Multiple sequence alignment - TraesCS5B01G090300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G090300 chr5B 100.000 4178 0 0 1 4178 116832488 116828311 0.000000e+00 7716.0
1 TraesCS5B01G090300 chr5D 94.863 2375 116 3 825 3193 107554118 107551744 0.000000e+00 3705.0
2 TraesCS5B01G090300 chr5D 90.271 442 29 4 2 436 107555145 107554711 2.180000e-157 566.0
3 TraesCS5B01G090300 chr5D 89.213 343 25 9 496 833 107554626 107554291 6.460000e-113 418.0
4 TraesCS5B01G090300 chr5D 90.625 64 6 0 163 226 339765429 339765492 7.440000e-13 86.1
5 TraesCS5B01G090300 chr5A 94.276 2376 126 6 874 3247 110354570 110352203 0.000000e+00 3626.0
6 TraesCS5B01G090300 chr5A 90.618 437 28 10 452 878 110355404 110354971 6.060000e-158 568.0
7 TraesCS5B01G090300 chr5A 88.889 405 28 7 2 389 110355886 110355482 2.260000e-132 483.0
8 TraesCS5B01G090300 chr4B 90.973 2271 142 22 955 3193 28536527 28538766 0.000000e+00 3000.0
9 TraesCS5B01G090300 chr7B 80.486 2224 349 44 994 3180 683105746 683107921 0.000000e+00 1624.0
10 TraesCS5B01G090300 chr7B 84.192 1164 157 19 2032 3173 683151510 683152668 0.000000e+00 1105.0
11 TraesCS5B01G090300 chr7B 84.160 1149 164 13 2046 3180 683230473 683229329 0.000000e+00 1098.0
12 TraesCS5B01G090300 chr7B 78.454 854 154 17 965 1809 683243819 683242987 7.950000e-147 531.0
13 TraesCS5B01G090300 chr7B 84.211 76 10 2 144 218 242911713 242911787 5.790000e-09 73.1
14 TraesCS5B01G090300 chr7A 80.392 2193 329 52 1038 3180 694254311 694252170 0.000000e+00 1574.0
15 TraesCS5B01G090300 chr7A 84.247 1149 163 11 2046 3180 694357182 694356038 0.000000e+00 1103.0
16 TraesCS5B01G090300 chr7A 78.256 860 152 31 965 1809 694375911 694375072 1.720000e-143 520.0
17 TraesCS5B01G090300 chr7A 78.204 835 151 18 988 1809 694331914 694331098 4.820000e-139 505.0
18 TraesCS5B01G090300 chr7A 84.706 85 13 0 739 823 558094060 558093976 7.440000e-13 86.1
19 TraesCS5B01G090300 chr7D 79.610 2256 355 52 965 3176 602751530 602749336 0.000000e+00 1520.0
20 TraesCS5B01G090300 chr7D 84.635 1152 159 14 2046 3183 602722550 602721403 0.000000e+00 1131.0
21 TraesCS5B01G090300 chr7D 85.685 992 136 4 2032 3017 602627491 602628482 0.000000e+00 1040.0
22 TraesCS5B01G090300 chr7D 84.975 985 138 7 2043 3019 613232366 613231384 0.000000e+00 990.0
23 TraesCS5B01G090300 chr7D 79.058 764 142 10 1052 1809 602673504 602672753 3.730000e-140 508.0
24 TraesCS5B01G090300 chr7D 79.755 326 39 21 499 801 522511413 522511734 1.180000e-50 211.0
25 TraesCS5B01G090300 chr7D 85.124 121 17 1 106 226 123221573 123221454 5.670000e-24 122.0
26 TraesCS5B01G090300 chr2D 92.526 776 40 8 3403 4173 626269552 626268790 0.000000e+00 1096.0
27 TraesCS5B01G090300 chr6D 85.124 121 17 1 106 226 13010846 13010965 5.670000e-24 122.0
28 TraesCS5B01G090300 chr6A 83.000 100 16 1 684 783 60544009 60544107 5.750000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G090300 chr5B 116828311 116832488 4177 True 7716 7716 100.000 1 4178 1 chr5B.!!$R1 4177
1 TraesCS5B01G090300 chr5D 107551744 107555145 3401 True 1563 3705 91.449 2 3193 3 chr5D.!!$R1 3191
2 TraesCS5B01G090300 chr5A 110352203 110355886 3683 True 1559 3626 91.261 2 3247 3 chr5A.!!$R1 3245
3 TraesCS5B01G090300 chr4B 28536527 28538766 2239 False 3000 3000 90.973 955 3193 1 chr4B.!!$F1 2238
4 TraesCS5B01G090300 chr7B 683105746 683107921 2175 False 1624 1624 80.486 994 3180 1 chr7B.!!$F2 2186
5 TraesCS5B01G090300 chr7B 683151510 683152668 1158 False 1105 1105 84.192 2032 3173 1 chr7B.!!$F3 1141
6 TraesCS5B01G090300 chr7B 683229329 683230473 1144 True 1098 1098 84.160 2046 3180 1 chr7B.!!$R1 1134
7 TraesCS5B01G090300 chr7B 683242987 683243819 832 True 531 531 78.454 965 1809 1 chr7B.!!$R2 844
8 TraesCS5B01G090300 chr7A 694252170 694254311 2141 True 1574 1574 80.392 1038 3180 1 chr7A.!!$R2 2142
9 TraesCS5B01G090300 chr7A 694356038 694357182 1144 True 1103 1103 84.247 2046 3180 1 chr7A.!!$R4 1134
10 TraesCS5B01G090300 chr7A 694375072 694375911 839 True 520 520 78.256 965 1809 1 chr7A.!!$R5 844
11 TraesCS5B01G090300 chr7A 694331098 694331914 816 True 505 505 78.204 988 1809 1 chr7A.!!$R3 821
12 TraesCS5B01G090300 chr7D 602749336 602751530 2194 True 1520 1520 79.610 965 3176 1 chr7D.!!$R4 2211
13 TraesCS5B01G090300 chr7D 602721403 602722550 1147 True 1131 1131 84.635 2046 3183 1 chr7D.!!$R3 1137
14 TraesCS5B01G090300 chr7D 602627491 602628482 991 False 1040 1040 85.685 2032 3017 1 chr7D.!!$F2 985
15 TraesCS5B01G090300 chr7D 613231384 613232366 982 True 990 990 84.975 2043 3019 1 chr7D.!!$R5 976
16 TraesCS5B01G090300 chr7D 602672753 602673504 751 True 508 508 79.058 1052 1809 1 chr7D.!!$R2 757
17 TraesCS5B01G090300 chr2D 626268790 626269552 762 True 1096 1096 92.526 3403 4173 1 chr2D.!!$R1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
623 713 0.586319 CTGCGTCCAAACAATGACGT 59.414 50.0 12.80 0.0 42.28 4.34 F
1785 2520 0.945099 CCGAGCTGCACGAGATACTA 59.055 55.0 20.67 0.0 0.00 1.82 F
2040 2817 0.248134 ATAGCGACGACGAAGAGCAC 60.248 55.0 12.29 0.0 42.66 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1957 2716 0.315886 TGTCGCCGCCATATCGTTAT 59.684 50.0 0.0 0.0 0.0 1.89 R
3107 3927 0.038526 GGAAGAAAGAGTGGCGTCGA 60.039 55.0 0.0 0.0 0.0 4.20 R
3247 4071 0.395312 TTGTTTCCAGTCGAGGTCCC 59.605 55.0 0.0 0.0 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 47 1.003866 GACTTCGTCTTGTGCAACCAC 60.004 52.381 0.00 0.00 42.40 4.16
