Multiple sequence alignment - TraesCS5B01G090900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G090900 chr5B 100.000 3034 0 0 1 3034 118419374 118422407 0.000000e+00 5603.0
1 TraesCS5B01G090900 chr5B 77.112 367 67 9 277 633 306421393 306421034 2.390000e-46 196.0
2 TraesCS5B01G090900 chr5B 77.112 367 67 9 277 633 306422131 306421772 2.390000e-46 196.0
3 TraesCS5B01G090900 chr5B 76.839 367 68 9 277 633 306419917 306419558 1.110000e-44 191.0
4 TraesCS5B01G090900 chr5B 76.839 367 68 9 277 633 306420655 306420296 1.110000e-44 191.0
5 TraesCS5B01G090900 chr5B 75.710 317 56 17 281 590 510495015 510495317 4.080000e-29 139.0
6 TraesCS5B01G090900 chr5D 91.255 2127 117 36 1 2086 108085444 108087542 0.000000e+00 2833.0
7 TraesCS5B01G090900 chr5D 91.014 957 58 8 2098 3034 108087712 108088660 0.000000e+00 1266.0
8 TraesCS5B01G090900 chr5A 91.847 1337 60 23 804 2117 111553753 111555063 0.000000e+00 1820.0
9 TraesCS5B01G090900 chr5A 88.758 765 40 16 2177 2897 111555068 111555830 0.000000e+00 894.0
10 TraesCS5B01G090900 chr5A 83.794 796 89 20 1 779 111552811 111553583 0.000000e+00 719.0
11 TraesCS5B01G090900 chr5A 77.112 367 70 9 277 633 359017971 359017609 1.840000e-47 200.0
12 TraesCS5B01G090900 chr5A 92.308 91 6 1 2945 3034 111555835 111555925 8.830000e-26 128.0
13 TraesCS5B01G090900 chr5A 72.243 526 87 38 19 494 146990325 146990841 1.150000e-19 108.0
14 TraesCS5B01G090900 chr3D 74.064 748 139 30 2 710 200461196 200460465 3.880000e-64 255.0
15 TraesCS5B01G090900 chr3D 76.407 462 89 15 277 724 16139874 16140329 6.540000e-57 231.0
16 TraesCS5B01G090900 chr1D 100.000 29 0 0 2416 2444 478981250 478981278 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G090900 chr5B 118419374 118422407 3033 False 5603.00 5603 100.00000 1 3034 1 chr5B.!!$F1 3033
1 TraesCS5B01G090900 chr5D 108085444 108088660 3216 False 2049.50 2833 91.13450 1 3034 2 chr5D.!!$F1 3033
2 TraesCS5B01G090900 chr5A 111552811 111555925 3114 False 890.25 1820 89.17675 1 3034 4 chr5A.!!$F2 3033
3 TraesCS5B01G090900 chr3D 200460465 200461196 731 True 255.00 255 74.06400 2 710 1 chr3D.!!$R1 708

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
64 66 0.036875 GACAAGGGCAAGTGTAGGCT 59.963 55.0 0.0 0.0 0.0 4.58 F
221 241 0.603569 ACTTCAACCTCTCGCACGAT 59.396 50.0 0.0 0.0 0.0 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1339 1526 0.460811 TCGTTGATGGCTAGCAGCTG 60.461 55.000 18.24 10.11 41.99 4.24 R
