Multiple sequence alignment - TraesCS5B01G091200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G091200 chr5B 100.000 6267 0 0 1 6267 118534326 118528060 0.000000e+00 11574.0
1 TraesCS5B01G091200 chr5D 93.679 4683 163 48 1640 6267 108127226 108122622 0.000000e+00 6885.0
2 TraesCS5B01G091200 chr5D 91.176 782 41 12 867 1639 108128348 108127586 0.000000e+00 1037.0
3 TraesCS5B01G091200 chr5D 94.278 367 19 2 499 864 381016774 381017139 1.530000e-155 560.0
4 TraesCS5B01G091200 chr5D 92.442 172 11 2 293 464 108128556 108128387 1.750000e-60 244.0
5 TraesCS5B01G091200 chr5D 92.929 99 4 2 141 238 108128741 108128645 2.360000e-29 141.0
6 TraesCS5B01G091200 chr5D 100.000 28 0 0 456 483 108128405 108128378 1.100000e-02 52.8
7 TraesCS5B01G091200 chr5A 94.316 4504 169 31 1295 5757 111627390 111622933 0.000000e+00 6818.0
8 TraesCS5B01G091200 chr5A 93.763 465 16 4 5783 6247 111622935 111622484 0.000000e+00 686.0
9 TraesCS5B01G091200 chr5A 85.960 349 27 6 141 488 111628118 111627791 2.780000e-93 353.0
10 TraesCS5B01G091200 chr5A 85.674 356 24 6 867 1217 111627751 111627418 3.600000e-92 350.0
11 TraesCS5B01G091200 chr7B 97.003 367 11 0 498 864 118227528 118227894 8.930000e-173 617.0
12 TraesCS5B01G091200 chr7B 99.213 127 1 0 16 142 726369849 726369723 4.890000e-56 230.0
13 TraesCS5B01G091200 chr6B 94.474 380 20 1 492 870 68966687 68967066 9.050000e-163 584.0
14 TraesCS5B01G091200 chr1B 95.148 371 16 2 495 864 644310208 644310577 9.050000e-163 584.0
15 TraesCS5B01G091200 chr4D 94.565 368 19 1 498 864 14974436 14974069 9.120000e-158 568.0
16 TraesCS5B01G091200 chr2D 94.565 368 19 1 498 864 533884320 533883953 9.120000e-158 568.0
17 TraesCS5B01G091200 chr7D 93.867 375 22 1 492 865 10877893 10878267 1.180000e-156 564.0
18 TraesCS5B01G091200 chr6D 93.867 375 22 1 498 871 408657809 408657435 1.180000e-156 564.0
19 TraesCS5B01G091200 chr3D 94.038 369 21 1 499 866 456103779 456103411 5.490000e-155 558.0
20 TraesCS5B01G091200 chr4B 82.371 329 32 15 142 459 227189194 227189507 4.820000e-66 263.0
21 TraesCS5B01G091200 chr1D 97.143 140 4 0 8 147 108103294 108103155 2.920000e-58 237.0
22 TraesCS5B01G091200 chr3B 99.213 127 1 0 16 142 493648664 493648790 4.890000e-56 230.0
23 TraesCS5B01G091200 chr3B 98.450 129 2 0 15 143 416818939 416818811 1.760000e-55 228.0
24 TraesCS5B01G091200 chr4A 97.037 135 4 0 13 147 513375879 513376013 1.760000e-55 228.0
25 TraesCS5B01G091200 chr1A 98.425 127 2 0 16 142 213289518 213289392 2.270000e-54 224.0
26 TraesCS5B01G091200 chr3A 95.035 141 7 0 3 143 523170850 523170990 8.180000e-54 222.0
27 TraesCS5B01G091200 chr2B 95.070 142 6 1 1 142 21749442 21749582 8.180000e-54 222.0
28 TraesCS5B01G091200 chr2A 94.483 145 7 1 3 146 440365560 440365416 8.180000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G091200 chr5B 118528060 118534326 6266 True 11574.00 11574 100.00000 1 6267 1 chr5B.!!$R1 6266
1 TraesCS5B01G091200 chr5D 108122622 108128741 6119 True 1671.96 6885 94.04520 141 6267 5 chr5D.!!$R1 6126
2 TraesCS5B01G091200 chr5A 111622484 111628118 5634 True 2051.75 6818 89.92825 141 6247 4 chr5A.!!$R1 6106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
593 652 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.0 0.00 0.00 0.00 6.13 F
1426 1509 0.028505 GGTATGCACGCATCTGCTTG 59.971 55.0 7.99 4.44 42.38 4.01 F
1612 1697 0.108472 GGAGGAGCCAAATTTGCTGC 60.108 55.0 19.12 19.12 46.29 5.25 F
2495 2942 0.320683 GGCCATTGCTCCAACCAAAC 60.321 55.0 0.00 0.00 37.74 2.93 F
3858 4314 0.669619 TCCGTCAAAGTACGCACAGA 59.330 50.0 0.00 0.00 41.51 3.41 F
4722 5200 0.260816 AGGAGTCACCGGCTATACCA 59.739 55.0 0.00 0.00 44.74 3.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1437 1520 0.387622 CACAATGCCAGGCAAAGACG 60.388 55.000 20.84 7.78 43.62 4.18 R
2667 3114 0.394352 CCAACCCAGGTATGTGAGCC 60.394 60.000 0.00 0.00 0.00 4.70 R
2711 3163 1.258445 TTCTCCCTCTCAGGAACGCC 61.258 60.000 0.00 0.00 37.67 5.68 R
4049 4505 2.152830 GGCAGCAGATCATCAATCTCC 58.847 52.381 0.00 0.00 43.13 3.71 R
5132 5610 0.038744 CTTCACCCAGCTTGGATGGT 59.961 55.000 11.55 0.00 40.96 3.55 R
5781 6280 0.610232 AAGCATGGGACTCAAGGCAC 60.610 55.000 5.29 0.00 33.77 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.627298 GAAAACCTAGAAAAATACTCCCTCC 57.373 40.000 0.00 0.00 0.00 4.30
25 26 5.354842 AACCTAGAAAAATACTCCCTCCG 57.645 43.478 0.00 0.00 0.00 4.63
26 27 4.359996 ACCTAGAAAAATACTCCCTCCGT 58.640 43.478 0.00 0.00 0.00 4.69
27 28 4.781621 ACCTAGAAAAATACTCCCTCCGTT 59.218 41.667 0.00 0.00 0.00 4.44
28 29 5.105023 ACCTAGAAAAATACTCCCTCCGTTC 60.105 44.000 0.00 0.00 0.00 3.95
29 30 4.217836 AGAAAAATACTCCCTCCGTTCC 57.782 45.455 0.00 0.00 0.00 3.62
30 31 2.685850 AAAATACTCCCTCCGTTCCG 57.314 50.000 0.00 0.00 0.00 4.30
31 32 1.856629 AAATACTCCCTCCGTTCCGA 58.143 50.000 0.00 0.00 0.00 4.55
32 33 1.856629 AATACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
33 34 2.083628 ATACTCCCTCCGTTCCGAAT 57.916 50.000 0.00 0.00 0.00 3.34
34 35 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
35 36 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
36 37 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
37 38 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
38 39 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
39 40 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
40 41 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
41 42 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
42 43 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
43 44 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
44 45 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
45 46 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
46 47 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
47 48 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
48 49 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
49 50 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
50 51 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
51 52 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
52 53 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
53 54 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
54 55 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
55 56 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
56 57 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
57 58 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
59 60 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
60 61 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
61 62 8.037758 ACTTGTCTTGGATTTGTCTAGATACAG 58.962 37.037 0.00 0.00 0.00 2.74
62 63 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
63 64 8.311395 TGTCTTGGATTTGTCTAGATACAGAT 57.689 34.615 0.00 0.00 0.00 2.90
64 65 8.200120 TGTCTTGGATTTGTCTAGATACAGATG 58.800 37.037 0.00 0.00 0.00 2.90
65 66 8.200792 GTCTTGGATTTGTCTAGATACAGATGT 58.799 37.037 0.00 0.00 0.00 3.06
66 67 9.421399 TCTTGGATTTGTCTAGATACAGATGTA 57.579 33.333 0.00 0.00 34.67 2.29
85 86 9.190858 CAGATGTATCTAGACTCATTTTAGTGC 57.809 37.037 11.25 0.69 34.85 4.40
86 87 9.142014 AGATGTATCTAGACTCATTTTAGTGCT 57.858 33.333 11.25 2.44 34.85 4.40
89 90 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
93 94 9.628500 TCTAGACTCATTTTAGTGCTAGATACA 57.372 33.333 0.00 0.00 34.69 2.29
96 97 8.364142 AGACTCATTTTAGTGCTAGATACATCC 58.636 37.037 0.00 0.00 0.00 3.51
97 98 8.023021 ACTCATTTTAGTGCTAGATACATCCA 57.977 34.615 0.00 0.00 0.00 3.41
98 99 8.654997 ACTCATTTTAGTGCTAGATACATCCAT 58.345 33.333 0.00 0.00 0.00 3.41
128 129 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
129 130 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
130 131 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
131 132 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
180 181 1.787462 AAGCTGCTTGGCTCCTTCCT 61.787 55.000 15.16 0.00 42.24 3.36
220 222 1.375268 GCTGGACTGGCACTCACTC 60.375 63.158 0.00 0.00 0.00 3.51
221 223 1.825281 GCTGGACTGGCACTCACTCT 61.825 60.000 0.00 0.00 0.00 3.24
242 244 4.399395 CTTCCAGCGCCAGAGCCA 62.399 66.667 2.29 0.00 38.01 4.75
243 245 4.399395 TTCCAGCGCCAGAGCCAG 62.399 66.667 2.29 0.00 38.01 4.85
246 248 4.383861 CAGCGCCAGAGCCAGTGA 62.384 66.667 2.29 0.00 38.01 3.41
247 249 3.630013 AGCGCCAGAGCCAGTGAA 61.630 61.111 2.29 0.00 38.01 3.18
248 250 2.437359 GCGCCAGAGCCAGTGAAT 60.437 61.111 0.00 0.00 34.57 2.57
249 251 1.153369 GCGCCAGAGCCAGTGAATA 60.153 57.895 0.00 0.00 34.57 1.75
250 252 1.432270 GCGCCAGAGCCAGTGAATAC 61.432 60.000 0.00 0.00 34.57 1.89
251 253 1.148157 CGCCAGAGCCAGTGAATACG 61.148 60.000 0.00 0.00 34.57 3.06
252 254 0.108138 GCCAGAGCCAGTGAATACGT 60.108 55.000 0.00 0.00 0.00 3.57
253 255 1.136305 GCCAGAGCCAGTGAATACGTA 59.864 52.381 0.00 0.00 0.00 3.57
254 256 2.799917 GCCAGAGCCAGTGAATACGTAG 60.800 54.545 0.08 0.00 0.00 3.51
286 288 0.250858 CCACCCAGAGCACATGTCAA 60.251 55.000 0.00 0.00 0.00 3.18