139 147 2.868583 CGATGCATTCTGGACGATTTCT 59.131 45.455 0.00 0.00 0.00 2.52
176 185 1.142465 CAAGCCATCCATGCCTAGTCT 59.858 52.381 0.00 0.00 0.00 3.24
219 228 1.702957 TCCTCCCATCGTCCAAAGTTT 59.297 47.619 0.00 0.00 0.00 2.66
236 245 2.427095 AGTTTGGCTGGAAAGTGTTGTC 59.573 45.455 0.00 0.00 0.00 3.18
242 251 3.191371 GGCTGGAAAGTGTTGTCCATAAG 59.809 47.826 0.00 0.00 42.99 1.73
243 252 3.821033 GCTGGAAAGTGTTGTCCATAAGT 59.179 43.478 0.00 0.00 42.99 2.24
244 253 5.001232 GCTGGAAAGTGTTGTCCATAAGTA 58.999 41.667 0.00 0.00 42.99 2.24
245 254 5.472137 GCTGGAAAGTGTTGTCCATAAGTAA 59.528 40.000 0.00 0.00 42.99 2.24
246 255 6.151144 GCTGGAAAGTGTTGTCCATAAGTAAT 59.849 38.462 0.00 0.00 42.99 1.89
247 256 7.309194 GCTGGAAAGTGTTGTCCATAAGTAATT 60.309 37.037 0.00 0.00 42.99 1.40
248 257 8.106247 TGGAAAGTGTTGTCCATAAGTAATTC 57.894 34.615 0.00 0.00 39.04 2.17
249 258 7.175990 TGGAAAGTGTTGTCCATAAGTAATTCC 59.824 37.037 0.00 0.00 39.04 3.01
323 345 5.278561 GGTGACCATTTCAAATTTGACCGTA 60.279 40.000 20.35 3.23 36.83 4.02
335 357 6.780706 AATTTGACCGTAACAACTGACTAG 57.219 37.500 0.00 0.00 0.00 2.57
352 377 8.068892 ACTGACTAGTCCACTAAGATTTTAGG 57.931 38.462 20.11 0.00 35.39 2.69
355 380 7.844779 TGACTAGTCCACTAAGATTTTAGGGAT 59.155 37.037 20.11 4.67 41.91 3.85
360 385 6.542735 GTCCACTAAGATTTTAGGGATCCAAC 59.457 42.308 15.23 0.00 41.91 3.77
364 389 9.277783 CACTAAGATTTTAGGGATCCAACATAG 57.722 37.037 15.23 5.65 41.91 2.23
369 394 7.570607 AGATTTTAGGGATCCAACATAGAGACT 59.429 37.037 15.23 0.00 0.00 3.24
419 444 1.085501 GCCGGCCGTCGAAAATCTTA 61.086 55.000 26.12 0.00 42.43 2.10
447 472 3.972227 CGGAGGTCAAGTTGCTGG 58.028 61.111 0.00 0.00 0.00 4.85
448 473 2.328099 CGGAGGTCAAGTTGCTGGC 61.328 63.158 0.00 0.00 0.00 4.85
459 499 2.222027 AGTTGCTGGCAGTCTAAACAC 58.778 47.619 17.16 2.95 0.00 3.32
460 500 1.946768 GTTGCTGGCAGTCTAAACACA 59.053 47.619 17.16 0.00 0.00 3.72
512 552 4.451150 CTAGGCGGCTGCGTCCAA 62.451 66.667 23.55 0.00 44.10 3.53
524 564 1.347707 TGCGTCCAAGGAAGAATGAGT 59.652 47.619 6.22 0.00 0.00 3.41
526 567 2.354203 GCGTCCAAGGAAGAATGAGTCT 60.354 50.000 6.22 0.00 38.69 3.24
531 572 3.131223 CCAAGGAAGAATGAGTCTAGCGA 59.869 47.826 0.00 0.00 34.56 4.93
532 573 4.202202 CCAAGGAAGAATGAGTCTAGCGAT 60.202 45.833 0.00 0.00 34.56 4.58
533 574 4.582701 AGGAAGAATGAGTCTAGCGATG 57.417 45.455 0.00 0.00 34.56 3.84
537 578 4.759130 AAGAATGAGTCTAGCGATGGGCA 61.759 47.826 0.00 0.00 39.17 5.36
567 614 1.282875 GGCTGCGTCAAGGAACAAC 59.717 57.895 0.00 0.00 0.00 3.32
623 713 0.586319 CTGCGTCCAAACAATGACGT 59.414 50.000 12.80 0.00 42.28 4.34
709 799 4.104831 AGGACAAATCTACCCTAACAGCT 58.895 43.478 0.00 0.00 0.00 4.24
733 823 8.254508 GCTAATTACCAACATATCCTAGAGAGG 58.745 40.741 0.00 0.00 45.35 3.69
749 839 5.297569 AGAGAGGGAAAAATTAGGGATCG 57.702 43.478 0.00 0.00 0.00 3.69
750 840 4.103311 AGAGAGGGAAAAATTAGGGATCGG 59.897 45.833 0.00 0.00 0.00 4.18
805 895 9.730705 CCCATCATTTTCAGTAGTATGATGTAT 57.269 33.333 17.64 0.00 46.55 2.29
830 1102 9.830975 ATTGTAAAAAGCCTCAACATTTTTAGT 57.169 25.926 3.13 0.00 38.41 2.24
976 1658 3.057946 CCTTGTTTTCTAGTGCTCAAGCC 60.058 47.826 0.00 0.00 41.18 4.35
1029 1719 1.072678 TCGTCGTCCCAGTCTCACT 59.927 57.895 0.00 0.00 0.00 3.41
1095 1791 1.836802 GCCCTGTCTCTCTCCTTCAAT 59.163 52.381 0.00 0.00 0.00 2.57
1146 1842 2.480555 GGCGCGTCCATCAACTTG 59.519 61.111 8.43 0.00 34.01 3.16
1785 2520 0.945099 CCGAGCTGCACGAGATACTA 59.055 55.000 20.67 0.00 0.00 1.82
1817 2552 2.268280 CTCCACTCTGCAGCTGGG 59.732 66.667 23.09 17.07 0.00 4.45
1866 2601 4.697756 CCGCCGGCTCAACTTCCA 62.698 66.667 26.68 0.00 0.00 3.53
1867 2602 2.668212 CGCCGGCTCAACTTCCAA 60.668 61.111 26.68 0.00 0.00 3.53
1880 2639 1.242076 CTTCCAACTCCAACCAGCAG 58.758 55.000 0.00 0.00 0.00 4.24
1899 2658 2.285756 CAGCAAGCACAAAATGTTGGTG 59.714 45.455 0.00 0.00 39.32 4.17
1902 2661 2.600470 AGCACAAAATGTTGGTGGTG 57.400 45.000 0.00 0.00 39.22 4.17
1918 2677 1.101331 GGTGACCCTACTGTCCGTAG 58.899 60.000 0.00 0.00 44.26 3.51
1920 2679 1.471684 GTGACCCTACTGTCCGTAGTG 59.528 57.143 1.36 0.00 43.34 2.74
1957 2716 0.394216 GCTGGTATGTGTGGCCATGA 60.394 55.000 9.72 0.00 0.00 3.07
1978 2740 3.036084 CGATATGGCGGCGACACC 61.036 66.667 22.09 9.87 0.00 4.16
2007 2769 6.906157 AGAAGATCAAAAAGAGCAAATGGA 57.094 33.333 0.00 0.00 34.30 3.41
2037 2814 1.328069 AGTGATAGCGACGACGAAGAG 59.672 52.381 12.29 0.00 42.66 2.85
2040 2817 0.248134 ATAGCGACGACGAAGAGCAC 60.248 55.000 12.29 0.00 42.66 4.40
2180 2957 3.126729 GCTTCGGTAGCGTTTACCA 57.873 52.632 14.79 0.00 40.71 3.25
2295 3100 0.331954 AGGAGTTCGAGGCAGAGGTA 59.668 55.000 0.00 0.00 0.00 3.08
2298 3103 2.093106 GAGTTCGAGGCAGAGGTAAGA 58.907 52.381 0.00 0.00 0.00 2.10
2438 3246 4.246712 ACAGCAAAGATGGATTCCTGAT 57.753 40.909 3.95 0.00 0.00 2.90
3195 4019 3.829886 TGATTGATTTCCTGTTGCGTC 57.170 42.857 0.00 0.00 0.00 5.19
3197 4021 0.237235 TTGATTTCCTGTTGCGTCGC 59.763 50.000 11.10 11.10 0.00 5.19
3198 4022 1.225745 GATTTCCTGTTGCGTCGCG 60.226 57.895 13.38 0.00 0.00 5.87
3234 4058 6.258160 CGCTACAGTTATTTTGAAGGATTGG 58.742 40.000 0.00 0.00 0.00 3.16
3242 4066 3.880846 GAAGGATTGGGCGCTGCG 61.881 66.667 19.17 19.17 0.00 5.18
3247 4071 3.386867 GATTGGGCGCTGCGTTGAG 62.387 63.158 24.04 0.00 0.00 3.02
3253 4077 4.379243 CGCTGCGTTGAGGGACCT 62.379 66.667 14.93 0.00 0.00 3.85
3254 4078 2.435059 GCTGCGTTGAGGGACCTC 60.435 66.667 11.44 11.44 43.01 3.85
3255 4079 2.125912 CTGCGTTGAGGGACCTCG 60.126 66.667 13.32 3.93 45.48 4.63