2215 2591 2.171725 GCACAATCGCCCTACCGTC 61.172 63.158 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 2.031120 CTTCAACAACAAGGGCAAGGA 58.969 47.619 0.00 0.00 0.00 3.36
51 53 0.675633 CAACAAGGGCAAGGACAAGG 59.324 55.000 0.00 0.00 0.00 3.61
58 60 1.662044 GCAAGGACAAGGGCAAGTG 59.338 57.895 0.00 0.00 0.00 3.16
59 61 1.109323 GCAAGGACAAGGGCAAGTGT 61.109 55.000 0.00 0.00 0.00 3.55
61 63 2.154462 CAAGGACAAGGGCAAGTGTAG 58.846 52.381 0.00 0.00 0.00 2.74
62 64 0.693049 AGGACAAGGGCAAGTGTAGG 59.307 55.000 0.00 0.00 0.00 3.18
63 65 0.960861 GGACAAGGGCAAGTGTAGGC 60.961 60.000 0.00 0.00 0.00 3.93
64 66 0.036875 GACAAGGGCAAGTGTAGGCT 59.963 55.000 0.00 0.00 0.00 4.58
67 69 1.481056 AAGGGCAAGTGTAGGCTCGT 61.481 55.000 0.00 0.00 35.08 4.18
71 73 2.152699 CAAGTGTAGGCTCGTCGCG 61.153 63.158 0.00 0.00 40.44 5.87
72 74 3.966026 AAGTGTAGGCTCGTCGCGC 62.966 63.158 0.00 0.00 40.44 6.86
73 75 4.477975 GTGTAGGCTCGTCGCGCT 62.478 66.667 5.56 0.00 40.44 5.92
74 76 4.476410 TGTAGGCTCGTCGCGCTG 62.476 66.667 5.56 0.00 40.44 5.18
121 140 2.348998 CACGGGCAAGGAGAGCTT 59.651 61.111 0.00 0.00 0.00 3.74
148 167 2.125326 CGGGACCGGCTCTACATCA 61.125 63.158 0.00 0.00 35.56 3.07
215 235 1.446272 GCCCGACTTCAACCTCTCG 60.446 63.158 0.00 0.00 0.00 4.04
221 241 0.603569 ACTTCAACCTCTCGCACGAT 59.396 50.000 0.00 0.00 0.00 3.73
224 244 1.014044 TCAACCTCTCGCACGATTGC 61.014 55.000 0.00 0.00 46.21 3.56
329 364 2.504032 CGCCATGACCCGGTGTAT 59.496 61.111 0.00 0.00 0.00 2.29
429 465 1.524863 CGAGGAGTCCTTGGTCGTGT 61.525 60.000 17.89 0.00 31.76 4.49
433 469 3.103911 GTCCTTGGTCGTGTCGCG 61.104 66.667 0.00 0.00 43.01 5.87
436 472 4.657824 CTTGGTCGTGTCGCGGGT 62.658 66.667 6.13 0.00 41.72 5.28
566 603 4.521062 GGCGCTCCAGCTGTCGAT 62.521 66.667 19.79 0.00 39.32 3.59
591 629 1.144503 GGGACTATGTCTACCCTCCGA 59.855 57.143 0.00 0.00 39.28 4.55
670 709 0.675522 CACTGGAATTACCCGCCGTT 60.676 55.000 0.00 0.00 38.00 4.44
691 730 1.602327 GGGAGAGGTACGTGTGGACC 61.602 65.000 0.00 0.00 35.83 4.46
712 751 2.314256 CGTCCTACGCGAGTGGATA 58.686 57.895 15.93 0.00 46.61 2.59
715 754 0.666913 TCCTACGCGAGTGGATAAGC 59.333 55.000 15.93 0.00 46.61 3.09
726 766 4.374702 GATAAGCGCGCGGCCATG 62.375 66.667 33.06 1.90 45.17 3.66
746 786 2.124736 AATGACATCCACGCCGGG 60.125 61.111 2.18 0.00 34.36 5.73
779 819 3.393360 CCTCGAGCAGGGAAAGGT 58.607 61.111 6.99 0.00 38.91 3.50
781 821 1.544825 CCTCGAGCAGGGAAAGGTGA 61.545 60.000 6.99 0.00 38.91 4.02