287 289 1.615116 CCACCCAGAGCACATGTCAAT 60.615 52.381 0.00 0.00 0.00 2.57
291 293 4.036027 CACCCAGAGCACATGTCAATAATC 59.964 45.833 0.00 0.00 0.00 1.75
296 355 5.063817 CAGAGCACATGTCAATAATCGTTCA 59.936 40.000 0.00 0.00 0.00 3.18
302 361 5.182950 ACATGTCAATAATCGTTCAGGCAAA 59.817 36.000 0.00 0.00 0.00 3.68
310 369 7.992180 ATAATCGTTCAGGCAAAATCAATTC 57.008 32.000 0.00 0.00 0.00 2.17
317 376 5.867330 TCAGGCAAAATCAATTCCATGTTT 58.133 33.333 0.00 0.00 0.00 2.83
331 390 4.710324 TCCATGTTTTCGTCTTGGTAACT 58.290 39.130 0.00 0.00 33.61 2.24
333 392 5.008217 TCCATGTTTTCGTCTTGGTAACTTG 59.992 40.000 0.00 0.00 33.61 3.16
341 400 3.303526 CGTCTTGGTAACTTGTTTTCCCG 60.304 47.826 0.00 0.00 37.61 5.14
364 423 4.272748 GTGGTGGTAGTCAAACTCAAGAAC 59.727 45.833 0.00 0.00 0.00 3.01
385 444 4.787551 ACATTTGACCAACACAAGTCCTA 58.212 39.130 0.00 0.00 31.76 2.94
387 446 5.299279 ACATTTGACCAACACAAGTCCTAAG 59.701 40.000 0.00 0.00 31.76 2.18
396 455 4.235360 ACACAAGTCCTAAGAACGAATCG 58.765 43.478 0.00 0.00 0.00 3.34
455 514 0.112606 ACCGTCAAGAGGAGAGGACA 59.887 55.000 0.00 0.00 0.00 4.02
456 515 0.814457 CCGTCAAGAGGAGAGGACAG 59.186 60.000 0.00 0.00 0.00 3.51
457 516 0.814457 CGTCAAGAGGAGAGGACAGG 59.186 60.000 0.00 0.00 0.00 4.00
458 517 1.614583 CGTCAAGAGGAGAGGACAGGA 60.615 57.143 0.00 0.00 0.00 3.86
459 518 2.099405 GTCAAGAGGAGAGGACAGGAG 58.901 57.143 0.00 0.00 0.00 3.69
484 543 6.557568 AGGACAGGATAGGATTTAGGACTAG 58.442 44.000 0.00 0.00 0.00 2.57
488 547 7.479579 ACAGGATAGGATTTAGGACTAGCATA 58.520 38.462 0.00 0.00 0.00 3.14
489 548 8.125733 ACAGGATAGGATTTAGGACTAGCATAT 58.874 37.037 0.00 0.00 0.00 1.78
490 549 8.637986 CAGGATAGGATTTAGGACTAGCATATC 58.362 40.741 0.00 0.00 0.00 1.63
491 550 8.573975 AGGATAGGATTTAGGACTAGCATATCT 58.426 37.037 0.00 0.00 0.00 1.98
492 551 9.207868 GGATAGGATTTAGGACTAGCATATCTT 57.792 37.037 0.00 0.00 0.00 2.40
497 556 7.332182 GGATTTAGGACTAGCATATCTTTTCCG 59.668 40.741 0.00 0.00 32.49 4.30
498 557 4.608948 AGGACTAGCATATCTTTTCCGG 57.391 45.455 0.00 0.00 32.49 5.14
499 558 3.067833 GGACTAGCATATCTTTTCCGGC 58.932 50.000 0.00 0.00 0.00 6.13
500 559 3.494398 GGACTAGCATATCTTTTCCGGCA 60.494 47.826 0.00 0.00 0.00 5.69
501 560 4.127171 GACTAGCATATCTTTTCCGGCAA 58.873 43.478 0.00 0.00 0.00 4.52
502 561 4.523083 ACTAGCATATCTTTTCCGGCAAA 58.477 39.130 0.00 0.00 0.00 3.68
503 562 5.133221 ACTAGCATATCTTTTCCGGCAAAT 58.867 37.500 0.00 0.00 0.00 2.32
504 563 5.594317 ACTAGCATATCTTTTCCGGCAAATT 59.406 36.000 0.00 0.00 0.00 1.82
505 564 5.343307 AGCATATCTTTTCCGGCAAATTT 57.657 34.783 0.00 0.00 0.00 1.82
506 565 5.111293 AGCATATCTTTTCCGGCAAATTTG 58.889 37.500 14.03 14.03 0.00 2.32
507 566 5.105392 AGCATATCTTTTCCGGCAAATTTGA 60.105 36.000 22.31 0.00 0.00 2.69
508 567 5.005682 GCATATCTTTTCCGGCAAATTTGAC 59.994 40.000 22.31 18.50 0.00 3.18
510 569 4.392921 TCTTTTCCGGCAAATTTGACAA 57.607 36.364 23.49 8.68 35.35 3.18
511 570 4.759782 TCTTTTCCGGCAAATTTGACAAA 58.240 34.783 23.49 14.11 35.35 2.83
512 571 4.568760 TCTTTTCCGGCAAATTTGACAAAC 59.431 37.500 23.49 4.64 35.35 2.93
513 572 3.810310 TTCCGGCAAATTTGACAAACT 57.190 38.095 23.49 0.00 35.35 2.66
514 573 3.810310 TCCGGCAAATTTGACAAACTT 57.190 38.095 23.49 0.00 35.35 2.66
515 574 3.452474 TCCGGCAAATTTGACAAACTTG 58.548 40.909 23.49 15.87 35.35 3.16
516 575 3.131223 TCCGGCAAATTTGACAAACTTGA 59.869 39.130 22.55 6.99 35.35 3.02
517 576 3.245048 CCGGCAAATTTGACAAACTTGAC 59.755 43.478 22.55 19.47 35.35 3.18
518 577 3.245048 CGGCAAATTTGACAAACTTGACC 59.755 43.478 22.55 19.84 35.35 4.02
519 578 4.441792 GGCAAATTTGACAAACTTGACCT 58.558 39.130 22.55 0.00 35.83 3.85
520 579 5.596845 GGCAAATTTGACAAACTTGACCTA 58.403 37.500 22.55 0.00 35.83 3.08
521 580 6.223120 GGCAAATTTGACAAACTTGACCTAT 58.777 36.000 22.55 0.00 35.83 2.57
522 581 7.375053 GGCAAATTTGACAAACTTGACCTATA 58.625 34.615 22.55 0.00 35.83 1.31
523 582 7.542130 GGCAAATTTGACAAACTTGACCTATAG 59.458 37.037 22.55 0.00 35.83 1.31
524 583 8.296713 GCAAATTTGACAAACTTGACCTATAGA 58.703 33.333 22.55 0.00 0.00 1.98
525 584 9.612620 CAAATTTGACAAACTTGACCTATAGAC 57.387 33.333 15.26 0.00 0.00 2.59
526 585 7.596749 ATTTGACAAACTTGACCTATAGACG 57.403 36.000 1.94 0.00 0.00 4.18
527 586 5.068234 TGACAAACTTGACCTATAGACGG 57.932 43.478 0.00 0.00 0.00 4.79
528 587 4.768448 TGACAAACTTGACCTATAGACGGA 59.232 41.667 0.00 0.00 0.00 4.69
529 588 5.244402 TGACAAACTTGACCTATAGACGGAA 59.756 40.000 0.00 0.00 0.00 4.30
530 589 6.070995 TGACAAACTTGACCTATAGACGGAAT 60.071 38.462 0.00 0.00 0.00 3.01
531 590 6.338937 ACAAACTTGACCTATAGACGGAATC 58.661 40.000 0.00 0.00 0.00 2.52
532 591 6.070995 ACAAACTTGACCTATAGACGGAATCA 60.071 38.462 0.00 0.00 0.00 2.57
533 592 6.540438 AACTTGACCTATAGACGGAATCAA 57.460 37.500 0.00 1.31 0.00 2.57
534 593 6.540438 ACTTGACCTATAGACGGAATCAAA 57.460 37.500 0.00 0.00 0.00 2.69
535 594 7.125792 ACTTGACCTATAGACGGAATCAAAT 57.874 36.000 0.00 0.00 0.00 2.32
536 595 7.210873 ACTTGACCTATAGACGGAATCAAATC 58.789 38.462 0.00 0.00 0.00 2.17
537 596 6.724893 TGACCTATAGACGGAATCAAATCA 57.275 37.500 0.00 0.00 0.00 2.57
538 597 6.513180 TGACCTATAGACGGAATCAAATCAC 58.487 40.000 0.00 0.00 0.00 3.06
539 598 6.097696 TGACCTATAGACGGAATCAAATCACA 59.902 38.462 0.00 0.00 0.00 3.58
540 599 6.516718 ACCTATAGACGGAATCAAATCACAG 58.483 40.000 0.00 0.00 0.00 3.66
541 600 6.323996 ACCTATAGACGGAATCAAATCACAGA 59.676 38.462 0.00 0.00 0.00 3.41
542 601 7.147724 ACCTATAGACGGAATCAAATCACAGAA 60.148 37.037 0.00 0.00 0.00 3.02
543 602 7.875041 CCTATAGACGGAATCAAATCACAGAAT 59.125 37.037 0.00 0.00 0.00 2.40
544 603 9.914131 CTATAGACGGAATCAAATCACAGAATA 57.086 33.333 0.00 0.00 0.00 1.75
546 605 7.308782 AGACGGAATCAAATCACAGAATAAC 57.691 36.000 0.00 0.00 0.00 1.89
547 606 6.316390 AGACGGAATCAAATCACAGAATAACC 59.684 38.462 0.00 0.00 0.00 2.85
548 607 6.180472 ACGGAATCAAATCACAGAATAACCT 58.820 36.000 0.00 0.00 0.00 3.50
549 608 7.335627 ACGGAATCAAATCACAGAATAACCTA 58.664 34.615 0.00 0.00 0.00 3.08
550 609 7.993183 ACGGAATCAAATCACAGAATAACCTAT 59.007 33.333 0.00 0.00 0.00 2.57
551 610 8.499162 CGGAATCAAATCACAGAATAACCTATC 58.501 37.037 0.00 0.00 0.00 2.08
552 611 8.787852 GGAATCAAATCACAGAATAACCTATCC 58.212 37.037 0.00 0.00 0.00 2.59
553 612 7.969536 ATCAAATCACAGAATAACCTATCCG 57.030 36.000 0.00 0.00 0.00 4.18
554 613 6.884832 TCAAATCACAGAATAACCTATCCGT 58.115 36.000 0.00 0.00 0.00 4.69
555 614 6.761242 TCAAATCACAGAATAACCTATCCGTG 59.239 38.462 0.00 0.00 0.00 4.94
556 615 6.479972 AATCACAGAATAACCTATCCGTGA 57.520 37.500 0.00 0.00 36.65 4.35
557 616 5.925506 TCACAGAATAACCTATCCGTGAA 57.074 39.130 0.00 0.00 0.00 3.18
558 617 6.288941 TCACAGAATAACCTATCCGTGAAA 57.711 37.500 0.00 0.00 0.00 2.69
559 618 6.103997 TCACAGAATAACCTATCCGTGAAAC 58.896 40.000 0.00 0.00 0.00 2.78
560 619 6.070995 TCACAGAATAACCTATCCGTGAAACT 60.071 38.462 0.00 0.00 31.75 2.66
561 620 7.123098 TCACAGAATAACCTATCCGTGAAACTA 59.877 37.037 0.00 0.00 31.75 2.24
562 621 7.926555 CACAGAATAACCTATCCGTGAAACTAT 59.073 37.037 0.00 0.00 31.75 2.12
563 622 8.483758 ACAGAATAACCTATCCGTGAAACTATT 58.516 33.333 0.00 0.00 31.75 1.73
564 623 9.326413 CAGAATAACCTATCCGTGAAACTATTT 57.674 33.333 0.00 0.00 31.75 1.40
565 624 9.543783 AGAATAACCTATCCGTGAAACTATTTC 57.456 33.333 0.00 0.00 40.08 2.17
566 625 9.321562 GAATAACCTATCCGTGAAACTATTTCA 57.678 33.333 0.00 0.00 46.68 2.69
573 632 1.803334 TGAAACTATTTCACGCGGCT 58.197 45.000 12.47 0.00 44.21 5.52
574 633 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
575 634 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
576 635 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
577 636 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
578 637 0.460284 CTATTTCACGCGGCTGACCT 60.460 55.000 12.47 0.00 0.00 3.85
579 638 0.036765 TATTTCACGCGGCTGACCTT 60.037 50.000 12.47 0.00 0.00 3.50
580 639 0.889186 ATTTCACGCGGCTGACCTTT 60.889 50.000 12.47 0.00 0.00 3.11
581 640 1.098712 TTTCACGCGGCTGACCTTTT 61.099 50.000 12.47 0.00 0.00 2.27
582 641 1.098712 TTCACGCGGCTGACCTTTTT 61.099 50.000 12.47 0.00 0.00 1.94
583 642 1.370414 CACGCGGCTGACCTTTTTG 60.370 57.895 12.47 0.00 0.00 2.44
584 643 1.822186 ACGCGGCTGACCTTTTTGT 60.822 52.632 12.47 0.00 0.00 2.83
585 644 1.370414 CGCGGCTGACCTTTTTGTG 60.370 57.895 0.00 0.00 0.00 3.33
586 645 1.733526 GCGGCTGACCTTTTTGTGT 59.266 52.632 0.00 0.00 0.00 3.72
587 646 0.594796 GCGGCTGACCTTTTTGTGTG 60.595 55.000 0.00 0.00 0.00 3.82
588 647 1.021202 CGGCTGACCTTTTTGTGTGA 58.979 50.000 0.00 0.00 0.00 3.58
589 648 1.268539 CGGCTGACCTTTTTGTGTGAC 60.269 52.381 0.00 0.00 0.00 3.67
590 649 1.268539 GGCTGACCTTTTTGTGTGACG 60.269 52.381 0.00 0.00 0.00 4.35
591 650 1.859998 GCTGACCTTTTTGTGTGACGC 60.860 52.381 0.00 0.00 0.00 5.19
592 651 0.736053 TGACCTTTTTGTGTGACGCC 59.264 50.000 0.00 0.00 0.00 5.68
593 652 0.030235 GACCTTTTTGTGTGACGCCC 59.970 55.000 0.00 0.00 0.00 6.13
594 653 1.008995 CCTTTTTGTGTGACGCCCG 60.009 57.895 0.00 0.00 0.00 6.13
