Multiple sequence alignment - TraesCS5B01G088700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G088700 chr5B 100.000 7697 0 0 1 7697 113878726 113871030 0.000000e+00 14214.0
1 TraesCS5B01G088700 chr5B 92.358 2604 179 15 2099 4684 113559959 113557358 0.000000e+00 3688.0
2 TraesCS5B01G088700 chr5B 88.621 457 45 6 5575 6029 113556194 113555743 4.060000e-152 549.0
3 TraesCS5B01G088700 chr5B 83.630 281 44 2 4199 4478 119392257 119391978 5.920000e-66 263.0
4 TraesCS5B01G088700 chr5B 77.522 347 58 12 4134 4479 320823491 320823818 2.840000e-44 191.0
5 TraesCS5B01G088700 chr5D 97.385 3901 75 11 808 4684 104475122 104471225 0.000000e+00 6613.0
6 TraesCS5B01G088700 chr5D 92.742 2604 169 14 2099 4684 104157600 104154999 0.000000e+00 3744.0
7 TraesCS5B01G088700 chr5D 96.584 2225 56 10 4684 6890 104471020 104468798 0.000000e+00 3670.0
8 TraesCS5B01G088700 chr5D 97.183 568 8 3 6952 7519 104468765 104468206 0.000000e+00 953.0
9 TraesCS5B01G088700 chr5D 87.991 458 41 8 5574 6029 104153818 104153373 5.290000e-146 529.0
10 TraesCS5B01G088700 chr5D 95.055 182 9 0 7516 7697 541600189 541600008 3.510000e-73 287.0
11 TraesCS5B01G088700 chr5D 93.989 183 11 0 7515 7697 250384019 250383837 2.120000e-70 278.0
12 TraesCS5B01G088700 chr5D 77.358 424 66 19 5371 5768 450611762 450611343 2.800000e-54 224.0
13 TraesCS5B01G088700 chr5A 96.390 3961 75 28 781 4684 107393675 107389726 0.000000e+00 6460.0
14 TraesCS5B01G088700 chr5A 92.885 2572 170 9 2099 4659 94083195 94085764 0.000000e+00 3723.0
15 TraesCS5B01G088700 chr5A 96.156 2185 65 14 4684 6851 107389521 107387339 0.000000e+00 3552.0
16 TraesCS5B01G088700 chr5A 92.746 579 28 7 6948 7519 107387224 107386653 0.000000e+00 824.0
17 TraesCS5B01G088700 chr5A 88.184 457 47 6 5575 6029 94087949 94088400 8.790000e-149 538.0
18 TraesCS5B01G088700 chr5A 78.961 789 115 19 3 748 107394546 107393766 2.500000e-134 490.0
19 TraesCS5B01G088700 chr5A 94.030 67 4 0 6888 6954 477555222 477555288 1.370000e-17 102.0
20 TraesCS5B01G088700 chr5A 93.548 62 4 0 6893 6954 580082797 580082736 8.220000e-15 93.5
21 TraesCS5B01G088700 chr5A 97.500 40 1 0 4746 4785 613119038 613119077 1.390000e-07 69.4
22 TraesCS5B01G088700 chr1D 96.111 180 7 0 7518 7697 382774281 382774102 2.100000e-75 294.0
23 TraesCS5B01G088700 chr1D 94.972 179 9 0 7516 7694 447464013 447463835 1.640000e-71 281.0
24 TraesCS5B01G088700 chr6D 94.505 182 10 0 7516 7697 22963403 22963222 1.640000e-71 281.0
25 TraesCS5B01G088700 chr6D 94.444 180 10 0 7518 7697 102475870 102475691 2.120000e-70 278.0
26 TraesCS5B01G088700 chr6D 97.059 34 1 0 727 760 450511815 450511782 3.000000e-04 58.4
27 TraesCS5B01G088700 chr4D 94.505 182 10 0 7516 7697 49503456 49503637 1.640000e-71 281.0
28 TraesCS5B01G088700 chr4D 85.115 262 38 1 4225 4485 304184272 304184533 4.580000e-67 267.0
29 TraesCS5B01G088700 chr4D 78.066 424 61 20 5371 5768 465418624 465418207 9.980000e-59 239.0
30 TraesCS5B01G088700 chr4D 93.590 78 5 0 2791 2868 178522915 178522838 4.880000e-22 117.0
31 TraesCS5B01G088700 chr7D 93.956 182 11 0 7516 7697 418544971 418544790 7.610000e-70 276.0
32 TraesCS5B01G088700 chr7D 77.907 430 65 18 5365 5768 65501680 65502105 2.780000e-59 241.0
