Multiple sequence alignment - TraesCS5B01G089000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G089000 chr5B 100.000 7043 0 0 1 7043 114430870 114437912 0.000000e+00 13007.0
1 TraesCS5B01G089000 chr5B 87.042 355 37 6 1 349 539932659 539932308 6.620000e-105 392.0
2 TraesCS5B01G089000 chr5B 89.123 285 29 1 471 753 467949471 467949755 3.130000e-93 353.0
3 TraesCS5B01G089000 chr5B 84.034 357 45 9 1 351 657272698 657273048 4.070000e-87 333.0
4 TraesCS5B01G089000 chr5D 97.391 5711 88 17 784 6466 104601079 104595402 0.000000e+00 9664.0
5 TraesCS5B01G089000 chr5D 98.632 585 7 1 6460 7043 104583238 104582654 0.000000e+00 1035.0
6 TraesCS5B01G089000 chr5D 88.502 287 30 2 471 755 481803846 481804131 1.880000e-90 344.0
7 TraesCS5B01G089000 chr5D 90.323 155 14 1 6494 6647 482863771 482863925 1.200000e-47 202.0
8 TraesCS5B01G089000 chr5D 85.217 115 17 0 6648 6762 104582979 104582865 1.240000e-22 119.0
9 TraesCS5B01G089000 chr5A 91.918 2153 120 23 4905 7042 108588126 108590239 0.000000e+00 2963.0
10 TraesCS5B01G089000 chr5A 94.783 1821 55 15 2190 3994 108585344 108587140 0.000000e+00 2800.0
11 TraesCS5B01G089000 chr5A 92.360 1335 48 20 750 2047 108577536 108578853 0.000000e+00 1851.0
12 TraesCS5B01G089000 chr5A 94.415 931 39 7 3985 4907 108587164 108588089 0.000000e+00 1419.0
13 TraesCS5B01G089000 chr5A 89.085 284 29 1 471 752 385416361 385416078 1.120000e-92 351.0
14 TraesCS5B01G089000 chr5A 84.136 353 45 7 1 347 706044365 706044018 1.460000e-86 331.0
15 TraesCS5B01G089000 chr5A 89.032 155 16 1 6494 6647 329235219 329235065 2.590000e-44 191.0
16 TraesCS5B01G089000 chr5A 86.316 95 5 5 2113 2204 108585242 108585331 5.820000e-16 97.1
17 TraesCS5B01G089000 chrUn 100.000 419 0 0 3195 3613 476947169 476946751 0.000000e+00 774.0
18 TraesCS5B01G089000 chrUn 87.742 155 18 1 6494 6647 301211359 301211513 5.610000e-41 180.0
19 TraesCS5B01G089000 chrUn 87.742 155 18 1 6494 6647 362937266 362937112 5.610000e-41 180.0
20 TraesCS5B01G089000 chr2D 89.753 283 27 1 471 751 247054943 247054661 1.870000e-95 361.0
21 TraesCS5B01G089000 chr1D 89.474 285 28 1 471 753 459519896 459519612 6.720000e-95 359.0
22 TraesCS5B01G089000 chr1D 88.608 158 11 7 6494 6647 116476651 116476497 1.210000e-42 185.0
23 TraesCS5B01G089000 chr1D 79.144 187 31 5 6690 6876 374343711 374343533 9.590000e-24 122.0
24 TraesCS5B01G089000 chr6D 89.437 284 27 2 471 752 379567865 379568147 8.690000e-94 355.0
25 TraesCS5B01G089000 chr6D 83.473 357 47 8 1 349 114310674 114310322 8.810000e-84 322.0
26 TraesCS5B01G089000 chr6D 83.523 352 47 7 1 347 412285263 412285608 1.140000e-82 318.0
27 TraesCS5B01G089000 chr4D 89.324 281 28 1 471 749 7927640 7927920 1.120000e-92 351.0
28 TraesCS5B01G089000 chr4D 89.085 284 29 1 471 752 438105486 438105203 1.120000e-92 351.0
29 TraesCS5B01G089000 chr1A 89.085 284 29 1 471 752 562776483 562776200 1.120000e-92 351.0
30 TraesCS5B01G089000 chr1A 80.423 189 28 6 6689 6876 473911619 473911439 1.230000e-27 135.0
31 TraesCS5B01G089000 chr1A 87.097 62 7 1 1629 1690 532266802 532266862 1.270000e-07 69.4
32 TraesCS5B01G089000 chr6B 84.703 353 45 6 1 347 100287981 100288330 1.880000e-90 344.0
33 TraesCS5B01G089000 chr6B 80.986 142 21 5 6763 6901 120705734 120705596 2.690000e-19 108.0
34 TraesCS5B01G089000 chr1B 84.419 353 43 5 1 347 625100590 625100244 3.150000e-88 337.0
35 TraesCS5B01G089000 chr1B 83.657 361 48 5 1 354 489637493 489637849 5.270000e-86 329.0
36 TraesCS5B01G089000 chr1B 78.075 187 33 5 6690 6876 498947177 498946999 2.080000e-20 111.0
37 TraesCS5B01G089000 chr2B 83.944 355 46 5 1 350 145069530 145069182 5.270000e-86 329.0
38 TraesCS5B01G089000 chr7A 89.677 155 15 1 6494 6647 391899246 391899400 5.570000e-46 196.0
39 TraesCS5B01G089000 chr2A 89.032 155 16 1 6494 6647 604136852 604136698 2.590000e-44 191.0
40 TraesCS5B01G089000 chr6A 80.734 109 18 3 6766 6874 64501060 64500955 1.630000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G089000 chr5B 114430870 114437912 7042 False 13007.000 13007 100.0000 1 7043 1 chr5B.!!$F1 7042
1 TraesCS5B01G089000 chr5D 104595402 104601079 5677 True 9664.000 9664 97.3910 784 6466 1 chr5D.!!$R1 5682
2 TraesCS5B01G089000 chr5D 104582654 104583238 584 True 577.000 1035 91.9245 6460 7043 2 chr5D.!!$R2 583
3 TraesCS5B01G089000 chr5A 108577536 108578853 1317 False 1851.000 1851 92.3600 750 2047 1 chr5A.!!$F1 1297
4 TraesCS5B01G089000 chr5A 108585242 108590239 4997 False 1819.775 2963 91.8580 2113 7042 4 chr5A.!!$F2 4929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 435 0.029834 CGCTTGACTGCTGCTTGTTT 59.970 50.0 0.00 0.0 0.00 2.83 F
437 438 0.102844 TTGACTGCTGCTTGTTTGCC 59.897 50.0 0.00 0.0 0.00 4.52 F
447 448 0.109597 CTTGTTTGCCACTGCGATCC 60.110 55.0 0.00 0.0 41.78 3.36 F
782 783 0.179119 CGTTTCCTCCGCCGATAACT 60.179 55.0 0.00 0.0 0.00 2.24 F
2324 2408 0.251297 CCATTGACCCCACAGCTTGA 60.251 55.0 0.00 0.0 0.00 3.02 F
2424 2509 0.537653 GACACCTGGCCTTCTCTACC 59.462 60.0 3.32 0.0 0.00 3.18 F
5096 5292 0.246086 GCTCTGTCACAGGAGAGGTG 59.754 60.0 4.57 0.0 36.91 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1476 1495 0.591741 CGACGGCCTCGAAGATGTAC 60.592 60.000 16.62 0.00 46.14 2.90 R
2149 2202 1.133482 CCACTTCCAGGGTGGTTTCTT 60.133 52.381 6.70 0.00 46.42 2.52 R
2269 2353 1.353022 ACCGCATTTCAAGGGGAACTA 59.647 47.619 3.17 0.00 41.25 2.24 R
2656 2750 1.817099 GCTGGCCTTGGAGACATCG 60.817 63.158 3.32 0.00 42.32 3.84 R
4826 4974 5.376625 TGTGCTTCTCTAAAATGTTGTCCT 58.623 37.500 0.00 0.00 0.00 3.85 R
5175 5371 7.900782 ATATTACAACTTCAGGTGTGTACAC 57.099 36.000 19.36 19.36 45.72 2.90 R
6481 6682 0.590195 GAGCACCACAGCAAGTTCAG 59.410 55.000 0.00 0.00 36.85 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 9.658799 TGAATTATTTGTTGTTGAACCTTTTGA 57.341 25.926 0.00 0.00 0.00 2.69
73 74 8.791327 ATTTGTTGTTGAACCTTTTGATTTCT 57.209 26.923 0.00 0.00 0.00 2.52
74 75 9.883142 ATTTGTTGTTGAACCTTTTGATTTCTA 57.117 25.926 0.00 0.00 0.00 2.10
75 76 9.883142 TTTGTTGTTGAACCTTTTGATTTCTAT 57.117 25.926 0.00 0.00 0.00 1.98
76 77 9.883142 TTGTTGTTGAACCTTTTGATTTCTATT 57.117 25.926 0.00 0.00 0.00 1.73
77 78 9.311916 TGTTGTTGAACCTTTTGATTTCTATTG 57.688 29.630 0.00 0.00 0.00 1.90
78 79 9.528018 GTTGTTGAACCTTTTGATTTCTATTGA 57.472 29.630 0.00 0.00 0.00 2.57
85 86 8.986477 ACCTTTTGATTTCTATTGATTTTCGG 57.014 30.769 0.00 0.00 0.00 4.30
86 87 8.585018 ACCTTTTGATTTCTATTGATTTTCGGT 58.415 29.630 0.00 0.00 0.00 4.69
87 88 8.863049 CCTTTTGATTTCTATTGATTTTCGGTG 58.137 33.333 0.00 0.00 0.00 4.94
88 89 9.624697 CTTTTGATTTCTATTGATTTTCGGTGA 57.375 29.630 0.00 0.00 0.00 4.02
90 91 9.571810 TTTGATTTCTATTGATTTTCGGTGATG 57.428 29.630 0.00 0.00 0.00 3.07
91 92 8.504812 TGATTTCTATTGATTTTCGGTGATGA 57.495 30.769 0.00 0.00 0.00 2.92
92 93 8.955388 TGATTTCTATTGATTTTCGGTGATGAA 58.045 29.630 0.00 0.00 0.00 2.57
93 94 9.226345 GATTTCTATTGATTTTCGGTGATGAAC 57.774 33.333 0.00 0.00 0.00 3.18
94 95 7.921786 TTCTATTGATTTTCGGTGATGAACT 57.078 32.000 0.00 0.00 0.00 3.01
95 96 9.443323 TTTCTATTGATTTTCGGTGATGAACTA 57.557 29.630 0.00 0.00 0.00 2.24
96 97 9.613428 TTCTATTGATTTTCGGTGATGAACTAT 57.387 29.630 0.00 0.00 0.00 2.12
97 98 9.045223 TCTATTGATTTTCGGTGATGAACTATG 57.955 33.333 0.00 0.00 0.00 2.23
98 99 7.630242 ATTGATTTTCGGTGATGAACTATGT 57.370 32.000 0.00 0.00 0.00 2.29
99 100 6.421377 TGATTTTCGGTGATGAACTATGTG 57.579 37.500 0.00 0.00 0.00 3.21
100 101 6.169800 TGATTTTCGGTGATGAACTATGTGA 58.830 36.000 0.00 0.00 0.00 3.58
101 102 6.823182 TGATTTTCGGTGATGAACTATGTGAT 59.177 34.615 0.00 0.00 0.00 3.06
102 103 7.984617 TGATTTTCGGTGATGAACTATGTGATA 59.015 33.333 0.00 0.00 0.00 2.15