848 1032 4.643334 GGGTTGTATTTCACCCCTAACATC 59.357 45.833 0.00 0.00 44.24 3.06
853 1037 9.016438 GTTGTATTTCACCCCTAACATCTTTTA 57.984 33.333 0.00 0.00 0.00 1.52
855 1039 9.184523 TGTATTTCACCCCTAACATCTTTTATG 57.815 33.333 0.00 0.00 0.00 1.90
857 1041 8.664669 ATTTCACCCCTAACATCTTTTATGTT 57.335 30.769 8.30 8.30 43.74 2.71
858 1042 7.696992 TTCACCCCTAACATCTTTTATGTTC 57.303 36.000 6.64 0.00 41.81 3.18
859 1043 6.184789 TCACCCCTAACATCTTTTATGTTCC 58.815 40.000 6.64 0.00 41.81 3.62
898 1084 7.363355 CGGTAAGATATTGGATACTCAGCTCAT 60.363 40.741 0.00 0.00 37.61 2.90
899 1085 7.763528 GGTAAGATATTGGATACTCAGCTCATG 59.236 40.741 0.00 0.00 37.61 3.07
913 1099 2.239150 AGCTCATGAGTCAGCCAATTCT 59.761 45.455 23.38 5.55 36.17 2.40
1110 1297 3.349006 CGCTTGAGCACGCTTGGT 61.349 61.111 3.65 0.00 42.21 3.67
1290 1477 2.592308 GGCCTCGGCATCTTCCTT 59.408 61.111 10.51 0.00 44.11 3.36
1409 1596 4.184629 CCTCTTAGAAAATGTCTGTCGGG 58.815 47.826 0.00 0.00 37.12 5.14
1416 1603 3.881937 AAATGTCTGTCGGGTAGTACC 57.118 47.619 11.20 11.20 37.60 3.34
1464 1653 8.936864 GCTGCTGTTTAATCGGATATACTAATT 58.063 33.333 0.00 0.00 0.00 1.40
1486 1675 6.691754 TTGTTAGTGAATTGCAAGTCTGAA 57.308 33.333 25.47 14.50 0.00 3.02
1500 1689 2.806244 AGTCTGAACAAATGTGTACCGC 59.194 45.455 0.00 0.00 36.80 5.68
1520 1709 5.811613 ACCGCAATGATATTTGGAAACATTG 59.188 36.000 0.00 0.00 45.64 2.82
1533 1723 8.870160 TTTGGAAACATTGAGTGTAAAATCTG 57.130 30.769 0.00 0.00 41.14 2.90
1542 1732 7.724305 TTGAGTGTAAAATCTGGAGTTGTAC 57.276 36.000 0.00 0.00 0.00 2.90
1548 1738 9.216117 GTGTAAAATCTGGAGTTGTACAAGTAT 57.784 33.333 15.87 3.46 0.00 2.12
1726 1937 1.812571 GAGAAATGAGAGGCGCCAAAA 59.187 47.619 31.54 11.72 0.00 2.44
2129 2505 9.623000 GTAAAACTACTGGTCCAATATTACCAT 57.377 33.333 9.97 4.75 44.56 3.55
2158 2534 3.877559 TCATTGCCCACATACTCTCTTG 58.122 45.455 0.00 0.00 0.00 3.02
2168 2544 5.239306 CCACATACTCTCTTGTTGCTTTGAA 59.761 40.000 0.00 0.00 0.00 2.69
2170 2546 7.365741 CACATACTCTCTTGTTGCTTTGAATT 58.634 34.615 0.00 0.00 0.00 2.17
2171 2547 7.864379 CACATACTCTCTTGTTGCTTTGAATTT 59.136 33.333 0.00 0.00 0.00 1.82
2172 2548 8.416329 ACATACTCTCTTGTTGCTTTGAATTTT 58.584 29.630 0.00 0.00 0.00 1.82
2173 2549 9.252962 CATACTCTCTTGTTGCTTTGAATTTTT 57.747 29.630 0.00 0.00 0.00 1.94
2215 2591 5.362556 ACTTGCTAGCTTGTGTTTATGTG 57.637 39.130 17.23 0.00 0.00 3.21
2352 2735 3.274288 GCTTGGATTGGACTAGTTCAGG 58.726 50.000 3.55 0.00 0.00 3.86
2377 2760 2.028112 CCCCTGTGAAAGATCGTCTCAA 60.028 50.000 5.93 0.00 0.00 3.02