595 654 1.440938 CCTTTTTGTGTGACGCCCGA 61.441 55.000 0.00 0.00 0.00 5.14
596 655 0.316689 CTTTTTGTGTGACGCCCGAC 60.317 55.000 0.00 0.00 0.00 4.79
597 656 1.025113 TTTTTGTGTGACGCCCGACA 61.025 50.000 0.00 0.00 0.00 4.35
598 657 1.707239 TTTTGTGTGACGCCCGACAC 61.707 55.000 14.47 14.47 42.40 3.67
599 658 4.934942 TGTGTGACGCCCGACACG 62.935 66.667 15.80 0.00 44.55 4.49
600 659 4.634133 GTGTGACGCCCGACACGA 62.634 66.667 15.80 5.46 42.06 4.35
601 660 3.902086 TGTGACGCCCGACACGAA 61.902 61.111 15.80 0.31 42.06 3.85
602 661 3.103911 GTGACGCCCGACACGAAG 61.104 66.667 7.43 0.00 32.16 3.79
603 662 4.351938 TGACGCCCGACACGAAGG 62.352 66.667 0.00 0.00 0.00 3.46
611 670 3.712881 GACACGAAGGCGCCACAC 61.713 66.667 31.54 17.81 42.48 3.82
612 671 4.235762 ACACGAAGGCGCCACACT 62.236 61.111 31.54 9.96 42.48 3.55
613 672 2.048597 CACGAAGGCGCCACACTA 60.049 61.111 31.54 0.00 42.48 2.74
614 673 2.048503 ACGAAGGCGCCACACTAC 60.049 61.111 31.54 11.50 42.48 2.73
615 674 2.048597 CGAAGGCGCCACACTACA 60.049 61.111 31.54 0.00 0.00 2.74
616 675 2.380410 CGAAGGCGCCACACTACAC 61.380 63.158 31.54 8.98 0.00 2.90
617 676 1.004918 GAAGGCGCCACACTACACT 60.005 57.895 31.54 0.00 0.00 3.55
618 677 1.291877 GAAGGCGCCACACTACACTG 61.292 60.000 31.54 0.00 0.00 3.66
619 678 2.030562 GGCGCCACACTACACTGT 59.969 61.111 24.80 0.00 0.00 3.55
620 679 2.317609 GGCGCCACACTACACTGTG 61.318 63.158 24.80 6.19 41.19 3.66
621 680 2.954753 GCGCCACACTACACTGTGC 61.955 63.158 7.90 0.00 40.33 4.57
622 681 1.594021 CGCCACACTACACTGTGCA 60.594 57.895 7.90 0.00 40.33 4.57
623 682 1.157257 CGCCACACTACACTGTGCAA 61.157 55.000 7.90 0.00 40.33 4.08
624 683 0.307760 GCCACACTACACTGTGCAAC 59.692 55.000 7.90 0.00 40.33 4.17
625 684 0.581529 CCACACTACACTGTGCAACG 59.418 55.000 7.90 0.00 42.39 4.10
626 685 0.042188 CACACTACACTGTGCAACGC 60.042 55.000 7.90 0.00 42.39 4.84
627 686 1.157870 ACACTACACTGTGCAACGCC 61.158 55.000 7.90 0.00 42.39 5.68
628 687 0.880278 CACTACACTGTGCAACGCCT 60.880 55.000 7.90 0.00 42.39 5.52
629 688 0.600255 ACTACACTGTGCAACGCCTC 60.600 55.000 7.90 0.00 42.39 4.70
630 689 1.617755 CTACACTGTGCAACGCCTCG 61.618 60.000 7.90 0.00 42.39 4.63
631 690 4.374702 CACTGTGCAACGCCTCGC 62.375 66.667 0.00 0.00 42.39 5.03
632 691 4.908687 ACTGTGCAACGCCTCGCA 62.909 61.111 0.00 0.00 42.39 5.10
633 692 4.081030 CTGTGCAACGCCTCGCAG 62.081 66.667 0.00 0.00 42.39 5.18
634 693 4.600576 TGTGCAACGCCTCGCAGA 62.601 61.111 0.00 0.00 42.39 4.26
635 694 3.121030 GTGCAACGCCTCGCAGAT 61.121 61.111 0.00 0.00 39.20 2.90
636 695 1.809619 GTGCAACGCCTCGCAGATA 60.810 57.895 0.00 0.00 39.20 1.98
637 696 1.519234 TGCAACGCCTCGCAGATAG 60.519 57.895 0.00 0.00 33.89 2.08
638 697 2.240500 GCAACGCCTCGCAGATAGG 61.241 63.158 0.00 0.00 33.89 2.57
647 706 4.345337 GCAGATAGGCGCTACACC 57.655 61.111 7.64 0.00 0.00 4.16
648 707 1.661821 GCAGATAGGCGCTACACCG 60.662 63.158 7.64 0.00 0.00 4.94
683 742 7.956420 ACACGTGTGATCAGAAAATTACTAA 57.044 32.000 22.71 0.00 0.00 2.24
684 743 8.018677 ACACGTGTGATCAGAAAATTACTAAG 57.981 34.615 22.71 0.00 0.00 2.18
685 744 7.656137 ACACGTGTGATCAGAAAATTACTAAGT 59.344 33.333 22.71 0.00 0.00 2.24
686 745 8.162880 CACGTGTGATCAGAAAATTACTAAGTC 58.837 37.037 7.58 0.00 0.00 3.01
687 746 7.061905 ACGTGTGATCAGAAAATTACTAAGTCG 59.938 37.037 0.00 0.00 0.00 4.18
688 747 7.061905 CGTGTGATCAGAAAATTACTAAGTCGT 59.938 37.037 0.00 0.00 0.00 4.34
689 748 8.162880 GTGTGATCAGAAAATTACTAAGTCGTG 58.837 37.037 0.00 0.00 0.00 4.35
690 749 7.870954 TGTGATCAGAAAATTACTAAGTCGTGT 59.129 33.333 0.00 0.00 0.00 4.49
691 750 8.162880 GTGATCAGAAAATTACTAAGTCGTGTG 58.837 37.037 0.00 0.00 0.00 3.82
692 751 6.462073 TCAGAAAATTACTAAGTCGTGTGC 57.538 37.500 0.00 0.00 0.00 4.57
693 752 5.986741 TCAGAAAATTACTAAGTCGTGTGCA 59.013 36.000 0.00 0.00 0.00 4.57
694 753 6.145534 TCAGAAAATTACTAAGTCGTGTGCAG 59.854 38.462 0.00 0.00 0.00 4.41
695 754 4.663636 AAATTACTAAGTCGTGTGCAGC 57.336 40.909 0.00 0.00 0.00 5.25
696 755 1.693467 TTACTAAGTCGTGTGCAGCG 58.307 50.000 4.41 4.41 0.00 5.18
697 756 0.731514 TACTAAGTCGTGTGCAGCGC 60.732 55.000 0.00 0.00 0.00 5.92
698 757 2.730672 CTAAGTCGTGTGCAGCGCC 61.731 63.158 2.29 0.00 0.00 6.53
699 758 3.220999 TAAGTCGTGTGCAGCGCCT 62.221 57.895 2.29 0.00 0.00 5.52
704 763 3.117171 GTGTGCAGCGCCTGAGAG 61.117 66.667 2.29 0.00 32.44 3.20
714 773 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
715 774 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
716 775 2.679996 TGAGAGCTAGGCGCCACA 60.680 61.111 31.54 15.42 40.39 4.17
717 776 2.202810 GAGAGCTAGGCGCCACAC 60.203 66.667 31.54 17.11 40.39 3.82
718 777 2.681778 AGAGCTAGGCGCCACACT 60.682 61.111 31.54 21.99 40.39 3.55
719 778 1.379977 AGAGCTAGGCGCCACACTA 60.380 57.895 31.54 11.42 40.39 2.74
720 779 0.757188 AGAGCTAGGCGCCACACTAT 60.757 55.000 31.54 16.52 40.39 2.12
721 780 0.959553 GAGCTAGGCGCCACACTATA 59.040 55.000 31.54 10.17 40.39 1.31
722 781 0.674534 AGCTAGGCGCCACACTATAC 59.325 55.000 31.54 8.64 40.39 1.47
723 782 0.387929 GCTAGGCGCCACACTATACA 59.612 55.000 31.54 0.33 0.00 2.29
724 783 1.603172 GCTAGGCGCCACACTATACAG 60.603 57.143 31.54 11.37 0.00 2.74
725 784 1.681793 CTAGGCGCCACACTATACAGT 59.318 52.381 31.54 5.27 34.42 3.55
736 795 4.148563 CACTATACAGTGTAGCGCCTAG 57.851 50.000 2.29 7.59 46.03 3.02
737 796 2.553172 ACTATACAGTGTAGCGCCTAGC 59.447 50.000 2.29 0.00 38.99 3.42
738 797 3.748027 ACTATACAGTGTAGCGCCTAGCT 60.748 47.826 2.29 0.00 46.39 3.32
739 798 5.572865 ACTATACAGTGTAGCGCCTAGCTC 61.573 50.000 2.29 0.00 43.12 4.09
750 809 1.068250 CCTAGCTCCTAGGCGTTGC 59.932 63.158 2.96 5.87 45.64 4.17
751 810 1.676678 CCTAGCTCCTAGGCGTTGCA 61.677 60.000 2.96 0.00 45.64 4.08
752 811 0.528684 CTAGCTCCTAGGCGTTGCAC 60.529 60.000 2.96 0.00 37.29 4.57
753 812 0.970937 TAGCTCCTAGGCGTTGCACT 60.971 55.000 2.96 0.00 37.29 4.40
754 813 0.970937 AGCTCCTAGGCGTTGCACTA 60.971 55.000 2.96 0.00 37.29 2.74
755 814 0.528684 GCTCCTAGGCGTTGCACTAG 60.529 60.000 2.96 2.78 37.12 2.57
756 815 0.818296 CTCCTAGGCGTTGCACTAGT 59.182 55.000 2.96 0.00 35.93 2.57
757 816 0.530744 TCCTAGGCGTTGCACTAGTG 59.469 55.000 18.93 18.93 35.93 2.74
767 826 2.262603 CACTAGTGCAGCGCCTGA 59.737 61.111 10.54 0.00 32.44 3.86
768 827 1.808799 CACTAGTGCAGCGCCTGAG 60.809 63.158 10.54 0.34 32.44 3.35
769 828 1.979155 ACTAGTGCAGCGCCTGAGA 60.979 57.895 2.29 0.00 32.44 3.27
770 829 1.226916 CTAGTGCAGCGCCTGAGAG 60.227 63.158 2.29 0.00 32.44 3.20
771 830 3.362399 TAGTGCAGCGCCTGAGAGC 62.362 63.158 2.29 0.00 39.42 4.09
780 839 3.150335 CCTGAGAGCTAGGCGCCA 61.150 66.667 31.54 14.00 40.39 5.69
781 840 2.105930 CTGAGAGCTAGGCGCCAC 59.894 66.667 31.54 17.93 40.39 5.01
782 841 3.764810 CTGAGAGCTAGGCGCCACG 62.765 68.421 31.54 19.97 40.39 4.94
783 842 4.577246 GAGAGCTAGGCGCCACGG 62.577 72.222 31.54 18.60 40.39 4.94
788 847 4.514577 CTAGGCGCCACGGGTCAG 62.515 72.222 31.54 9.46 0.00 3.51
799 858 2.746277 GGGTCAGCCGCGTGAAAT 60.746 61.111 4.92 0.00 34.97 2.17
800 859 1.448893 GGGTCAGCCGCGTGAAATA 60.449 57.895 4.92 0.00 34.97 1.40
801 860 1.429148 GGGTCAGCCGCGTGAAATAG 61.429 60.000 4.92 0.00 34.97 1.73
802 861 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
803 862 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
804 863 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
805 864 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
806 865 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
824 883 9.784531 ATAGTTTCAGGGATAGTTCATTATGTG 57.215 33.333 0.00 0.00 0.00 3.21
825 884 7.861629 AGTTTCAGGGATAGTTCATTATGTGA 58.138 34.615 0.00 0.00 34.25 3.58
826 885 8.497745 AGTTTCAGGGATAGTTCATTATGTGAT 58.502 33.333 0.00 0.00 36.54 3.06
827 886 9.125026 GTTTCAGGGATAGTTCATTATGTGATT 57.875 33.333 0.00 0.00 36.54 2.57
828 887 9.699410 TTTCAGGGATAGTTCATTATGTGATTT 57.301 29.630 0.00 0.00 36.54 2.17
873 932 4.140536 TGTCAAATTTGCCATTTTTCCCC 58.859 39.130 13.54 0.00 0.00 4.81
893 966 3.006967 CCCTTGATCCCGTCGATAATCTT 59.993 47.826 0.00 0.00 0.00 2.40
896 969 3.227614 TGATCCCGTCGATAATCTTCCA 58.772 45.455 0.00 0.00 0.00 3.53
902 975 3.494626 CCGTCGATAATCTTCCATTGTGG 59.505 47.826 0.00 0.00 39.43 4.17
921 994 4.764823 TGTGGCAGGAAATTGGTTTAGTAG 59.235 41.667 0.00 0.00 0.00 2.57
922 995 4.765339 GTGGCAGGAAATTGGTTTAGTAGT 59.235 41.667 0.00 0.00 0.00 2.73
933 1006 8.426569 AATTGGTTTAGTAGTACCAGACAGTA 57.573 34.615 0.00 0.00 44.68 2.74
934 1007 7.838079 TTGGTTTAGTAGTACCAGACAGTAA 57.162 36.000 0.00 0.00 44.68 2.24
987 1065 5.693104 GTCTATATAGCCGTCCTCTATCTCG 59.307 48.000 4.75 0.00 0.00 4.04
1061 1139 4.186433 CTCGCTCGCTCGCTTCCT 62.186 66.667 0.00 0.00 0.00 3.36
1062 1140 4.180946 TCGCTCGCTCGCTTCCTC 62.181 66.667 0.00 0.00 0.00 3.71
1119 1201 3.090765 CTTGTAGCCTTGGCCCCT 58.909 61.111 8.17 0.00 0.00 4.79
1288 1371 4.344237 GGGCAGGTGAATCCCTTG 57.656 61.111 0.00 0.00 37.08 3.61
1289 1372 1.384191 GGGCAGGTGAATCCCTTGT 59.616 57.895 0.00 0.00 37.08 3.16
1291 1374 1.026718 GGCAGGTGAATCCCTTGTCG 61.027 60.000 0.00 0.00 36.75 4.35