103 104 8.731275 ATTTTCGGTGATGAACTATGTGATAA 57.269 30.769 0.00 0.00 0.00 1.75
104 105 8.554835 TTTTCGGTGATGAACTATGTGATAAA 57.445 30.769 0.00 0.00 0.00 1.40
105 106 8.554835 TTTCGGTGATGAACTATGTGATAAAA 57.445 30.769 0.00 0.00 0.00 1.52
106 107 8.554835 TTCGGTGATGAACTATGTGATAAAAA 57.445 30.769 0.00 0.00 0.00 1.94
129 130 5.574815 AATTACTTGTGTTGAATTTGCGC 57.425 34.783 0.00 0.00 0.00 6.09
130 131 1.851658 ACTTGTGTTGAATTTGCGCC 58.148 45.000 4.18 0.00 0.00 6.53
131 132 0.777631 CTTGTGTTGAATTTGCGCCG 59.222 50.000 4.18 0.00 0.00 6.46
132 133 0.382158 TTGTGTTGAATTTGCGCCGA 59.618 45.000 4.18 0.00 0.00 5.54
133 134 0.382158 TGTGTTGAATTTGCGCCGAA 59.618 45.000 4.18 0.00 0.00 4.30
134 135 0.775861 GTGTTGAATTTGCGCCGAAC 59.224 50.000 4.18 0.00 0.00 3.95
135 136 0.318275 TGTTGAATTTGCGCCGAACC 60.318 50.000 4.18 0.00 0.00 3.62
136 137 0.318275 GTTGAATTTGCGCCGAACCA 60.318 50.000 4.18 0.00 0.00 3.67
137 138 0.318275 TTGAATTTGCGCCGAACCAC 60.318 50.000 4.18 0.00 0.00 4.16
138 139 1.795962 GAATTTGCGCCGAACCACG 60.796 57.895 4.18 0.00 42.18 4.94
147 148 4.172346 CGAACCACGGCGAATACA 57.828 55.556 16.62 0.00 38.46 2.29
148 149 1.995991 CGAACCACGGCGAATACAG 59.004 57.895 16.62 0.00 38.46 2.74
149 150 1.418342 CGAACCACGGCGAATACAGG 61.418 60.000 16.62 7.78 38.46 4.00
150 151 1.702491 GAACCACGGCGAATACAGGC 61.702 60.000 16.62 0.00 0.00 4.85
151 152 2.895372 CCACGGCGAATACAGGCC 60.895 66.667 16.62 0.00 45.95 5.19
155 156 4.456806 GGCGAATACAGGCCGATT 57.543 55.556 0.00 0.00 39.93 3.34
156 157 2.702847 GGCGAATACAGGCCGATTT 58.297 52.632 0.00 0.00 39.93 2.17
157 158 0.307760 GGCGAATACAGGCCGATTTG 59.692 55.000 0.00 4.05 39.93 2.32
158 159 0.317020 GCGAATACAGGCCGATTTGC 60.317 55.000 18.70 18.70 35.77 3.68
159 160 0.042188 CGAATACAGGCCGATTTGCG 60.042 55.000 0.00 0.00 40.47 4.85
160 161 0.317020 GAATACAGGCCGATTTGCGC 60.317 55.000 0.00 0.00 39.11 6.09
161 162 1.724582 AATACAGGCCGATTTGCGCC 61.725 55.000 4.18 0.00 39.11 6.53
164 165 4.856801 AGGCCGATTTGCGCCGAT 62.857 61.111 4.18 0.00 39.89 4.18
165 166 2.970324 GGCCGATTTGCGCCGATA 60.970 61.111 4.18 0.00 39.11 2.92
166 167 2.325082 GGCCGATTTGCGCCGATAT 61.325 57.895 4.18 0.00 39.11 1.63
167 168 1.132640 GCCGATTTGCGCCGATATC 59.867 57.895 4.18 1.39 39.11 1.63
168 169 1.565156 GCCGATTTGCGCCGATATCA 61.565 55.000 4.18 0.00 39.11 2.15
169 170 0.865111 CCGATTTGCGCCGATATCAA 59.135 50.000 4.18 0.00 39.11 2.57
170 171 1.136252 CCGATTTGCGCCGATATCAAG 60.136 52.381 4.18 0.00 39.11 3.02
171 172 1.722751 CGATTTGCGCCGATATCAAGC 60.723 52.381 4.18 4.14 0.00 4.01
172 173 1.532868 GATTTGCGCCGATATCAAGCT 59.467 47.619 4.18 0.00 0.00 3.74
173 174 0.657312 TTTGCGCCGATATCAAGCTG 59.343 50.000 4.18 7.38 0.00 4.24
174 175 0.179086 TTGCGCCGATATCAAGCTGA 60.179 50.000 4.18 0.00 0.00 4.26
175 176 0.033920 TGCGCCGATATCAAGCTGAT 59.966 50.000 4.18 0.00 40.72 2.90
176 177 1.151668 GCGCCGATATCAAGCTGATT 58.848 50.000 11.71 0.00 38.26 2.57
177 178 1.532868 GCGCCGATATCAAGCTGATTT 59.467 47.619 11.71 0.00 38.26 2.17
178 179 2.031682 GCGCCGATATCAAGCTGATTTT 60.032 45.455 11.71 0.00 38.26 1.82
179 180 3.548818 GCGCCGATATCAAGCTGATTTTT 60.549 43.478 11.71 0.00 38.26 1.94
197 198 4.417426 TTTTTACCGAAATTGGGCCAAA 57.583 36.364 24.97 0.00 0.00 3.28
198 199 4.417426 TTTTACCGAAATTGGGCCAAAA 57.583 36.364 24.97 8.20 0.00 2.44
199 200 4.417426 TTTACCGAAATTGGGCCAAAAA 57.583 36.364 24.97 14.14 0.00 1.94
200 201 2.542020 ACCGAAATTGGGCCAAAAAG 57.458 45.000 24.97 14.38 0.00 2.27
201 202 1.155889 CCGAAATTGGGCCAAAAAGC 58.844 50.000 24.97 11.91 0.00 3.51
202 203 0.789601 CGAAATTGGGCCAAAAAGCG 59.210 50.000 24.97 19.43 0.00 4.68
203 204 1.604185 CGAAATTGGGCCAAAAAGCGA 60.604 47.619 24.97 0.00 0.00 4.93
204 205 2.068519 GAAATTGGGCCAAAAAGCGAG 58.931 47.619 24.97 0.00 0.00 5.03
205 206 0.320683 AATTGGGCCAAAAAGCGAGC 60.321 50.000 24.97 0.00 0.00 5.03
206 207 2.490993 ATTGGGCCAAAAAGCGAGCG 62.491 55.000 24.97 0.00 0.00 5.03
237 238 4.458951 AAAAATGAGCTGATATCGACGC 57.541 40.909 0.00 1.00 0.00 5.19
238 239 2.071688 AATGAGCTGATATCGACGCC 57.928 50.000 0.00 0.00 0.00 5.68
239 240 1.252175 ATGAGCTGATATCGACGCCT 58.748 50.000 0.00 0.00 0.00 5.52
240 241 1.892209 TGAGCTGATATCGACGCCTA 58.108 50.000 0.00 0.00 0.00 3.93
241 242 1.807142 TGAGCTGATATCGACGCCTAG 59.193 52.381 0.00 0.00 0.00 3.02
242 243 1.131504 GAGCTGATATCGACGCCTAGG 59.868 57.143 3.67 3.67 0.00 3.02
243 244 0.171455 GCTGATATCGACGCCTAGGG 59.829 60.000 11.72 3.13 0.00 3.53
244 245 0.811915 CTGATATCGACGCCTAGGGG 59.188 60.000 23.57 23.57 0.00 4.79
245 246 0.611062 TGATATCGACGCCTAGGGGG 60.611 60.000 27.87 12.63 41.67 5.40
266 267 3.822192 GCGGCCGGAAACCCAATC 61.822 66.667 29.38 1.03 0.00 2.67
267 268 3.505184 CGGCCGGAAACCCAATCG 61.505 66.667 20.10 0.00 0.00 3.34
268 269 3.822192 GGCCGGAAACCCAATCGC 61.822 66.667 5.05 0.00 0.00 4.58
269 270 3.822192 GCCGGAAACCCAATCGCC 61.822 66.667 5.05 0.00 0.00 5.54
270 271 3.138128 CCGGAAACCCAATCGCCC 61.138 66.667 0.00 0.00 0.00 6.13
271 272 3.138128 CGGAAACCCAATCGCCCC 61.138 66.667 0.00 0.00 0.00 5.80
272 273 2.758327 GGAAACCCAATCGCCCCC 60.758 66.667 0.00 0.00 0.00 5.40
286 287 3.377759 CCCCCGATTTTTGCGCCA 61.378 61.111 4.18 0.00 0.00 5.69
287 288 2.181525 CCCCGATTTTTGCGCCAG 59.818 61.111 4.18 0.00 0.00 4.85
288 289 2.506881 CCCGATTTTTGCGCCAGC 60.507 61.111 4.18 0.00 45.41 4.85
289 290 2.568090 CCGATTTTTGCGCCAGCT 59.432 55.556 4.18 0.00 45.42 4.24
290 291 1.514873 CCGATTTTTGCGCCAGCTC 60.515 57.895 4.18 0.00 45.42 4.09
291 292 1.864750 CGATTTTTGCGCCAGCTCG 60.865 57.895 4.18 3.34 45.42 5.03
292 293 1.210155 GATTTTTGCGCCAGCTCGT 59.790 52.632 4.18 0.00 45.42 4.18
293 294 0.794605 GATTTTTGCGCCAGCTCGTC 60.795 55.000 4.18 0.00 45.42 4.20
294 295 2.200170 ATTTTTGCGCCAGCTCGTCC 62.200 55.000 4.18 0.00 45.42 4.79
302 303 4.069232 CAGCTCGTCCCCAAGCGA 62.069 66.667 0.00 0.00 43.37 4.93
303 304 4.070552 AGCTCGTCCCCAAGCGAC 62.071 66.667 0.00 0.00 43.37 5.19
308 309 4.296265 GTCCCCAAGCGACGATTT 57.704 55.556 0.00 0.00 0.00 2.17
309 310 2.551644 GTCCCCAAGCGACGATTTT 58.448 52.632 0.00 0.00 0.00 1.82
310 311 0.446616 GTCCCCAAGCGACGATTTTC 59.553 55.000 0.00 0.00 0.00 2.29
311 312 0.035598 TCCCCAAGCGACGATTTTCA 59.964 50.000 0.00 0.00 0.00 2.69
312 313 0.878416 CCCCAAGCGACGATTTTCAA 59.122 50.000 0.00 0.00 0.00 2.69
313 314 1.135689 CCCCAAGCGACGATTTTCAAG 60.136 52.381 0.00 0.00 0.00 3.02
314 315 1.606606 CCAAGCGACGATTTTCAAGC 58.393 50.000 0.00 0.00 0.00 4.01
315 316 1.606606 CAAGCGACGATTTTCAAGCC 58.393 50.000 0.00 0.00 0.00 4.35
316 317 1.197721 CAAGCGACGATTTTCAAGCCT 59.802 47.619 0.00 0.00 0.00 4.58
317 318 1.079503 AGCGACGATTTTCAAGCCTC 58.920 50.000 0.00 0.00 0.00 4.70
318 319 0.796312 GCGACGATTTTCAAGCCTCA 59.204 50.000 0.00 0.00 0.00 3.86
319 320 1.398390 GCGACGATTTTCAAGCCTCAT 59.602 47.619 0.00 0.00 0.00 2.90
320 321 2.789092 GCGACGATTTTCAAGCCTCATG 60.789 50.000 0.00 0.00 0.00 3.07
321 322 2.416547 CGACGATTTTCAAGCCTCATGT 59.583 45.455 0.00 0.00 0.00 3.21
322 323 3.725895 CGACGATTTTCAAGCCTCATGTG 60.726 47.826 0.00 0.00 0.00 3.21
323 324 2.489329 ACGATTTTCAAGCCTCATGTGG 59.511 45.455 9.54 9.54 0.00 4.17
324 325 2.159338 CGATTTTCAAGCCTCATGTGGG 60.159 50.000 15.39 9.19 0.00 4.61
325 326 1.631405 TTTTCAAGCCTCATGTGGGG 58.369 50.000 15.39 6.82 0.00 4.96
326 327 0.251742 TTTCAAGCCTCATGTGGGGG 60.252 55.000 15.39 4.49 0.00 5.40
327 328 2.757099 CAAGCCTCATGTGGGGGC 60.757 66.667 15.39 13.22 45.57 5.80
328 329 4.066139 AAGCCTCATGTGGGGGCC 62.066 66.667 15.39 0.00 46.31 5.80
330 331 4.380945 GCCTCATGTGGGGGCCAA 62.381 66.667 15.39 0.00 39.96 4.52