33 TraesCS5B01G088700 chr2D 91.878 197 14 2 7503 7697 27774679 27774875 2.740000e-69 274.0
34 TraesCS5B01G088700 chr2D 100.000 30 0 0 4746 4775 634101281 634101252 1.000000e-03 56.5
35 TraesCS5B01G088700 chr3B 89.130 138 15 0 2731 2868 522886039 522886176 1.030000e-38 172.0
36 TraesCS5B01G088700 chr3B 94.382 89 5 0 3441 3529 522886170 522886258 3.750000e-28 137.0
37 TraesCS5B01G088700 chr1A 95.294 85 4 0 2784 2868 532211265 532211181 1.350000e-27 135.0
38 TraesCS5B01G088700 chr1A 93.590 78 4 1 2791 2868 233202843 233202919 1.760000e-21 115.0
39 TraesCS5B01G088700 chr1A 88.764 89 10 0 3441 3529 233202913 233203001 8.170000e-20 110.0
40 TraesCS5B01G088700 chr3A 95.385 65 3 0 6890 6954 747140070 747140134 3.800000e-18 104.0
41 TraesCS5B01G088700 chr3A 95.385 65 3 0 6890 6954 747167809 747167873 3.800000e-18 104.0
42 TraesCS5B01G088700 chr3A 90.000 70 7 0 6885 6954 675852822 675852891 2.960000e-14 91.6
43 TraesCS5B01G088700 chr4A 92.308 65 5 0 6890 6954 514811556 514811620 8.220000e-15 93.5
44 TraesCS5B01G088700 chr2A 92.308 65 5 0 6890 6954 748892347 748892283 8.220000e-15 93.5
45 TraesCS5B01G088700 chr7B 84.466 103 4 5 3427 3529 279198495 279198405 2.960000e-14 91.6
46 TraesCS5B01G088700 chr3D 92.063 63 5 0 2860 2922 197340195 197340257 1.060000e-13 89.8
47 TraesCS5B01G088700 chr2B 90.769 65 6 0 6890 6954 373185544 373185608 3.830000e-13 87.9
48 TraesCS5B01G088700 chr2B 90.164 61 6 0 6894 6954 796465768 796465708 6.400000e-11 80.5
49 TraesCS5B01G088700 chr2B 100.000 31 0 0 727 757 768611489 768611519 3.000000e-04 58.4
50 TraesCS5B01G088700 chr6A 97.059 34 1 0 729 762 72861330 72861363 3.000000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G088700 chr5B 113871030 113878726 7696 True 14214.000000 14214 100.000000 1 7697 1 chr5B.!!$R1 7696
1 TraesCS5B01G088700 chr5B 113555743 113559959 4216 True 2118.500000 3688 90.489500 2099 6029 2 chr5B.!!$R3 3930
2 TraesCS5B01G088700 chr5D 104468206 104475122 6916 True 3745.333333 6613 97.050667 808 7519 3 chr5D.!!$R5 6711
3 TraesCS5B01G088700 chr5D 104153373 104157600 4227 True 2136.500000 3744 90.366500 2099 6029 2 chr5D.!!$R4 3930
4 TraesCS5B01G088700 chr5A 107386653 107394546 7893 True 2831.500000 6460 91.063250 3 7519 4 chr5A.!!$R2 7516
5 TraesCS5B01G088700 chr5A 94083195 94088400 5205 False 2130.500000 3723 90.534500 2099 6029 2 chr5A.!!$F3 3930

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
352 353 0.230515 CGTGAATGCGTGATGGATCG 59.769 55.0 0.00 0.00 0.00 3.69 F
408 409 0.327924 CATGGCTGGGTTGTACTCCA 59.672 55.0 9.22 6.52 0.00 3.86 F
411 412 0.328258 GGCTGGGTTGTACTCCATGT 59.672 55.0 9.22 0.00 31.95 3.21 F
878 980 0.464036 CGATGAAATCCGACCCCTCA 59.536 55.0 0.00 0.00 41.39 3.86 F
1634 1771 1.327303 TTGGTGTTGGTCTTCATGGC 58.673 50.0 0.00 0.00 0.00 4.40 F
1686 1825 2.224597 TGCAGTATCCATACATGCCTGG 60.225 50.0 7.65 7.65 36.98 4.45 F
2062 2229 2.514458 ATGGTTTGGCTCTACCCAAG 57.486 50.0 0.00 0.00 45.03 3.61 F
3723 3892 0.461693 GTCACAGAGAGGATGCTGGC 60.462 60.0 0.00 0.00 36.47 4.85 F
5209 6834 2.180159 TTGGTCTAAGCCGGGCAGAC 62.180 60.0 24.15 24.15 38.36 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1412 1543 2.124403 GAGAGACGGAGGGCGGTA 60.124 66.667 0.00 0.0 0.00 4.02 R