3256 4080 2.599281 TGCGTTGAGGGACCTCGA 60.599 61.111 13.32 8.98 45.48 4.04
3260 4084 4.113617 TTGAGGGACCTCGACTGG 57.886 61.111 13.32 0.00 45.48 4.00
3261 4085 1.463375 TTGAGGGACCTCGACTGGA 59.537 57.895 13.32 0.00 45.48 3.86
3262 4086 0.178944 TTGAGGGACCTCGACTGGAA 60.179 55.000 13.32 0.00 45.48 3.53
3263 4087 0.178944 TGAGGGACCTCGACTGGAAA 60.179 55.000 13.32 0.00 45.48 3.13
3264 4088 0.246910 GAGGGACCTCGACTGGAAAC 59.753 60.000 2.05 0.00 33.06 2.78
3265 4089 0.471211 AGGGACCTCGACTGGAAACA 60.471 55.000 0.00 0.00 39.59 2.83
3266 4090 0.395312 GGGACCTCGACTGGAAACAA 59.605 55.000 0.00 0.00 42.06 2.83
3267 4091 1.202722 GGGACCTCGACTGGAAACAAA 60.203 52.381 0.00 0.00 42.06 2.83
3268 4092 2.567985 GGACCTCGACTGGAAACAAAA 58.432 47.619 0.00 0.00 42.06 2.44
3269 4093 2.946990 GGACCTCGACTGGAAACAAAAA 59.053 45.455 0.00 0.00 42.06 1.94
3270 4094 3.242969 GGACCTCGACTGGAAACAAAAAC 60.243 47.826 0.00 0.00 42.06 2.43
3271 4095 3.617284 ACCTCGACTGGAAACAAAAACT 58.383 40.909 0.00 0.00 42.06 2.66
3272 4096 3.377172 ACCTCGACTGGAAACAAAAACTG 59.623 43.478 0.00 0.00 42.06 3.16
3273 4097 3.243068 CCTCGACTGGAAACAAAAACTGG 60.243 47.826 0.00 0.00 42.06 4.00
3274 4098 2.685897 TCGACTGGAAACAAAAACTGGG 59.314 45.455 0.00 0.00 42.06 4.45
3275 4099 2.425668 CGACTGGAAACAAAAACTGGGT 59.574 45.455 0.00 0.00 42.06 4.51
3276 4100 3.488553 CGACTGGAAACAAAAACTGGGTC 60.489 47.826 0.00 0.00 42.06 4.46
3277 4101 3.436243 ACTGGAAACAAAAACTGGGTCA 58.564 40.909 0.00 0.00 42.06 4.02
3278 4102 3.447229 ACTGGAAACAAAAACTGGGTCAG 59.553 43.478 0.00 0.00 42.06 3.51
3279 4103 3.436243 TGGAAACAAAAACTGGGTCAGT 58.564 40.909 0.00 0.00 42.00 3.41
3280 4104 3.445805 TGGAAACAAAAACTGGGTCAGTC 59.554 43.478 0.75 0.00 40.11 3.51
3281 4105 3.488553 GGAAACAAAAACTGGGTCAGTCG 60.489 47.826 0.75 0.00 44.62 4.18
3282 4106 2.702592 ACAAAAACTGGGTCAGTCGA 57.297 45.000 0.75 0.00 44.62 4.20
3283 4107 3.208747 ACAAAAACTGGGTCAGTCGAT 57.791 42.857 0.75 0.00 44.62 3.59
3284 4108 3.551846 ACAAAAACTGGGTCAGTCGATT 58.448 40.909 0.75 0.00 44.62 3.34
3285 4109 3.951680 ACAAAAACTGGGTCAGTCGATTT 59.048 39.130 0.75 1.94 44.62 2.17
3286 4110 4.401202 ACAAAAACTGGGTCAGTCGATTTT 59.599 37.500 0.75 2.83 44.62 1.82
3287 4111 5.591067 ACAAAAACTGGGTCAGTCGATTTTA 59.409 36.000 0.75 0.00 44.62 1.52
3288 4112 5.941948 AAAACTGGGTCAGTCGATTTTAG 57.058 39.130 0.75 0.00 44.62 1.85
3289 4113 4.884668 AACTGGGTCAGTCGATTTTAGA 57.115 40.909 0.75 0.00 44.62 2.10
3290 4114 4.189639 ACTGGGTCAGTCGATTTTAGAC 57.810 45.455 0.00 0.00 41.21 2.59
3291 4115 3.056035 ACTGGGTCAGTCGATTTTAGACC 60.056 47.826 13.10 13.10 41.21 3.85
3292 4116 3.170717 TGGGTCAGTCGATTTTAGACCT 58.829 45.455 17.91 0.00 46.13 3.85
3293 4117 3.056107 TGGGTCAGTCGATTTTAGACCTG 60.056 47.826 17.91 6.81 46.13 4.00
3294 4118 2.930682 GGTCAGTCGATTTTAGACCTGC 59.069 50.000 13.81 1.52 44.10 4.85
3295 4119 2.930682 GTCAGTCGATTTTAGACCTGCC 59.069 50.000 0.00 0.00 39.31 4.85
3296 4120 2.093658 TCAGTCGATTTTAGACCTGCCC 60.094 50.000 0.00 0.00 39.31 5.36
3297 4121 2.093447 CAGTCGATTTTAGACCTGCCCT 60.093 50.000 0.00 0.00 39.31 5.19
3298 4122 2.572104 AGTCGATTTTAGACCTGCCCTT 59.428 45.455 0.00 0.00 39.31 3.95
3299 4123 3.009143 AGTCGATTTTAGACCTGCCCTTT 59.991 43.478 0.00 0.00 39.31 3.11
3300 4124 4.224370 AGTCGATTTTAGACCTGCCCTTTA 59.776 41.667 0.00 0.00 39.31 1.85
3301 4125 5.104485 AGTCGATTTTAGACCTGCCCTTTAT 60.104 40.000 0.00 0.00 39.31 1.40
3302 4126 5.589050 GTCGATTTTAGACCTGCCCTTTATT 59.411 40.000 0.00 0.00 32.78 1.40
3303 4127 6.095021 GTCGATTTTAGACCTGCCCTTTATTT 59.905 38.462 0.00 0.00 32.78 1.40
3304 4128 6.317893 TCGATTTTAGACCTGCCCTTTATTTC 59.682 38.462 0.00 0.00 0.00 2.17
3305 4129 6.094881 CGATTTTAGACCTGCCCTTTATTTCA 59.905 38.462 0.00 0.00 0.00 2.69
3306 4130 6.834168 TTTTAGACCTGCCCTTTATTTCAG 57.166 37.500 0.00 0.00 0.00 3.02
3307 4131 5.772393 TTAGACCTGCCCTTTATTTCAGA 57.228 39.130 0.00 0.00 0.00 3.27
3308 4132 4.870021 AGACCTGCCCTTTATTTCAGAT 57.130 40.909 0.00 0.00 0.00 2.90
3309 4133 4.786425 AGACCTGCCCTTTATTTCAGATC 58.214 43.478 0.00 0.00 0.00 2.75
3310 4134 4.228210 AGACCTGCCCTTTATTTCAGATCA 59.772 41.667 0.00 0.00 0.00 2.92
3311 4135 4.934356 ACCTGCCCTTTATTTCAGATCAA 58.066 39.130 0.00 0.00 0.00 2.57
3312 4136 5.332743 ACCTGCCCTTTATTTCAGATCAAA 58.667 37.500 0.00 0.00 0.00 2.69
3313 4137 5.185828 ACCTGCCCTTTATTTCAGATCAAAC 59.814 40.000 0.00 0.00 0.00 2.93
3314 4138 5.309323 TGCCCTTTATTTCAGATCAAACG 57.691 39.130 0.00 0.00 0.00 3.60
3315 4139 5.007034 TGCCCTTTATTTCAGATCAAACGA 58.993 37.500 0.00 0.00 0.00 3.85
3316 4140 5.106317 TGCCCTTTATTTCAGATCAAACGAC 60.106 40.000 0.00 0.00 0.00 4.34
3317 4141 5.106317 GCCCTTTATTTCAGATCAAACGACA 60.106 40.000 0.00 0.00 0.00 4.35
3318 4142 6.569610 GCCCTTTATTTCAGATCAAACGACAA 60.570 38.462 0.00 0.00 0.00 3.18
3319 4143 7.367285 CCCTTTATTTCAGATCAAACGACAAA 58.633 34.615 0.00 0.00 0.00 2.83
3320 4144 7.865385 CCCTTTATTTCAGATCAAACGACAAAA 59.135 33.333 0.00 0.00 0.00 2.44
3321 4145 8.905702 CCTTTATTTCAGATCAAACGACAAAAG 58.094 33.333 0.00 0.00 0.00 2.27
3322 4146 7.851822 TTATTTCAGATCAAACGACAAAAGC 57.148 32.000 0.00 0.00 0.00 3.51
3323 4147 4.891627 TTCAGATCAAACGACAAAAGCA 57.108 36.364 0.00 0.00 0.00 3.91
3324 4148 4.891627 TCAGATCAAACGACAAAAGCAA 57.108 36.364 0.00 0.00 0.00 3.91
3325 4149 5.242069 TCAGATCAAACGACAAAAGCAAA 57.758 34.783 0.00 0.00 0.00 3.68
3326 4150 5.645624 TCAGATCAAACGACAAAAGCAAAA 58.354 33.333 0.00 0.00 0.00 2.44