331 332 2.362889 CCTCATGTGGGGGCCAAC 60.363 66.667 4.39 3.36 34.18 3.77
332 333 2.751436 CTCATGTGGGGGCCAACG 60.751 66.667 4.39 0.00 34.18 4.10
333 334 4.358841 TCATGTGGGGGCCAACGG 62.359 66.667 4.39 0.00 34.18 4.44
344 345 3.997672 GCCAACGGCTAGAGATGAT 57.002 52.632 0.00 0.00 46.69 2.45
345 346 1.789506 GCCAACGGCTAGAGATGATC 58.210 55.000 0.00 0.00 46.69 2.92
346 347 1.342819 GCCAACGGCTAGAGATGATCT 59.657 52.381 0.00 0.00 46.69 2.75
347 348 2.558795 GCCAACGGCTAGAGATGATCTA 59.441 50.000 0.00 0.00 46.69 1.98
348 349 3.005897 GCCAACGGCTAGAGATGATCTAA 59.994 47.826 0.00 0.00 46.69 2.10
349 350 4.804108 CCAACGGCTAGAGATGATCTAAG 58.196 47.826 0.00 0.00 40.06 2.18
350 351 4.279671 CCAACGGCTAGAGATGATCTAAGT 59.720 45.833 0.00 0.00 40.06 2.24
351 352 5.473846 CCAACGGCTAGAGATGATCTAAGTA 59.526 44.000 0.00 0.00 40.06 2.24
352 353 6.348950 CCAACGGCTAGAGATGATCTAAGTAG 60.349 46.154 0.00 0.00 40.06 2.57
353 354 5.871834 ACGGCTAGAGATGATCTAAGTAGT 58.128 41.667 0.00 0.00 40.06 2.73
354 355 7.006865 ACGGCTAGAGATGATCTAAGTAGTA 57.993 40.000 0.00 0.00 40.06 1.82
355 356 6.875195 ACGGCTAGAGATGATCTAAGTAGTAC 59.125 42.308 0.00 0.00 40.06 2.73
356 357 7.101054 CGGCTAGAGATGATCTAAGTAGTACT 58.899 42.308 0.00 0.00 40.06 2.73
357 358 7.277098 CGGCTAGAGATGATCTAAGTAGTACTC 59.723 44.444 2.58 0.00 40.06 2.59
358 359 8.319146 GGCTAGAGATGATCTAAGTAGTACTCT 58.681 40.741 2.58 0.00 40.06 3.24
359 360 9.720769 GCTAGAGATGATCTAAGTAGTACTCTT 57.279 37.037 2.58 5.77 40.06 2.85
377 378 8.655651 GTACTCTTGTAGTAGTACTCGGTAAT 57.344 38.462 5.96 0.00 43.05 1.89
378 379 7.784633 ACTCTTGTAGTAGTACTCGGTAATC 57.215 40.000 5.96 0.00 36.36 1.75
379 380 6.478344 ACTCTTGTAGTAGTACTCGGTAATCG 59.522 42.308 5.96 0.00 36.36 3.34
380 381 5.755375 TCTTGTAGTAGTACTCGGTAATCGG 59.245 44.000 5.96 0.00 39.77 4.18
381 382 3.809832 TGTAGTAGTACTCGGTAATCGGC 59.190 47.826 5.96 0.00 39.77 5.54
382 383 2.225467 AGTAGTACTCGGTAATCGGCC 58.775 52.381 0.00 0.00 39.77 6.13
383 384 1.268079 GTAGTACTCGGTAATCGGCCC 59.732 57.143 0.00 0.00 39.77 5.80
384 385 0.106318 AGTACTCGGTAATCGGCCCT 60.106 55.000 0.00 0.00 39.77 5.19
385 386 0.313357 GTACTCGGTAATCGGCCCTC 59.687 60.000 0.00 0.00 39.77 4.30
386 387 0.184451 TACTCGGTAATCGGCCCTCT 59.816 55.000 0.00 0.00 39.77 3.69
387 388 0.686769 ACTCGGTAATCGGCCCTCTT 60.687 55.000 0.00 0.00 39.77 2.85
388 389 0.032267 CTCGGTAATCGGCCCTCTTC 59.968 60.000 0.00 0.00 39.77 2.87
389 390 0.396695 TCGGTAATCGGCCCTCTTCT 60.397 55.000 0.00 0.00 39.77 2.85
390 391 1.133699 TCGGTAATCGGCCCTCTTCTA 60.134 52.381 0.00 0.00 39.77 2.10
391 392 1.684983 CGGTAATCGGCCCTCTTCTAA 59.315 52.381 0.00 0.00 34.75 2.10
392 393 2.299297 CGGTAATCGGCCCTCTTCTAAT 59.701 50.000 0.00 0.00 34.75 1.73
393 394 3.244112 CGGTAATCGGCCCTCTTCTAATT 60.244 47.826 0.00 0.00 34.75 1.40
394 395 4.316645 GGTAATCGGCCCTCTTCTAATTC 58.683 47.826 0.00 0.00 0.00 2.17
395 396 4.040584 GGTAATCGGCCCTCTTCTAATTCT 59.959 45.833 0.00 0.00 0.00 2.40
396 397 4.779993 AATCGGCCCTCTTCTAATTCTT 57.220 40.909 0.00 0.00 0.00 2.52
397 398 5.888982 AATCGGCCCTCTTCTAATTCTTA 57.111 39.130 0.00 0.00 0.00 2.10
398 399 5.888982 ATCGGCCCTCTTCTAATTCTTAA 57.111 39.130 0.00 0.00 0.00 1.85
399 400 5.888982 TCGGCCCTCTTCTAATTCTTAAT 57.111 39.130 0.00 0.00 0.00 1.40
400 401 5.855045 TCGGCCCTCTTCTAATTCTTAATC 58.145 41.667 0.00 0.00 0.00 1.75
401 402 4.998033 CGGCCCTCTTCTAATTCTTAATCC 59.002 45.833 0.00 0.00 0.00 3.01
402 403 5.317808 GGCCCTCTTCTAATTCTTAATCCC 58.682 45.833 0.00 0.00 0.00 3.85
403 404 4.998033 GCCCTCTTCTAATTCTTAATCCCG 59.002 45.833 0.00 0.00 0.00 5.14
404 405 5.454897 GCCCTCTTCTAATTCTTAATCCCGT 60.455 44.000 0.00 0.00 0.00 5.28
405 406 6.239515 GCCCTCTTCTAATTCTTAATCCCGTA 60.240 42.308 0.00 0.00 0.00 4.02
406 407 7.527363 GCCCTCTTCTAATTCTTAATCCCGTAT 60.527 40.741 0.00 0.00 0.00 3.06
407 408 7.819900 CCCTCTTCTAATTCTTAATCCCGTATG 59.180 40.741 0.00 0.00 0.00 2.39
408 409 8.368668 CCTCTTCTAATTCTTAATCCCGTATGT 58.631 37.037 0.00 0.00 0.00 2.29
409 410 9.765795 CTCTTCTAATTCTTAATCCCGTATGTT 57.234 33.333 0.00 0.00 0.00 2.71
410 411 9.760077 TCTTCTAATTCTTAATCCCGTATGTTC 57.240 33.333 0.00 0.00 0.00 3.18
411 412 8.897872 TTCTAATTCTTAATCCCGTATGTTCC 57.102 34.615 0.00 0.00 0.00 3.62
412 413 8.258850 TCTAATTCTTAATCCCGTATGTTCCT 57.741 34.615 0.00 0.00 0.00 3.36
413 414 8.711170 TCTAATTCTTAATCCCGTATGTTCCTT 58.289 33.333 0.00 0.00 0.00 3.36
414 415 9.338622 CTAATTCTTAATCCCGTATGTTCCTTT 57.661 33.333 0.00 0.00 0.00 3.11
415 416 7.803279 ATTCTTAATCCCGTATGTTCCTTTC 57.197 36.000 0.00 0.00 0.00 2.62
416 417 5.353938 TCTTAATCCCGTATGTTCCTTTCG 58.646 41.667 0.00 0.00 0.00 3.46
417 418 1.949465 ATCCCGTATGTTCCTTTCGC 58.051 50.000 0.00 0.00 0.00 4.70
418 419 0.899720 TCCCGTATGTTCCTTTCGCT 59.100 50.000 0.00 0.00 0.00 4.93
419 420 1.276989 TCCCGTATGTTCCTTTCGCTT 59.723 47.619 0.00 0.00 0.00 4.68
420 421 1.396996 CCCGTATGTTCCTTTCGCTTG 59.603 52.381 0.00 0.00 0.00 4.01
421 422 2.343101 CCGTATGTTCCTTTCGCTTGA 58.657 47.619 0.00 0.00 0.00 3.02
422 423 2.093783 CCGTATGTTCCTTTCGCTTGAC 59.906 50.000 0.00 0.00 0.00 3.18
423 424 2.993899 CGTATGTTCCTTTCGCTTGACT 59.006 45.455 0.00 0.00 0.00 3.41
424 425 3.181530 CGTATGTTCCTTTCGCTTGACTG 60.182 47.826 0.00 0.00 0.00 3.51
425 426 0.944386 TGTTCCTTTCGCTTGACTGC 59.056 50.000 0.00 0.00 0.00 4.40
426 427 1.230324 GTTCCTTTCGCTTGACTGCT 58.770 50.000 0.00 0.00 0.00 4.24
427 428 1.069636 GTTCCTTTCGCTTGACTGCTG 60.070 52.381 0.00 0.00 0.00 4.41
428 429 1.208614 CCTTTCGCTTGACTGCTGC 59.791 57.895 0.00 0.00 0.00 5.25
429 430 1.233285 CCTTTCGCTTGACTGCTGCT 61.233 55.000 0.00 0.00 0.00 4.24
430 431 0.590195 CTTTCGCTTGACTGCTGCTT 59.410 50.000 0.00 0.00 0.00 3.91
431 432 0.308684 TTTCGCTTGACTGCTGCTTG 59.691 50.000 0.00 0.00 0.00 4.01
432 433 0.815213 TTCGCTTGACTGCTGCTTGT 60.815 50.000 0.00 0.00 0.00 3.16
433 434 0.815213 TCGCTTGACTGCTGCTTGTT 60.815 50.000 0.00 0.00 0.00 2.83
434 435 0.029834 CGCTTGACTGCTGCTTGTTT 59.970 50.000 0.00 0.00 0.00 2.83
435 436 1.484356 GCTTGACTGCTGCTTGTTTG 58.516 50.000 0.00 0.00 0.00 2.93
436 437 1.484356 CTTGACTGCTGCTTGTTTGC 58.516 50.000 0.00 0.00 0.00 3.68
437 438 0.102844 TTGACTGCTGCTTGTTTGCC 59.897 50.000 0.00 0.00 0.00 4.52
438 439 1.036481 TGACTGCTGCTTGTTTGCCA 61.036 50.000 0.00 0.00 0.00 4.92
439 440 0.595825 GACTGCTGCTTGTTTGCCAC 60.596 55.000 0.00 0.00 0.00 5.01
440 441 1.039233 ACTGCTGCTTGTTTGCCACT 61.039 50.000 0.00 0.00 0.00 4.00
441 442 0.596600 CTGCTGCTTGTTTGCCACTG 60.597 55.000 0.00 0.00 0.00 3.66
442 443 1.952635 GCTGCTTGTTTGCCACTGC 60.953 57.895 0.00 0.00 38.26 4.40
443 444 1.659335 CTGCTTGTTTGCCACTGCG 60.659 57.895 0.00 0.00 41.78 5.18
444 445 2.062361 CTGCTTGTTTGCCACTGCGA 62.062 55.000 0.00 0.00 41.78 5.10
445 446 1.286880 GCTTGTTTGCCACTGCGAT 59.713 52.632 0.00 0.00 41.78 4.58
446 447 0.730494 GCTTGTTTGCCACTGCGATC 60.730 55.000 0.00 0.00 41.78 3.69
447 448 0.109597 CTTGTTTGCCACTGCGATCC 60.110 55.000 0.00 0.00 41.78 3.36
448 449 1.523154 TTGTTTGCCACTGCGATCCC 61.523 55.000 0.00 0.00 41.78 3.85
449 450 1.675641 GTTTGCCACTGCGATCCCT 60.676 57.895 0.00 0.00 41.78 4.20
450 451 1.675310 TTTGCCACTGCGATCCCTG 60.675 57.895 0.00 0.00 41.78 4.45
451 452 2.123248 TTTGCCACTGCGATCCCTGA 62.123 55.000 0.00 0.00 41.78 3.86
452 453 2.123248 TTGCCACTGCGATCCCTGAA 62.123 55.000 0.00 0.00 41.78 3.02
453 454 1.377202 GCCACTGCGATCCCTGAAA 60.377 57.895 0.00 0.00 0.00 2.69
454 455 0.749454 GCCACTGCGATCCCTGAAAT 60.749 55.000 0.00 0.00 0.00 2.17
455 456 1.755179 CCACTGCGATCCCTGAAATT 58.245 50.000 0.00 0.00 0.00 1.82
456 457 1.672881 CCACTGCGATCCCTGAAATTC 59.327 52.381 0.00 0.00 0.00 2.17
457 458 2.636830 CACTGCGATCCCTGAAATTCT 58.363 47.619 0.00 0.00 0.00 2.40