1676 1815 3.328535 TCTAGATCACCCAGGCATGTA 57.671 47.619 0.00 0.0 0.00 2.29 R
1924 2091 3.428532 ACCTCATCAGCAAGAAAGCAAT 58.571 40.909 0.00 0.0 36.85 3.56 R
2128 2295 5.512232 CCCAAAATAGGAGAGTCAGATAGCC 60.512 48.000 0.00 0.0 0.00 3.93 R
2919 3088 3.479489 CATGTATGTGGCCAGCTTATCA 58.521 45.455 5.11 0.0 0.00 2.15 R
3642 3811 1.000955 GATAATGGTGACGCCGATCCT 59.999 52.381 0.00 0.0 41.21 3.24 R
3768 3937 1.080230 CTCAGTGGAGCACCTGACG 60.080 63.158 0.71 0.0 34.49 4.35 R
5363 6996 1.754226 AGTGGCGGTTTGAACACAAAT 59.246 42.857 0.00 0.0 36.22 2.32 R
6834 8557 0.179145 GCAGGATGACAAGCACATGC 60.179 55.000 0.00 0.0 39.69 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.672086 GTACAATTGTACTGTTTATGAGCAAAA 57.328 29.630 32.21 1.65 45.47 2.44
67 68 9.030301 ACAATTGTACTGTTTATGAGCAAAAAC 57.970 29.630 9.97 0.00 36.38 2.43
71 72 7.414436 TGTACTGTTTATGAGCAAAAACTGAC 58.586 34.615 10.49 6.31 37.72 3.51
76 77 8.129161 TGTTTATGAGCAAAAACTGACAATTG 57.871 30.769 3.24 3.24 36.70 2.32
82 83 5.477510 AGCAAAAACTGACAATTGTGTTCA 58.522 33.333 17.58 7.06 38.41 3.18
90 91 5.126869 ACTGACAATTGTGTTCATGGACAAA 59.873 36.000 17.58 0.00 38.41 2.83
91 92 5.970592 TGACAATTGTGTTCATGGACAAAA 58.029 33.333 17.58 12.30 38.41 2.44
108 109 6.761714 TGGACAAAAGAAGAAGTACTGAAGTC 59.238 38.462 0.00 0.00 0.00 3.01
109 110 6.074249 GGACAAAAGAAGAAGTACTGAAGTCG 60.074 42.308 0.00 0.00 0.00 4.18
120 121 0.794981 CTGAAGTCGGAAGAGCGACG 60.795 60.000 0.00 0.00 43.49 5.12
121 122 2.126424 AAGTCGGAAGAGCGACGC 60.126 61.111 13.03 13.03 43.49 5.19
122 123 3.628280 AAGTCGGAAGAGCGACGCC 62.628 63.158 17.79 8.26 43.49 5.68
123 124 4.415332 GTCGGAAGAGCGACGCCA 62.415 66.667 17.79 0.00 43.49 5.69
146 147 1.275291 GGGTGTCCTCTCGAACAATCA 59.725 52.381 0.00 0.00 0.00 2.57
149 150 4.113354 GGTGTCCTCTCGAACAATCATAC 58.887 47.826 0.00 0.00 0.00 2.39
153 154 3.119280 TCCTCTCGAACAATCATACGCAA 60.119 43.478 0.00 0.00 0.00 4.85
155 156 3.580731 TCTCGAACAATCATACGCAACA 58.419 40.909 0.00 0.00 0.00 3.33
176 177 4.969196 CGGGCGTCTGCACTGTGT 62.969 66.667 9.86 0.00 44.56 3.72
228 229 3.560251 CCATCCGCCCCCTACCTG 61.560 72.222 0.00 0.00 0.00 4.00
229 230 4.256180 CATCCGCCCCCTACCTGC 62.256 72.222 0.00 0.00 0.00 4.85
259 260 0.535102 CCGCATGATCAACCCTACCC 60.535 60.000 0.00 0.00 0.00 3.69
260 261 0.469917 CGCATGATCAACCCTACCCT 59.530 55.000 0.00 0.00 0.00 4.34
261 262 1.691976 CGCATGATCAACCCTACCCTA 59.308 52.381 0.00 0.00 0.00 3.53
273 274 3.961225 TACCCTAAGTCGGCGGCCA 62.961 63.158 20.71 3.24 0.00 5.36
284 285 4.241999 GCGGCCATGTGCGACATC 62.242 66.667 2.24 0.00 36.53 3.06
285 286 3.576356 CGGCCATGTGCGACATCC 61.576 66.667 2.24 0.00 36.53 3.51
287 288 3.576356 GCCATGTGCGACATCCGG 61.576 66.667 0.00 0.00 36.53 5.14
345 346 2.935191 GTGTGCGTGAATGCGTGA 59.065 55.556 0.00 0.00 37.81 4.35
352 353 0.230515 CGTGAATGCGTGATGGATCG 59.769 55.000 0.00 0.00 0.00 3.69
368 369 1.322936 GATCGCTTCTGCTTGTCTTCG 59.677 52.381 0.00 0.00 36.97 3.79
375 376 2.162921 CTGCTTGTCTTCGTGTGCGG 62.163 60.000 0.00 0.00 38.89 5.69
377 378 2.954753 CTTGTCTTCGTGTGCGGGC 61.955 63.158 0.00 0.00 38.89 6.13
403 404 3.901087 CCATCATGGCTGGGTTGTA 57.099 52.632 0.00 0.00 0.00 2.41