3327 4151 5.514914 TCAGATCAAACGACAAAAGCAAAAC 59.485 36.000 0.00 0.00 0.00 2.43
3328 4152 4.803613 AGATCAAACGACAAAAGCAAAACC 59.196 37.500 0.00 0.00 0.00 3.27
3329 4153 3.914312 TCAAACGACAAAAGCAAAACCA 58.086 36.364 0.00 0.00 0.00 3.67
3330 4154 3.675698 TCAAACGACAAAAGCAAAACCAC 59.324 39.130 0.00 0.00 0.00 4.16
3331 4155 3.305398 AACGACAAAAGCAAAACCACA 57.695 38.095 0.00 0.00 0.00 4.17
3332 4156 2.874849 ACGACAAAAGCAAAACCACAG 58.125 42.857 0.00 0.00 0.00 3.66
3333 4157 2.230266 ACGACAAAAGCAAAACCACAGT 59.770 40.909 0.00 0.00 0.00 3.55
3334 4158 2.598192 CGACAAAAGCAAAACCACAGTG 59.402 45.455 0.00 0.00 0.00 3.66
3335 4159 3.584834 GACAAAAGCAAAACCACAGTGT 58.415 40.909 0.00 0.00 0.00 3.55
3336 4160 3.993736 GACAAAAGCAAAACCACAGTGTT 59.006 39.130 0.00 0.00 0.00 3.32
3337 4161 5.140747 ACAAAAGCAAAACCACAGTGTTA 57.859 34.783 0.00 0.00 0.00 2.41
3338 4162 5.542779 ACAAAAGCAAAACCACAGTGTTAA 58.457 33.333 0.00 0.00 0.00 2.01
3339 4163 5.407084 ACAAAAGCAAAACCACAGTGTTAAC 59.593 36.000 0.00 0.00 0.00 2.01
3340 4164 4.792521 AAGCAAAACCACAGTGTTAACA 57.207 36.364 3.59 3.59 0.00 2.41
3341 4165 4.370364 AGCAAAACCACAGTGTTAACAG 57.630 40.909 8.98 0.45 0.00 3.16
3342 4166 4.013728 AGCAAAACCACAGTGTTAACAGA 58.986 39.130 8.98 0.00 0.00 3.41
3343 4167 4.461081 AGCAAAACCACAGTGTTAACAGAA 59.539 37.500 8.98 0.00 0.00 3.02
3344 4168 5.127031 AGCAAAACCACAGTGTTAACAGAAT 59.873 36.000 8.98 0.00 0.00 2.40
3345 4169 5.810074 GCAAAACCACAGTGTTAACAGAATT 59.190 36.000 8.98 0.00 0.00 2.17
3346 4170 6.237808 GCAAAACCACAGTGTTAACAGAATTG 60.238 38.462 8.98 7.99 0.00 2.32
3347 4171 6.767524 AAACCACAGTGTTAACAGAATTGA 57.232 33.333 8.98 0.00 0.00 2.57
3348 4172 5.751243 ACCACAGTGTTAACAGAATTGAC 57.249 39.130 8.98 0.00 0.00 3.18
3349 4173 5.437060 ACCACAGTGTTAACAGAATTGACT 58.563 37.500 8.98 0.00 0.00 3.41
3350 4174 5.296780 ACCACAGTGTTAACAGAATTGACTG 59.703 40.000 8.98 12.79 42.78 3.51
3351 4175 5.527214 CCACAGTGTTAACAGAATTGACTGA 59.473 40.000 20.61 0.00 40.63 3.41
3352 4176 6.422223 CACAGTGTTAACAGAATTGACTGAC 58.578 40.000 20.61 2.67 40.63 3.51
3353 4177 5.527582 ACAGTGTTAACAGAATTGACTGACC 59.472 40.000 20.61 2.50 40.63 4.02
3354 4178 5.049405 CAGTGTTAACAGAATTGACTGACCC 60.049 44.000 8.98 0.00 40.63 4.46
3355 4179 4.819630 GTGTTAACAGAATTGACTGACCCA 59.180 41.667 8.98 0.00 40.63 4.51
3356 4180 5.298276 GTGTTAACAGAATTGACTGACCCAA 59.702 40.000 8.98 0.00 40.63 4.12
3357 4181 5.888724 TGTTAACAGAATTGACTGACCCAAA 59.111 36.000 3.59 0.00 40.63 3.28
3358 4182 6.549364 TGTTAACAGAATTGACTGACCCAAAT 59.451 34.615 3.59 0.00 40.63 2.32
3359 4183 7.069331 TGTTAACAGAATTGACTGACCCAAATT 59.931 33.333 3.59 0.00 40.63 1.82
3360 4184 5.712152 ACAGAATTGACTGACCCAAATTC 57.288 39.130 0.00 0.00 40.63 2.17
3361 4185 5.388654 ACAGAATTGACTGACCCAAATTCT 58.611 37.500 0.00 4.15 40.63 2.40
3362 4186 5.242393 ACAGAATTGACTGACCCAAATTCTG 59.758 40.000 24.67 24.67 40.28 3.02
3363 4187 4.768968 AGAATTGACTGACCCAAATTCTGG 59.231 41.667 8.31 0.00 45.97 3.86
3372 4196 2.472695 CCAAATTCTGGGTCAGTCGA 57.527 50.000 0.00 0.00 42.17 4.20
3373 4197 2.991250 CCAAATTCTGGGTCAGTCGAT 58.009 47.619 0.00 0.00 42.17 3.59
3374 4198 3.347216 CCAAATTCTGGGTCAGTCGATT 58.653 45.455 0.00 0.00 42.17 3.34
3375 4199 4.513442 CCAAATTCTGGGTCAGTCGATTA 58.487 43.478 0.00 0.00 42.17 1.75
3376 4200 5.126067 CCAAATTCTGGGTCAGTCGATTAT 58.874 41.667 0.00 0.00 42.17 1.28
3377 4201 5.008019 CCAAATTCTGGGTCAGTCGATTATG 59.992 44.000 0.00 0.00 42.17 1.90
3378 4202 5.614324 AATTCTGGGTCAGTCGATTATGA 57.386 39.130 0.00 0.00 32.61 2.15
3379 4203 5.815233 ATTCTGGGTCAGTCGATTATGAT 57.185 39.130 0.00 0.00 32.61 2.45
3380 4204 4.855715 TCTGGGTCAGTCGATTATGATC 57.144 45.455 0.00 0.00 32.61 2.92
3381 4205 4.474394 TCTGGGTCAGTCGATTATGATCT 58.526 43.478 7.99 0.00 32.61 2.75
3382 4206 4.895889 TCTGGGTCAGTCGATTATGATCTT 59.104 41.667 7.99 0.00 32.61 2.40
3383 4207 6.068670 TCTGGGTCAGTCGATTATGATCTTA 58.931 40.000 7.99 0.00 32.61 2.10
3384 4208 6.721668 TCTGGGTCAGTCGATTATGATCTTAT 59.278 38.462 7.99 0.00 32.61 1.73
3385 4209 6.691508 TGGGTCAGTCGATTATGATCTTATG 58.308 40.000 7.99 0.00 0.00 1.90
3386 4210 6.102663 GGGTCAGTCGATTATGATCTTATGG 58.897 44.000 7.99 0.00 0.00 2.74
3387 4211 5.578727 GGTCAGTCGATTATGATCTTATGGC 59.421 44.000 0.00 0.00 0.00 4.40
3388 4212 5.578727 GTCAGTCGATTATGATCTTATGGCC 59.421 44.000 0.00 0.00 0.00 5.36
3389 4213 4.872691 CAGTCGATTATGATCTTATGGCCC 59.127 45.833 0.00 0.00 0.00 5.80
3390 4214 4.532126 AGTCGATTATGATCTTATGGCCCA 59.468 41.667 0.00 0.00 0.00 5.36
3391 4215 4.872691 GTCGATTATGATCTTATGGCCCAG 59.127 45.833 0.00 0.00 0.00 4.45
3392 4216 3.624861 CGATTATGATCTTATGGCCCAGC 59.375 47.826 0.00 0.00 0.00 4.85
3448 4272 2.110352 GCGGACCCGTTAACCCATG 61.110 63.158 10.37 0.00 42.09 3.66
3452 4276 1.271488 GGACCCGTTAACCCATGACAA 60.271 52.381 0.00 0.00 0.00 3.18
3453 4277 2.081462 GACCCGTTAACCCATGACAAG 58.919 52.381 0.00 0.00 0.00 3.16
3459 4283 4.979815 CCGTTAACCCATGACAAGAAAAAC 59.020 41.667 0.00 0.00 0.00 2.43
3460 4284 4.979815 CGTTAACCCATGACAAGAAAAACC 59.020 41.667 0.00 0.00 0.00 3.27
3476 4300 1.276622 AACCCCAGCTACACTCGAAT 58.723 50.000 0.00 0.00 0.00 3.34
3491 4315 5.111989 CACTCGAATACATCTGGTCACATT 58.888 41.667 0.00 0.00 0.00 2.71
3493 4317 3.871006 TCGAATACATCTGGTCACATTGC 59.129 43.478 0.00 0.00 0.00 3.56
3498 4322 1.135489 CATCTGGTCACATTGCTGCAC 60.135 52.381 0.00 0.00 0.00 4.57
3505 4329 0.454600 CACATTGCTGCACAGATCCC 59.545 55.000 0.00 0.00 0.00 3.85