1292 1375 1.026718 GCAGGTGAATCCCTTGTCGG 61.027 60.000 0.00 0.00 36.75 4.79
1411 1494 2.082140 TCAGTGCCGGTATCAGGTAT 57.918 50.000 1.90 0.00 0.00 2.73
1413 1496 0.393077 AGTGCCGGTATCAGGTATGC 59.607 55.000 1.90 0.00 0.00 3.14
1414 1497 0.105964 GTGCCGGTATCAGGTATGCA 59.894 55.000 1.90 0.00 0.00 3.96
1424 1507 0.812811 CAGGTATGCACGCATCTGCT 60.813 55.000 7.99 0.00 38.07 4.24
1426 1509 0.028505 GGTATGCACGCATCTGCTTG 59.971 55.000 7.99 4.44 42.38 4.01
1427 1510 1.009078 GTATGCACGCATCTGCTTGA 58.991 50.000 7.99 0.00 42.11 3.02
1428 1511 1.004185 GTATGCACGCATCTGCTTGAG 60.004 52.381 7.99 0.00 42.11 3.02
1429 1512 0.392060 ATGCACGCATCTGCTTGAGA 60.392 50.000 12.29 0.00 42.11 3.27
1430 1513 0.603439 TGCACGCATCTGCTTGAGAA 60.603 50.000 12.29 0.00 42.11 2.87
1431 1514 0.518636 GCACGCATCTGCTTGAGAAA 59.481 50.000 12.29 0.00 42.11 2.52
1434 1517 1.802960 ACGCATCTGCTTGAGAAACTG 59.197 47.619 0.09 0.00 39.32 3.16
1437 1520 2.159544 GCATCTGCTTGAGAAACTGCTC 60.160 50.000 0.00 0.00 33.22 4.26
1438 1521 1.788258 TCTGCTTGAGAAACTGCTCG 58.212 50.000 0.00 0.00 37.73 5.03
1440 1523 1.458827 CTGCTTGAGAAACTGCTCGTC 59.541 52.381 0.00 0.00 37.73 4.20
1441 1524 1.069204 TGCTTGAGAAACTGCTCGTCT 59.931 47.619 0.00 0.00 37.73 4.18
1442 1525 2.139118 GCTTGAGAAACTGCTCGTCTT 58.861 47.619 0.00 0.00 37.73 3.01
1443 1526 2.545946 GCTTGAGAAACTGCTCGTCTTT 59.454 45.455 0.00 0.00 37.73 2.52
1444 1527 3.605692 GCTTGAGAAACTGCTCGTCTTTG 60.606 47.826 0.00 0.00 37.73 2.77
1445 1528 1.867233 TGAGAAACTGCTCGTCTTTGC 59.133 47.619 0.00 0.00 37.73 3.68
1446 1529 1.195674 GAGAAACTGCTCGTCTTTGCC 59.804 52.381 0.00 0.00 0.00 4.52
1449 1532 0.886490 AACTGCTCGTCTTTGCCTGG 60.886 55.000 0.00 0.00 0.00 4.45
1450 1533 2.669569 TGCTCGTCTTTGCCTGGC 60.670 61.111 12.87 12.87 0.00 4.85
1451 1534 2.669569 GCTCGTCTTTGCCTGGCA 60.670 61.111 19.30 19.30 36.47 4.92
1452 1535 2.042831 GCTCGTCTTTGCCTGGCAT 61.043 57.895 24.03 0.00 38.76 4.40
1455 1538 0.537143 TCGTCTTTGCCTGGCATTGT 60.537 50.000 24.03 0.00 38.76 2.71
1496 1579 3.807538 GCTGCTGCGTCCCATGTG 61.808 66.667 0.00 0.00 0.00 3.21
1497 1580 2.359107 CTGCTGCGTCCCATGTGT 60.359 61.111 0.00 0.00 0.00 3.72
1538 1623 1.207329 ACCACCTACATCTTCTTCGCC 59.793 52.381 0.00 0.00 0.00 5.54
1612 1697 0.108472 GGAGGAGCCAAATTTGCTGC 60.108 55.000 19.12 19.12 46.29 5.25
1620 1705 2.880268 GCCAAATTTGCTGCTTCCTTTT 59.120 40.909 12.92 0.00 0.00 2.27
1670 2115 5.815740 TGGTGTTAGTTTCAGACTTTCAGTC 59.184 40.000 0.00 0.00 45.38 3.51
1698 2143 0.322975 TGAGTGGCCAGAGAAGCTTC 59.677 55.000 19.11 19.11 0.00 3.86
1702 2147 1.279271 GTGGCCAGAGAAGCTTCCTTA 59.721 52.381 22.81 0.29 0.00 2.69
1747 2193 1.538629 TGCAGATGGGGTCCTCACA 60.539 57.895 0.00 0.00 0.00 3.58
1873 2319 6.207221 TCATGTACACATTCATGTTCAGCTTT 59.793 34.615 0.00 0.00 41.22 3.51
1969 2415 5.806366 TGATGCAGATGATTACTGTTGTG 57.194 39.130 0.00 0.00 37.64 3.33
1987 2433 0.831288 TGGGTTGGTCCAATTGCAGG 60.831 55.000 7.77 0.00 38.11 4.85
2155 2601 4.838152 TTCGGGCTGCTCATCGCC 62.838 66.667 0.00 0.00 45.55 5.54
2284 2730 7.102346 TCAAGACATTTTGTTGATGTTGGTTT 58.898 30.769 0.00 0.00 37.83 3.27
2313 2760 6.484288 TCTTTGAGGTGAATGTGGTATGAAT 58.516 36.000 0.00 0.00 0.00 2.57
2314 2761 6.947733 TCTTTGAGGTGAATGTGGTATGAATT 59.052 34.615 0.00 0.00 0.00 2.17
2317 2764 6.244654 TGAGGTGAATGTGGTATGAATTTGA 58.755 36.000 0.00 0.00 0.00 2.69
2319 2766 7.396907 TGAGGTGAATGTGGTATGAATTTGATT 59.603 33.333 0.00 0.00 0.00 2.57
2341 2788 6.844097 TTCAAAACACAAAGTACCCTTCTT 57.156 33.333 0.00 0.00 0.00 2.52
2408 2855 3.428045 GGAAAGCCTAATGACATGTGCAC 60.428 47.826 10.75 10.75 0.00 4.57
2495 2942 0.320683 GGCCATTGCTCCAACCAAAC 60.321 55.000 0.00 0.00 37.74 2.93
2504 2951 2.619646 GCTCCAACCAAACGTTTCCTTA 59.380 45.455 11.37 0.00 29.93 2.69
2544 2991 6.412362 TGCTTTGGCCTAAATTCTAAACAA 57.588 33.333 3.32 0.00 37.74 2.83
2634 3081 5.885230 TCTGAGATAAATGTGCAAACTGG 57.115 39.130 0.00 0.00 0.00 4.00
2659 3106 6.421202 GGCTCTCTGTATTTAATAGACGGTTG 59.579 42.308 0.00 0.00 0.00 3.77
2662 3109 7.324935 TCTCTGTATTTAATAGACGGTTGCAA 58.675 34.615 0.00 0.00 0.00 4.08
2667 3114 5.351233 TTTAATAGACGGTTGCAAGTGTG 57.649 39.130 0.00 0.00 0.00 3.82
2711 3163 1.137513 GGGACTTGTTGACGAGTTCG 58.862 55.000 5.54 0.00 40.54 3.95
2782 3234 1.760029 AGGTTTGCCAACGGAATGTTT 59.240 42.857 0.00 0.00 39.29 2.83
2807 3259 1.606668 TCGTGTTGTCATTTGGCCTTC 59.393 47.619 3.32 0.00 0.00 3.46
2809 3261 2.034558 CGTGTTGTCATTTGGCCTTCTT 59.965 45.455 3.32 0.00 0.00 2.52
2854 3306 2.047844 CGATCCTGGCGCTATGGG 60.048 66.667 7.64 0.00 0.00 4.00
2910 3365 7.012704 GGTTCTGCAGATGCTATGAGAATTTTA 59.987 37.037 19.04 0.00 42.66 1.52
2919 3374 7.643569 TGCTATGAGAATTTTATTGCCTCAA 57.356 32.000 0.00 0.00 37.41 3.02
2955 3410 5.401531 TCTTTGCTTCCTACGACTGTTAT 57.598 39.130 0.00 0.00 0.00 1.89
2958 3413 2.232696 TGCTTCCTACGACTGTTATGCA 59.767 45.455 0.00 0.00 0.00 3.96
3187 3642 6.152323 GGACAGTCATCAAGGTACTACTACAA 59.848 42.308 2.17 0.00 38.49 2.41
3343 3798 5.571784 CAACAATGATTGCTGTCCTGTAT 57.428 39.130 4.84 0.00 0.00 2.29
3373 3828 4.479993 AGCGTGGCATCCCAGCTC 62.480 66.667 0.00 0.00 43.18 4.09
3533 3989 9.515020 TTTCAATGTAATTTCTTGAACAGACAC 57.485 29.630 8.44 0.00 38.30 3.67
3642 4098 6.506661 AGCATCAGGTAGGATATGAGGAATA 58.493 40.000 0.00 0.00 0.00 1.75
3721 4177 6.098409 ACATTTCTCCACAGATACTCCGTAAT 59.902 38.462 0.00 0.00 0.00 1.89
3857 4313 0.782384 GTCCGTCAAAGTACGCACAG 59.218 55.000 0.00 0.00 41.51 3.66
3858 4314 0.669619 TCCGTCAAAGTACGCACAGA 59.330 50.000 0.00 0.00 41.51 3.41
3859 4315 1.271379 TCCGTCAAAGTACGCACAGAT 59.729 47.619 0.00 0.00 41.51 2.90
3860 4316 1.654105 CCGTCAAAGTACGCACAGATC 59.346 52.381 0.00 0.00 41.51 2.75
3861 4317 2.596452 CGTCAAAGTACGCACAGATCT 58.404 47.619 0.00 0.00 35.87 2.75
3939 4395 4.999311 TGTATCTGATATTGCAGTGCCATC 59.001 41.667 13.72 12.81 37.20 3.51
4049 4505 9.985318 GATGAGACAATCTTTGACATAGAAAAG 57.015 33.333 0.00 0.00 35.20 2.27
4446 4924 2.356135 CCCCGTGTGAGACTTAAATGG 58.644 52.381 0.00 0.00 0.00 3.16
4479 4957 0.323178 ATCTTTGCAGGGTGCTGGAG 60.323 55.000 0.00 0.00 45.31 3.86
4722 5200 0.260816 AGGAGTCACCGGCTATACCA 59.739 55.000 0.00 0.00 44.74 3.25
4800 5278 4.567971 TGTTTGTCATCATGCCATTTTCC 58.432 39.130 0.00 0.00 0.00 3.13
4814 5292 4.226761 CCATTTTCCAACGTTTAGCTGAC 58.773 43.478 0.00 0.00 0.00 3.51
4961 5439 1.003839 AAGCCGCGGTGAGATCAAA 60.004 52.632 28.70 0.00 0.00 2.69
5039 5517 1.221414 GCATCCGCAGTCCTTGTATC 58.779 55.000 0.00 0.00 38.36 2.24
5067 5545 4.554363 CCTACAGCCCTCGCGTCG 62.554 72.222 5.77 0.00 41.18 5.12
5192 5670 4.673534 CAATAATGCTGCATCGCTCATA 57.326 40.909 16.55 3.73 0.00 2.15
5193 5671 5.231265 CAATAATGCTGCATCGCTCATAT 57.769 39.130 16.55 6.04 0.00 1.78
5194 5672 6.354039 CAATAATGCTGCATCGCTCATATA 57.646 37.500 16.55 2.22 0.00 0.86
5195 5673 6.778108 CAATAATGCTGCATCGCTCATATAA 58.222 36.000 16.55 0.00 0.00 0.98
5196 5674 4.941325 AATGCTGCATCGCTCATATAAG 57.059 40.909 16.55 0.00 0.00 1.73
5197 5675 2.071540 TGCTGCATCGCTCATATAAGC 58.928 47.619 0.00 0.00 38.97 3.09
5198 5676 2.289257 TGCTGCATCGCTCATATAAGCT 60.289 45.455 0.00 0.00 40.23 3.74
5199 5677 3.056607 TGCTGCATCGCTCATATAAGCTA 60.057 43.478 0.00 0.00 40.23 3.32
5200 5678 4.118410 GCTGCATCGCTCATATAAGCTAT 58.882 43.478 0.00 0.00 40.23 2.97
5201 5679 4.025896 GCTGCATCGCTCATATAAGCTATG 60.026 45.833 7.81 7.81 44.21 2.23
5202 5680 4.436332 TGCATCGCTCATATAAGCTATGG 58.564 43.478 12.91 0.00 42.60 2.74
5532 6029 3.374220 TCATTTCTGCTTGCACCTTTG 57.626 42.857 0.00 0.00 0.00 2.77
5580 6077 7.065683 TGCATGTGTACTATTACCAGTTGAATG 59.934 37.037 0.00 0.00 0.00 2.67
5614 6111 4.219115 TGAGCCTATTCCCTTCTGAGTAG 58.781 47.826 0.00 0.00 0.00 2.57
5621 6118 2.325484 TCCCTTCTGAGTAGTGCACAA 58.675 47.619 21.04 1.13 0.00 3.33
5661 6159 1.881973 TGAACAATGACAGGCTCAAGC 59.118 47.619 0.00 0.00 41.14 4.01
5662 6160 2.157738 GAACAATGACAGGCTCAAGCT 58.842 47.619 1.46 0.00 41.70 3.74
5665 6163 3.754965 ACAATGACAGGCTCAAGCTTTA 58.245 40.909 0.00 0.00 41.70 1.85
5667 6165 4.022849 ACAATGACAGGCTCAAGCTTTAAC 60.023 41.667 0.00 0.00 41.70 2.01
5668 6166 3.207265 TGACAGGCTCAAGCTTTAACA 57.793 42.857 0.00 0.00 41.70 2.41
5670 6168 4.144297 TGACAGGCTCAAGCTTTAACAAT 58.856 39.130 0.00 0.00 41.70 2.71
5671 6169 5.312895 TGACAGGCTCAAGCTTTAACAATA 58.687 37.500 0.00 0.00 41.70 1.90
5672 6170 5.767665 TGACAGGCTCAAGCTTTAACAATAA 59.232 36.000 0.00 0.00 41.70 1.40
5746 6245 5.512788 GGATGAACATGTTACTTGAATTGCG 59.487 40.000 11.95 0.00 0.00 4.85
5749 6248 5.008118 TGAACATGTTACTTGAATTGCGACA 59.992 36.000 11.95 0.00 0.00 4.35
5757 6256 0.179227 TGAATTGCGACAACGATGCG 60.179 50.000 0.00 0.00 42.66 4.73
5769 6268 2.792374 CGATGCGGTCGGTGTATAC 58.208 57.895 3.62 0.00 46.47 1.47
5770 6269 0.662374 CGATGCGGTCGGTGTATACC 60.662 60.000 0.00 0.00 46.47 2.73
5781 6280 1.478137 GTGTATACCTGCTTCTCGCG 58.522 55.000 0.00 0.00 43.27 5.87
5785 6284 2.907897 ATACCTGCTTCTCGCGTGCC 62.908 60.000 5.77 0.00 43.27 5.01