404 405 1.392589 CCATCATGGCTGGGTTGTAC 58.607 55.000 0.00 0.00 0.00 2.90
405 406 1.064463 CCATCATGGCTGGGTTGTACT 60.064 52.381 0.00 0.00 0.00 2.73
406 407 2.292267 CATCATGGCTGGGTTGTACTC 58.708 52.381 0.00 0.00 0.00 2.59
407 408 0.618458 TCATGGCTGGGTTGTACTCC 59.382 55.000 0.00 0.00 0.00 3.85
408 409 0.327924 CATGGCTGGGTTGTACTCCA 59.672 55.000 9.22 6.52 0.00 3.86
409 410 1.064463 CATGGCTGGGTTGTACTCCAT 60.064 52.381 9.22 0.00 34.90 3.41
411 412 0.328258 GGCTGGGTTGTACTCCATGT 59.672 55.000 9.22 0.00 31.95 3.21
412 413 1.271926 GGCTGGGTTGTACTCCATGTT 60.272 52.381 9.22 0.00 31.95 2.71
413 414 2.514803 GCTGGGTTGTACTCCATGTTT 58.485 47.619 9.22 0.00 31.95 2.83
414 415 2.488153 GCTGGGTTGTACTCCATGTTTC 59.512 50.000 9.22 0.00 31.95 2.78
416 417 4.398319 CTGGGTTGTACTCCATGTTTCTT 58.602 43.478 9.22 0.00 31.95 2.52
417 418 4.798882 TGGGTTGTACTCCATGTTTCTTT 58.201 39.130 9.22 0.00 0.00 2.52
418 419 5.942961 TGGGTTGTACTCCATGTTTCTTTA 58.057 37.500 9.22 0.00 0.00 1.85
419 420 5.766174 TGGGTTGTACTCCATGTTTCTTTAC 59.234 40.000 9.22 0.00 0.00 2.01
420 421 5.766174 GGGTTGTACTCCATGTTTCTTTACA 59.234 40.000 9.22 0.00 0.00 2.41
421 422 6.293790 GGGTTGTACTCCATGTTTCTTTACAC 60.294 42.308 9.22 0.00 0.00 2.90
422 423 6.261381 GGTTGTACTCCATGTTTCTTTACACA 59.739 38.462 0.00 0.00 0.00 3.72
439 460 8.978472 TCTTTACACATGGAGTAGCTAATTAGT 58.022 33.333 13.91 3.98 0.00 2.24
446 467 9.765795 ACATGGAGTAGCTAATTAGTTATTCAC 57.234 33.333 23.71 16.74 30.86 3.18
447 468 9.764363 CATGGAGTAGCTAATTAGTTATTCACA 57.236 33.333 23.71 19.96 30.86 3.58
489 510 1.003839 TGCGGCGAGAGAAAACCAT 60.004 52.632 12.98 0.00 0.00 3.55
492 513 2.004583 CGGCGAGAGAAAACCATGTA 57.995 50.000 0.00 0.00 0.00 2.29
503 524 5.079643 AGAAAACCATGTAGGCTGAAATGT 58.920 37.500 0.00 0.00 43.14 2.71
514 557 1.001181 GCTGAAATGTGTGCACCCATT 59.999 47.619 20.13 20.13 32.83 3.16
520 563 4.989279 AATGTGTGCACCCATTAGATTC 57.011 40.909 23.63 0.00 29.78 2.52
525 568 3.763360 TGTGCACCCATTAGATTCTTTGG 59.237 43.478 15.69 7.90 0.00 3.28
561 605 9.984190 TTCCACGCATATACAAATTATACACTA 57.016 29.630 0.00 0.00 0.00 2.74
617 661 7.176165 CAGGTATCCAACTGAATATGCATGAAT 59.824 37.037 10.16 0.00 36.86 2.57
618 662 8.385491 AGGTATCCAACTGAATATGCATGAATA 58.615 33.333 10.16 0.00 0.00 1.75
624 668 8.627403 CCAACTGAATATGCATGAATAGAAGTT 58.373 33.333 10.16 10.58 0.00 2.66
627 671 6.973843 TGAATATGCATGAATAGAAGTTGGC 58.026 36.000 10.16 0.00 0.00 4.52
629 673 6.814506 ATATGCATGAATAGAAGTTGGCTC 57.185 37.500 10.16 0.00 0.00 4.70
631 675 2.939103 GCATGAATAGAAGTTGGCTCGT 59.061 45.455 0.00 0.00 0.00 4.18
638 682 1.271102 AGAAGTTGGCTCGTCTCTCAC 59.729 52.381 0.00 0.00 0.00 3.51
651 695 0.938713 CTCTCACGAGGGTACTAGCG 59.061 60.000 0.00 0.00 33.51 4.26
653 697 1.482182 TCTCACGAGGGTACTAGCGTA 59.518 52.381 7.01 0.00 34.93 4.42
658 702 3.252701 CACGAGGGTACTAGCGTAATCAT 59.747 47.826 7.01 0.00 34.93 2.45
678 722 8.451908 AATCATGTTAGTCCTGCTAATTTACC 57.548 34.615 0.00 0.00 41.25 2.85
679 723 7.195374 TCATGTTAGTCCTGCTAATTTACCT 57.805 36.000 0.00 0.00 41.25 3.08
688 732 5.771165 TCCTGCTAATTTACCTTTCCGTTTT 59.229 36.000 0.00 0.00 0.00 2.43
702 746 7.603784 ACCTTTCCGTTTTATATTACTTGTCGT 59.396 33.333 0.00 0.00 0.00 4.34
722 766 9.846248 TTGTCGTTAAAACTTACCTATCTAGAC 57.154 33.333 0.00 0.00 0.00 2.59
