308 0.00 0.00 0.00 4.79
1656 1724 5.803552 TGAATTTTAAGAATTGCCCCCAAG 58.196 37.500 0.00 0.00 33.80 3.61
1659 1727 5.675684 TCTGAATTTTAAGAATTGCCCCC 57.324 39.130 0.00 0.00 0.00 5.40
1717 1791 5.480642 AAGCAAGATCGACATCTATCCAT 57.519 39.130 0.00 0.00 38.55 3.41
1864 1944 2.228138 TTCGACCACACTTGTACCAC 57.772 50.000 0.00 0.00 0.00 4.16
1904 1984 5.184864 TCACATCCAATTCCCATTGTGTTAC 59.815 40.000 0.00 0.00 38.58 2.50
1939 2019 6.252655 CCAACTGAACTAAACAAAGAAAACGG 59.747 38.462 0.00 0.00 0.00 4.44
2015 2386 9.607988 TTGTCGCAAAATATAGAGAAATAAGGA 57.392 29.630 0.00 0.00 0.00 3.36
2592 2967 3.923017 AGATGGTTTTTCTGAAAGCGG 57.077 42.857 2.75 0.00 0.00 5.52
2634 3009 4.162131 TCCTGAATTCGATGAATCTGACCA 59.838 41.667 0.04 0.00 30.29 4.02
2672 3047 1.321474 TGGCTTCAAGAACAAGGCTG 58.679 50.000 7.42 0.00 44.71 4.85
2779 3154 4.011698 TCAATGGATTCATGGTGTCACAG 58.988 43.478 5.12 0.00 33.18 3.66
3027 3402 4.693095 AGAAAACCTCTTCTGAATTCTCGC 59.307 41.667 7.05 0.00 34.31 5.03
3827 4202 0.321122 CAGTCACCACCTCTGCTTCC 60.321 60.000 0.00 0.00 0.00 3.46
4607 5184 7.937649 ACACTTTACCCATTTCTACTTGTTTC 58.062 34.615 0.00 0.00 0.00 2.78
4881 5460 2.644676 GAGATACTTGGGCCCTTGTTC 58.355 52.381 25.70 18.54 0.00 3.18
5146 5725 2.942306 GCCCAGCTATGTACCCGAAAAA 60.942 50.000 0.00 0.00 0.00 1.94
5231 5810 3.923017 AGCAACCAGTTACAGCATTTC 57.077 42.857 0.00 0.00 0.00 2.17
5271 5850 7.679783 TGATACATATGCTTTATACTGCCACT 58.320 34.615 1.58 0.00 0.00 4.00
5272 5851 7.905604 TGATACATATGCTTTATACTGCCAC 57.094 36.000 1.58 0.00 0.00 5.01
5316 5895 9.507280 CCGACGACTCATTATAAACTTTTACTA 57.493 33.333 0.00 0.00 0.00 1.82
5332 5911 4.418392 GTTTTATCTTAGCCGACGACTCA 58.582 43.478 0.00 0.00 0.00 3.41
5443 6181 6.638873 TGTATTTTAATGTGTTTGTTGGCTCG 59.361 34.615 0.00 0.00 0.00 5.03
5487 6225 8.487028 CAAAGGACTATAAGATGTTCCTAACCT 58.513 37.037 0.00 0.00 0.00 3.50
5488 6226 8.265764 ACAAAGGACTATAAGATGTTCCTAACC 58.734 37.037 0.00 0.00 0.00 2.85
5493 6231 9.886132 TCTTTACAAAGGACTATAAGATGTTCC 57.114 33.333 2.04 0.00 36.67 3.62
5506 6244 9.274206 AGATCACTACTTTTCTTTACAAAGGAC 57.726 33.333 0.00 0.00 35.82 3.85
5556 6294 5.070047 TCCGTCCATTCTAAATTACTCCCTC 59.930 44.000 0.00 0.00 0.00 4.30
5558 6296 5.163332 ACTCCGTCCATTCTAAATTACTCCC 60.163 44.000 0.00 0.00 0.00 4.30
5568 6306 7.068962 TCACATAATGTTACTCCGTCCATTCTA 59.931 37.037 0.00 0.00 0.00 2.10
5569 6307 6.049149 CACATAATGTTACTCCGTCCATTCT 58.951 40.000 0.00 0.00 0.00 2.40
5589 6327 4.214971 GCGGCTGAAATCATATCTTCACAT 59.785 41.667 0.00 0.00 0.00 3.21
5590 6328 3.561310 GCGGCTGAAATCATATCTTCACA 59.439 43.478 0.00 0.00 0.00 3.58
5591 6329 3.812053 AGCGGCTGAAATCATATCTTCAC 59.188 43.478 0.00 0.00 0.00 3.18
5593 6331 3.812053 ACAGCGGCTGAAATCATATCTTC 59.188 43.478 34.70 0.00 35.18 2.87
5594 6332 3.813443 ACAGCGGCTGAAATCATATCTT 58.187 40.909 34.70 6.25 35.18 2.40
5595 6333 3.482156 ACAGCGGCTGAAATCATATCT 57.518 42.857 34.70 6.79 35.18 1.98
5659 6401 1.336440 TGGGTGTTCAATTGACTTGCG 59.664 47.619 7.89 0.00 34.66 4.85
5688 6430 2.771372 TGGATCTGTATTAGGCTGCACA 59.229 45.455 0.50 0.00 0.00 4.57
5719 6461 5.122519 GTTTCAAGGGAAGATTGGCAAAAA 58.877 37.500 3.01 0.00 33.82 1.94
5738 6480 5.793457 CGATTTATTTCGACTGGGTTGTTTC 59.207 40.000 0.00 0.00 41.62 2.78
5760 6502 3.399440 AAAGGATTGCCATTTTTGCGA 57.601 38.095 0.00 0.00 36.29 5.10
5813 6555 1.479709 CCCGACTGACTCCTCTCATT 58.520 55.000 0.00 0.00 0.00 2.57
5869 6611 3.244582 TCCTATTTGCGCCCTATAAGGA 58.755 45.455 4.18 7.09 37.67 3.36
6015 6862 0.860533 CGTTTGGTTTGGCTGCAATG 59.139 50.000 0.50 0.00 0.00 2.82
6063 6910 3.860930 AAATCCTGCGGCCCAACGT 62.861 57.895 0.00 0.00 35.98 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.