5786 6285 4.749310 CCTGCTTCTCGCGTGCCT 62.749 66.667 5.77 0.00 43.27 4.75
5787 6286 2.740055 CTGCTTCTCGCGTGCCTT 60.740 61.111 5.77 0.00 43.27 4.35
5804 6303 1.815003 CCTTGAGTCCCATGCTTCAAC 59.185 52.381 0.00 0.00 0.00 3.18
5840 6339 6.100404 ACCAGCTTAATTCAGAATGCAAAA 57.900 33.333 0.00 0.00 34.76 2.44
5980 6492 3.426159 CGCATGCGGAAAACAAGATAAGT 60.426 43.478 31.99 0.00 35.56 2.24
6030 6542 2.171448 AGATTGCACAGGGAGATACCAC 59.829 50.000 0.00 0.00 41.20 4.16
6109 6621 2.848608 TGGTACAGGCACCAGAACT 58.151 52.632 0.00 0.00 43.76 3.01
6110 6622 0.396435 TGGTACAGGCACCAGAACTG 59.604 55.000 0.00 0.00 43.76 3.16
6111 6623 0.955919 GGTACAGGCACCAGAACTGC 60.956 60.000 0.00 0.00 38.55 4.40
6112 6624 0.250295 GTACAGGCACCAGAACTGCA 60.250 55.000 0.00 0.00 36.27 4.41
6113 6625 0.035317 TACAGGCACCAGAACTGCAG 59.965 55.000 13.48 13.48 36.27 4.41
6114 6626 1.970114 CAGGCACCAGAACTGCAGG 60.970 63.158 19.93 2.50 36.27 4.85
6115 6627 2.149383 AGGCACCAGAACTGCAGGA 61.149 57.895 19.93 0.00 36.27 3.86
6116 6628 1.968540 GGCACCAGAACTGCAGGAC 60.969 63.158 19.93 11.37 36.27 3.85
6117 6629 1.227943 GCACCAGAACTGCAGGACA 60.228 57.895 19.93 0.00 34.56 4.02
6118 6630 0.607489 GCACCAGAACTGCAGGACAT 60.607 55.000 19.93 0.44 34.56 3.06
6119 6631 1.162698 CACCAGAACTGCAGGACATG 58.837 55.000 19.93 10.75 0.00 3.21
6120 6632 0.037303 ACCAGAACTGCAGGACATGG 59.963 55.000 19.93 20.69 0.00 3.66
6121 6633 0.037303 CCAGAACTGCAGGACATGGT 59.963 55.000 19.93 0.00 0.00 3.55
6122 6634 1.278985 CCAGAACTGCAGGACATGGTA 59.721 52.381 19.93 0.00 0.00 3.25
6125 6637 1.555075 GAACTGCAGGACATGGTAGGA 59.445 52.381 19.93 0.00 0.00 2.94
6141 6653 4.901849 TGGTAGGAAGGAAGGTATGATCTG 59.098 45.833 0.00 0.00 0.00 2.90
6155 6667 2.325484 TGATCTGTGGTGTGGTAGTGT 58.675 47.619 0.00 0.00 0.00 3.55
6176 6688 1.602323 TTGCCAAGCCAACTACCGG 60.602 57.895 0.00 0.00 0.00 5.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.315642 CGGAGGGAGTATTTTTCTAGGTTTTC 59.684 42.308 0.00 0.00 0.00 2.29
3 4 4.781621 ACGGAGGGAGTATTTTTCTAGGTT 59.218 41.667 0.00 0.00 0.00 3.50
4 5 4.359996 ACGGAGGGAGTATTTTTCTAGGT 58.640 43.478 0.00 0.00 0.00 3.08
5 6 5.354842 AACGGAGGGAGTATTTTTCTAGG 57.645 43.478 0.00 0.00 0.00 3.02
6 7 5.358090 GGAACGGAGGGAGTATTTTTCTAG 58.642 45.833 0.00 0.00 0.00 2.43
7 8 5.349061 GGAACGGAGGGAGTATTTTTCTA 57.651 43.478 0.00 0.00 0.00 2.10
8 9 4.217836 GGAACGGAGGGAGTATTTTTCT 57.782 45.455 0.00 0.00 0.00 2.52
25 26 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
26 27 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
27 28 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
28 29 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
29 30 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
30 31 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
31 32 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
33 34 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
34 35 9.031537 TGTATCTAGACAAATCCAAGACAAGTA 57.968 33.333 0.00 0.00 0.00 2.24
35 36 7.907389 TGTATCTAGACAAATCCAAGACAAGT 58.093 34.615 0.00 0.00 0.00 3.16
36 37 8.253810 TCTGTATCTAGACAAATCCAAGACAAG 58.746 37.037 0.00 0.00 0.00 3.16
37 38 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
38 39 7.718334 TCTGTATCTAGACAAATCCAAGACA 57.282 36.000 0.00 0.00 0.00 3.41
39 40 8.200792 ACATCTGTATCTAGACAAATCCAAGAC 58.799 37.037 0.00 0.00 0.00 3.01
40 41 8.311395 ACATCTGTATCTAGACAAATCCAAGA 57.689 34.615 0.00 0.00 0.00 3.02
59 60 9.190858 GCACTAAAATGAGTCTAGATACATCTG 57.809 37.037 12.66 7.80 37.76 2.90
60 61 9.142014 AGCACTAAAATGAGTCTAGATACATCT 57.858 33.333 12.66 0.00 40.86 2.90
63 64 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
67 68 9.628500 TGTATCTAGCACTAAAATGAGTCTAGA 57.372 33.333 11.59 11.59 38.76 2.43
70 71 8.364142 GGATGTATCTAGCACTAAAATGAGTCT 58.636 37.037 0.00 0.00 0.00 3.24
71 72 8.144478 TGGATGTATCTAGCACTAAAATGAGTC 58.856 37.037 0.00 0.00 0.00 3.36
72 73 8.023021 TGGATGTATCTAGCACTAAAATGAGT 57.977 34.615 0.00 0.00 0.00 3.41
102 103 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
103 104 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
104 105 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
105 106 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
106 107 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
107 108 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
108 109 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
109 110 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
110 111 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
111 112 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
112 113 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
113 114 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
114 115 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
115 116 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
116 117 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
117 118 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
118 119 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
119 120 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
120 121 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
121 122 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
122 123 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
123 124 1.856629 TTACTCCCTCCGTTCCGAAT 58.143 50.000 0.00 0.00 0.00 3.34
124 125 1.856629 ATTACTCCCTCCGTTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
125 126 1.753073 GAATTACTCCCTCCGTTCCGA 59.247 52.381 0.00 0.00 0.00 4.55
126 127 1.755380 AGAATTACTCCCTCCGTTCCG 59.245 52.381 0.00 0.00 0.00 4.30
127 128 3.908643 AAGAATTACTCCCTCCGTTCC 57.091 47.619 0.00 0.00 0.00 3.62
128 129 7.046033 TCAATTAAGAATTACTCCCTCCGTTC 58.954 38.462 0.00 0.00 0.00 3.95
129 130 6.954232 TCAATTAAGAATTACTCCCTCCGTT 58.046 36.000 0.00 0.00 0.00 4.44
130 131 6.555463 TCAATTAAGAATTACTCCCTCCGT 57.445 37.500 0.00 0.00 0.00 4.69
131 132 9.209175 CTAATCAATTAAGAATTACTCCCTCCG 57.791 37.037 0.00 0.00 0.00 4.63
145 146 7.416022 CAAGCAGCTTCCTCTAATCAATTAAG 58.584 38.462 4.07 0.00 0.00 1.85
180 181 4.373116 GCTGTCCGTCTGGCCGAA 62.373 66.667 0.00 0.00 34.14 4.30
232 234 1.148157 CGTATTCACTGGCTCTGGCG 61.148 60.000 0.00 0.00 39.81 5.69
238 240 7.948357 TCATTTATACTACGTATTCACTGGCT 58.052 34.615 0.00 0.00 30.79 4.75
240 242 9.395707 GTCTCATTTATACTACGTATTCACTGG 57.604 37.037 0.00 0.00 30.79 4.00
241 243 9.395707 GGTCTCATTTATACTACGTATTCACTG 57.604 37.037 0.00 0.00 30.79 3.66
242 244 8.574737 GGGTCTCATTTATACTACGTATTCACT 58.425 37.037 0.00 0.00 30.79 3.41
243 245 8.355169 TGGGTCTCATTTATACTACGTATTCAC 58.645 37.037 0.00 0.00 30.79 3.18
244 246 8.355169 GTGGGTCTCATTTATACTACGTATTCA 58.645 37.037 0.00 0.00 30.79 2.57
245 247 7.811713 GGTGGGTCTCATTTATACTACGTATTC 59.188 40.741 0.00 0.00 30.79 1.75
246 248 7.256083 GGGTGGGTCTCATTTATACTACGTATT 60.256 40.741 0.00 0.00 30.79 1.89
247 249 6.210185 GGGTGGGTCTCATTTATACTACGTAT 59.790 42.308 0.00 0.00 33.05 3.06
248 250 5.536161 GGGTGGGTCTCATTTATACTACGTA 59.464 44.000 0.00 0.00 0.00 3.57
249 251 4.343239 GGGTGGGTCTCATTTATACTACGT 59.657 45.833 0.00 0.00 0.00 3.57
250 252 4.342951 TGGGTGGGTCTCATTTATACTACG 59.657 45.833 0.00 0.00 0.00 3.51
251 253 5.601313 TCTGGGTGGGTCTCATTTATACTAC 59.399 44.000 0.00 0.00 0.00 2.73
252 254 5.784023 TCTGGGTGGGTCTCATTTATACTA 58.216 41.667 0.00 0.00 0.00 1.82
253 255 4.631234 TCTGGGTGGGTCTCATTTATACT 58.369 43.478 0.00 0.00 0.00 2.12
254 256 4.743955 GCTCTGGGTGGGTCTCATTTATAC 60.744 50.000 0.00 0.00 0.00 1.47
263 265 1.539869 ATGTGCTCTGGGTGGGTCT 60.540 57.895 0.00 0.00 0.00 3.85
286 288 6.980397 GGAATTGATTTTGCCTGAACGATTAT 59.020 34.615 0.00 0.00 0.00 1.28
287 289 6.071672 TGGAATTGATTTTGCCTGAACGATTA 60.072 34.615 0.00 0.00 0.00 1.75
291 293 3.911868 TGGAATTGATTTTGCCTGAACG 58.088 40.909 0.00 0.00 0.00 3.95
296 355 5.409214 CGAAAACATGGAATTGATTTTGCCT 59.591 36.000 0.00 0.00 0.00 4.75
302 361 6.158598 CCAAGACGAAAACATGGAATTGATT 58.841 36.000 0.00 0.00 32.82 2.57
310 369 5.212194 CAAGTTACCAAGACGAAAACATGG 58.788 41.667 0.00 0.00 37.19 3.66
317 376 4.336153 GGGAAAACAAGTTACCAAGACGAA 59.664 41.667 0.00 0.00 0.00 3.85
331 390 1.212441 ACTACCACCACGGGAAAACAA 59.788 47.619 0.00 0.00 40.22 2.83
333 392 1.202675 TGACTACCACCACGGGAAAAC 60.203 52.381 0.00 0.00 40.22 2.43
341 400 4.067972 TCTTGAGTTTGACTACCACCAC 57.932 45.455 0.00 0.00 0.00 4.16
364 423 5.530915 TCTTAGGACTTGTGTTGGTCAAATG 59.469 40.000 0.00 0.00 34.49 2.32
385 444 2.987413 TGCAAATGCGATTCGTTCTT 57.013 40.000 8.03 0.00 45.83 2.52
387 446 3.429085 AGATTGCAAATGCGATTCGTTC 58.571 40.909 1.71 0.00 44.75 3.95
396 455 6.639632 TCCCTCTAATTAGATTGCAAATGC 57.360 37.500 15.47 0.00 42.50 3.56
455 514 4.567987 AAATCCTATCCTGTCCTCTCCT 57.432 45.455 0.00 0.00 0.00 3.69
456 515 4.775253 CCTAAATCCTATCCTGTCCTCTCC 59.225 50.000 0.00 0.00 0.00 3.71
457 516 5.479027 GTCCTAAATCCTATCCTGTCCTCTC 59.521 48.000 0.00 0.00 0.00 3.20