744 823 8.349568 AGACATATGCTAGATACATCCGTTTA 57.650 34.615 1.58 0.00 0.00 2.01
768 847 6.917217 AGCAACAACTAAGATAGCTGAATC 57.083 37.500 0.00 0.00 0.00 2.52
771 850 5.957771 ACAACTAAGATAGCTGAATCCCA 57.042 39.130 0.00 0.00 0.00 4.37
772 851 6.506538 ACAACTAAGATAGCTGAATCCCAT 57.493 37.500 0.00 0.00 0.00 4.00
773 852 7.618019 ACAACTAAGATAGCTGAATCCCATA 57.382 36.000 0.00 0.00 0.00 2.74
778 857 9.343539 ACTAAGATAGCTGAATCCCATAAAAAC 57.656 33.333 0.00 0.00 0.00 2.43
779 858 9.566432 CTAAGATAGCTGAATCCCATAAAAACT 57.434 33.333 0.00 0.00 0.00 2.66
803 905 9.988350 ACTAAAATAGCTGAATGTTTAATGACG 57.012 29.630 0.00 0.00 0.00 4.35
806 908 9.988350 AAAATAGCTGAATGTTTAATGACGTAG 57.012 29.630 0.00 0.00 0.00 3.51
822 924 4.216042 TGACGTAGACGGTTCAGTTAATGA 59.784 41.667 7.04 0.00 44.95 2.57
873 975 7.117812 ACAATACAATATCGATGAAATCCGACC 59.882 37.037 8.54 0.00 41.39 4.79
874 976 4.315803 ACAATATCGATGAAATCCGACCC 58.684 43.478 8.54 0.00 41.39 4.46
875 977 3.611766 ATATCGATGAAATCCGACCCC 57.388 47.619 8.54 0.00 41.39 4.95
876 978 1.424638 ATCGATGAAATCCGACCCCT 58.575 50.000 0.00 0.00 41.39 4.79
877 979 0.750850 TCGATGAAATCCGACCCCTC 59.249 55.000 0.00 0.00 41.39 4.30
878 980 0.464036 CGATGAAATCCGACCCCTCA 59.536 55.000 0.00 0.00 41.39 3.86
880 982 2.679639 CGATGAAATCCGACCCCTCAAA 60.680 50.000 0.00 0.00 41.39 2.69
881 983 2.489938 TGAAATCCGACCCCTCAAAG 57.510 50.000 0.00 0.00 0.00 2.77
884 986 3.181438 TGAAATCCGACCCCTCAAAGAAA 60.181 43.478 0.00 0.00 0.00 2.52
885 987 3.518992 AATCCGACCCCTCAAAGAAAA 57.481 42.857 0.00 0.00 0.00 2.29
886 988 3.518992 ATCCGACCCCTCAAAGAAAAA 57.481 42.857 0.00 0.00 0.00 1.94
1076 1189 4.758251 CATCACTGCCGTCCGCCA 62.758 66.667 0.00 0.00 36.24 5.69
1592 1728 6.056884 TGAAACTGTAAACCGTAGAATTGGT 58.943 36.000 0.00 0.00 41.20 3.67
1604 1740 4.621747 CGTAGAATTGGTTGAGAGCTCCTT 60.622 45.833 10.93 0.00 0.00 3.36
1623 1759 5.841810 TCCTTTTGCTCTATTTTGGTGTTG 58.158 37.500 0.00 0.00 0.00 3.33
1626 1762 4.846779 TTGCTCTATTTTGGTGTTGGTC 57.153 40.909 0.00 0.00 0.00 4.02
1634 1771 1.327303 TTGGTGTTGGTCTTCATGGC 58.673 50.000 0.00 0.00 0.00 4.40
1638 1775 2.488153 GGTGTTGGTCTTCATGGCTAAC 59.512 50.000 0.00 0.00 41.31 2.34
1676 1815 4.081406 TGCTCTTTTTGTGCAGTATCCAT 58.919 39.130 0.00 0.00 39.83 3.41
1678 1817 5.123820 TGCTCTTTTTGTGCAGTATCCATAC 59.876 40.000 0.00 0.00 39.83 2.39
1686 1825 2.224597 TGCAGTATCCATACATGCCTGG 60.225 50.000 7.65 7.65 36.98 4.45
1729 1868 7.624549 AGAAATTGCTAGTTCATTGGTAGAGA 58.375 34.615 10.73 0.00 30.96 3.10
1778 1917 9.284968 AGTGTTTAATACAGTTCTTGTTAGCAT 57.715 29.630 0.00 0.00 41.29 3.79
1779 1918 9.543018 GTGTTTAATACAGTTCTTGTTAGCATC 57.457 33.333 0.00 0.00 41.29 3.91
1886 2053 3.668447 TGTCCTGCTCTTGTCAGATTTC 58.332 45.455 0.00 0.00 33.54 2.17
1890 2057 5.877012 GTCCTGCTCTTGTCAGATTTCATAA 59.123 40.000 0.00 0.00 33.54 1.90
1924 2091 4.933505 TTTTGCCATTCATGTTCACTGA 57.066 36.364 0.00 0.00 0.00 3.41
2005 2172 3.795688 TTTCCTTCAATCCTGACTGCT 57.204 42.857 0.00 0.00 0.00 4.24
2062 2229 2.514458 ATGGTTTGGCTCTACCCAAG 57.486 50.000 0.00 0.00 45.03 3.61
2128 2295 8.224389 TGATGTATGGAGTTTTTATGTCATGG 57.776 34.615 0.00 0.00 0.00 3.66
2211 2380 2.758089 CCTGAGTGCGCAATCTGCC 61.758 63.158 34.21 13.07 41.12 4.85