2387 2770 3.257393 AGATCGTCTCAATGCAGAACAC 58.743 45.455 0.00 0.00 0.00 3.32
2445 2828 8.239314 ACTATTGATTCACTAACAAGTGCAATG 58.761 33.333 14.66 0.00 39.49 2.82
2505 2888 6.570692 GTTCCATCTTCAGCATTTTCATCAT 58.429 36.000 0.00 0.00 0.00 2.45
2538 2929 5.848286 ATGGCCAGACAGATTATATTCCA 57.152 39.130 13.05 0.00 0.00 3.53
2542 2933 3.681897 CCAGACAGATTATATTCCAGCGC 59.318 47.826 0.00 0.00 0.00 5.92
2621 3012 1.261480 TCCTGAGAGACAGTCAAGCC 58.739 55.000 2.66 0.00 44.40 4.35
2660 3051 5.045651 TCAGGTCAAGCAAGAAATCTCCATA 60.046 40.000 0.00 0.00 0.00 2.74
2785 3208 7.640616 TGACAAAATGTTACAATTCATGCAG 57.359 32.000 0.00 0.00 0.00 4.41
2807 3231 6.961554 GCAGTTTAAAATACCGTGAATCAGAG 59.038 38.462 0.00 0.00 0.00 3.35
2821 3245 6.204301 CGTGAATCAGAGAGGCATGAAAATAT 59.796 38.462 0.00 0.00 0.00 1.28
2849 3274 3.075884 GCAATTTGTGTTGGCAATCCAT 58.924 40.909 1.92 0.00 43.05 3.41
2867 3292 2.513753 CATGTTTTGTGTGGGGAGCTA 58.486 47.619 0.00 0.00 0.00 3.32
2887 3312 0.031857 CTATCTGCCACTCTCTGCGG 59.968 60.000 0.00 0.00 35.14 5.69
2888 3313 2.021068 TATCTGCCACTCTCTGCGGC 62.021 60.000 0.00 0.00 43.83 6.53
2905 3330 1.298339 GCATATTGTTGGTCGCGCC 60.298 57.895 0.00 6.97 37.90 6.53
2907 3332 1.078072 ATATTGTTGGTCGCGCCCA 60.078 52.632 3.91 3.91 36.04 5.36
2919 3344 2.750888 GCGCCCACGAAGGATTGAC 61.751 63.158 0.00 0.00 43.93 3.18
3014 3439 4.803613 CGCAAAACTTTAAGAACCAAAGCT 59.196 37.500 0.00 0.00 36.63 3.74
3018 3443 7.167635 GCAAAACTTTAAGAACCAAAGCTAGAC 59.832 37.037 0.00 0.00 36.63 2.59
3019 3444 8.406297 CAAAACTTTAAGAACCAAAGCTAGACT 58.594 33.333 0.00 0.00 36.63 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 48 0.036875 GAGCCTACACTTGCCCTTGT 59.963 55.000 0.00 0.00 0.00 3.16
51 53 1.805945 CGACGAGCCTACACTTGCC 60.806 63.158 0.00 0.00 0.00 4.52
204 224 1.428448 CAATCGTGCGAGAGGTTGAA 58.572 50.000 0.00 0.00 0.00 2.69
436 472 3.068691 CCTTCGCCTCCTCGTCCA 61.069 66.667 0.00 0.00 0.00 4.02
566 603 1.410648 GGGTAGACATAGTCCCCGTCA 60.411 57.143 0.00 0.00 34.32 4.35
591 629 3.695606 AGGCAGTGTCGGCGATGT 61.696 61.111 14.79 0.00 36.37 3.06
643 682 1.282157 GGTAATTCCAGTGTGGCCTCT 59.718 52.381 3.32 0.00 37.47 3.69
652 691 0.675522 CAACGGCGGGTAATTCCAGT 60.676 55.000 13.24 0.00 38.11 4.00
670 709 1.608336 CCACACGTACCTCTCCCCA 60.608 63.158 0.00 0.00 0.00 4.96
700 739 2.582498 GCGCTTATCCACTCGCGT 60.582 61.111 5.77 0.00 46.56 6.01
715 754 4.892379 CATTCACATGGCCGCGCG 62.892 66.667 25.67 25.67 0.00 6.86