458 517 5.137082 AGTCCTAAATCCTATCCTGTCCTCT 59.863 44.000 0.00 0.00 0.00 3.69
459 518 5.399113 AGTCCTAAATCCTATCCTGTCCTC 58.601 45.833 0.00 0.00 0.00 3.71
484 543 5.005682 GTCAAATTTGCCGGAAAAGATATGC 59.994 40.000 14.33 0.00 0.00 3.14
488 547 4.599047 TGTCAAATTTGCCGGAAAAGAT 57.401 36.364 14.33 1.70 0.00 2.40
489 548 4.392921 TTGTCAAATTTGCCGGAAAAGA 57.607 36.364 14.33 2.28 0.00 2.52
490 549 4.570369 AGTTTGTCAAATTTGCCGGAAAAG 59.430 37.500 14.33 0.00 0.00 2.27
491 550 4.508662 AGTTTGTCAAATTTGCCGGAAAA 58.491 34.783 10.85 10.85 0.00 2.29
492 551 4.130286 AGTTTGTCAAATTTGCCGGAAA 57.870 36.364 13.54 0.00 0.00 3.13
493 552 3.810310 AGTTTGTCAAATTTGCCGGAA 57.190 38.095 13.54 0.00 0.00 4.30
494 553 3.131223 TCAAGTTTGTCAAATTTGCCGGA 59.869 39.130 22.24 8.11 37.82 5.14
495 554 3.245048 GTCAAGTTTGTCAAATTTGCCGG 59.755 43.478 22.24 0.00 37.82 6.13
497 556 4.441792 AGGTCAAGTTTGTCAAATTTGCC 58.558 39.130 22.24 23.14 37.82 4.52
498 557 8.296713 TCTATAGGTCAAGTTTGTCAAATTTGC 58.703 33.333 22.24 17.78 37.82 3.68
499 558 9.612620 GTCTATAGGTCAAGTTTGTCAAATTTG 57.387 33.333 21.44 21.44 38.85 2.32
500 559 8.504005 CGTCTATAGGTCAAGTTTGTCAAATTT 58.496 33.333 0.40 0.45 0.00 1.82
501 560 7.119262 CCGTCTATAGGTCAAGTTTGTCAAATT 59.881 37.037 0.40 0.00 0.00 1.82
502 561 6.594159 CCGTCTATAGGTCAAGTTTGTCAAAT 59.406 38.462 0.40 0.00 0.00 2.32
503 562 5.929992 CCGTCTATAGGTCAAGTTTGTCAAA 59.070 40.000 0.00 0.00 0.00 2.69
504 563 5.244402 TCCGTCTATAGGTCAAGTTTGTCAA 59.756 40.000 0.00 0.00 0.00 3.18
505 564 4.768448 TCCGTCTATAGGTCAAGTTTGTCA 59.232 41.667 0.00 0.00 0.00 3.58
506 565 5.320549 TCCGTCTATAGGTCAAGTTTGTC 57.679 43.478 0.00 0.00 0.00 3.18
507 566 5.733620 TTCCGTCTATAGGTCAAGTTTGT 57.266 39.130 0.00 0.00 0.00 2.83
508 567 6.338146 TGATTCCGTCTATAGGTCAAGTTTG 58.662 40.000 0.00 0.00 0.00 2.93
510 569 6.540438 TTGATTCCGTCTATAGGTCAAGTT 57.460 37.500 0.00 0.00 0.00 2.66
511 570 6.540438 TTTGATTCCGTCTATAGGTCAAGT 57.460 37.500 0.00 0.00 29.39 3.16
512 571 7.169982 GTGATTTGATTCCGTCTATAGGTCAAG 59.830 40.741 0.00 0.00 29.39 3.02
513 572 6.984474 GTGATTTGATTCCGTCTATAGGTCAA 59.016 38.462 0.00 0.00 0.00 3.18
514 573 6.097696 TGTGATTTGATTCCGTCTATAGGTCA 59.902 38.462 0.00 0.00 0.00 4.02
515 574 6.513180 TGTGATTTGATTCCGTCTATAGGTC 58.487 40.000 0.00 0.00 0.00 3.85
516 575 6.323996 TCTGTGATTTGATTCCGTCTATAGGT 59.676 38.462 0.00 0.00 0.00 3.08
517 576 6.749139 TCTGTGATTTGATTCCGTCTATAGG 58.251 40.000 0.00 0.00 0.00 2.57
518 577 8.824159 ATTCTGTGATTTGATTCCGTCTATAG 57.176 34.615 0.00 0.00 0.00 1.31
520 579 9.046296 GTTATTCTGTGATTTGATTCCGTCTAT 57.954 33.333 0.00 0.00 0.00 1.98
521 580 7.494625 GGTTATTCTGTGATTTGATTCCGTCTA 59.505 37.037 0.00 0.00 0.00 2.59
522 581 6.316390 GGTTATTCTGTGATTTGATTCCGTCT 59.684 38.462 0.00 0.00 0.00 4.18
523 582 6.316390 AGGTTATTCTGTGATTTGATTCCGTC 59.684 38.462 0.00 0.00 0.00 4.79
524 583 6.180472 AGGTTATTCTGTGATTTGATTCCGT 58.820 36.000 0.00 0.00 0.00 4.69
525 584 6.683974 AGGTTATTCTGTGATTTGATTCCG 57.316 37.500 0.00 0.00 0.00 4.30
526 585 8.787852 GGATAGGTTATTCTGTGATTTGATTCC 58.212 37.037 0.00 0.00 0.00 3.01
527 586 8.499162 CGGATAGGTTATTCTGTGATTTGATTC 58.501 37.037 0.00 0.00 0.00 2.52
528 587 7.993183 ACGGATAGGTTATTCTGTGATTTGATT 59.007 33.333 0.00 0.00 0.00 2.57
529 588 7.442364 CACGGATAGGTTATTCTGTGATTTGAT 59.558 37.037 6.09 0.00 0.00 2.57
530 589 6.761242 CACGGATAGGTTATTCTGTGATTTGA 59.239 38.462 6.09 0.00 0.00 2.69
531 590 6.761242 TCACGGATAGGTTATTCTGTGATTTG 59.239 38.462 9.82 0.00 29.01 2.32
532 591 6.884832 TCACGGATAGGTTATTCTGTGATTT 58.115 36.000 9.82 0.00 29.01 2.17
533 592 6.479972 TCACGGATAGGTTATTCTGTGATT 57.520 37.500 9.82 0.00 29.01 2.57
534 593 6.479972 TTCACGGATAGGTTATTCTGTGAT 57.520 37.500 13.59 0.00 31.90 3.06
535 594 5.925506 TTCACGGATAGGTTATTCTGTGA 57.074 39.130 9.82 9.82 30.74 3.58
536 595 6.106673 AGTTTCACGGATAGGTTATTCTGTG 58.893 40.000 5.70 5.70 0.00 3.66
537 596 6.295719 AGTTTCACGGATAGGTTATTCTGT 57.704 37.500 0.00 0.00 0.00 3.41
538 597 8.888579 AATAGTTTCACGGATAGGTTATTCTG 57.111 34.615 0.00 0.00 0.00 3.02
539 598 9.543783 GAAATAGTTTCACGGATAGGTTATTCT 57.456 33.333 0.00 0.00 39.45 2.40
540 599 9.321562 TGAAATAGTTTCACGGATAGGTTATTC 57.678 33.333 1.24 0.00 44.21 1.75
554 613 1.463056 CAGCCGCGTGAAATAGTTTCA 59.537 47.619 4.92 1.24 46.68 2.69
555 614 1.730064 TCAGCCGCGTGAAATAGTTTC 59.270 47.619 4.92 0.00 40.08 2.78
556 615 1.463444 GTCAGCCGCGTGAAATAGTTT 59.537 47.619 4.92 0.00 0.00 2.66
557 616 1.076332 GTCAGCCGCGTGAAATAGTT 58.924 50.000 4.92 0.00 0.00 2.24
558 617 0.739813 GGTCAGCCGCGTGAAATAGT 60.740 55.000 4.92 0.00 0.00 2.12
559 618 0.460284 AGGTCAGCCGCGTGAAATAG 60.460 55.000 4.92 0.00 40.50 1.73
560 619 0.036765 AAGGTCAGCCGCGTGAAATA 60.037 50.000 4.92 0.00 40.50 1.40
561 620 0.889186 AAAGGTCAGCCGCGTGAAAT 60.889 50.000 4.92 0.00 40.50 2.17
562 621 1.098712 AAAAGGTCAGCCGCGTGAAA 61.099 50.000 4.92 0.00 40.50 2.69
563 622 1.098712 AAAAAGGTCAGCCGCGTGAA 61.099 50.000 4.92 0.00 40.50 3.18
564 623 1.525077 AAAAAGGTCAGCCGCGTGA 60.525 52.632 4.92 0.00 40.50 4.35
565 624 1.370414 CAAAAAGGTCAGCCGCGTG 60.370 57.895 4.92 0.00 40.50 5.34
566 625 1.822186 ACAAAAAGGTCAGCCGCGT 60.822 52.632 4.92 0.00 40.50 6.01
567 626 1.370414 CACAAAAAGGTCAGCCGCG 60.370 57.895 0.00 0.00 40.50 6.46
568 627 0.594796 CACACAAAAAGGTCAGCCGC 60.595 55.000 0.00 0.00 40.50 6.53
569 628 1.021202 TCACACAAAAAGGTCAGCCG 58.979 50.000 0.00 0.00 40.50 5.52
570 629 1.268539 CGTCACACAAAAAGGTCAGCC 60.269 52.381 0.00 0.00 0.00 4.85
571 630 1.859998 GCGTCACACAAAAAGGTCAGC 60.860 52.381 0.00 0.00 0.00 4.26
572 631 1.268539 GGCGTCACACAAAAAGGTCAG 60.269 52.381 0.00 0.00 0.00 3.51
573 632 0.736053 GGCGTCACACAAAAAGGTCA 59.264 50.000 0.00 0.00 0.00 4.02
574 633 0.030235 GGGCGTCACACAAAAAGGTC 59.970 55.000 0.00 0.00 0.00 3.85
575 634 1.720694 CGGGCGTCACACAAAAAGGT 61.721 55.000 0.00 0.00 0.00 3.50
576 635 1.008995 CGGGCGTCACACAAAAAGG 60.009 57.895 0.00 0.00 0.00 3.11
577 636 0.316689 GTCGGGCGTCACACAAAAAG 60.317 55.000 0.00 0.00 0.00 2.27
578 637 1.025113 TGTCGGGCGTCACACAAAAA 61.025 50.000 0.00 0.00 0.00 1.94
579 638 1.449778 TGTCGGGCGTCACACAAAA 60.450 52.632 0.00 0.00 0.00 2.44
580 639 2.174969 GTGTCGGGCGTCACACAAA 61.175 57.895 5.81 0.00 42.20 2.83
581 640 2.586635 GTGTCGGGCGTCACACAA 60.587 61.111 5.81 0.00 42.20 3.33
582 641 4.934942 CGTGTCGGGCGTCACACA 62.935 66.667 10.72 0.00 42.67 3.72
583 642 4.634133 TCGTGTCGGGCGTCACAC 62.634 66.667 0.75 0.75 39.70 3.82
584 643 3.834447 CTTCGTGTCGGGCGTCACA 62.834 63.158 0.00 0.00 34.69 3.58
585 644 3.103911 CTTCGTGTCGGGCGTCAC 61.104 66.667 0.00 0.00 0.00 3.67
586 645 4.351938 CCTTCGTGTCGGGCGTCA 62.352 66.667 0.00 0.00 0.00 4.35
594 653 2.758770 TAGTGTGGCGCCTTCGTGTC 62.759 60.000 29.70 10.72 38.14 3.67
595 654 2.863346 TAGTGTGGCGCCTTCGTGT 61.863 57.895 29.70 9.85 38.14 4.49
596 655 2.048597 TAGTGTGGCGCCTTCGTG 60.049 61.111 29.70 0.00 38.14 4.35
597 656 2.048503 GTAGTGTGGCGCCTTCGT 60.049 61.111 29.70 12.53 38.14 3.85
598 657 2.048597 TGTAGTGTGGCGCCTTCG 60.049 61.111 29.70 0.00 39.07 3.79
599 658 1.004918 AGTGTAGTGTGGCGCCTTC 60.005 57.895 29.70 20.58 0.00 3.46
600 659 1.301716 CAGTGTAGTGTGGCGCCTT 60.302 57.895 29.70 13.03 0.00 4.35
601 660 2.343758 CAGTGTAGTGTGGCGCCT 59.656 61.111 29.70 9.99 0.00 5.52
602 661 2.030562 ACAGTGTAGTGTGGCGCC 59.969 61.111 22.73 22.73 0.00 6.53
603 662 2.954753 GCACAGTGTAGTGTGGCGC 61.955 63.158 18.52 0.00 46.73 6.53
604 663 1.157257 TTGCACAGTGTAGTGTGGCG 61.157 55.000 18.52 0.00 46.73 5.69
605 664 0.307760 GTTGCACAGTGTAGTGTGGC 59.692 55.000 18.52 12.34 46.73 5.01
606 665 0.581529 CGTTGCACAGTGTAGTGTGG 59.418 55.000 18.52 1.81 46.73 4.17
608 667 1.157870 GGCGTTGCACAGTGTAGTGT 61.158 55.000 1.61 0.00 41.52 3.55
609 668 0.880278 AGGCGTTGCACAGTGTAGTG 60.880 55.000 1.61 0.00 42.37 2.74
610 669 0.600255 GAGGCGTTGCACAGTGTAGT 60.600 55.000 1.61 0.00 0.00 2.73
611 670 1.617755 CGAGGCGTTGCACAGTGTAG 61.618 60.000 1.61 0.00 0.00 2.74
612 671 1.663388 CGAGGCGTTGCACAGTGTA 60.663 57.895 1.61 0.00 0.00 2.90
613 672 2.967076 CGAGGCGTTGCACAGTGT 60.967 61.111 1.61 0.00 0.00 3.55
614 673 4.374702 GCGAGGCGTTGCACAGTG 62.375 66.667 13.75 0.00 32.59 3.66
615 674 4.908687 TGCGAGGCGTTGCACAGT 62.909 61.111 17.22 0.00 38.24 3.55
616 675 4.081030 CTGCGAGGCGTTGCACAG 62.081 66.667 17.22 5.41 38.24 3.66
617 676 2.499756 TATCTGCGAGGCGTTGCACA 62.500 55.000 17.22 8.16 38.24 4.57
618 677 1.756375 CTATCTGCGAGGCGTTGCAC 61.756 60.000 17.22 0.00 38.24 4.57
619 678 1.519234 CTATCTGCGAGGCGTTGCA 60.519 57.895 19.70 19.70 41.13 4.08
620 679 2.240500 CCTATCTGCGAGGCGTTGC 61.241 63.158 11.80 11.80 0.00 4.17
621 680 4.018609 CCTATCTGCGAGGCGTTG 57.981 61.111 0.00 0.00 0.00 4.10
630 689 1.661821 CGGTGTAGCGCCTATCTGC 60.662 63.158 2.29 0.00 0.00 4.26
631 690 1.661821 GCGGTGTAGCGCCTATCTG 60.662 63.158 16.69 0.00 0.00 2.90
632 691 2.728817 GCGGTGTAGCGCCTATCT 59.271 61.111 16.69 0.00 0.00 1.98