2919 3088 8.995027 TGGTGGCTATTTCATCAACTTATTAT 57.005 30.769 0.00 0.00 0.00 1.28
3642 3811 2.019249 GCTCAAGGCTATGTTGATGCA 58.981 47.619 0.00 0.00 38.06 3.96
3723 3892 0.461693 GTCACAGAGAGGATGCTGGC 60.462 60.000 0.00 0.00 36.47 4.85
3768 3937 7.042791 GCAGCTTATGAGACTCTAAATGAAGTC 60.043 40.741 3.68 0.00 0.00 3.01
4167 4336 4.319177 ACTTTGAAGAGTATCAGGTGTGC 58.681 43.478 0.00 0.00 37.82 4.57
4446 4615 5.939296 TGATGATGAAATGCTTGACTACACA 59.061 36.000 0.00 0.00 0.00 3.72
4779 5306 4.290155 CAACTGGTGGATTCACTTTTTCG 58.710 43.478 3.62 0.00 43.17 3.46
4863 5390 7.697291 TCACAAAATACGTGTTAGTTTTTCACC 59.303 33.333 0.00 0.00 35.79 4.02
4885 5419 2.754946 ATTGCTGAATTGGCCAACAG 57.245 45.000 23.27 24.27 0.00 3.16
4970 6546 2.901839 TGGTCAGTTTACCCACTAGACC 59.098 50.000 0.00 0.00 41.09 3.85
4972 6548 3.325716 GGTCAGTTTACCCACTAGACCAA 59.674 47.826 0.00 0.00 40.76 3.67
5145 6747 7.499232 AGTTGACAGGTGTTAAATCCATATAGC 59.501 37.037 0.99 0.00 0.00 2.97
5202 6827 3.560068 GGTATCATGTTTGGTCTAAGCCG 59.440 47.826 0.00 0.00 0.00 5.52
5209 6834 2.180159 TTGGTCTAAGCCGGGCAGAC 62.180 60.000 24.15 24.15 38.36 3.51
5321 6953 2.231964 GGATTTCTTGCTGTGCATGGAA 59.768 45.455 0.00 2.40 38.76 3.53
5504 7148 3.636300 CCAACCAATACCACACCCATATG 59.364 47.826 0.00 0.00 0.00 1.78
5888 7556 2.159043 CGGTTGCATCATGTCTAGACCT 60.159 50.000 20.11 7.68 0.00 3.85
6108 7777 4.849310 GCGCTTATGGTCGGGGCA 62.849 66.667 0.00 0.00 38.50 5.36
6219 7888 2.996168 ATAAGGGGCTCGCGTGCATC 62.996 60.000 31.19 22.23 34.04 3.91
6270 7939 1.354368 CCAACTTCACTATGTGGGGGT 59.646 52.381 0.00 0.00 33.87 4.95
6288 7957 1.834263 GGTATGTTCCTCCTGAGCTGT 59.166 52.381 0.00 0.00 0.00 4.40
6289 7958 2.237392 GGTATGTTCCTCCTGAGCTGTT 59.763 50.000 0.00 0.00 0.00 3.16
6834 8557 1.726251 CGATATAGAGCGCGACACAGG 60.726 57.143 12.10 0.00 0.00 4.00
6867 8592 0.321564 TCCTGCTCCGTTCACATTGG 60.322 55.000 0.00 0.00 0.00 3.16
6923 8648 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
6924 8649 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
6925 8650 1.546961 AGACCAGGTCTCACGGTTAG 58.453 55.000 17.31 0.00 38.71 2.34
6926 8651 1.203025 AGACCAGGTCTCACGGTTAGT 60.203 52.381 17.31 0.00 38.71 2.24
6927 8652 2.040813 AGACCAGGTCTCACGGTTAGTA 59.959 50.000 17.31 0.00 38.71 1.82
6928 8653 3.022406 GACCAGGTCTCACGGTTAGTAT 58.978 50.000 12.94 0.00 31.63 2.12
6929 8654 4.080129 AGACCAGGTCTCACGGTTAGTATA 60.080 45.833 17.31 0.00 38.71 1.47
6930 8655 4.801164 ACCAGGTCTCACGGTTAGTATAT 58.199 43.478 0.00 0.00 0.00 0.86
6931 8656 4.583489 ACCAGGTCTCACGGTTAGTATATG 59.417 45.833 0.00 0.00 0.00 1.78
6932 8657 4.825634 CCAGGTCTCACGGTTAGTATATGA 59.174 45.833 0.00 0.00 0.00 2.15
6933 8658 5.048643 CCAGGTCTCACGGTTAGTATATGAG 60.049 48.000 0.00 0.00 38.51 2.90
6934 8659 5.763698 CAGGTCTCACGGTTAGTATATGAGA 59.236 44.000 0.00 0.00 42.63 3.27
6937 8662 5.068636 TCTCACGGTTAGTATATGAGACCC 58.931 45.833 0.00 0.00 40.59 4.46
6938 8663 3.817084 TCACGGTTAGTATATGAGACCCG 59.183 47.826 0.00 0.00 39.96 5.28
6939 8664 3.825328 ACGGTTAGTATATGAGACCCGT 58.175 45.455 0.00 0.00 42.15 5.28
6940 8665 3.817647 ACGGTTAGTATATGAGACCCGTC 59.182 47.826 0.00 0.00 43.34 4.79
6941 8666 4.070716 CGGTTAGTATATGAGACCCGTCT 58.929 47.826 0.00 0.00 43.78 4.18