3528 4352 1.357761 TGGACCATTCCTTTCCTTCCC 59.642 52.381 0.00 0.00 43.31 3.97
3554 4378 2.021457 GTCTCCTTTCTCCTCTCCTCG 58.979 57.143 0.00 0.00 0.00 4.63
3562 4386 1.743321 CTCCTCTCCTCGGGTGATGC 61.743 65.000 0.00 0.00 0.00 3.91
3576 4400 4.567488 ATGCCGCCGCCATCATGA 62.567 61.111 0.00 0.00 0.00 3.07
3616 4440 0.901124 CCAGAAGGACACAGAGGAGG 59.099 60.000 0.00 0.00 36.89 4.30
3641 4465 4.267349 TCCCAAAGGACGACTAAAAGAG 57.733 45.455 0.00 0.00 37.19 2.85
3642 4466 3.899360 TCCCAAAGGACGACTAAAAGAGA 59.101 43.478 0.00 0.00 37.19 3.10
3643 4467 4.345837 TCCCAAAGGACGACTAAAAGAGAA 59.654 41.667 0.00 0.00 37.19 2.87
3644 4468 4.691216 CCCAAAGGACGACTAAAAGAGAAG 59.309 45.833 0.00 0.00 33.47 2.85
3645 4469 5.510861 CCCAAAGGACGACTAAAAGAGAAGA 60.511 44.000 0.00 0.00 33.47 2.87
3646 4470 5.989777 CCAAAGGACGACTAAAAGAGAAGAA 59.010 40.000 0.00 0.00 0.00 2.52
3679 4503 6.966534 AGAACAATCCACAAAGTTTCTCAT 57.033 33.333 0.00 0.00 0.00 2.90
3687 4511 4.695455 CCACAAAGTTTCTCATCACGGTAT 59.305 41.667 0.00 0.00 0.00 2.73
3719 4543 1.764723 CACCTCCAGATGCCTACATGA 59.235 52.381 0.00 0.00 36.35 3.07
3727 4551 4.506095 CCAGATGCCTACATGATTCATCCA 60.506 45.833 0.00 0.00 36.35 3.41
3728 4552 5.067954 CAGATGCCTACATGATTCATCCAA 58.932 41.667 0.00 0.00 36.35 3.53
3729 4553 5.533528 CAGATGCCTACATGATTCATCCAAA 59.466 40.000 0.00 0.00 36.35 3.28
3804 4630 3.181469 TGACTTAGGAAACACGCAGAGTT 60.181 43.478 0.00 0.00 44.53 3.01
3809 4635 1.798813 GGAAACACGCAGAGTTGGTAG 59.201 52.381 0.00 0.00 41.16 3.18
3829 4655 6.759827 TGGTAGTTAAACTCGAAATCCATAGC 59.240 38.462 0.00 0.00 0.00 2.97
3831 4657 4.809426 AGTTAAACTCGAAATCCATAGCCG 59.191 41.667 0.00 0.00 0.00 5.52
3869 4695 4.489306 AGCTTAGGGACAGAACATTACC 57.511 45.455 0.00 0.00 0.00 2.85
3871 4697 4.288626 AGCTTAGGGACAGAACATTACCAA 59.711 41.667 0.00 0.00 0.00 3.67
3906 4732 2.800250 CCCTGCAGAACTGAAATTCCT 58.200 47.619 17.39 0.00 0.00 3.36
3908 4734 3.415212 CCTGCAGAACTGAAATTCCTCA 58.585 45.455 17.39 0.00 0.00 3.86
3909 4735 3.822735 CCTGCAGAACTGAAATTCCTCAA 59.177 43.478 17.39 0.00 0.00 3.02
3933 4759 6.155827 ACATCACATTTGGAAACCATTAACG 58.844 36.000 0.00 0.00 31.53 3.18
3961 4787 6.932947 TCAAATCCATTTACATGCATGACAA 58.067 32.000 32.75 22.55 0.00 3.18
4033 4859 3.229697 AGGCACCTGCTAGAAAAACTT 57.770 42.857 0.00 0.00 41.70 2.66
4161 4990 8.879342 TTTTACAACATTTCAACATTACCTGG 57.121 30.769 0.00 0.00 0.00 4.45
4173 5002 5.894298 ACATTACCTGGAGATATGCAGAA 57.106 39.130 10.78 0.00 0.00 3.02
4174 5003 6.252599 ACATTACCTGGAGATATGCAGAAA 57.747 37.500 10.78 4.89 0.00 2.52
4175 5004 6.058183 ACATTACCTGGAGATATGCAGAAAC 58.942 40.000 10.78 0.00 0.00 2.78
4176 5005 3.567478 ACCTGGAGATATGCAGAAACC 57.433 47.619 10.78 0.00 0.00 3.27
4177 5006 3.118531 ACCTGGAGATATGCAGAAACCT 58.881 45.455 10.78 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.250040 CCAGCGTATACAGGTTTAATGGC 59.750 47.826 3.32 0.00 0.00 4.40
44 47 2.320587 GCTCTGACCGTGCACCAAG 61.321 63.158 12.15 2.71 32.54 3.61
176 185 6.293735 GGATTCAACGGTGATGTTCACTTTTA 60.294 38.462 2.76 0.00 46.19 1.52
198 207 1.584724 ACTTTGGACGATGGGAGGAT 58.415 50.000 0.00 0.00 0.00 3.24
219 228 0.257328 TGGACAACACTTTCCAGCCA 59.743 50.000 0.00 0.00 36.96 4.75
229 238 7.599630 TTACGGAATTACTTATGGACAACAC 57.400 36.000 0.00 0.00 0.00 3.32
242 251 8.021396 AGCACAAGAAAGAAATTACGGAATTAC 58.979 33.333 5.92 0.00 34.01 1.89
243 252 8.106247 AGCACAAGAAAGAAATTACGGAATTA 57.894 30.769 5.92 0.00 34.01 1.40
244 253 6.981722 AGCACAAGAAAGAAATTACGGAATT 58.018 32.000 0.00 0.00 36.82 2.17
245 254 6.575162 AGCACAAGAAAGAAATTACGGAAT 57.425 33.333 0.00 0.00 0.00 3.01
246 255 7.681939 ATAGCACAAGAAAGAAATTACGGAA 57.318 32.000 0.00 0.00 0.00 4.30
247 256 8.958119 ATATAGCACAAGAAAGAAATTACGGA 57.042 30.769 0.00 0.00 0.00 4.69
248 257 8.826710 TGATATAGCACAAGAAAGAAATTACGG 58.173 33.333 0.00 0.00 0.00 4.02
323 345 6.919775 ATCTTAGTGGACTAGTCAGTTGTT 57.080 37.500 23.91 6.09 34.21 2.83
335 357 6.248569 TGGATCCCTAAAATCTTAGTGGAC 57.751 41.667 9.90 0.00 37.33 4.02
352 377 4.830046 TGAGCTAGTCTCTATGTTGGATCC 59.170 45.833 4.20 4.20 42.38 3.36
355 380 3.634448 GCTGAGCTAGTCTCTATGTTGGA 59.366 47.826 13.14 0.00 42.38 3.53
360 385 4.661993 CGTAGCTGAGCTAGTCTCTATG 57.338 50.000 15.54 0.00 42.11 2.23
389 414 2.595754 GGCCGGCCCAAGATCATC 60.596 66.667 36.64 5.01 0.00 2.92
410 435 0.656259 GTCGCCGCCCTAAGATTTTC 59.344 55.000 0.00 0.00 0.00 2.29
439 464 2.222027 GTGTTTAGACTGCCAGCAACT 58.778 47.619 0.00 0.00 0.00 3.16
443 468 3.923017 AAATGTGTTTAGACTGCCAGC 57.077 42.857 0.00 0.00 0.00 4.85
495 535 4.451150 TTGGACGCAGCCGCCTAG 62.451 66.667 0.30 0.00 38.22 3.02
496 536 4.451150 CTTGGACGCAGCCGCCTA 62.451 66.667 0.30 0.00 38.22 3.93
512 552 3.320541 CCATCGCTAGACTCATTCTTCCT 59.679 47.826 0.00 0.00 35.55 3.36
524 564 3.550431 GGGCTGCCCATCGCTAGA 61.550 66.667 32.46 0.00 44.65 2.43
567 614 2.343163 CTGCCCTTCGCTAGGTCTCG 62.343 65.000 0.00 0.00 43.07 4.04
623 713 4.037222 TCAAGCCCCATATCAGAACTGTA 58.963 43.478 1.73 0.00 0.00 2.74
733 823 6.016527 GGTCATTACCGATCCCTAATTTTTCC 60.017 42.308 0.00 0.00 35.62 3.13
815 905 5.243207 ACCTCCGTACTAAAAATGTTGAGG 58.757 41.667 0.00 0.00 0.00 3.86
830 1102 9.944376 AAATACGACTACTATATTACCTCCGTA 57.056 33.333 0.00 0.00 34.14 4.02
976 1658 0.178992 TGGTGTTTGCCAAGGAGGAG 60.179 55.000 0.00 0.00 41.22 3.69
1011 1701 0.322648 TAGTGAGACTGGGACGACGA 59.677 55.000 0.00 0.00 0.00 4.20
1029 1719 1.361543 AGGAGCACCAGGACTAAGGTA 59.638 52.381 2.07 0.00 36.07 3.08