633 692 2.355956 GGCGGTGTAGCGCCTATC 60.356 66.667 32.72 12.40 46.71 2.08
648 707 4.000557 CACGTGTGCGACACTGGC 62.001 66.667 7.58 4.24 46.46 4.85
649 708 2.584970 ACACGTGTGCGACACTGG 60.585 61.111 22.71 10.03 46.46 4.00
650 709 1.215014 ATCACACGTGTGCGACACTG 61.215 55.000 37.70 16.83 46.46 3.66
651 710 0.939577 GATCACACGTGTGCGACACT 60.940 55.000 37.70 19.82 46.46 3.55
652 711 1.212455 TGATCACACGTGTGCGACAC 61.212 55.000 37.70 25.53 45.26 3.67
653 712 0.939106 CTGATCACACGTGTGCGACA 60.939 55.000 37.70 31.20 45.25 4.35
654 713 0.663269 TCTGATCACACGTGTGCGAC 60.663 55.000 37.70 29.00 45.25 5.19
655 714 0.031449 TTCTGATCACACGTGTGCGA 59.969 50.000 37.70 27.03 45.25 5.10
656 715 0.858583 TTTCTGATCACACGTGTGCG 59.141 50.000 37.70 25.53 45.25 5.34
657 716 3.542712 ATTTTCTGATCACACGTGTGC 57.457 42.857 37.70 26.75 45.25 4.57
658 717 6.228273 AGTAATTTTCTGATCACACGTGTG 57.772 37.500 37.04 37.04 46.91 3.82
659 718 7.656137 ACTTAGTAATTTTCTGATCACACGTGT 59.344 33.333 17.22 17.22 0.00 4.49
660 719 8.018677 ACTTAGTAATTTTCTGATCACACGTG 57.981 34.615 15.48 15.48 0.00 4.49
661 720 7.061905 CGACTTAGTAATTTTCTGATCACACGT 59.938 37.037 0.00 0.00 0.00 4.49
662 721 7.061905 ACGACTTAGTAATTTTCTGATCACACG 59.938 37.037 0.00 0.00 0.00 4.49
663 722 8.162880 CACGACTTAGTAATTTTCTGATCACAC 58.837 37.037 0.00 0.00 0.00 3.82
664 723 7.870954 ACACGACTTAGTAATTTTCTGATCACA 59.129 33.333 0.00 0.00 0.00 3.58
665 724 8.162880 CACACGACTTAGTAATTTTCTGATCAC 58.837 37.037 0.00 0.00 0.00 3.06
666 725 7.148639 GCACACGACTTAGTAATTTTCTGATCA 60.149 37.037 0.00 0.00 0.00 2.92
667 726 7.148639 TGCACACGACTTAGTAATTTTCTGATC 60.149 37.037 0.00 0.00 0.00 2.92
668 727 6.649141 TGCACACGACTTAGTAATTTTCTGAT 59.351 34.615 0.00 0.00 0.00 2.90
669 728 5.986741 TGCACACGACTTAGTAATTTTCTGA 59.013 36.000 0.00 0.00 0.00 3.27
670 729 6.223138 TGCACACGACTTAGTAATTTTCTG 57.777 37.500 0.00 0.00 0.00 3.02
671 730 5.107065 GCTGCACACGACTTAGTAATTTTCT 60.107 40.000 0.00 0.00 0.00 2.52
672 731 5.080068 GCTGCACACGACTTAGTAATTTTC 58.920 41.667 0.00 0.00 0.00 2.29
673 732 4.377022 CGCTGCACACGACTTAGTAATTTT 60.377 41.667 0.00 0.00 0.00 1.82
674 733 3.122948 CGCTGCACACGACTTAGTAATTT 59.877 43.478 0.00 0.00 0.00 1.82
675 734 2.666508 CGCTGCACACGACTTAGTAATT 59.333 45.455 0.00 0.00 0.00 1.40
676 735 2.259618 CGCTGCACACGACTTAGTAAT 58.740 47.619 0.00 0.00 0.00 1.89
677 736 1.693467 CGCTGCACACGACTTAGTAA 58.307 50.000 0.00 0.00 0.00 2.24
678 737 0.731514 GCGCTGCACACGACTTAGTA 60.732 55.000 0.00 0.00 0.00 1.82
679 738 2.022129 GCGCTGCACACGACTTAGT 61.022 57.895 0.00 0.00 0.00 2.24
680 739 2.730672 GGCGCTGCACACGACTTAG 61.731 63.158 7.64 0.00 35.06 2.18
681 740 2.736995 GGCGCTGCACACGACTTA 60.737 61.111 7.64 0.00 35.06 2.24
687 746 3.117171 CTCTCAGGCGCTGCACAC 61.117 66.667 7.64 0.00 0.00 3.82
689 748 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
690 749 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
691 750 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
692 751 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
704 763 4.165507 ACTGTATAGTGTGGCGCCTAGC 62.166 54.545 29.70 17.93 39.66 3.42
705 764 1.681793 ACTGTATAGTGTGGCGCCTAG 59.318 52.381 29.70 13.13 35.34 3.02
706 765 1.771565 ACTGTATAGTGTGGCGCCTA 58.228 50.000 29.70 14.39 35.34 3.93
707 766 2.591915 ACTGTATAGTGTGGCGCCT 58.408 52.632 29.70 9.99 35.34 5.52
715 774 3.609644 GCTAGGCGCTACACTGTATAGTG 60.610 52.174 17.20 17.20 46.55 2.74
716 775 2.553172 GCTAGGCGCTACACTGTATAGT 59.447 50.000 7.64 0.00 34.63 2.12
717 776 3.204597 GCTAGGCGCTACACTGTATAG 57.795 52.381 7.64 0.00 35.14 1.31
733 792 0.528684 GTGCAACGCCTAGGAGCTAG 60.529 60.000 14.75 3.92 34.16 3.42
734 793 0.970937 AGTGCAACGCCTAGGAGCTA 60.971 55.000 14.75 0.00 45.86 3.32
735 794 0.970937 TAGTGCAACGCCTAGGAGCT 60.971 55.000 14.75 3.79 45.86 4.09
736 795 0.528684 CTAGTGCAACGCCTAGGAGC 60.529 60.000 14.75 10.85 45.86 4.70
737 796 0.818296 ACTAGTGCAACGCCTAGGAG 59.182 55.000 14.75 12.99 45.86 3.69
738 797 0.530744 CACTAGTGCAACGCCTAGGA 59.469 55.000 14.75 0.00 45.86 2.94
739 798 3.050703 CACTAGTGCAACGCCTAGG 57.949 57.895 10.54 3.67 45.86 3.02
750 809 1.808799 CTCAGGCGCTGCACTAGTG 60.809 63.158 18.93 18.93 39.95 2.74
751 810 1.943116 CTCTCAGGCGCTGCACTAGT 61.943 60.000 7.64 0.00 0.00 2.57
752 811 1.226916 CTCTCAGGCGCTGCACTAG 60.227 63.158 7.64 0.00 0.00 2.57
753 812 2.888111 CTCTCAGGCGCTGCACTA 59.112 61.111 7.64 0.00 0.00 2.74
754 813 4.756458 GCTCTCAGGCGCTGCACT 62.756 66.667 7.64 0.00 0.00 4.40
755 814 3.362399 TAGCTCTCAGGCGCTGCAC 62.362 63.158 7.64 0.00 37.05 4.57
756 815 3.070576 TAGCTCTCAGGCGCTGCA 61.071 61.111 7.64 0.00 37.05 4.41
757 816 2.279385 CTAGCTCTCAGGCGCTGC 60.279 66.667 7.64 2.66 37.05 5.25
758 817 2.416678 CCTAGCTCTCAGGCGCTG 59.583 66.667 7.64 3.67 37.05 5.18
771 830 4.514577 CTGACCCGTGGCGCCTAG 62.515 72.222 29.70 20.71 0.00 3.02
782 841 1.429148 CTATTTCACGCGGCTGACCC 61.429 60.000 12.47 0.00 0.00 4.46
783 842 0.739813 ACTATTTCACGCGGCTGACC 60.740 55.000 12.47 0.00 0.00 4.02
784 843 1.076332 AACTATTTCACGCGGCTGAC 58.924 50.000 12.47 0.00 0.00 3.51
785 844 1.730064 GAAACTATTTCACGCGGCTGA 59.270 47.619 12.47 2.44 39.45 4.26
786 845 1.463056 TGAAACTATTTCACGCGGCTG 59.537 47.619 12.47 0.00 44.21 4.85
787 846 1.732259 CTGAAACTATTTCACGCGGCT 59.268 47.619 12.47 0.00 44.21 5.52
788 847 1.202031 CCTGAAACTATTTCACGCGGC 60.202 52.381 12.47 0.00 44.21 6.53
789 848 1.396996 CCCTGAAACTATTTCACGCGG 59.603 52.381 12.47 0.00 44.21 6.46
790 849 2.343101 TCCCTGAAACTATTTCACGCG 58.657 47.619 3.53 3.53 44.21 6.01
791 850 5.116882 ACTATCCCTGAAACTATTTCACGC 58.883 41.667 0.00 0.00 44.21 5.34
792 851 6.816640 TGAACTATCCCTGAAACTATTTCACG 59.183 38.462 0.00 0.00 44.21 4.35
793 852 8.738645 ATGAACTATCCCTGAAACTATTTCAC 57.261 34.615 0.00 0.00 44.21 3.18
798 857 9.784531 CACATAATGAACTATCCCTGAAACTAT 57.215 33.333 0.00 0.00 0.00 2.12
799 858 8.988060 TCACATAATGAACTATCCCTGAAACTA 58.012 33.333 0.00 0.00 33.02 2.24
800 859 7.861629 TCACATAATGAACTATCCCTGAAACT 58.138 34.615 0.00 0.00 33.02 2.66
801 860 8.682936 ATCACATAATGAACTATCCCTGAAAC 57.317 34.615 0.00 0.00 41.93 2.78
802 861 9.699410 AAATCACATAATGAACTATCCCTGAAA 57.301 29.630 0.00 0.00 41.93 2.69
852 911 4.397420 AGGGGAAAAATGGCAAATTTGAC 58.603 39.130 22.31 19.99 36.50 3.18
853 912 4.720775 AGGGGAAAAATGGCAAATTTGA 57.279 36.364 22.31 1.94 0.00 2.69
854 913 4.826183 TCAAGGGGAAAAATGGCAAATTTG 59.174 37.500 14.03 14.03 0.00 2.32
855 914 5.059134 TCAAGGGGAAAAATGGCAAATTT 57.941 34.783 0.00 0.00 0.00 1.82
856 915 4.720775 TCAAGGGGAAAAATGGCAAATT 57.279 36.364 0.00 0.00 0.00 1.82
857 916 4.324486 GGATCAAGGGGAAAAATGGCAAAT 60.324 41.667 0.00 0.00 0.00 2.32
858 917 3.008923 GGATCAAGGGGAAAAATGGCAAA 59.991 43.478 0.00 0.00 0.00 3.68
859 918 2.571202 GGATCAAGGGGAAAAATGGCAA 59.429 45.455 0.00 0.00 0.00 4.52
860 919 2.187100 GGATCAAGGGGAAAAATGGCA 58.813 47.619 0.00 0.00 0.00 4.92
861 920 1.486310 GGGATCAAGGGGAAAAATGGC 59.514 52.381 0.00 0.00 0.00 4.40
862 921 1.756538 CGGGATCAAGGGGAAAAATGG 59.243 52.381 0.00 0.00 0.00 3.16
863 922 2.427095 GACGGGATCAAGGGGAAAAATG 59.573 50.000 0.00 0.00 0.00 2.32
864 923 2.735151 GACGGGATCAAGGGGAAAAAT 58.265 47.619 0.00 0.00 0.00 1.82
865 924 1.612199 CGACGGGATCAAGGGGAAAAA 60.612 52.381 0.00 0.00 0.00 1.94
873 932 4.238514 GGAAGATTATCGACGGGATCAAG 58.761 47.826 0.00 0.00 36.55 3.02
893 966 1.901159 CCAATTTCCTGCCACAATGGA 59.099 47.619 0.00 0.00 40.96 3.41
896 969 4.592778 ACTAAACCAATTTCCTGCCACAAT 59.407 37.500 0.00 0.00 0.00 2.71
902 975 5.941647 TGGTACTACTAAACCAATTTCCTGC 59.058 40.000 0.00 0.00 42.74 4.85
933 1006 0.035630 GTGGAGAGTCAGCAGGCATT 60.036 55.000 0.00 0.00 0.00 3.56
934 1007 0.908656 AGTGGAGAGTCAGCAGGCAT 60.909 55.000 0.00 0.00 0.00 4.40
987 1065 1.153549 CGGAAGGTACTGGAGCTGC 60.154 63.158 0.00 0.00 40.86 5.25
1055 1133 2.331132 GCAGCACTGGTGAGGAAGC 61.331 63.158 12.50 0.00 32.22 3.86
1056 1134 0.673022 GAGCAGCACTGGTGAGGAAG 60.673 60.000 12.50 0.00 41.93 3.46
1057 1135 1.372683 GAGCAGCACTGGTGAGGAA 59.627 57.895 12.50 0.00 41.93 3.36
1058 1136 2.587247 GGAGCAGCACTGGTGAGGA 61.587 63.158 12.50 0.00 41.93 3.71
1059 1137 2.046507 GGAGCAGCACTGGTGAGG 60.047 66.667 12.50 0.00 41.93 3.86
1060 1138 2.046507 GGGAGCAGCACTGGTGAG 60.047 66.667 12.50 0.00 41.93 3.51
1061 1139 2.527624 AGGGAGCAGCACTGGTGA 60.528 61.111 12.50 0.00 41.93 4.02
1062 1140 2.046507 GAGGGAGCAGCACTGGTG 60.047 66.667 7.15 3.73 41.93 4.17
1291 1374 0.107165 CCTCCATTTCCTCGGAACCC 60.107 60.000 0.00 0.00 33.41 4.11
1292 1375 0.909623 TCCTCCATTTCCTCGGAACC 59.090 55.000 0.00 0.00 33.41 3.62
1293 1376 1.831736 TCTCCTCCATTTCCTCGGAAC 59.168 52.381 0.00 0.00 33.41 3.62
1424 1507 2.287915 GCAAAGACGAGCAGTTTCTCAA 59.712 45.455 0.00 0.00 33.41 3.02
1426 1509 1.195674 GGCAAAGACGAGCAGTTTCTC 59.804 52.381 0.00 0.00 0.00 2.87
1427 1510 1.202698 AGGCAAAGACGAGCAGTTTCT 60.203 47.619 0.00 0.00 0.00 2.52
1428 1511 1.069636 CAGGCAAAGACGAGCAGTTTC 60.070 52.381 0.00 0.00 0.00 2.78