6942 8667 4.518211 CGGTTAGTATATGAGACCCGTCTT 59.482 45.833 0.00 0.00 40.61 3.01
6943 8668 5.562307 CGGTTAGTATATGAGACCCGTCTTG 60.562 48.000 0.00 0.00 40.61 3.02
6944 8669 5.533903 GGTTAGTATATGAGACCCGTCTTGA 59.466 44.000 0.00 0.00 40.61 3.02
6945 8670 6.208994 GGTTAGTATATGAGACCCGTCTTGAT 59.791 42.308 0.00 0.00 40.61 2.57
6946 8671 5.713792 AGTATATGAGACCCGTCTTGATG 57.286 43.478 0.00 0.00 40.61 3.07
6947 8672 4.524714 AGTATATGAGACCCGTCTTGATGG 59.475 45.833 0.00 2.00 40.61 3.51
6948 8673 1.866015 ATGAGACCCGTCTTGATGGA 58.134 50.000 10.25 0.00 40.61 3.41
6949 8674 1.866015 TGAGACCCGTCTTGATGGAT 58.134 50.000 10.25 0.00 40.61 3.41
6950 8675 1.482182 TGAGACCCGTCTTGATGGATG 59.518 52.381 10.25 0.00 40.61 3.51
7088 8819 4.800554 CCACACAAGGGGACAGAC 57.199 61.111 0.00 0.00 0.00 3.51
7089 8820 1.836391 CCACACAAGGGGACAGACA 59.164 57.895 0.00 0.00 0.00 3.41
7168 8899 1.949847 ATGGTGAGAACTCGCGGAGG 61.950 60.000 6.13 0.00 40.79 4.30
7170 8901 2.282958 TGAGAACTCGCGGAGGGT 60.283 61.111 6.13 0.00 42.82 4.34
7457 9189 2.369394 AGCCCAACAAATAGCAGCTAC 58.631 47.619 3.59 0.00 0.00 3.58
7519 9251 4.523083 ACAACAAAGCACAAGGAGTAAGA 58.477 39.130 0.00 0.00 0.00 2.10
7520 9252 4.576463 ACAACAAAGCACAAGGAGTAAGAG 59.424 41.667 0.00 0.00 0.00 2.85
7521 9253 3.142174 ACAAAGCACAAGGAGTAAGAGC 58.858 45.455 0.00 0.00 0.00 4.09
7522 9254 3.141398 CAAAGCACAAGGAGTAAGAGCA 58.859 45.455 0.00 0.00 0.00 4.26
7523 9255 3.492102 AAGCACAAGGAGTAAGAGCAA 57.508 42.857 0.00 0.00 0.00 3.91
7524 9256 2.772287 AGCACAAGGAGTAAGAGCAAC 58.228 47.619 0.00 0.00 0.00 4.17
7525 9257 2.370189 AGCACAAGGAGTAAGAGCAACT 59.630 45.455 0.00 0.00 0.00 3.16
7526 9258 2.739379 GCACAAGGAGTAAGAGCAACTC 59.261 50.000 0.00 0.00 42.19 3.01
7527 9259 3.556004 GCACAAGGAGTAAGAGCAACTCT 60.556 47.826 3.50 0.00 43.37 3.24
7528 9260 4.322049 GCACAAGGAGTAAGAGCAACTCTA 60.322 45.833 0.00 0.00 40.28 2.43
7529 9261 5.406649 CACAAGGAGTAAGAGCAACTCTAG 58.593 45.833 0.00 0.00 40.28 2.43
7530 9262 4.081917 ACAAGGAGTAAGAGCAACTCTAGC 60.082 45.833 0.00 0.00 40.28 3.42
7531 9263 3.702792 AGGAGTAAGAGCAACTCTAGCA 58.297 45.455 0.00 0.00 40.28 3.49
7532 9264 3.699038 AGGAGTAAGAGCAACTCTAGCAG 59.301 47.826 0.00 0.00 40.28 4.24
7533 9265 3.697045 GGAGTAAGAGCAACTCTAGCAGA 59.303 47.826 0.00 0.00 40.28 4.26
7534 9266 4.439563 GGAGTAAGAGCAACTCTAGCAGAC 60.440 50.000 0.00 0.00 40.28 3.51
7535 9267 3.445805 AGTAAGAGCAACTCTAGCAGACC 59.554 47.826 0.00 0.00 40.28 3.85
7536 9268 1.190643 AGAGCAACTCTAGCAGACCC 58.809 55.000 0.00 0.00 39.28 4.46
7537 9269 0.176910 GAGCAACTCTAGCAGACCCC 59.823 60.000 0.00 0.00 0.00 4.95
7538 9270 1.153549 GCAACTCTAGCAGACCCCG 60.154 63.158 0.00 0.00 0.00 5.73
7539 9271 1.153549 CAACTCTAGCAGACCCCGC 60.154 63.158 0.00 0.00 0.00 6.13
7540 9272 1.609501 AACTCTAGCAGACCCCGCA 60.610 57.895 0.00 0.00 0.00 5.69
7541 9273 1.192146 AACTCTAGCAGACCCCGCAA 61.192 55.000 0.00 0.00 0.00 4.85
7542 9274 1.192146 ACTCTAGCAGACCCCGCAAA 61.192 55.000 0.00 0.00 0.00 3.68
7543 9275 0.036388 CTCTAGCAGACCCCGCAAAA 60.036 55.000 0.00 0.00 0.00 2.44
7544 9276 0.321298 TCTAGCAGACCCCGCAAAAC 60.321 55.000 0.00 0.00 0.00 2.43
7545 9277 1.635663 CTAGCAGACCCCGCAAAACG 61.636 60.000 0.00 0.00 43.15 3.60