458 459 2.611292 CACTGCGATCCCTGAAATTCTC 59.389 50.000 0.00 0.00 0.00 2.87
459 460 1.863454 CTGCGATCCCTGAAATTCTCG 59.137 52.381 0.00 0.00 0.00 4.04
460 461 1.480545 TGCGATCCCTGAAATTCTCGA 59.519 47.619 5.89 0.00 0.00 4.04
461 462 2.093711 TGCGATCCCTGAAATTCTCGAA 60.094 45.455 5.89 0.00 0.00 3.71
462 463 2.936498 GCGATCCCTGAAATTCTCGAAA 59.064 45.455 5.89 0.00 0.00 3.46
463 464 3.242446 GCGATCCCTGAAATTCTCGAAAC 60.242 47.826 5.89 0.00 0.00 2.78
464 465 3.309954 CGATCCCTGAAATTCTCGAAACC 59.690 47.826 0.00 0.00 0.00 3.27
465 466 3.780804 TCCCTGAAATTCTCGAAACCA 57.219 42.857 0.00 0.00 0.00 3.67
466 467 3.674997 TCCCTGAAATTCTCGAAACCAG 58.325 45.455 0.00 0.00 0.00 4.00
467 468 3.326588 TCCCTGAAATTCTCGAAACCAGA 59.673 43.478 0.00 0.00 0.00 3.86
468 469 4.019321 TCCCTGAAATTCTCGAAACCAGAT 60.019 41.667 0.00 0.00 0.00 2.90
469 470 4.333926 CCCTGAAATTCTCGAAACCAGATC 59.666 45.833 0.00 0.00 0.00 2.75
470 471 5.181748 CCTGAAATTCTCGAAACCAGATCT 58.818 41.667 0.00 0.00 0.00 2.75
471 472 6.341316 CCTGAAATTCTCGAAACCAGATCTA 58.659 40.000 0.00 0.00 0.00 1.98
472 473 6.478344 CCTGAAATTCTCGAAACCAGATCTAG 59.522 42.308 0.00 0.00 0.00 2.43
473 474 7.170393 TGAAATTCTCGAAACCAGATCTAGA 57.830 36.000 0.00 0.00 0.00 2.43
474 475 7.261325 TGAAATTCTCGAAACCAGATCTAGAG 58.739 38.462 0.00 0.00 0.00 2.43
475 476 7.122799 TGAAATTCTCGAAACCAGATCTAGAGA 59.877 37.037 0.00 0.92 0.00 3.10
476 477 7.411486 AATTCTCGAAACCAGATCTAGAGAA 57.589 36.000 17.23 17.23 44.11 2.87
477 478 6.443934 TTCTCGAAACCAGATCTAGAGAAG 57.556 41.667 13.79 0.00 38.04 2.85
478 479 5.502079 TCTCGAAACCAGATCTAGAGAAGT 58.498 41.667 0.00 0.00 31.35 3.01
479 480 5.946972 TCTCGAAACCAGATCTAGAGAAGTT 59.053 40.000 0.00 0.00 31.35 2.66
480 481 7.110810 TCTCGAAACCAGATCTAGAGAAGTTA 58.889 38.462 0.00 0.00 31.35 2.24
481 482 7.776030 TCTCGAAACCAGATCTAGAGAAGTTAT 59.224 37.037 0.00 0.00 31.35 1.89
482 483 8.975663 TCGAAACCAGATCTAGAGAAGTTATA 57.024 34.615 0.00 0.00 0.00 0.98
483 484 9.058174 TCGAAACCAGATCTAGAGAAGTTATAG 57.942 37.037 0.00 0.00 0.00 1.31
484 485 8.842280 CGAAACCAGATCTAGAGAAGTTATAGT 58.158 37.037 0.00 0.00 0.00 2.12
487 488 9.577222 AACCAGATCTAGAGAAGTTATAGTACC 57.423 37.037 0.00 0.00 0.00 3.34
488 489 8.165397 ACCAGATCTAGAGAAGTTATAGTACCC 58.835 40.741 0.00 0.00 0.00 3.69
489 490 8.387813 CCAGATCTAGAGAAGTTATAGTACCCT 58.612 40.741 0.00 0.00 0.00 4.34
603 604 7.809546 TTACATACAAACAAGTTGATGGTGA 57.190 32.000 10.54 0.00 39.87 4.02
604 605 6.317789 ACATACAAACAAGTTGATGGTGAG 57.682 37.500 10.54 1.60 39.87 3.51
605 606 6.061441 ACATACAAACAAGTTGATGGTGAGA 58.939 36.000 10.54 0.00 39.87 3.27
606 607 6.716628 ACATACAAACAAGTTGATGGTGAGAT 59.283 34.615 10.54 0.00 39.87 2.75
607 608 7.882791 ACATACAAACAAGTTGATGGTGAGATA 59.117 33.333 10.54 0.00 39.87 1.98
608 609 8.729756 CATACAAACAAGTTGATGGTGAGATAA 58.270 33.333 10.54 0.00 39.87 1.75
609 610 7.581213 ACAAACAAGTTGATGGTGAGATAAA 57.419 32.000 10.54 0.00 39.87 1.40
610 611 8.006298 ACAAACAAGTTGATGGTGAGATAAAA 57.994 30.769 10.54 0.00 39.87 1.52
611 612 8.641541 ACAAACAAGTTGATGGTGAGATAAAAT 58.358 29.630 10.54 0.00 39.87 1.82
612 613 9.480053 CAAACAAGTTGATGGTGAGATAAAATT 57.520 29.630 10.54 0.00 39.87 1.82
706 707 9.283768 TCTTTTTCATTTTACACTAGATGAGCA 57.716 29.630 0.00 0.00 30.92 4.26
707 708 9.334693 CTTTTTCATTTTACACTAGATGAGCAC 57.665 33.333 0.00 0.00 30.92 4.40
708 709 8.621532 TTTTCATTTTACACTAGATGAGCACT 57.378 30.769 0.00 0.00 30.92 4.40
709 710 7.601073 TTCATTTTACACTAGATGAGCACTG 57.399 36.000 0.00 0.00 30.92 3.66
710 711 6.701340 TCATTTTACACTAGATGAGCACTGT 58.299 36.000 0.00 0.00 0.00 3.55
711 712 7.836842 TCATTTTACACTAGATGAGCACTGTA 58.163 34.615 0.00 0.00 0.00 2.74
712 713 7.976175 TCATTTTACACTAGATGAGCACTGTAG 59.024 37.037 0.00 0.00 0.00 2.74
713 714 3.791973 ACACTAGATGAGCACTGTAGC 57.208 47.619 0.00 0.00 0.00 3.58
714 715 3.092301 ACACTAGATGAGCACTGTAGCA 58.908 45.455 0.00 0.00 36.85 3.49
715 716 3.703556 ACACTAGATGAGCACTGTAGCAT 59.296 43.478 0.00 0.00 36.85 3.79
716 717 4.202101 ACACTAGATGAGCACTGTAGCATC 60.202 45.833 0.00 0.00 37.88 3.91
717 718 2.505628 AGATGAGCACTGTAGCATCG 57.494 50.000 0.00 0.00 41.40 3.84
718 719 1.753649 AGATGAGCACTGTAGCATCGT 59.246 47.619 0.00 4.70 41.40 3.73
719 720 2.952310 AGATGAGCACTGTAGCATCGTA 59.048 45.455 0.00 0.00 41.40 3.43
720 721 3.381590 AGATGAGCACTGTAGCATCGTAA 59.618 43.478 0.00 0.00 41.40 3.18
721 722 2.876091 TGAGCACTGTAGCATCGTAAC 58.124 47.619 5.32 0.00 36.85 2.50
722 723 2.492088 TGAGCACTGTAGCATCGTAACT 59.508 45.455 5.32 0.00 36.85 2.24
723 724 3.056821 TGAGCACTGTAGCATCGTAACTT 60.057 43.478 5.32 0.00 36.85 2.66
724 725 3.512680 AGCACTGTAGCATCGTAACTTC 58.487 45.455 5.32 0.00 36.85 3.01
725 726 3.056821 AGCACTGTAGCATCGTAACTTCA 60.057 43.478 5.32 0.00 36.85 3.02
726 727 3.060895 GCACTGTAGCATCGTAACTTCAC 59.939 47.826 0.00 0.00 0.00 3.18
727 728 4.486090 CACTGTAGCATCGTAACTTCACT 58.514 43.478 0.00 0.00 0.00 3.41
728 729 4.923871 CACTGTAGCATCGTAACTTCACTT 59.076 41.667 0.00 0.00 0.00 3.16
729 730 5.061064 CACTGTAGCATCGTAACTTCACTTC 59.939 44.000 0.00 0.00 0.00 3.01
730 731 5.047943 ACTGTAGCATCGTAACTTCACTTCT 60.048 40.000 0.00 0.00 0.00 2.85
731 732 6.150641 ACTGTAGCATCGTAACTTCACTTCTA 59.849 38.462 0.00 0.00 0.00 2.10
732 733 6.916440 TGTAGCATCGTAACTTCACTTCTAA 58.084 36.000 0.00 0.00 0.00 2.10
733 734 7.544622 TGTAGCATCGTAACTTCACTTCTAAT 58.455 34.615 0.00 0.00 0.00 1.73
734 735 8.033038 TGTAGCATCGTAACTTCACTTCTAATT 58.967 33.333 0.00 0.00 0.00 1.40
735 736 7.907214 AGCATCGTAACTTCACTTCTAATTT 57.093 32.000 0.00 0.00 0.00 1.82
736 737 8.997621 AGCATCGTAACTTCACTTCTAATTTA 57.002 30.769 0.00 0.00 0.00 1.40
737 738 9.088512 AGCATCGTAACTTCACTTCTAATTTAG 57.911 33.333 0.00 0.00 0.00 1.85
738 739 9.084164 GCATCGTAACTTCACTTCTAATTTAGA 57.916 33.333 1.90 1.90 0.00 2.10
745 746 8.879342 ACTTCACTTCTAATTTAGATGATCCG 57.121 34.615 20.32 10.64 34.22 4.18
746 747 7.928706 ACTTCACTTCTAATTTAGATGATCCGG 59.071 37.037 20.32 0.00 34.22 5.14
747 748 6.223852 TCACTTCTAATTTAGATGATCCGGC 58.776 40.000 20.32 0.00 34.22 6.13
748 749 6.042093 TCACTTCTAATTTAGATGATCCGGCT 59.958 38.462 20.32 0.00 34.22 5.52
782 783 0.179119 CGTTTCCTCCGCCGATAACT 60.179 55.000 0.00 0.00 0.00 2.24
924 925 1.094785 GTACGACGTACCAGGCCTTA 58.905 55.000 24.41 0.00 33.38 2.69
1005 1012 3.120105 CATGCAGCAGCCATGGAG 58.880 61.111 18.40 8.23 41.13 3.86
1054 1061 2.932234 CGGTTGCTCGTGTCCCTCT 61.932 63.158 0.00 0.00 0.00 3.69
1058 1065 0.832135 TTGCTCGTGTCCCTCTTCCT 60.832 55.000 0.00 0.00 0.00 3.36
1059 1066 1.251527 TGCTCGTGTCCCTCTTCCTC 61.252 60.000 0.00 0.00 0.00 3.71
1060 1067 1.803943 CTCGTGTCCCTCTTCCTCG 59.196 63.158 0.00 0.00 0.00 4.63
1394 1413 1.394917 CTACTACGGCAACTACGACGT 59.605 52.381 5.52 5.52 42.71 4.34
1478 1497 2.279186 CGCGGCCGATGACATGTA 60.279 61.111 33.48 0.00 36.29 2.29
1479 1498 2.585869 CGCGGCCGATGACATGTAC 61.586 63.158 33.48 5.54 36.29 2.90
1560 1582 5.403466 GGCAGACTTAACAATTTGAGCTTTG 59.597 40.000 2.79 0.00 0.00 2.77
1577 1603 3.734902 GCTTTGTTGAGTGAACTGGTTGG 60.735 47.826 0.00 0.00 35.37 3.77
1625 1661 1.004277 GTGTGCCTGGTGGAAATAGGA 59.996 52.381 0.00 0.00 33.33 2.94
1722 1758 3.485431 CGCTGCTCCTGCTCAACG 61.485 66.667 0.00 0.00 40.48 4.10
1830 1873 6.091305 CCGGTGATAACTACTGATGCATATTG 59.909 42.308 0.00 0.00 0.00 1.90
1859 1906 3.310774 CCTGCCGATTACTTGATGTGAAG 59.689 47.826 0.00 0.00 0.00 3.02
1973 2020 8.150296 ACATTTTAAAATAGGCTTTGCAGAGTT 58.850 29.630 12.98 0.00 0.00 3.01
2029 2082 3.066645 GACACCGCGTATGCACACG 62.067 63.158 14.35 14.35 44.71 4.49
2135 2188 5.163581 ACCTGCAAAGCTCATATGATCAAAC 60.164 40.000 5.72 0.00 0.00 2.93