1083 1779 5.105957 CGAGAAGTTGAGATTGAAGGAGAGA 60.106 44.000 0.00 0.00 0.00 3.10
1095 1791 2.667348 GGGGTCCGAGAAGTTGAGA 58.333 57.895 0.00 0.00 0.00 3.27
1777 2512 6.934056 AGCTGAATGACCATGATAGTATCTC 58.066 40.000 11.40 1.52 0.00 2.75
1785 2520 2.508716 AGTGGAGCTGAATGACCATGAT 59.491 45.455 0.00 0.00 34.87 2.45
1817 2552 5.760128 CCTTGTTGGATTCCAATCGGGATC 61.760 50.000 20.67 7.14 45.80 3.36
1866 2601 1.458639 GCTTGCTGCTGGTTGGAGTT 61.459 55.000 0.00 0.00 38.95 3.01
1867 2602 1.900498 GCTTGCTGCTGGTTGGAGT 60.900 57.895 0.00 0.00 38.95 3.85
1880 2639 1.598601 CCACCAACATTTTGTGCTTGC 59.401 47.619 0.00 0.00 0.00 4.01
1899 2658 1.101331 CTACGGACAGTAGGGTCACC 58.899 60.000 4.97 0.00 46.93 4.02
1918 2677 1.398390 CAGAAATAGCAGCGGAACCAC 59.602 52.381 0.00 0.00 0.00 4.16
1920 2679 0.378610 GCAGAAATAGCAGCGGAACC 59.621 55.000 0.00 0.00 0.00 3.62
1957 2716 0.315886 TGTCGCCGCCATATCGTTAT 59.684 50.000 0.00 0.00 0.00 1.89
1978 2740 8.638685 TTTGCTCTTTTTGATCTTCTTTTCTG 57.361 30.769 0.00 0.00 0.00 3.02
2007 2769 2.356382 GTCGCTATCACTACTGCTGTCT 59.644 50.000 0.00 0.00 0.00 3.41
2169 2946 0.321830 GGTGGCCTTGGTAAACGCTA 60.322 55.000 3.32 0.00 0.00 4.26
2180 2957 4.379243 CGAGCGTGAGGTGGCCTT 62.379 66.667 3.32 0.00 45.11 4.35
2400 3205 2.098280 GCTGTAGAGATGCTTGTCGAGA 59.902 50.000 0.00 0.00 0.00 4.04
2438 3246 2.827755 TCTTGTACCTCTGTGGCCATA 58.172 47.619 9.72 4.92 40.22 2.74
2870 3678 2.509336 CCATCCACCACTCGTCGC 60.509 66.667 0.00 0.00 0.00 5.19
2952 3760 3.461085 ACTGAAGGATATTCATGGCCTGT 59.539 43.478 3.32 0.00 0.00 4.00
3030 3838 2.579201 CGGCCGGATGACTCAAGT 59.421 61.111 20.10 0.00 0.00 3.16
3049 3857 2.430367 GGTGGAGAACGCCCTGTT 59.570 61.111 0.00 0.00 44.24 3.16
3086 3906 2.169769 ACGGTGTTGACCAAAGAAGAGA 59.830 45.455 0.00 0.00 43.33 3.10
3107 3927 0.038526 GGAAGAAAGAGTGGCGTCGA 60.039 55.000 0.00 0.00 0.00 4.20
3200 4024 1.156736 AACTGTAGCGGTCAATGCAC 58.843 50.000 0.00 0.00 33.85 4.57
3201 4025 2.753055 TAACTGTAGCGGTCAATGCA 57.247 45.000 0.00 0.00 33.85 3.96
3202 4026 4.616181 AAATAACTGTAGCGGTCAATGC 57.384 40.909 0.00 0.00 0.00 3.56
3203 4027 6.176975 TCAAAATAACTGTAGCGGTCAATG 57.823 37.500 0.00 0.00 0.00 2.82
3205 4029 5.180492 CCTTCAAAATAACTGTAGCGGTCAA 59.820 40.000 0.00 0.00 0.00 3.18
3206 4030 4.693566 CCTTCAAAATAACTGTAGCGGTCA 59.306 41.667 0.00 0.00 0.00 4.02
3207 4031 4.933400 TCCTTCAAAATAACTGTAGCGGTC 59.067 41.667 0.00 0.00 0.00 4.79
3208 4032 4.901868 TCCTTCAAAATAACTGTAGCGGT 58.098 39.130 0.00 0.00 0.00 5.68
3209 4033 6.258160 CAATCCTTCAAAATAACTGTAGCGG 58.742 40.000 0.00 0.00 0.00 5.52
3213 4037 5.124776 CGCCCAATCCTTCAAAATAACTGTA 59.875 40.000 0.00 0.00 0.00 2.74
3242 4066 0.898789 TCCAGTCGAGGTCCCTCAAC 60.899 60.000 13.54 5.24 42.86 3.18
3247 4071 0.395312 TTGTTTCCAGTCGAGGTCCC 59.605 55.000 0.00 0.00 0.00 4.46
3248 4072 2.249844 TTTGTTTCCAGTCGAGGTCC 57.750 50.000 0.00 0.00 0.00 4.46
3249 4073 3.626217 AGTTTTTGTTTCCAGTCGAGGTC 59.374 43.478 0.00 0.00 0.00 3.85
3250 4074 3.377172 CAGTTTTTGTTTCCAGTCGAGGT 59.623 43.478 0.00 0.00 0.00 3.85
3251 4075 3.243068 CCAGTTTTTGTTTCCAGTCGAGG 60.243 47.826 0.00 0.00 0.00 4.63
3252 4076 3.243068 CCCAGTTTTTGTTTCCAGTCGAG 60.243 47.826 0.00 0.00 0.00 4.04
3253 4077 2.685897 CCCAGTTTTTGTTTCCAGTCGA 59.314 45.455 0.00 0.00 0.00 4.20
3254 4078 2.425668 ACCCAGTTTTTGTTTCCAGTCG 59.574 45.455 0.00 0.00 0.00 4.18
3255 4079 3.445805 TGACCCAGTTTTTGTTTCCAGTC 59.554 43.478 0.00 0.00 0.00 3.51
3256 4080 3.436243 TGACCCAGTTTTTGTTTCCAGT 58.564 40.909 0.00 0.00 0.00 4.00
3257 4081 3.447229 ACTGACCCAGTTTTTGTTTCCAG 59.553 43.478 0.00 0.00 42.59 3.86
3258 4082 3.436243 ACTGACCCAGTTTTTGTTTCCA 58.564 40.909 0.00 0.00 42.59 3.53
3259 4083 3.488553 CGACTGACCCAGTTTTTGTTTCC 60.489 47.826 0.82 0.00 45.44 3.13
3260 4084 3.375922 TCGACTGACCCAGTTTTTGTTTC 59.624 43.478 0.82 0.00 45.44 2.78
3261 4085 3.349022 TCGACTGACCCAGTTTTTGTTT 58.651 40.909 0.82 0.00 45.44 2.83
3262 4086 2.993937 TCGACTGACCCAGTTTTTGTT 58.006 42.857 0.82 0.00 45.44 2.83
3263 4087 2.702592 TCGACTGACCCAGTTTTTGT 57.297 45.000 0.82 0.00 45.44 2.83
3264 4088 4.568152 AAATCGACTGACCCAGTTTTTG 57.432 40.909 0.82 0.00 45.44 2.44
3265 4089 6.017357 GTCTAAAATCGACTGACCCAGTTTTT 60.017 38.462 0.82 7.02 45.44 1.94
3266 4090 5.469084 GTCTAAAATCGACTGACCCAGTTTT 59.531 40.000 0.82 1.36 45.44 2.43
3267 4091 4.995487 GTCTAAAATCGACTGACCCAGTTT 59.005 41.667 0.82 0.00 45.44 2.66
3268 4092 4.562963 GGTCTAAAATCGACTGACCCAGTT 60.563 45.833 10.93 0.00 45.44 3.16
3270 4094 3.195825 AGGTCTAAAATCGACTGACCCAG 59.804 47.826 15.69 0.00 45.90 4.45
3271 4095 3.056107 CAGGTCTAAAATCGACTGACCCA 60.056 47.826 15.69 0.00 45.90 4.51
3272 4096 3.522553 CAGGTCTAAAATCGACTGACCC 58.477 50.000 15.69 0.54 45.90 4.46
3273 4097 2.930682 GCAGGTCTAAAATCGACTGACC 59.069 50.000 13.02 13.02 45.31 4.02
3274 4098 2.930682 GGCAGGTCTAAAATCGACTGAC 59.069 50.000 0.00 0.00 0.00 3.51
3275 4099 2.093658 GGGCAGGTCTAAAATCGACTGA 60.094 50.000 0.00 0.00 0.00 3.41
3276 4100 2.093447 AGGGCAGGTCTAAAATCGACTG 60.093 50.000 0.00 0.00 0.00 3.51
3277 4101 2.188817 AGGGCAGGTCTAAAATCGACT 58.811 47.619 0.00 0.00 0.00 4.18
3278 4102 2.693267 AGGGCAGGTCTAAAATCGAC 57.307 50.000 0.00 0.00 0.00 4.20
3279 4103 3.713826 AAAGGGCAGGTCTAAAATCGA 57.286 42.857 0.00 0.00 0.00 3.59
3280 4104 6.094881 TGAAATAAAGGGCAGGTCTAAAATCG 59.905 38.462 0.00 0.00 0.00 3.34
3281 4105 7.339466 TCTGAAATAAAGGGCAGGTCTAAAATC 59.661 37.037 0.00 0.00 0.00 2.17