1429 1512 0.947244 CAGGCAAAGACGAGCAGTTT 59.053 50.000 0.00 0.00 0.00 2.66
1430 1513 0.886490 CCAGGCAAAGACGAGCAGTT 60.886 55.000 0.00 0.00 0.00 3.16
1431 1514 1.302033 CCAGGCAAAGACGAGCAGT 60.302 57.895 0.00 0.00 0.00 4.40
1434 1517 1.589716 AATGCCAGGCAAAGACGAGC 61.590 55.000 20.84 0.00 43.62 5.03
1437 1520 0.387622 CACAATGCCAGGCAAAGACG 60.388 55.000 20.84 7.78 43.62 4.18
1438 1521 0.668401 GCACAATGCCAGGCAAAGAC 60.668 55.000 20.84 8.19 43.62 3.01
1440 1523 0.947180 GTGCACAATGCCAGGCAAAG 60.947 55.000 20.84 16.47 44.23 2.77
1441 1524 1.069427 GTGCACAATGCCAGGCAAA 59.931 52.632 20.84 0.00 44.23 3.68
1442 1525 1.683418 TTGTGCACAATGCCAGGCAA 61.683 50.000 27.96 1.91 44.23 4.52
1443 1526 2.089887 CTTGTGCACAATGCCAGGCA 62.090 55.000 31.17 18.99 44.23 4.75
1444 1527 1.373748 CTTGTGCACAATGCCAGGC 60.374 57.895 31.17 3.66 44.23 4.85
1445 1528 0.892755 ATCTTGTGCACAATGCCAGG 59.107 50.000 31.17 18.70 44.23 4.45
1446 1529 1.816835 AGATCTTGTGCACAATGCCAG 59.183 47.619 31.17 19.67 44.23 4.85
1449 1532 2.229543 TCCAAGATCTTGTGCACAATGC 59.770 45.455 31.17 21.83 39.63 3.56
1450 1533 4.508461 TTCCAAGATCTTGTGCACAATG 57.492 40.909 31.17 24.26 38.85 2.82
1451 1534 4.768448 TCATTCCAAGATCTTGTGCACAAT 59.232 37.500 31.17 18.73 38.85 2.71
1452 1535 4.143543 TCATTCCAAGATCTTGTGCACAA 58.856 39.130 29.36 29.36 38.85 3.33
1455 1538 4.591929 TCATCATTCCAAGATCTTGTGCA 58.408 39.130 29.03 15.60 38.85 4.57
1496 1579 1.648467 GCGCCAGGATCCTGAAACAC 61.648 60.000 38.37 21.46 46.30 3.32
1497 1580 1.377202 GCGCCAGGATCCTGAAACA 60.377 57.895 38.37 0.00 46.30 2.83
1538 1623 0.809385 ATATCACGGGTATCGCGGAG 59.191 55.000 6.13 3.59 43.94 4.63
1620 1705 4.277174 ACAGAACTCAAACACACACACAAA 59.723 37.500 0.00 0.00 0.00 2.83
1670 2115 1.171308 CTGGCCACTCACTCAAATGG 58.829 55.000 0.00 0.00 35.17 3.16
1702 2147 3.974642 CCATTAGAGCCCCCTTAGTAAGT 59.025 47.826 9.05 0.00 0.00 2.24
1747 2193 0.611062 ATGCCAATGTCTGCACTGCT 60.611 50.000 1.98 0.00 40.88 4.24
1834 2280 1.884464 CATGATGACCGTGGGCTCG 60.884 63.158 0.00 0.00 0.00 5.03
1840 2286 3.932089 TGAATGTGTACATGATGACCGTG 59.068 43.478 0.00 0.00 36.56 4.94
1849 2295 5.556355 AGCTGAACATGAATGTGTACATG 57.444 39.130 0.00 0.00 46.11 3.21
1969 2415 0.831711 ACCTGCAATTGGACCAACCC 60.832 55.000 9.67 1.34 38.00 4.11
2022 2468 1.237533 GCACACACACACATCCATCA 58.762 50.000 0.00 0.00 0.00 3.07
2026 2472 1.518056 CCCTGCACACACACACATCC 61.518 60.000 0.00 0.00 0.00 3.51
2027 2473 0.819259 ACCCTGCACACACACACATC 60.819 55.000 0.00 0.00 0.00 3.06
2028 2474 0.819259 GACCCTGCACACACACACAT 60.819 55.000 0.00 0.00 0.00 3.21
2029 2475 1.451207 GACCCTGCACACACACACA 60.451 57.895 0.00 0.00 0.00 3.72
2030 2476 1.153168 AGACCCTGCACACACACAC 60.153 57.895 0.00 0.00 0.00 3.82
2031 2477 1.153188 CAGACCCTGCACACACACA 60.153 57.895 0.00 0.00 0.00 3.72
2050 2496 1.669115 CAAGAGGGCAGTCCACACG 60.669 63.158 0.00 0.00 38.24 4.49
2173 2619 3.036091 TGGTGTACCTACCTTGATAGCC 58.964 50.000 2.32 0.00 41.43 3.93
2284 2730 3.636300 CCACATTCACCTCAAAGAAACCA 59.364 43.478 0.00 0.00 0.00 3.67
2313 2760 7.176589 AGGGTACTTTGTGTTTTGAATCAAA 57.823 32.000 4.03 4.03 0.00 2.69
2314 2761 6.783708 AGGGTACTTTGTGTTTTGAATCAA 57.216 33.333 0.00 0.00 0.00 2.57
2317 2764 7.418337 AAGAAGGGTACTTTGTGTTTTGAAT 57.582 32.000 0.00 0.00 36.97 2.57
2319 2766 7.340256 TCTAAGAAGGGTACTTTGTGTTTTGA 58.660 34.615 0.00 0.00 36.97 2.69
2341 2788 5.067954 TGACTACAGTAGTGCACAACTCTA 58.932 41.667 18.41 0.00 40.56 2.43
2446 2893 5.849081 GCAAAATCACTGAATGTGCAATTTG 59.151 36.000 4.58 5.11 45.81 2.32
2450 2897 4.052608 CAGCAAAATCACTGAATGTGCAA 58.947 39.130 11.19 0.00 45.81 4.08
2495 2942 7.948278 ATTCGAGATTTAGGATAAGGAAACG 57.052 36.000 0.00 0.00 0.00 3.60
2504 2951 6.150140 GCCAAAGCATATTCGAGATTTAGGAT 59.850 38.462 0.00 0.00 39.53 3.24
2634 3081 6.086785 ACCGTCTATTAAATACAGAGAGCC 57.913 41.667 0.00 0.00 0.00 4.70
2667 3114 0.394352 CCAACCCAGGTATGTGAGCC 60.394 60.000 0.00 0.00 0.00 4.70
2711 3163 1.258445 TTCTCCCTCTCAGGAACGCC 61.258 60.000 0.00 0.00 37.67 5.68
2714 3166 5.422214 TTTATGTTCTCCCTCTCAGGAAC 57.578 43.478 0.00 0.00 37.67 3.62
2782 3234 2.161410 GCCAAATGACAACACGATAGCA 59.839 45.455 0.00 0.00 42.67 3.49
2881 3333 2.502947 TCATAGCATCTGCAGAACCAGT 59.497 45.455 22.50 0.00 45.16 4.00
2910 3365 2.579860 AGTGGAGGAGATTTGAGGCAAT 59.420 45.455 0.00 0.00 0.00 3.56
2919 3374 4.379302 AGCAAAGAAAGTGGAGGAGATT 57.621 40.909 0.00 0.00 0.00 2.40
3121 3576 2.091885 GGACCATGGATTAGGGCTGAAA 60.092 50.000 21.47 0.00 32.00 2.69
3187 3642 5.710099 TGTTTCAGAAGTCTGGTTGAGTTTT 59.290 36.000 8.42 0.00 43.91 2.43
3343 3798 3.188773 CACGCTGTGGTCGAAGTAA 57.811 52.632 0.00 0.00 0.00 2.24
3533 3989 2.726821 ACCAATTAGGCCACACATCAG 58.273 47.619 5.01 0.00 43.14 2.90
3721 4177 3.755628 GCCGTGGCCACTAGTCGA 61.756 66.667 32.28 0.00 34.56 4.20
3860 4316 9.114965 GCGATCAATTAATTTCAATCAGATCAG 57.885 33.333 16.44 12.13 33.40 2.90
3861 4317 8.623030 TGCGATCAATTAATTTCAATCAGATCA 58.377 29.630 16.44 3.31 33.40 2.92
3939 4395 5.856455 CGTTTAAGCCCTACATTTTGTGAAG 59.144 40.000 0.00 0.00 0.00 3.02
4049 4505 2.152830 GGCAGCAGATCATCAATCTCC 58.847 52.381 0.00 0.00 43.13 3.71
4145 4601 5.105310 TGCTGTAGGGATCTTCTTCAGTAAC 60.105 44.000 17.25 7.85 33.85 2.50
4446 4924 6.099341 CCTGCAAAGATTGGTAAATGGTAAC 58.901 40.000 0.00 0.00 0.00 2.50
4479 4957 5.172934 TCGACAAATGTTGTATGGTACTCC 58.827 41.667 0.92 0.00 45.52 3.85
4722 5200 0.537143 TCACCGCAGCAAGGTTGAAT 60.537 50.000 0.00 0.00 40.59 2.57
4800 5278 0.433492 CCGTCGTCAGCTAAACGTTG 59.567 55.000 17.35 12.00 40.86 4.10
4814 5292 5.753921 AGGATTAAAATTCTTCTAGCCGTCG 59.246 40.000 0.00 0.00 0.00 5.12
4871 5349 4.500887 GCCACATCAATATCTTGCTGCAAT 60.501 41.667 16.38 4.53 32.88 3.56
4874 5352 2.359848 TGCCACATCAATATCTTGCTGC 59.640 45.455 0.00 0.00 32.88 5.25
4961 5439 1.471119 TCTTCGGACTATTCAGGCGT 58.529 50.000 0.00 0.00 0.00 5.68
5102 5580 2.614446 CGTCCGTGGACTGTCTCGT 61.614 63.158 16.51 0.00 42.54 4.18
5132 5610 0.038744 CTTCACCCAGCTTGGATGGT 59.961 55.000 11.55 0.00 40.96 3.55
5200 5678 8.304596 CGATATAATTTACTTCCAGTAGCTCCA 58.695 37.037 0.00 0.00 31.47 3.86
5201 5679 8.521176 TCGATATAATTTACTTCCAGTAGCTCC 58.479 37.037 0.00 0.00 31.47 4.70
5248 5726 8.123639 ACCGTGCATAAGTAGACATCTTATAT 57.876 34.615 0.00 0.00 36.65 0.86
5434 5931 6.868864 TGCAGTTATGTAGAAAAGTGAGACTC 59.131 38.462 0.00 0.00 0.00 3.36
5532 6029 3.433615 ACATCGCTCAACTTAAGCTCAAC 59.566 43.478 1.29 0.00 37.62 3.18
5558 6055 7.672240 TCACATTCAACTGGTAATAGTACACA 58.328 34.615 2.37 0.00 31.21 3.72
5566 6063 9.959721 AGTTAAGTATCACATTCAACTGGTAAT 57.040 29.630 0.00 0.00 0.00 1.89
5580 6077 6.042208 AGGGAATAGGCTCAGTTAAGTATCAC 59.958 42.308 0.00 0.00 0.00 3.06
5614 6111 7.219726 CCATTTTAACCAACAAAAATTGTGCAC 59.780 33.333 10.75 10.75 44.59 4.57
5621 6118 8.567285 TGTTCACCATTTTAACCAACAAAAAT 57.433 26.923 0.00 0.00 36.08 1.82
5713 6211 7.849804 AGTAACATGTTCATCCATCAACTAC 57.150 36.000 15.85 2.74 0.00 2.73
5714 6212 8.100164 TCAAGTAACATGTTCATCCATCAACTA 58.900 33.333 15.85 0.00 0.00 2.24
5781 6280 0.610232 AAGCATGGGACTCAAGGCAC 60.610 55.000 5.29 0.00 33.77 5.01
5785 6284 2.486982 CAGTTGAAGCATGGGACTCAAG 59.513 50.000 0.00 0.00 0.00 3.02
5786 6285 2.507484 CAGTTGAAGCATGGGACTCAA 58.493 47.619 0.00 0.00 0.00 3.02
5787 6286 1.271543 CCAGTTGAAGCATGGGACTCA 60.272 52.381 0.00 0.00 0.00 3.41
5840 6339 1.375326 GGGCCACTTCGGAAGAACT 59.625 57.895 23.74 0.00 46.92 3.01
5924 6423 5.500546 AGGGTATTGGCTAGGCTATAAAC 57.499 43.478 19.21 15.18 0.00 2.01
5980 6492 1.699083 TCCAACTCAGTCATGCCTCAA 59.301 47.619 0.00 0.00 0.00 3.02
6030 6542 3.331478 AGGCTCAGATTGTCAGACAAG 57.669 47.619 20.55 8.31 41.94 3.16
6109 6621 0.911769 CCTTCCTACCATGTCCTGCA 59.088 55.000 0.00 0.00 0.00 4.41
6110 6622 1.204146 TCCTTCCTACCATGTCCTGC 58.796 55.000 0.00 0.00 0.00 4.85
6111 6623 2.171448 CCTTCCTTCCTACCATGTCCTG 59.829 54.545 0.00 0.00 0.00 3.86
6112 6624 2.225908 ACCTTCCTTCCTACCATGTCCT 60.226 50.000 0.00 0.00 0.00 3.85
6113 6625 2.197465 ACCTTCCTTCCTACCATGTCC 58.803 52.381 0.00 0.00 0.00 4.02
6114 6626 4.654262 TCATACCTTCCTTCCTACCATGTC 59.346 45.833 0.00 0.00 0.00 3.06
6115 6627 4.631234 TCATACCTTCCTTCCTACCATGT 58.369 43.478 0.00 0.00 0.00 3.21
6116 6628 5.545723 AGATCATACCTTCCTTCCTACCATG 59.454 44.000 0.00 0.00 0.00 3.66
6117 6629 5.545723 CAGATCATACCTTCCTTCCTACCAT 59.454 44.000 0.00 0.00 0.00 3.55
6118 6630 4.901849 CAGATCATACCTTCCTTCCTACCA 59.098 45.833 0.00 0.00 0.00 3.25
6119 6631 4.902448 ACAGATCATACCTTCCTTCCTACC 59.098 45.833 0.00 0.00 0.00 3.18
6120 6632 5.221541 CCACAGATCATACCTTCCTTCCTAC 60.222 48.000 0.00 0.00 0.00 3.18
6121 6633 4.901849 CCACAGATCATACCTTCCTTCCTA 59.098 45.833 0.00 0.00 0.00 2.94
6122 6634 3.713764 CCACAGATCATACCTTCCTTCCT 59.286 47.826 0.00 0.00 0.00 3.36
6125 6637 3.846588 ACACCACAGATCATACCTTCCTT 59.153 43.478 0.00 0.00 0.00 3.36
6141 6653 1.064952 GCAACAACACTACCACACCAC 59.935 52.381 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.