2153 2206 9.382275 TGATCAAACGATCAATCATCTTAAGAA 57.618 29.630 9.71 0.00 44.94 2.52
2269 2353 4.054359 AGTCCCAGAGAGACTAACATGT 57.946 45.455 0.00 0.00 42.76 3.21
2324 2408 0.251297 CCATTGACCCCACAGCTTGA 60.251 55.000 0.00 0.00 0.00 3.02
2424 2509 0.537653 GACACCTGGCCTTCTCTACC 59.462 60.000 3.32 0.00 0.00 3.18
2440 2525 3.505386 TCTACCACCAAACCAAATGCAT 58.495 40.909 0.00 0.00 0.00 3.96
2513 2607 1.230635 CCTGGAGTTTCAGGCACACG 61.231 60.000 0.00 0.00 46.47 4.49
2645 2739 1.073177 GTGGACCAACATAACGACGG 58.927 55.000 0.00 0.00 0.00 4.79
2813 2907 1.189752 CCTCCTGCTGCTCTACTTCA 58.810 55.000 0.00 0.00 0.00 3.02
4994 5189 7.961351 TCCTTGATACAAATTGTGTCCAAATT 58.039 30.769 17.95 0.00 41.98 1.82
4995 5190 9.083422 TCCTTGATACAAATTGTGTCCAAATTA 57.917 29.630 17.95 0.00 41.98 1.40
5096 5292 0.246086 GCTCTGTCACAGGAGAGGTG 59.754 60.000 4.57 0.00 36.91 4.00
5175 5371 4.112634 CCATGGTTCGTATGACTGTACAG 58.887 47.826 21.44 21.44 0.00 2.74
5176 5372 4.381612 CCATGGTTCGTATGACTGTACAGT 60.382 45.833 28.27 28.27 45.84 3.55
5177 5373 4.168922 TGGTTCGTATGACTGTACAGTG 57.831 45.455 32.51 17.50 42.66 3.66
5178 5374 3.570975 TGGTTCGTATGACTGTACAGTGT 59.429 43.478 32.51 21.60 42.66 3.55
5179 5375 4.761227 TGGTTCGTATGACTGTACAGTGTA 59.239 41.667 32.51 20.60 42.66 2.90
5180 5376 5.091431 GGTTCGTATGACTGTACAGTGTAC 58.909 45.833 32.51 27.69 42.66 2.90
5181 5377 5.335113 GGTTCGTATGACTGTACAGTGTACA 60.335 44.000 32.51 29.44 42.66 2.90
5614 5812 4.822026 CTTTGGAGTTGTACTACTGGAGG 58.178 47.826 14.84 0.00 27.92 4.30
5744 5942 2.307098 ACTCAAAGATGGGAAGGGAGTG 59.693 50.000 0.00 0.00 33.28 3.51
5829 6027 2.223377 GGAACGACCAACAATGACAGAC 59.777 50.000 0.00 0.00 38.79 3.51
5854 6052 1.382692 GGCTGAGCTCAAGGAATGCC 61.383 60.000 22.17 22.17 0.00 4.40
6049 6247 1.457346 GGCACCAAGATGAGACCAAG 58.543 55.000 0.00 0.00 0.00 3.61
6128 6326 9.162764 GCATCAGAAACTTTAGTCCTGTATTTA 57.837 33.333 10.19 0.00 0.00 1.40
6758 6959 8.587608 AGTTTGCATTTTATGGAGAAGATGAAA 58.412 29.630 0.00 0.00 0.00 2.69
7026 7227 1.074926 AACCACCACCCATTTGGCA 60.075 52.632 0.00 0.00 40.77 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 9.658799 TCAAAAGGTTCAACAACAAATAATTCA 57.341 25.926 0.00 0.00 33.70 2.57
47 48 9.883142 AGAAATCAAAAGGTTCAACAACAAATA 57.117 25.926 0.00 0.00 33.70 1.40
48 49 8.791327 AGAAATCAAAAGGTTCAACAACAAAT 57.209 26.923 0.00 0.00 33.70 2.32
49 50 9.883142 ATAGAAATCAAAAGGTTCAACAACAAA 57.117 25.926 0.00 0.00 33.70 2.83
50 51 9.883142 AATAGAAATCAAAAGGTTCAACAACAA 57.117 25.926 0.00 0.00 33.70 2.83
51 52 9.311916 CAATAGAAATCAAAAGGTTCAACAACA 57.688 29.630 0.00 0.00 33.70 3.33
52 53 9.528018 TCAATAGAAATCAAAAGGTTCAACAAC 57.472 29.630 0.00 0.00 0.00 3.32
59 60 9.423061 CCGAAAATCAATAGAAATCAAAAGGTT 57.577 29.630 0.00 0.00 0.00 3.50
60 61 8.585018 ACCGAAAATCAATAGAAATCAAAAGGT 58.415 29.630 0.00 0.00 0.00 3.50
61 62 8.863049 CACCGAAAATCAATAGAAATCAAAAGG 58.137 33.333 0.00 0.00 0.00 3.11
62 63 9.624697 TCACCGAAAATCAATAGAAATCAAAAG 57.375 29.630 0.00 0.00 0.00 2.27
64 65 9.571810 CATCACCGAAAATCAATAGAAATCAAA 57.428 29.630 0.00 0.00 0.00 2.69
65 66 8.955388 TCATCACCGAAAATCAATAGAAATCAA 58.045 29.630 0.00 0.00 0.00 2.57
66 67 8.504812 TCATCACCGAAAATCAATAGAAATCA 57.495 30.769 0.00 0.00 0.00 2.57
67 68 9.226345 GTTCATCACCGAAAATCAATAGAAATC 57.774 33.333 0.00 0.00 0.00 2.17
68 69 8.960591 AGTTCATCACCGAAAATCAATAGAAAT 58.039 29.630 0.00 0.00 0.00 2.17
69 70 8.335532 AGTTCATCACCGAAAATCAATAGAAA 57.664 30.769 0.00 0.00 0.00 2.52
70 71 7.921786 AGTTCATCACCGAAAATCAATAGAA 57.078 32.000 0.00 0.00 0.00 2.10
71 72 9.045223 CATAGTTCATCACCGAAAATCAATAGA 57.955 33.333 0.00 0.00 0.00 1.98
72 73 8.830580 ACATAGTTCATCACCGAAAATCAATAG 58.169 33.333 0.00 0.00 0.00 1.73
73 74 8.611757 CACATAGTTCATCACCGAAAATCAATA 58.388 33.333 0.00 0.00 0.00 1.90
74 75 7.336679 TCACATAGTTCATCACCGAAAATCAAT 59.663 33.333 0.00 0.00 0.00 2.57
75 76 6.652900 TCACATAGTTCATCACCGAAAATCAA 59.347 34.615 0.00 0.00 0.00 2.57
76 77 6.169800 TCACATAGTTCATCACCGAAAATCA 58.830 36.000 0.00 0.00 0.00 2.57
77 78 6.662414 TCACATAGTTCATCACCGAAAATC 57.338 37.500 0.00 0.00 0.00 2.17
78 79 8.731275 TTATCACATAGTTCATCACCGAAAAT 57.269 30.769 0.00 0.00 0.00 1.82
79 80 8.554835 TTTATCACATAGTTCATCACCGAAAA 57.445 30.769 0.00 0.00 0.00 2.29
80 81 8.554835 TTTTATCACATAGTTCATCACCGAAA 57.445 30.769 0.00 0.00 0.00 3.46
81 82 8.554835 TTTTTATCACATAGTTCATCACCGAA 57.445 30.769 0.00 0.00 0.00 4.30
104 105 6.904543 GCGCAAATTCAACACAAGTAATTTTT 59.095 30.769 0.30 0.00 31.05 1.94
105 106 6.418141 GCGCAAATTCAACACAAGTAATTTT 58.582 32.000 0.30 0.00 31.05 1.82
106 107 5.050431 GGCGCAAATTCAACACAAGTAATTT 60.050 36.000 10.83 0.00 33.07 1.82
107 108 4.447389 GGCGCAAATTCAACACAAGTAATT 59.553 37.500 10.83 0.00 0.00 1.40
108 109 3.987220 GGCGCAAATTCAACACAAGTAAT 59.013 39.130 10.83 0.00 0.00 1.89
109 110 3.376540 GGCGCAAATTCAACACAAGTAA 58.623 40.909 10.83 0.00 0.00 2.24
110 111 2.603412 CGGCGCAAATTCAACACAAGTA 60.603 45.455 10.83 0.00 0.00 2.24
111 112 1.851658 GGCGCAAATTCAACACAAGT 58.148 45.000 10.83 0.00 0.00 3.16
112 113 0.777631 CGGCGCAAATTCAACACAAG 59.222 50.000 10.83 0.00 0.00 3.16
113 114 0.382158 TCGGCGCAAATTCAACACAA 59.618 45.000 10.83 0.00 0.00 3.33
114 115 0.382158 TTCGGCGCAAATTCAACACA 59.618 45.000 10.83 0.00 0.00 3.72
115 116 0.775861 GTTCGGCGCAAATTCAACAC 59.224 50.000 10.83 0.00 0.00 3.32
116 117 0.318275 GGTTCGGCGCAAATTCAACA 60.318 50.000 10.83 0.00 0.00 3.33
117 118 0.318275 TGGTTCGGCGCAAATTCAAC 60.318 50.000 10.83 0.00 0.00 3.18
118 119 0.318275 GTGGTTCGGCGCAAATTCAA 60.318 50.000 10.83 0.00 0.00 2.69
119 120 1.284408 GTGGTTCGGCGCAAATTCA 59.716 52.632 10.83 3.42 0.00 2.57
120 121 1.795962 CGTGGTTCGGCGCAAATTC 60.796 57.895 10.83 0.77 35.71 2.17
121 122 2.254051 CGTGGTTCGGCGCAAATT 59.746 55.556 10.83 0.00 35.71 1.82
130 131 1.418342 CCTGTATTCGCCGTGGTTCG 61.418 60.000 0.00 0.00 39.52 3.95
131 132 1.702491 GCCTGTATTCGCCGTGGTTC 61.702 60.000 0.00 0.00 0.00 3.62
132 133 1.743995 GCCTGTATTCGCCGTGGTT 60.744 57.895 0.00 0.00 0.00 3.67
133 134 2.125269 GCCTGTATTCGCCGTGGT 60.125 61.111 0.00 0.00 0.00 4.16
134 135 2.895372 GGCCTGTATTCGCCGTGG 60.895 66.667 0.00 0.00 34.94 4.94
138 139 0.307760 CAAATCGGCCTGTATTCGCC 59.692 55.000 0.00 0.00 42.05 5.54
139 140 0.317020 GCAAATCGGCCTGTATTCGC 60.317 55.000 0.00 0.00 0.00 4.70
140 141 0.042188 CGCAAATCGGCCTGTATTCG 60.042 55.000 0.00 0.00 33.78 3.34
141 142 0.317020 GCGCAAATCGGCCTGTATTC 60.317 55.000 0.30 0.00 38.94 1.75
142 143 1.727467 GCGCAAATCGGCCTGTATT 59.273 52.632 0.30 0.00 38.94 1.89
143 144 3.420943 GCGCAAATCGGCCTGTAT 58.579 55.556 0.30 0.00 38.94 2.29
150 151 0.865111 TTGATATCGGCGCAAATCGG 59.135 50.000 10.83 0.00 38.94 4.18
151 152 1.722751 GCTTGATATCGGCGCAAATCG 60.723 52.381 10.83 2.99 42.12 3.34
152 153 1.532868 AGCTTGATATCGGCGCAAATC 59.467 47.619 10.83 6.65 0.00 2.17
153 154 1.265095 CAGCTTGATATCGGCGCAAAT 59.735 47.619 10.83 4.09 0.00 2.32
154 155 0.657312 CAGCTTGATATCGGCGCAAA 59.343 50.000 10.83 0.00 0.00 3.68
155 156 0.179086 TCAGCTTGATATCGGCGCAA 60.179 50.000 10.83 0.00 0.00 4.85
156 157 0.033920 ATCAGCTTGATATCGGCGCA 59.966 50.000 10.83 0.00 34.88 6.09
157 158 1.151668 AATCAGCTTGATATCGGCGC 58.848 50.000 0.00 0.00 35.76 6.53
158 159 3.885484 AAAATCAGCTTGATATCGGCG 57.115 42.857 0.00 0.00 35.76 6.46
176 177 4.417426 TTTGGCCCAATTTCGGTAAAAA 57.583 36.364 0.00 0.00 0.00 1.94
177 178 4.417426 TTTTGGCCCAATTTCGGTAAAA 57.583 36.364 0.00 0.00 0.00 1.52
178 179 4.381411 CTTTTTGGCCCAATTTCGGTAAA 58.619 39.130 0.00 0.00 0.00 2.01
179 180 3.804063 GCTTTTTGGCCCAATTTCGGTAA 60.804 43.478 0.00 0.00 0.00 2.85