3282 4106 7.182060 TCTGAAATAAAGGGCAGGTCTAAAAT 58.818 34.615 0.00 0.00 0.00 1.82
3283 4107 6.548321 TCTGAAATAAAGGGCAGGTCTAAAA 58.452 36.000 0.00 0.00 0.00 1.52
3284 4108 6.134535 TCTGAAATAAAGGGCAGGTCTAAA 57.865 37.500 0.00 0.00 0.00 1.85
3285 4109 5.772393 TCTGAAATAAAGGGCAGGTCTAA 57.228 39.130 0.00 0.00 0.00 2.10
3286 4110 5.428457 TGATCTGAAATAAAGGGCAGGTCTA 59.572 40.000 0.00 0.00 38.86 2.59
3287 4111 4.228210 TGATCTGAAATAAAGGGCAGGTCT 59.772 41.667 0.00 0.00 38.86 3.85
3288 4112 4.526970 TGATCTGAAATAAAGGGCAGGTC 58.473 43.478 0.00 0.00 38.62 3.85
3289 4113 4.591321 TGATCTGAAATAAAGGGCAGGT 57.409 40.909 0.00 0.00 0.00 4.00
3290 4114 5.654497 GTTTGATCTGAAATAAAGGGCAGG 58.346 41.667 0.00 0.00 0.00 4.85
3291 4115 5.123820 TCGTTTGATCTGAAATAAAGGGCAG 59.876 40.000 0.00 0.00 0.00 4.85
3292 4116 5.007034 TCGTTTGATCTGAAATAAAGGGCA 58.993 37.500 0.00 0.00 0.00 5.36
3293 4117 5.106317 TGTCGTTTGATCTGAAATAAAGGGC 60.106 40.000 0.00 0.00 0.00 5.19
3294 4118 6.494893 TGTCGTTTGATCTGAAATAAAGGG 57.505 37.500 0.00 0.00 0.00 3.95
3295 4119 8.795786 TTTTGTCGTTTGATCTGAAATAAAGG 57.204 30.769 0.00 0.00 0.00 3.11
3296 4120 8.420189 GCTTTTGTCGTTTGATCTGAAATAAAG 58.580 33.333 0.00 0.00 0.00 1.85
3297 4121 7.918033 TGCTTTTGTCGTTTGATCTGAAATAAA 59.082 29.630 0.00 0.00 0.00 1.40
3298 4122 7.421599 TGCTTTTGTCGTTTGATCTGAAATAA 58.578 30.769 0.00 0.00 0.00 1.40
3299 4123 6.964908 TGCTTTTGTCGTTTGATCTGAAATA 58.035 32.000 0.00 0.00 0.00 1.40
3300 4124 5.830912 TGCTTTTGTCGTTTGATCTGAAAT 58.169 33.333 0.00 0.00 0.00 2.17
3301 4125 5.242069 TGCTTTTGTCGTTTGATCTGAAA 57.758 34.783 0.00 0.00 0.00 2.69
3302 4126 4.891627 TGCTTTTGTCGTTTGATCTGAA 57.108 36.364 0.00 0.00 0.00 3.02
3303 4127 4.891627 TTGCTTTTGTCGTTTGATCTGA 57.108 36.364 0.00 0.00 0.00 3.27
3304 4128 5.276348 GGTTTTGCTTTTGTCGTTTGATCTG 60.276 40.000 0.00 0.00 0.00 2.90
3305 4129 4.803613 GGTTTTGCTTTTGTCGTTTGATCT 59.196 37.500 0.00 0.00 0.00 2.75
3306 4130 4.564769 TGGTTTTGCTTTTGTCGTTTGATC 59.435 37.500 0.00 0.00 0.00 2.92
3307 4131 4.328712 GTGGTTTTGCTTTTGTCGTTTGAT 59.671 37.500 0.00 0.00 0.00 2.57
3308 4132 3.675698 GTGGTTTTGCTTTTGTCGTTTGA 59.324 39.130 0.00 0.00 0.00 2.69
3309 4133 3.430218 TGTGGTTTTGCTTTTGTCGTTTG 59.570 39.130 0.00 0.00 0.00 2.93
3310 4134 3.654414 TGTGGTTTTGCTTTTGTCGTTT 58.346 36.364 0.00 0.00 0.00 3.60
3311 4135 3.249917 CTGTGGTTTTGCTTTTGTCGTT 58.750 40.909 0.00 0.00 0.00 3.85
3312 4136 2.230266 ACTGTGGTTTTGCTTTTGTCGT 59.770 40.909 0.00 0.00 0.00 4.34
3313 4137 2.598192 CACTGTGGTTTTGCTTTTGTCG 59.402 45.455 0.00 0.00 0.00 4.35
3314 4138 3.584834 ACACTGTGGTTTTGCTTTTGTC 58.415 40.909 13.09 0.00 0.00 3.18
3315 4139 3.676291 ACACTGTGGTTTTGCTTTTGT 57.324 38.095 13.09 0.00 0.00 2.83
3316 4140 5.406780 TGTTAACACTGTGGTTTTGCTTTTG 59.593 36.000 13.09 0.00 32.29 2.44
3317 4141 5.542779 TGTTAACACTGTGGTTTTGCTTTT 58.457 33.333 13.09 0.00 32.29 2.27
3318 4142 5.047660 TCTGTTAACACTGTGGTTTTGCTTT 60.048 36.000 13.09 0.00 32.29 3.51
3319 4143 4.461081 TCTGTTAACACTGTGGTTTTGCTT 59.539 37.500 13.09 0.00 32.29 3.91
3320 4144 4.013728 TCTGTTAACACTGTGGTTTTGCT 58.986 39.130 13.09 0.00 32.29 3.91
3321 4145 4.364415 TCTGTTAACACTGTGGTTTTGC 57.636 40.909 13.09 0.00 32.29 3.68
3322 4146 7.009174 GTCAATTCTGTTAACACTGTGGTTTTG 59.991 37.037 13.09 4.27 32.29 2.44
3323 4147 7.033185 GTCAATTCTGTTAACACTGTGGTTTT 58.967 34.615 13.09 0.03 32.29 2.43
3324 4148 6.377146 AGTCAATTCTGTTAACACTGTGGTTT 59.623 34.615 13.09 0.77 32.29 3.27
3325 4149 5.885912 AGTCAATTCTGTTAACACTGTGGTT 59.114 36.000 13.09 6.78 34.81 3.67
3326 4150 5.296780 CAGTCAATTCTGTTAACACTGTGGT 59.703 40.000 13.09 8.37 0.00 4.16
3327 4151 5.527214 TCAGTCAATTCTGTTAACACTGTGG 59.473 40.000 13.09 3.48 36.85 4.17
3328 4152 6.422223 GTCAGTCAATTCTGTTAACACTGTG 58.578 40.000 15.60 6.19 36.85 3.66
3329 4153 5.527582 GGTCAGTCAATTCTGTTAACACTGT 59.472 40.000 15.60 0.00 36.85 3.55
3330 4154 5.049405 GGGTCAGTCAATTCTGTTAACACTG 60.049 44.000 3.59 8.80 36.85 3.66
3331 4155 5.063880 GGGTCAGTCAATTCTGTTAACACT 58.936 41.667 3.59 0.00 36.85 3.55
3332 4156 4.819630 TGGGTCAGTCAATTCTGTTAACAC 59.180 41.667 3.59 0.00 36.85 3.32
3333 4157 5.042463 TGGGTCAGTCAATTCTGTTAACA 57.958 39.130 8.28 8.28 36.85 2.41
3334 4158 6.385649 TTTGGGTCAGTCAATTCTGTTAAC 57.614 37.500 0.00 0.00 36.85 2.01
3335 4159 7.505585 AGAATTTGGGTCAGTCAATTCTGTTAA 59.494 33.333 5.42 0.00 36.85 2.01
3336 4160 7.004086 AGAATTTGGGTCAGTCAATTCTGTTA 58.996 34.615 5.42 0.00 36.85 2.41
3337 4161 5.835280 AGAATTTGGGTCAGTCAATTCTGTT 59.165 36.000 5.42 0.00 36.85 3.16
3338 4162 5.242393 CAGAATTTGGGTCAGTCAATTCTGT 59.758 40.000 18.89 0.00 36.47 3.41
3339 4163 5.336213 CCAGAATTTGGGTCAGTCAATTCTG 60.336 44.000 19.71 19.71 43.75 3.02
3340 4164 4.768968 CCAGAATTTGGGTCAGTCAATTCT 59.231 41.667 0.00 0.00 43.75 2.40
3341 4165 5.064441 CCAGAATTTGGGTCAGTCAATTC 57.936 43.478 0.00 0.00 43.75 2.17
3354 4178 5.817296 TCATAATCGACTGACCCAGAATTTG 59.183 40.000 0.45 1.62 35.18 2.32
3355 4179 5.989477 TCATAATCGACTGACCCAGAATTT 58.011 37.500 0.45 0.00 35.18 1.82
3356 4180 5.614324 TCATAATCGACTGACCCAGAATT 57.386 39.130 0.45 1.42 35.18 2.17
3357 4181 5.541868 AGATCATAATCGACTGACCCAGAAT 59.458 40.000 0.45 0.00 36.97 2.40
3358 4182 4.895889 AGATCATAATCGACTGACCCAGAA 59.104 41.667 0.45 0.00 36.97 3.02
3359 4183 4.474394 AGATCATAATCGACTGACCCAGA 58.526 43.478 0.45 0.00 36.97 3.86
3360 4184 4.862902 AGATCATAATCGACTGACCCAG 57.137 45.455 0.00 0.00 36.97 4.45