718 757 0.029834 GATGTCATTCACATGGCCGC 59.970 55.000 0.00 0.00 46.53 6.53
726 766 1.705337 CCGGCGTGGATGTCATTCAC 61.705 60.000 13.59 13.59 42.00 3.18
729 769 2.124736 CCCGGCGTGGATGTCATT 60.125 61.111 6.01 0.00 42.00 2.57
746 786 4.509737 GGTACGTCGCCTCCTGCC 62.510 72.222 0.00 0.00 36.24 4.85
757 797 0.896940 TTTCCCTGCTCGAGGTACGT 60.897 55.000 15.58 0.00 40.87 3.57
772 812 1.377333 CCCGCTCCTTCACCTTTCC 60.377 63.158 0.00 0.00 0.00 3.13
781 821 4.394712 CTTGTCGGCCCGCTCCTT 62.395 66.667 0.00 0.00 0.00 3.36
829 1013 9.184523 CATAAAAGATGTTAGGGGTGAAATACA 57.815 33.333 0.00 0.00 0.00 2.29
845 1029 4.082245 ACCCGCAAAGGAACATAAAAGATG 60.082 41.667 0.00 0.00 45.00 2.90
848 1032 3.934457 ACCCGCAAAGGAACATAAAAG 57.066 42.857 0.00 0.00 45.00 2.27
853 1037 1.674817 CGAGTACCCGCAAAGGAACAT 60.675 52.381 0.00 0.00 45.00 2.71
855 1039 1.017701 CCGAGTACCCGCAAAGGAAC 61.018 60.000 0.00 0.00 45.00 3.62
857 1041 0.611618 TACCGAGTACCCGCAAAGGA 60.612 55.000 0.00 0.00 45.00 3.36
858 1042 0.247185 TTACCGAGTACCCGCAAAGG 59.753 55.000 0.00 0.00 40.63 3.11
859 1043 1.203052 TCTTACCGAGTACCCGCAAAG 59.797 52.381 0.00 0.00 0.00 2.77
898 1084 2.995283 CCATGAGAATTGGCTGACTCA 58.005 47.619 0.00 0.00 42.26 3.41
982 1168 2.310538 CATGGGGCTATGGGAGAAAAC 58.689 52.381 0.00 0.00 0.00 2.43
1110 1297 2.687805 CGTGACGCGGAAGAGAGGA 61.688 63.158 12.47 0.00 36.85 3.71
1269 1456 2.125106 AAGATGCCGAGGCCGAAC 60.125 61.111 12.05 0.71 41.09 3.95
1339 1526 0.460811 TCGTTGATGGCTAGCAGCTG 60.461 55.000 18.24 10.11 41.99 4.24
1409 1596 7.519970 GCAGCCACAACATTATTATGGTACTAC 60.520 40.741 0.00 0.00 36.01 2.73
1416 1603 4.613944 CCAGCAGCCACAACATTATTATG 58.386 43.478 0.00 0.00 37.79 1.90
1464 1653 5.588246 TGTTCAGACTTGCAATTCACTAACA 59.412 36.000 17.88 18.40 0.00 2.41
1486 1675 6.449635 AATATCATTGCGGTACACATTTGT 57.550 33.333 0.00 0.00 40.02 2.83
1500 1689 8.991243 ACACTCAATGTTTCCAAATATCATTG 57.009 30.769 9.10 9.10 38.98 2.82
1520 1709 7.441458 ACTTGTACAACTCCAGATTTTACACTC 59.559 37.037 3.59 0.00 0.00 3.51
1548 1738 8.450964 CGCTCAAGAATCTTCTTAACCATTTTA 58.549 33.333 4.93 0.00 45.23 1.52
1676 1887 8.495148 CAAGTTGAAAAAGCTTGTGTTTAACTT 58.505 29.630 22.01 22.01 36.00 2.66
1689 1900 9.339492 CTCATTTCTCTATCAAGTTGAAAAAGC 57.661 33.333 10.14 0.00 33.55 3.51
1726 1937 3.230134 TGTAAAACCATGCTCCTTGCTT 58.770 40.909 0.00 0.00 43.37 3.91
1836 2054 4.934602 ACAACAACAAAAAGACACCAATGG 59.065 37.500 0.00 0.00 0.00 3.16