180 181 2.289133 GCTTTTTGGCCCAATTTCGGTA 60.289 45.455 0.00 0.00 0.00 4.02
181 182 1.542328 GCTTTTTGGCCCAATTTCGGT 60.542 47.619 0.00 0.00 0.00 4.69
182 183 1.155889 GCTTTTTGGCCCAATTTCGG 58.844 50.000 0.00 0.00 0.00 4.30
183 184 0.789601 CGCTTTTTGGCCCAATTTCG 59.210 50.000 0.00 0.00 0.00 3.46
184 185 2.068519 CTCGCTTTTTGGCCCAATTTC 58.931 47.619 0.00 0.00 0.00 2.17
185 186 1.877680 GCTCGCTTTTTGGCCCAATTT 60.878 47.619 0.00 0.00 0.00 1.82
186 187 0.320683 GCTCGCTTTTTGGCCCAATT 60.321 50.000 0.00 0.00 0.00 2.32
187 188 1.293179 GCTCGCTTTTTGGCCCAAT 59.707 52.632 0.00 0.00 0.00 3.16
188 189 2.733945 GCTCGCTTTTTGGCCCAA 59.266 55.556 0.00 0.00 0.00 4.12
189 190 3.669344 CGCTCGCTTTTTGGCCCA 61.669 61.111 0.00 0.00 0.00 5.36
216 217 3.248602 GGCGTCGATATCAGCTCATTTTT 59.751 43.478 3.12 0.00 0.00 1.94
217 218 2.802816 GGCGTCGATATCAGCTCATTTT 59.197 45.455 3.12 0.00 0.00 1.82
218 219 2.036475 AGGCGTCGATATCAGCTCATTT 59.964 45.455 3.12 0.00 0.00 2.32
219 220 1.615883 AGGCGTCGATATCAGCTCATT 59.384 47.619 3.12 0.00 0.00 2.57
220 221 1.252175 AGGCGTCGATATCAGCTCAT 58.748 50.000 3.12 0.00 0.00 2.90
221 222 1.807142 CTAGGCGTCGATATCAGCTCA 59.193 52.381 3.12 0.00 0.00 4.26
222 223 1.131504 CCTAGGCGTCGATATCAGCTC 59.868 57.143 0.00 0.59 0.00 4.09
223 224 1.169577 CCTAGGCGTCGATATCAGCT 58.830 55.000 0.00 0.00 0.00 4.24
224 225 0.171455 CCCTAGGCGTCGATATCAGC 59.829 60.000 2.05 5.01 0.00 4.26
225 226 0.811915 CCCCTAGGCGTCGATATCAG 59.188 60.000 2.05 0.00 0.00 2.90
226 227 0.611062 CCCCCTAGGCGTCGATATCA 60.611 60.000 2.05 0.00 0.00 2.15
227 228 2.190756 CCCCCTAGGCGTCGATATC 58.809 63.158 2.05 0.00 0.00 1.63
228 229 4.436368 CCCCCTAGGCGTCGATAT 57.564 61.111 2.05 0.00 0.00 1.63
249 250 3.822192 GATTGGGTTTCCGGCCGC 61.822 66.667 22.85 5.63 35.24 6.53
250 251 3.505184 CGATTGGGTTTCCGGCCG 61.505 66.667 21.04 21.04 35.24 6.13
251 252 3.822192 GCGATTGGGTTTCCGGCC 61.822 66.667 0.00 0.00 35.24 6.13
252 253 3.822192 GGCGATTGGGTTTCCGGC 61.822 66.667 0.00 0.00 40.15 6.13
253 254 3.138128 GGGCGATTGGGTTTCCGG 61.138 66.667 0.00 0.00 35.24 5.14
254 255 3.138128 GGGGCGATTGGGTTTCCG 61.138 66.667 0.00 0.00 35.24 4.30
255 256 2.758327 GGGGGCGATTGGGTTTCC 60.758 66.667 0.00 0.00 0.00 3.13
269 270 3.355203 CTGGCGCAAAAATCGGGGG 62.355 63.158 10.83 0.00 0.00 5.40
270 271 2.181525 CTGGCGCAAAAATCGGGG 59.818 61.111 10.83 0.00 0.00 5.73
271 272 2.506881 GCTGGCGCAAAAATCGGG 60.507 61.111 10.83 0.00 35.78 5.14
272 273 1.514873 GAGCTGGCGCAAAAATCGG 60.515 57.895 10.83 0.00 39.10 4.18
273 274 1.864750 CGAGCTGGCGCAAAAATCG 60.865 57.895 10.83 8.34 39.10 3.34
274 275 0.794605 GACGAGCTGGCGCAAAAATC 60.795 55.000 10.83 0.00 39.10 2.17
275 276 1.210155 GACGAGCTGGCGCAAAAAT 59.790 52.632 10.83 0.00 39.10 1.82
276 277 2.637025 GACGAGCTGGCGCAAAAA 59.363 55.556 10.83 0.00 39.10 1.94
277 278 3.353836 GGACGAGCTGGCGCAAAA 61.354 61.111 10.83 0.00 39.10 2.44
291 292 0.446616 GAAAATCGTCGCTTGGGGAC 59.553 55.000 4.93 4.93 41.19 4.46
292 293 0.035598 TGAAAATCGTCGCTTGGGGA 59.964 50.000 0.00 0.00 0.00 4.81
293 294 0.878416 TTGAAAATCGTCGCTTGGGG 59.122 50.000 0.00 0.00 0.00 4.96
294 295 1.729149 GCTTGAAAATCGTCGCTTGGG 60.729 52.381 0.00 0.00 0.00 4.12
295 296 1.606606 GCTTGAAAATCGTCGCTTGG 58.393 50.000 0.00 0.00 0.00 3.61
296 297 1.197721 AGGCTTGAAAATCGTCGCTTG 59.802 47.619 0.00 0.00 0.00 4.01
297 298 1.464997 GAGGCTTGAAAATCGTCGCTT 59.535 47.619 0.00 0.00 0.00 4.68
298 299 1.079503 GAGGCTTGAAAATCGTCGCT 58.920 50.000 0.00 0.00 0.00 4.93
299 300 0.796312 TGAGGCTTGAAAATCGTCGC 59.204 50.000 0.00 0.00 30.19 5.19
300 301 2.416547 ACATGAGGCTTGAAAATCGTCG 59.583 45.455 0.00 0.00 30.19 5.12
301 302 3.426695 CCACATGAGGCTTGAAAATCGTC 60.427 47.826 0.00 0.00 0.00 4.20
302 303 2.489329 CCACATGAGGCTTGAAAATCGT 59.511 45.455 0.00 0.00 0.00 3.73
303 304 2.159338 CCCACATGAGGCTTGAAAATCG 60.159 50.000 3.22 0.00 0.00 3.34
304 305 2.167075 CCCCACATGAGGCTTGAAAATC 59.833 50.000 3.22 0.00 0.00 2.17
305 306 2.181975 CCCCACATGAGGCTTGAAAAT 58.818 47.619 3.22 0.00 0.00 1.82
306 307 1.631405 CCCCACATGAGGCTTGAAAA 58.369 50.000 3.22 0.00 0.00 2.29
307 308 0.251742 CCCCCACATGAGGCTTGAAA 60.252 55.000 3.22 0.00 0.00 2.69
308 309 1.383799 CCCCCACATGAGGCTTGAA 59.616 57.895 3.22 0.00 0.00 2.69
309 310 3.089838 CCCCCACATGAGGCTTGA 58.910 61.111 3.22 0.00 0.00 3.02
310 311 2.757099 GCCCCCACATGAGGCTTG 60.757 66.667 3.22 0.00 43.62 4.01
311 312 4.066139 GGCCCCCACATGAGGCTT 62.066 66.667 16.37 0.00 46.31 4.35
313 314 4.380945 TTGGCCCCCACATGAGGC 62.381 66.667 0.00 7.85 46.37 4.70
314 315 2.362889 GTTGGCCCCCACATGAGG 60.363 66.667 0.00 0.00 30.78 3.86
315 316 2.751436 CGTTGGCCCCCACATGAG 60.751 66.667 0.00 0.00 30.78 2.90
316 317 4.358841 CCGTTGGCCCCCACATGA 62.359 66.667 0.00 0.00 30.78 3.07
325 326 4.624187 TAGATCATCTCTAGCCGTTGGCC 61.624 52.174 3.78 0.00 41.73 5.36
326 327 2.558795 TAGATCATCTCTAGCCGTTGGC 59.441 50.000 0.00 0.00 41.38 4.52
327 328 4.279671 ACTTAGATCATCTCTAGCCGTTGG 59.720 45.833 0.00 0.00 37.75 3.77
328 329 5.446143 ACTTAGATCATCTCTAGCCGTTG 57.554 43.478 0.00 0.00 37.75 4.10
329 330 6.300703 ACTACTTAGATCATCTCTAGCCGTT 58.699 40.000 0.00 0.00 37.75 4.44
330 331 5.871834 ACTACTTAGATCATCTCTAGCCGT 58.128 41.667 0.00 0.00 37.75 5.68
331 332 7.101054 AGTACTACTTAGATCATCTCTAGCCG 58.899 42.308 0.00 0.00 37.75 5.52
332 333 8.319146 AGAGTACTACTTAGATCATCTCTAGCC 58.681 40.741 0.00 0.00 37.75 3.93
333 334 9.720769 AAGAGTACTACTTAGATCATCTCTAGC 57.279 37.037 0.00 0.00 37.75 3.42
352 353 8.655651 ATTACCGAGTACTACTACAAGAGTAC 57.344 38.462 0.00 4.40 45.57 2.73
353 354 7.649705 CGATTACCGAGTACTACTACAAGAGTA 59.350 40.741 0.00 0.00 39.06 2.59
354 355 6.478344 CGATTACCGAGTACTACTACAAGAGT 59.522 42.308 0.00 0.00 40.66 3.24
355 356 6.073873 CCGATTACCGAGTACTACTACAAGAG 60.074 46.154 0.00 0.00 41.76 2.85
356 357 5.755375 CCGATTACCGAGTACTACTACAAGA 59.245 44.000 0.00 0.00 41.76 3.02
357 358 5.559799 GCCGATTACCGAGTACTACTACAAG 60.560 48.000 0.00 0.00 41.76 3.16
358 359 4.273480 GCCGATTACCGAGTACTACTACAA 59.727 45.833 0.00 0.00 41.76 2.41
359 360 3.809832 GCCGATTACCGAGTACTACTACA 59.190 47.826 0.00 0.00 41.76 2.74
360 361 3.187432 GGCCGATTACCGAGTACTACTAC 59.813 52.174 0.00 0.00 41.76 2.73
361 362 3.403038 GGCCGATTACCGAGTACTACTA 58.597 50.000 0.00 0.00 41.76 1.82
362 363 2.225467 GGCCGATTACCGAGTACTACT 58.775 52.381 0.00 0.00 41.76 2.57
363 364 1.268079 GGGCCGATTACCGAGTACTAC 59.732 57.143 0.00 0.00 41.76 2.73
364 365 1.143684 AGGGCCGATTACCGAGTACTA 59.856 52.381 0.00 0.00 41.76 1.82
365 366 0.106318 AGGGCCGATTACCGAGTACT 60.106 55.000 0.00 0.00 41.76 2.73
366 367 0.313357 GAGGGCCGATTACCGAGTAC 59.687 60.000 0.00 0.00 41.76 2.73
367 368 0.184451 AGAGGGCCGATTACCGAGTA 59.816 55.000 0.00 0.00 41.76 2.59
368 369 0.686769 AAGAGGGCCGATTACCGAGT 60.687 55.000 0.00 0.00 41.76 4.18
369 370 0.032267 GAAGAGGGCCGATTACCGAG 59.968 60.000 0.00 0.00 41.76 4.63
370 371 0.396695 AGAAGAGGGCCGATTACCGA 60.397 55.000 0.00 0.00 41.76 4.69
371 372 1.325355 TAGAAGAGGGCCGATTACCG 58.675 55.000 0.00 0.00 38.18 4.02
372 373 4.040584 AGAATTAGAAGAGGGCCGATTACC 59.959 45.833 0.00 0.00 0.00 2.85
373 374 5.216614 AGAATTAGAAGAGGGCCGATTAC 57.783 43.478 0.00 0.00 0.00 1.89
374 375 5.888982 AAGAATTAGAAGAGGGCCGATTA 57.111 39.130 0.00 0.00 0.00 1.75
375 376 4.779993 AAGAATTAGAAGAGGGCCGATT 57.220 40.909 0.00 0.00 0.00 3.34
376 377 5.888982 TTAAGAATTAGAAGAGGGCCGAT 57.111 39.130 0.00 0.00 0.00 4.18
377 378 5.221661 GGATTAAGAATTAGAAGAGGGCCGA 60.222 44.000 0.00 0.00 0.00 5.54
378 379 4.998033 GGATTAAGAATTAGAAGAGGGCCG 59.002 45.833 0.00 0.00 0.00 6.13
379 380 5.317808 GGGATTAAGAATTAGAAGAGGGCC 58.682 45.833 0.00 0.00 0.00 5.80