3361 4185 6.295292 CCATAAGATCATAATCGACTGACCCA 60.295 42.308 0.00 0.00 36.97 4.51
3362 4186 6.102663 CCATAAGATCATAATCGACTGACCC 58.897 44.000 0.00 0.00 36.97 4.46
3363 4187 5.578727 GCCATAAGATCATAATCGACTGACC 59.421 44.000 0.00 0.00 36.97 4.02
3364 4188 5.578727 GGCCATAAGATCATAATCGACTGAC 59.421 44.000 0.00 0.00 36.97 3.51
3365 4189 5.337571 GGGCCATAAGATCATAATCGACTGA 60.338 44.000 4.39 0.00 36.97 3.41
3366 4190 4.872691 GGGCCATAAGATCATAATCGACTG 59.127 45.833 4.39 0.00 36.97 3.51
3367 4191 4.532126 TGGGCCATAAGATCATAATCGACT 59.468 41.667 0.00 0.00 36.97 4.18
3368 4192 4.832248 TGGGCCATAAGATCATAATCGAC 58.168 43.478 0.00 0.00 36.97 4.20
3369 4193 4.623886 GCTGGGCCATAAGATCATAATCGA 60.624 45.833 6.72 0.00 36.97 3.59
3370 4194 3.624861 GCTGGGCCATAAGATCATAATCG 59.375 47.826 6.72 0.00 36.97 3.34
3386 4210 1.069596 CAACAAAGTTGGGCTGGGC 59.930 57.895 2.05 0.00 0.00 5.36
3387 4211 1.118838 TTCAACAAAGTTGGGCTGGG 58.881 50.000 9.72 0.00 0.00 4.45
3388 4212 2.935849 GTTTTCAACAAAGTTGGGCTGG 59.064 45.455 9.72 0.00 0.00 4.85
3389 4213 3.370672 GTGTTTTCAACAAAGTTGGGCTG 59.629 43.478 9.72 0.00 44.16 4.85
3390 4214 3.007398 TGTGTTTTCAACAAAGTTGGGCT 59.993 39.130 9.72 0.00 44.16 5.19
3391 4215 3.124466 GTGTGTTTTCAACAAAGTTGGGC 59.876 43.478 9.72 0.26 44.16 5.36
3392 4216 4.310769 TGTGTGTTTTCAACAAAGTTGGG 58.689 39.130 9.72 0.00 44.16 4.12
3393 4217 5.914085 TTGTGTGTTTTCAACAAAGTTGG 57.086 34.783 9.72 0.00 44.16 3.77
3394 4218 6.305639 CCATTGTGTGTTTTCAACAAAGTTG 58.694 36.000 3.58 3.58 44.16 3.16
3395 4219 5.411053 CCCATTGTGTGTTTTCAACAAAGTT 59.589 36.000 0.00 0.00 44.16 2.66
3396 4220 4.934602 CCCATTGTGTGTTTTCAACAAAGT 59.065 37.500 0.00 0.00 44.16 2.66
3397 4221 4.201802 GCCCATTGTGTGTTTTCAACAAAG 60.202 41.667 0.00 0.00 44.16 2.77
3398 4222 3.686726 GCCCATTGTGTGTTTTCAACAAA 59.313 39.130 0.00 0.00 44.16 2.83
3399 4223 3.055530 AGCCCATTGTGTGTTTTCAACAA 60.056 39.130 0.00 0.00 44.16 2.83
3400 4224 2.499289 AGCCCATTGTGTGTTTTCAACA 59.501 40.909 0.00 0.00 39.52 3.33
3401 4225 2.865551 CAGCCCATTGTGTGTTTTCAAC 59.134 45.455 0.00 0.00 0.00 3.18
3448 4272 3.004419 GTGTAGCTGGGGTTTTTCTTGTC 59.996 47.826 0.00 0.00 0.00 3.18
3452 4276 2.550208 CGAGTGTAGCTGGGGTTTTTCT 60.550 50.000 0.00 0.00 0.00 2.52
3453 4277 1.804748 CGAGTGTAGCTGGGGTTTTTC 59.195 52.381 0.00 0.00 0.00 2.29
3459 4283 1.754803 TGTATTCGAGTGTAGCTGGGG 59.245 52.381 0.00 0.00 0.00 4.96
3460 4284 3.319405 AGATGTATTCGAGTGTAGCTGGG 59.681 47.826 0.00 0.00 0.00 4.45
3476 4300 2.290197 TGCAGCAATGTGACCAGATGTA 60.290 45.455 0.00 0.00 0.00 2.29
3491 4315 0.471191 CCATAGGGATCTGTGCAGCA 59.529 55.000 0.00 0.00 35.59 4.41
3528 4352 2.823154 AGAGGAGAAAGGAGACGTGAAG 59.177 50.000 0.00 0.00 0.00 3.02
3562 4386 2.640989 CATTCATGATGGCGGCGG 59.359 61.111 9.78 0.00 31.83 6.13
3571 4395 3.519107 TGACCTCTAGTTGCCATTCATGA 59.481 43.478 0.00 0.00 0.00 3.07
3576 4400 3.135530 GGATCTGACCTCTAGTTGCCATT 59.864 47.826 0.00 0.00 0.00 3.16
3583 4407 3.529734 TCCTTCTGGATCTGACCTCTAGT 59.470 47.826 0.00 0.00 37.46 2.57
3608 4432 2.578021 TCCTTTGGGATTTCCTCCTCTG 59.422 50.000 0.00 0.00 44.28 3.35
3616 4440 5.704053 TCTTTTAGTCGTCCTTTGGGATTTC 59.296 40.000 0.00 0.00 44.33 2.17
3629 4453 5.844004 TGCTTCTTCTTCTCTTTTAGTCGT 58.156 37.500 0.00 0.00 0.00 4.34
3635 4459 5.934781 TCTTCCTGCTTCTTCTTCTCTTTT 58.065 37.500 0.00 0.00 0.00 2.27
3638 4462 4.346418 TGTTCTTCCTGCTTCTTCTTCTCT 59.654 41.667 0.00 0.00 0.00 3.10
3641 4465 5.106357 GGATTGTTCTTCCTGCTTCTTCTTC 60.106 44.000 0.00 0.00 0.00 2.87
3642 4466 4.764308 GGATTGTTCTTCCTGCTTCTTCTT 59.236 41.667 0.00 0.00 0.00 2.52
3643 4467 4.202503 TGGATTGTTCTTCCTGCTTCTTCT 60.203 41.667 0.00 0.00 34.17 2.85
3644 4468 4.074970 TGGATTGTTCTTCCTGCTTCTTC 58.925 43.478 0.00 0.00 34.17 2.87
3645 4469 3.823304 GTGGATTGTTCTTCCTGCTTCTT 59.177 43.478 0.00 0.00 34.17 2.52
3646 4470 3.181440 TGTGGATTGTTCTTCCTGCTTCT 60.181 43.478 0.00 0.00 34.17 2.85
3679 4503 7.093902 GGAGGTGAGATGAAATATATACCGTGA 60.094 40.741 0.00 0.00 32.15 4.35
3687 4511 6.296087 GGCATCTGGAGGTGAGATGAAATATA 60.296 42.308 12.81 0.00 46.73 0.86
3749 4573 6.600427 GGATCCAGGCATTCAAATTTCAAATT 59.400 34.615 6.95 0.00 0.00 1.82
3782 4606 2.364324 ACTCTGCGTGTTTCCTAAGTCA 59.636 45.455 0.00 0.00 0.00 3.41
3783 4607 3.027974 ACTCTGCGTGTTTCCTAAGTC 57.972 47.619 0.00 0.00 0.00 3.01
3784 4608 3.131396 CAACTCTGCGTGTTTCCTAAGT 58.869 45.455 0.00 0.00 0.00 2.24
3785 4609 2.480419 CCAACTCTGCGTGTTTCCTAAG 59.520 50.000 0.00 0.00 0.00 2.18
3804 4630 6.759827 GCTATGGATTTCGAGTTTAACTACCA 59.240 38.462 0.00 2.45 0.00 3.25
3809 4635 4.569564 ACGGCTATGGATTTCGAGTTTAAC 59.430 41.667 0.00 0.00 0.00 2.01
3829 4655 2.808543 GCTTCCAGCCATTAGAATACGG 59.191 50.000 0.00 0.00 34.48 4.02
3831 4657 5.703130 CCTAAGCTTCCAGCCATTAGAATAC 59.297 44.000 0.00 0.00 43.77 1.89
3869 4695 5.481105 TGCAGGGCAATAATTTCTCTTTTG 58.519 37.500 0.00 0.00 34.76 2.44
3871 4697 5.018809 TCTGCAGGGCAATAATTTCTCTTT 58.981 37.500 15.13 0.00 38.41 2.52
3906 4732 5.804944 ATGGTTTCCAAATGTGATGTTGA 57.195 34.783 0.00 0.00 36.95 3.18
3908 4734 6.644592 CGTTAATGGTTTCCAAATGTGATGTT 59.355 34.615 0.00 0.00 36.95 2.71
3909 4735 6.155827 CGTTAATGGTTTCCAAATGTGATGT 58.844 36.000 0.00 0.00 36.95 3.06
3993 4819 6.255020 GTGCCTTTTGATATGCAAGATTTCTG 59.745 38.462 0.00 0.00 37.87 3.02
4110 4937 5.879223 AGAAAGTATAGCTGATATGCATGGC 59.121 40.000 10.16 8.43 34.99 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.