2092 2310 8.480501 GGACCAGTAGTTTTACCTTGTATATCA 58.519 37.037 0.00 0.00 0.00 2.15
2093 2311 8.480501 TGGACCAGTAGTTTTACCTTGTATATC 58.519 37.037 0.00 0.00 0.00 1.63
2095 2313 7.795534 TGGACCAGTAGTTTTACCTTGTATA 57.204 36.000 0.00 0.00 0.00 1.47
2096 2314 6.691255 TGGACCAGTAGTTTTACCTTGTAT 57.309 37.500 0.00 0.00 0.00 2.29
2129 2505 5.754782 AGTATGTGGGCAATGAAATGAGTA 58.245 37.500 0.00 0.00 0.00 2.59
2215 2591 2.171725 GCACAATCGCCCTACCGTC 61.172 63.158 0.00 0.00 0.00 4.79
2242 2618 2.936498 CCATTGAGCCTAACACTAACCG 59.064 50.000 0.00 0.00 0.00 4.44
2309 2685 4.141733 GCAATACACATAAGCCCCCAAAAT 60.142 41.667 0.00 0.00 0.00 1.82
2314 2697 2.362077 CAAGCAATACACATAAGCCCCC 59.638 50.000 0.00 0.00 0.00 5.40
2352 2735 1.303309 CGATCTTTCACAGGGGATGC 58.697 55.000 0.00 0.00 0.00 3.91
2445 2828 2.033801 AGCGAACCAATTATGCATGCTC 59.966 45.455 20.33 3.41 0.00 4.26
2505 2888 3.295093 TGTCTGGCCATTTGTTTCTTGA 58.705 40.909 5.51 0.00 0.00 3.02
2538 2929 1.024579 CCTTACATTCGGTTGGCGCT 61.025 55.000 7.64 0.00 0.00 5.92
2542 2933 1.035385 GCCCCCTTACATTCGGTTGG 61.035 60.000 0.00 0.00 0.00 3.77
2621 3012 3.071023 TGACCTGACCTACAGTTGAAAGG 59.929 47.826 0.00 4.48 44.40 3.11
2660 3051 0.817654 TGTCGCAGAGATGACGGATT 59.182 50.000 0.00 0.00 36.95 3.01
2719 3115 6.998968 AGATTTTGGTTTGTTTGATTGCAA 57.001 29.167 0.00 0.00 0.00 4.08
2785 3208 7.676572 GCCTCTCTGATTCACGGTATTTTAAAC 60.677 40.741 0.00 0.00 0.00 2.01
2794 3218 1.134580 CATGCCTCTCTGATTCACGGT 60.135 52.381 0.00 0.00 0.00 4.83
2807 3231 7.542534 TTGCAATGAAATATTTTCATGCCTC 57.457 32.000 20.69 11.79 38.96 4.70
2821 3245 3.943381 TGCCAACACAAATTGCAATGAAA 59.057 34.783 13.82 0.00 0.00 2.69
2849 3274 1.493022 AGTAGCTCCCCACACAAAACA 59.507 47.619 0.00 0.00 0.00 2.83
2867 3292 0.743688 CGCAGAGAGTGGCAGATAGT 59.256 55.000 0.00 0.00 0.00 2.12
2887 3312 1.298339 GGCGCGACCAACAATATGC 60.298 57.895 12.10 0.00 38.86 3.14
2888 3313 1.355210 GGGCGCGACCAACAATATG 59.645 57.895 30.38 0.00 42.05 1.78
2890 3315 2.036006 GTGGGCGCGACCAACAATA 61.036 57.895 40.01 9.49 42.77 1.90
2905 3330 0.037590 TTGGGGTCAATCCTTCGTGG 59.962 55.000 0.00 0.00 36.25 4.94
2907 3332 1.358152 TCTTGGGGTCAATCCTTCGT 58.642 50.000 0.00 0.00 36.25 3.85
2911 3336 3.044894 GAGAGATCTTGGGGTCAATCCT 58.955 50.000 0.00 0.00 36.25 3.24
2914 3339 1.139853 GCGAGAGATCTTGGGGTCAAT 59.860 52.381 0.00 0.00 31.75 2.57
2919 3344 0.179089 CTGTGCGAGAGATCTTGGGG 60.179 60.000 0.00 0.00 0.00 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.