380 381 4.998033 CGGGATTAAGAATTAGAAGAGGGC 59.002 45.833 0.00 0.00 0.00 5.19
381 382 6.176014 ACGGGATTAAGAATTAGAAGAGGG 57.824 41.667 0.00 0.00 0.00 4.30
382 383 8.368668 ACATACGGGATTAAGAATTAGAAGAGG 58.631 37.037 0.00 0.00 0.00 3.69
383 384 9.765795 AACATACGGGATTAAGAATTAGAAGAG 57.234 33.333 0.00 0.00 0.00 2.85
384 385 9.760077 GAACATACGGGATTAAGAATTAGAAGA 57.240 33.333 0.00 0.00 0.00 2.87
385 386 8.989980 GGAACATACGGGATTAAGAATTAGAAG 58.010 37.037 0.00 0.00 0.00 2.85
386 387 8.711170 AGGAACATACGGGATTAAGAATTAGAA 58.289 33.333 0.00 0.00 0.00 2.10
387 388 8.258850 AGGAACATACGGGATTAAGAATTAGA 57.741 34.615 0.00 0.00 0.00 2.10
388 389 8.904099 AAGGAACATACGGGATTAAGAATTAG 57.096 34.615 0.00 0.00 0.00 1.73
389 390 9.333724 GAAAGGAACATACGGGATTAAGAATTA 57.666 33.333 0.00 0.00 0.00 1.40
390 391 7.012044 CGAAAGGAACATACGGGATTAAGAATT 59.988 37.037 0.00 0.00 0.00 2.17
391 392 6.482308 CGAAAGGAACATACGGGATTAAGAAT 59.518 38.462 0.00 0.00 0.00 2.40
392 393 5.813672 CGAAAGGAACATACGGGATTAAGAA 59.186 40.000 0.00 0.00 0.00 2.52
393 394 5.353938 CGAAAGGAACATACGGGATTAAGA 58.646 41.667 0.00 0.00 0.00 2.10
394 395 4.025145 GCGAAAGGAACATACGGGATTAAG 60.025 45.833 0.00 0.00 0.00 1.85
395 396 3.872771 GCGAAAGGAACATACGGGATTAA 59.127 43.478 0.00 0.00 0.00 1.40
396 397 3.133362 AGCGAAAGGAACATACGGGATTA 59.867 43.478 0.00 0.00 0.00 1.75
397 398 2.093128 AGCGAAAGGAACATACGGGATT 60.093 45.455 0.00 0.00 0.00 3.01
398 399 1.485066 AGCGAAAGGAACATACGGGAT 59.515 47.619 0.00 0.00 0.00 3.85
399 400 0.899720 AGCGAAAGGAACATACGGGA 59.100 50.000 0.00 0.00 0.00 5.14
400 401 1.396996 CAAGCGAAAGGAACATACGGG 59.603 52.381 0.00 0.00 0.00 5.28
401 402 2.093783 GTCAAGCGAAAGGAACATACGG 59.906 50.000 0.00 0.00 0.00 4.02
402 403 2.993899 AGTCAAGCGAAAGGAACATACG 59.006 45.455 0.00 0.00 0.00 3.06
403 404 3.424962 GCAGTCAAGCGAAAGGAACATAC 60.425 47.826 0.00 0.00 0.00 2.39
404 405 2.742053 GCAGTCAAGCGAAAGGAACATA 59.258 45.455 0.00 0.00 0.00 2.29
405 406 1.537202 GCAGTCAAGCGAAAGGAACAT 59.463 47.619 0.00 0.00 0.00 2.71
406 407 0.944386 GCAGTCAAGCGAAAGGAACA 59.056 50.000 0.00 0.00 0.00 3.18
407 408 1.069636 CAGCAGTCAAGCGAAAGGAAC 60.070 52.381 0.00 0.00 40.15 3.62
408 409 1.229428 CAGCAGTCAAGCGAAAGGAA 58.771 50.000 0.00 0.00 40.15 3.36
409 410 1.230635 GCAGCAGTCAAGCGAAAGGA 61.231 55.000 0.00 0.00 40.15 3.36
410 411 1.208614 GCAGCAGTCAAGCGAAAGG 59.791 57.895 0.00 0.00 40.15 3.11
411 412 0.590195 AAGCAGCAGTCAAGCGAAAG 59.410 50.000 0.00 0.00 40.15 2.62
412 413 0.308684 CAAGCAGCAGTCAAGCGAAA 59.691 50.000 0.00 0.00 40.15 3.46
413 414 0.815213 ACAAGCAGCAGTCAAGCGAA 60.815 50.000 0.00 0.00 40.15 4.70
414 415 0.815213 AACAAGCAGCAGTCAAGCGA 60.815 50.000 0.00 0.00 40.15 4.93
415 416 0.029834 AAACAAGCAGCAGTCAAGCG 59.970 50.000 0.00 0.00 40.15 4.68
416 417 1.484356 CAAACAAGCAGCAGTCAAGC 58.516 50.000 0.00 0.00 0.00 4.01
417 418 1.484356 GCAAACAAGCAGCAGTCAAG 58.516 50.000 0.00 0.00 0.00 3.02
418 419 0.102844 GGCAAACAAGCAGCAGTCAA 59.897 50.000 0.00 0.00 35.83 3.18
419 420 1.036481 TGGCAAACAAGCAGCAGTCA 61.036 50.000 0.00 0.00 35.83 3.41
420 421 0.595825 GTGGCAAACAAGCAGCAGTC 60.596 55.000 0.00 0.00 35.83 3.51
421 422 1.039233 AGTGGCAAACAAGCAGCAGT 61.039 50.000 0.00 0.00 35.83 4.40
422 423 0.596600 CAGTGGCAAACAAGCAGCAG 60.597 55.000 0.00 0.00 35.83 4.24
423 424 1.438399 CAGTGGCAAACAAGCAGCA 59.562 52.632 0.00 0.00 35.83 4.41
424 425 1.952635 GCAGTGGCAAACAAGCAGC 60.953 57.895 0.00 0.00 40.72 5.25
425 426 1.659335 CGCAGTGGCAAACAAGCAG 60.659 57.895 0.00 0.00 41.24 4.24
426 427 1.454572 ATCGCAGTGGCAAACAAGCA 61.455 50.000 0.00 0.00 41.24 3.91
427 428 0.730494 GATCGCAGTGGCAAACAAGC 60.730 55.000 0.00 0.00 41.24 4.01
428 429 0.109597 GGATCGCAGTGGCAAACAAG 60.110 55.000 0.00 0.00 41.24 3.16
429 430 1.523154 GGGATCGCAGTGGCAAACAA 61.523 55.000 4.64 0.00 41.24 2.83
430 431 1.971167 GGGATCGCAGTGGCAAACA 60.971 57.895 4.64 0.00 41.24 2.83
431 432 1.675641 AGGGATCGCAGTGGCAAAC 60.676 57.895 12.83 0.00 41.24 2.93
432 433 1.675310 CAGGGATCGCAGTGGCAAA 60.675 57.895 12.83 0.00 41.24 3.68
433 434 2.046023 CAGGGATCGCAGTGGCAA 60.046 61.111 12.83 0.00 41.24 4.52
434 435 2.123248 TTTCAGGGATCGCAGTGGCA 62.123 55.000 12.83 0.00 41.24 4.92
435 436 0.749454 ATTTCAGGGATCGCAGTGGC 60.749 55.000 12.83 0.00 0.00 5.01
436 437 1.672881 GAATTTCAGGGATCGCAGTGG 59.327 52.381 12.83 0.00 0.00 4.00
437 438 2.611292 GAGAATTTCAGGGATCGCAGTG 59.389 50.000 12.83 2.61 0.00 3.66
438 439 2.739932 CGAGAATTTCAGGGATCGCAGT 60.740 50.000 12.83 0.00 0.00 4.40
439 440 1.863454 CGAGAATTTCAGGGATCGCAG 59.137 52.381 12.83 4.00 0.00 5.18
440 441 1.480545 TCGAGAATTTCAGGGATCGCA 59.519 47.619 12.83 0.00 0.00 5.10
441 442 2.225068 TCGAGAATTTCAGGGATCGC 57.775 50.000 0.54 0.54 0.00 4.58
442 443 3.309954 GGTTTCGAGAATTTCAGGGATCG 59.690 47.826 0.00 0.00 0.00 3.69
443 444 4.261801 TGGTTTCGAGAATTTCAGGGATC 58.738 43.478 0.00 0.00 0.00 3.36
444 445 4.019321 TCTGGTTTCGAGAATTTCAGGGAT 60.019 41.667 0.00 0.00 0.00 3.85
445 446 3.326588 TCTGGTTTCGAGAATTTCAGGGA 59.673 43.478 0.00 0.00 0.00 4.20
446 447 3.674997 TCTGGTTTCGAGAATTTCAGGG 58.325 45.455 0.00 0.00 0.00 4.45
447 448 5.181748 AGATCTGGTTTCGAGAATTTCAGG 58.818 41.667 0.00 0.00 0.00 3.86
448 449 7.261325 TCTAGATCTGGTTTCGAGAATTTCAG 58.739 38.462 5.18 0.00 0.00 3.02
449 450 7.122799 TCTCTAGATCTGGTTTCGAGAATTTCA 59.877 37.037 5.18 0.00 0.00 2.69
450 451 7.484975 TCTCTAGATCTGGTTTCGAGAATTTC 58.515 38.462 5.18 0.00 0.00 2.17
451 452 7.411486 TCTCTAGATCTGGTTTCGAGAATTT 57.589 36.000 5.18 0.00 0.00 1.82
452 453 7.123547 ACTTCTCTAGATCTGGTTTCGAGAATT 59.876 37.037 5.18 0.00 36.02 2.17
453 454 6.605594 ACTTCTCTAGATCTGGTTTCGAGAAT 59.394 38.462 5.18 0.00 36.02 2.40
454 455 5.946972 ACTTCTCTAGATCTGGTTTCGAGAA 59.053 40.000 5.18 6.27 35.49 2.87
455 456 5.502079 ACTTCTCTAGATCTGGTTTCGAGA 58.498 41.667 5.18 0.00 0.00 4.04
456 457 5.828299 ACTTCTCTAGATCTGGTTTCGAG 57.172 43.478 5.18 0.00 0.00 4.04
457 458 7.883391 ATAACTTCTCTAGATCTGGTTTCGA 57.117 36.000 5.18 0.00 0.00 3.71
458 459 8.842280 ACTATAACTTCTCTAGATCTGGTTTCG 58.158 37.037 5.18 0.00 0.00 3.46
461 462 9.577222 GGTACTATAACTTCTCTAGATCTGGTT 57.423 37.037 5.18 3.85 0.00 3.67
462 463 8.165397 GGGTACTATAACTTCTCTAGATCTGGT 58.835 40.741 5.18 0.00 0.00 4.00
463 464 8.387813 AGGGTACTATAACTTCTCTAGATCTGG 58.612 40.741 5.18 1.65 0.00 3.86
577 578 8.855110 TCACCATCAACTTGTTTGTATGTAATT 58.145 29.630 0.00 0.00 36.49 1.40
578 579 8.402798 TCACCATCAACTTGTTTGTATGTAAT 57.597 30.769 0.00 0.00 36.49 1.89
579 580 7.717436 TCTCACCATCAACTTGTTTGTATGTAA 59.283 33.333 0.00 0.00 36.49 2.41
580 581 7.220740 TCTCACCATCAACTTGTTTGTATGTA 58.779 34.615 0.00 0.00 36.49 2.29
581 582 6.061441 TCTCACCATCAACTTGTTTGTATGT 58.939 36.000 0.00 0.00 36.49 2.29
582 583 6.558771 TCTCACCATCAACTTGTTTGTATG 57.441 37.500 0.00 0.00 36.49 2.39
583 584 8.862325 TTATCTCACCATCAACTTGTTTGTAT 57.138 30.769 0.00 0.00 36.49 2.29
584 585 8.684386 TTTATCTCACCATCAACTTGTTTGTA 57.316 30.769 0.00 0.00 36.49 2.41
585 586 7.581213 TTTATCTCACCATCAACTTGTTTGT 57.419 32.000 0.00 0.00 36.49 2.83
586 587 9.480053 AATTTTATCTCACCATCAACTTGTTTG 57.520 29.630 0.00 0.00 36.42 2.93
680 681 9.283768 TGCTCATCTAGTGTAAAATGAAAAAGA 57.716 29.630 0.00 0.00 0.00 2.52
681 682 9.334693 GTGCTCATCTAGTGTAAAATGAAAAAG 57.665 33.333 0.00 0.00 0.00 2.27
682 683 9.066892 AGTGCTCATCTAGTGTAAAATGAAAAA 57.933 29.630 0.00 0.00 0.00 1.94
683 684 8.506437 CAGTGCTCATCTAGTGTAAAATGAAAA 58.494 33.333 0.00 0.00 0.00 2.29
684 685 7.661437 ACAGTGCTCATCTAGTGTAAAATGAAA 59.339 33.333 0.00 0.00 0.00 2.69
685 686 7.161404 ACAGTGCTCATCTAGTGTAAAATGAA 58.839 34.615 0.00 0.00 0.00 2.57
686 687 6.701340 ACAGTGCTCATCTAGTGTAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
687 688 6.974932 ACAGTGCTCATCTAGTGTAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
688 689 6.758886 GCTACAGTGCTCATCTAGTGTAAAAT 59.241 38.462 0.00 0.00 33.64 1.82
689 690 6.100004 GCTACAGTGCTCATCTAGTGTAAAA 58.900 40.000 0.00 0.00 33.64 1.52
690 691 5.185056 TGCTACAGTGCTCATCTAGTGTAAA 59.815 40.000 0.00 0.00 33.64 2.01
691 692 4.705023 TGCTACAGTGCTCATCTAGTGTAA 59.295 41.667 0.00 0.00 33.64 2.41
692 693 4.270008 TGCTACAGTGCTCATCTAGTGTA 58.730 43.478 0.00 0.00 32.96 2.90
693 694 3.092301 TGCTACAGTGCTCATCTAGTGT 58.908 45.455 0.00 0.00 34.94 3.55
694 695 3.790152 TGCTACAGTGCTCATCTAGTG 57.210 47.619 0.00 0.00 0.00 2.74
695 696 3.004210 CGATGCTACAGTGCTCATCTAGT 59.996 47.826 14.12 0.00 34.68 2.57
696 697 3.004210 ACGATGCTACAGTGCTCATCTAG 59.996 47.826 14.12 0.00 34.68 2.43
697 698 2.952310 ACGATGCTACAGTGCTCATCTA 59.048 45.455 14.12 0.00 34.68 1.98
698 699 1.753649 ACGATGCTACAGTGCTCATCT 59.246 47.619 14.12 3.74 34.68 2.90
699 700 2.215907 ACGATGCTACAGTGCTCATC 57.784 50.000 8.83 8.83 33.79 2.92
700 701 3.131223 AGTTACGATGCTACAGTGCTCAT 59.869 43.478 0.00 0.00 0.00 2.90
701 702 2.492088 AGTTACGATGCTACAGTGCTCA 59.508 45.455 0.00 0.00 0.00 4.26
702 703 3.152261 AGTTACGATGCTACAGTGCTC 57.848 47.619 0.00 0.00 0.00 4.26
703 704 3.056821 TGAAGTTACGATGCTACAGTGCT 60.057 43.478 0.00 0.00 0.00 4.40
704 705 3.060895 GTGAAGTTACGATGCTACAGTGC 59.939 47.826 0.00 0.00 0.00 4.40
705 706 4.486090 AGTGAAGTTACGATGCTACAGTG 58.514 43.478 0.00 0.00 0.00 3.66
706 707 4.785511 AGTGAAGTTACGATGCTACAGT 57.214 40.909 0.00 0.00 0.00 3.55
707 708 5.403246 AGAAGTGAAGTTACGATGCTACAG 58.597 41.667 0.00 0.00 0.00 2.74
708 709 5.386958 AGAAGTGAAGTTACGATGCTACA 57.613 39.130 0.00 0.00 0.00 2.74
709 710 7.988904 ATTAGAAGTGAAGTTACGATGCTAC 57.011 36.000 0.00 0.00 0.00 3.58
710 711 8.997621 AAATTAGAAGTGAAGTTACGATGCTA 57.002 30.769 0.00 0.00 0.00 3.49
711 712 7.907214 AAATTAGAAGTGAAGTTACGATGCT 57.093 32.000 0.00 0.00 0.00 3.79
712 713 9.084164 TCTAAATTAGAAGTGAAGTTACGATGC 57.916 33.333 0.00 0.00 0.00 3.91
719 720 9.319143 CGGATCATCTAAATTAGAAGTGAAGTT 57.681 33.333 6.82 0.00 38.50 2.66
720 721 7.928706 CCGGATCATCTAAATTAGAAGTGAAGT 59.071 37.037 6.82 0.00 38.50 3.01
721 722 7.095439 GCCGGATCATCTAAATTAGAAGTGAAG 60.095 40.741 5.05 4.24 38.50 3.02
722 723 6.706270 GCCGGATCATCTAAATTAGAAGTGAA 59.294 38.462 5.05 0.00 38.50 3.18
723 724 6.042093 AGCCGGATCATCTAAATTAGAAGTGA 59.958 38.462 5.05 7.67 38.50 3.41
724 725 6.226787 AGCCGGATCATCTAAATTAGAAGTG 58.773 40.000 5.05 2.30 38.50 3.16
725 726 6.426646 AGCCGGATCATCTAAATTAGAAGT 57.573 37.500 5.05 0.00 38.50 3.01
726 727 5.872070 GGAGCCGGATCATCTAAATTAGAAG 59.128 44.000 23.22 2.82 38.50 2.85
727 728 5.566826 CGGAGCCGGATCATCTAAATTAGAA 60.567 44.000 23.22 0.00 35.57 2.10
728 729 4.082190 CGGAGCCGGATCATCTAAATTAGA 60.082 45.833 23.22 5.07 36.05 2.10
729 730 4.082190 TCGGAGCCGGATCATCTAAATTAG 60.082 45.833 23.22 0.00 40.25 1.73
730 731 3.830178 TCGGAGCCGGATCATCTAAATTA 59.170 43.478 23.22 0.00 40.25 1.40
731 732 2.632996 TCGGAGCCGGATCATCTAAATT 59.367 45.455 23.22 0.00 40.25 1.82
732 733 2.248248 TCGGAGCCGGATCATCTAAAT 58.752 47.619 23.22 0.00 40.25 1.40
733 734 1.699730 TCGGAGCCGGATCATCTAAA 58.300 50.000 23.22 0.00 40.25 1.85
734 735 1.699730 TTCGGAGCCGGATCATCTAA 58.300 50.000 23.22 6.61 40.25 2.10
735 736 1.699730 TTTCGGAGCCGGATCATCTA 58.300 50.000 23.22 0.46 40.25 1.98
736 737 1.051812 ATTTCGGAGCCGGATCATCT 58.948 50.000 23.22 0.00 40.25 2.90
737 738 1.801178 GAATTTCGGAGCCGGATCATC 59.199 52.381 23.22 3.70 40.25 2.92
738 739 1.417890 AGAATTTCGGAGCCGGATCAT 59.582 47.619 23.22 2.83 40.25 2.45
739 740 0.830648 AGAATTTCGGAGCCGGATCA 59.169 50.000 23.22 0.00 40.25 2.92
740 741 1.503294 GAGAATTTCGGAGCCGGATC 58.497 55.000 12.38 12.38 40.25 3.36
741 742 0.249489 CGAGAATTTCGGAGCCGGAT 60.249 55.000 5.05 0.00 45.54 4.18
742 743 1.141019 CGAGAATTTCGGAGCCGGA 59.859 57.895 5.05 0.00 45.54 5.14
743 744 3.706140 CGAGAATTTCGGAGCCGG 58.294 61.111 9.29 0.00 45.54 6.13
782 783 3.644823 TCGTTCGTTGCAAGTGATAAGA 58.355 40.909 0.00 0.00 0.00 2.10
924 925 7.122055 TGTTGTTCTGTCCTTTTATGTGAAGTT 59.878 33.333 0.00 0.00 0.00 2.66
1019 1026 3.123620 GAGGACAAGCTGCTGCGG 61.124 66.667 1.35 3.55 45.42 5.69
1020 1027 3.485431 CGAGGACAAGCTGCTGCG 61.485 66.667 1.35 0.00 45.42 5.18
1054 1061 2.034685 CGAAGCATGATAGGACGAGGAA 59.965 50.000 0.00 0.00 0.00 3.36
1058 1065 1.749063 ACACGAAGCATGATAGGACGA 59.251 47.619 0.00 0.00 0.00 4.20
1059 1066 2.120232 GACACGAAGCATGATAGGACG 58.880 52.381 0.00 0.00 0.00 4.79
1060 1067 2.860735 GTGACACGAAGCATGATAGGAC 59.139 50.000 0.00 0.00 0.00 3.85
1359 1378 2.310779 AGTAGAAGCTGGACCTGACA 57.689 50.000 1.91 0.00 0.00 3.58
1465 1484 2.472861 CGAAGATGTACATGTCATCGGC 59.527 50.000 14.43 18.26 44.20 5.54
1476 1495 0.591741 CGACGGCCTCGAAGATGTAC 60.592 60.000 16.62 0.00 46.14 2.90
1478 1497 2.267681 GACGACGGCCTCGAAGATGT 62.268 60.000 25.01 3.60 46.14 3.06
1479 1498 1.586564 GACGACGGCCTCGAAGATG 60.587 63.158 25.01 0.27 46.14 2.90
1551 1573 3.378112 CCAGTTCACTCAACAAAGCTCAA 59.622 43.478 0.00 0.00 37.48 3.02
1560 1582 2.354821 GTCACCAACCAGTTCACTCAAC 59.645 50.000 0.00 0.00 34.86 3.18
1577 1603 9.953697 TGTATGTAAACCAAAAATACTTGTCAC 57.046 29.630 0.00 0.00 0.00 3.67
1804 1840 2.102420 TGCATCAGTAGTTATCACCGGG 59.898 50.000 6.32 0.00 0.00 5.73
1973 2020 3.670625 AGTGCATAGCGGTTTTCTTACA 58.329 40.909 0.00 0.00 0.00 2.41
2029 2082 6.377146 TCAAGCTCAGGGTTTTATGTTATTCC 59.623 38.462 0.00 0.00 0.00 3.01
2135 2188 6.238484 GGGTGGTTTCTTAAGATGATTGATCG 60.238 42.308 5.89 0.00 36.04 3.69
2148 2201 2.107552 CCACTTCCAGGGTGGTTTCTTA 59.892 50.000 6.70 0.00 46.42 2.10
2149 2202 1.133482 CCACTTCCAGGGTGGTTTCTT 60.133 52.381 6.70 0.00 46.42 2.52
2269 2353 1.353022 ACCGCATTTCAAGGGGAACTA 59.647 47.619 3.17 0.00 41.25 2.24
2299 2383 3.267233 TGGGGTCAATGGCCAGCT 61.267 61.111 13.05 0.00 0.00 4.24
2424 2509 5.692613 AAAATGATGCATTTGGTTTGGTG 57.307 34.783 0.00 0.00 42.32 4.17
2440 2525 6.280855 TGACTCTTGATCGACCTAAAATGA 57.719 37.500 0.00 0.00 0.00 2.57
2656 2750 1.817099 GCTGGCCTTGGAGACATCG 60.817 63.158 3.32 0.00 42.32 3.84
2659 2753 2.752358 CTGCTGGCCTTGGAGACA 59.248 61.111 3.32 0.00 39.83 3.41
2986 3080 4.101448 GGCGGGAGTGTGGCATCT 62.101 66.667 0.00 0.00 0.00 2.90
4826 4974 5.376625 TGTGCTTCTCTAAAATGTTGTCCT 58.623 37.500 0.00 0.00 0.00 3.85
5175 5371 7.900782 ATATTACAACTTCAGGTGTGTACAC 57.099 36.000 19.36 19.36 45.72 2.90
5176 5372 8.809066 ACTATATTACAACTTCAGGTGTGTACA 58.191 33.333 7.81 0.00 0.00 2.90
5205 5401 6.570571 GCCATGATGCGATCTTTCTACTACTA 60.571 42.308 0.00 0.00 0.00 1.82
5214 5410 2.646930 TCAAGCCATGATGCGATCTTT 58.353 42.857 0.00 0.00 36.02 2.52
5256 5452 2.225091 TGGCAGATGGATGAGGTTTTGT 60.225 45.455 0.00 0.00 0.00 2.83
5614 5812 1.564207 GGCGACTGACCGGTTATAAC 58.436 55.000 9.42 7.09 0.00 1.89
5744 5942 1.067565 TCCAGACTGAGTTGACATCGC 60.068 52.381 3.32 0.00 0.00 4.58
5829 6027 1.572085 CCTTGAGCTCAGCCACAACG 61.572 60.000 17.43 0.00 0.00 4.10
5854 6052 1.896694 GAGACACCTCCAGCTCCAG 59.103 63.158 0.00 0.00 33.30 3.86
6049 6247 8.793592 ACTCTAAAACCATACAAAATTGGACTC 58.206 33.333 0.00 0.00 36.79 3.36
6128 6326 6.552445 AGTTCCTCATCAGTTACTTGCTAT 57.448 37.500 0.00 0.00 0.00 2.97
6383 6584 3.764237 AACCACTTGTGGGTGTAGTAG 57.236 47.619 21.98 0.00 39.01 2.57
6481 6682 0.590195 GAGCACCACAGCAAGTTCAG 59.410 55.000 0.00 0.00 36.85 3.02
6758 6959 5.376625 TGGAATTTGCTACAACTTCTCTGT 58.623 37.500 9.38 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.