7546 9278 4.700365 GCAGACCCCGCAAAACGC 62.700 66.667 0.00 0.00 41.76 4.84
7547 9279 4.038080 CAGACCCCGCAAAACGCC 62.038 66.667 0.00 0.00 41.76 5.68
7563 9295 2.756283 CCCCGGCCCGCAAAATAA 60.756 61.111 0.00 0.00 0.00 1.40
7564 9296 2.492560 CCCGGCCCGCAAAATAAC 59.507 61.111 0.00 0.00 0.00 1.89
7565 9297 2.492560 CCGGCCCGCAAAATAACC 59.507 61.111 0.00 0.00 0.00 2.85
7566 9298 2.101380 CGGCCCGCAAAATAACCG 59.899 61.111 0.00 0.00 0.00 4.44
7567 9299 2.202690 GGCCCGCAAAATAACCGC 60.203 61.111 0.00 0.00 0.00 5.68
7568 9300 2.202690 GCCCGCAAAATAACCGCC 60.203 61.111 0.00 0.00 0.00 6.13
7569 9301 2.995872 GCCCGCAAAATAACCGCCA 61.996 57.895 0.00 0.00 0.00 5.69
7570 9302 1.587054 CCCGCAAAATAACCGCCAA 59.413 52.632 0.00 0.00 0.00 4.52
7571 9303 0.038159 CCCGCAAAATAACCGCCAAA 60.038 50.000 0.00 0.00 0.00 3.28
7572 9304 1.404851 CCCGCAAAATAACCGCCAAAT 60.405 47.619 0.00 0.00 0.00 2.32
7573 9305 2.342179 CCGCAAAATAACCGCCAAATT 58.658 42.857 0.00 0.00 0.00 1.82
7574 9306 3.512680 CCGCAAAATAACCGCCAAATTA 58.487 40.909 0.00 0.00 0.00 1.40
7575 9307 4.116238 CCGCAAAATAACCGCCAAATTAT 58.884 39.130 0.00 0.00 0.00 1.28
7576 9308 4.026145 CCGCAAAATAACCGCCAAATTATG 60.026 41.667 0.00 0.00 0.00 1.90
7585 9317 3.915993 CCAAATTATGGGTCGGGGT 57.084 52.632 0.23 0.00 46.27 4.95
7586 9318 1.687563 CCAAATTATGGGTCGGGGTC 58.312 55.000 0.23 0.00 46.27 4.46
7587 9319 1.064314 CCAAATTATGGGTCGGGGTCA 60.064 52.381 0.23 0.00 46.27 4.02
7588 9320 2.297701 CAAATTATGGGTCGGGGTCAG 58.702 52.381 0.00 0.00 0.00 3.51
7589 9321 1.887797 AATTATGGGTCGGGGTCAGA 58.112 50.000 0.00 0.00 0.00 3.27
7590 9322 1.887797 ATTATGGGTCGGGGTCAGAA 58.112 50.000 0.00 0.00 0.00 3.02
7591 9323 1.659022 TTATGGGTCGGGGTCAGAAA 58.341 50.000 0.00 0.00 0.00 2.52
7592 9324 1.659022 TATGGGTCGGGGTCAGAAAA 58.341 50.000 0.00 0.00 0.00 2.29
7593 9325 0.999712 ATGGGTCGGGGTCAGAAAAT 59.000 50.000 0.00 0.00 0.00 1.82
7594 9326 0.326927 TGGGTCGGGGTCAGAAAATC 59.673 55.000 0.00 0.00 0.00 2.17
7595 9327 0.618981 GGGTCGGGGTCAGAAAATCT 59.381 55.000 0.00 0.00 0.00 2.40
7596 9328 1.679032 GGGTCGGGGTCAGAAAATCTG 60.679 57.143 0.88 0.88 45.59 2.90
7597 9329 1.087501 GTCGGGGTCAGAAAATCTGC 58.912 55.000 2.48 0.00 43.95 4.26
7598 9330 0.690192 TCGGGGTCAGAAAATCTGCA 59.310 50.000 2.48 0.00 43.95 4.41
7599 9331 0.804989 CGGGGTCAGAAAATCTGCAC 59.195 55.000 2.48 2.83 43.95 4.57
7600 9332 0.804989 GGGGTCAGAAAATCTGCACG 59.195 55.000 2.48 0.00 43.95 5.34
7601 9333 1.610624 GGGGTCAGAAAATCTGCACGA 60.611 52.381 2.48 0.00 43.95 4.35
7602 9334 1.464997 GGGTCAGAAAATCTGCACGAC 59.535 52.381 2.48 0.00 43.95 4.34
7603 9335 1.464997 GGTCAGAAAATCTGCACGACC 59.535 52.381 2.48 2.00 43.95 4.79
7604 9336 2.143122 GTCAGAAAATCTGCACGACCA 58.857 47.619 2.48 0.00 43.95 4.02
7605 9337 2.158449 GTCAGAAAATCTGCACGACCAG 59.842 50.000 2.48 0.00 43.95 4.00
7606 9338 2.037121 TCAGAAAATCTGCACGACCAGA 59.963 45.455 11.07 11.07 43.95 3.86
7607 9339 2.158449 CAGAAAATCTGCACGACCAGAC 59.842 50.000 10.94 1.24 44.00 3.51
7608 9340 1.464997 GAAAATCTGCACGACCAGACC 59.535 52.381 10.94 0.68 44.00 3.85
7609 9341 0.321653 AAATCTGCACGACCAGACCC 60.322 55.000 10.94 0.00 44.00 4.46
7610 9342 2.185310 AATCTGCACGACCAGACCCC 62.185 60.000 10.94 0.00 44.00 4.95
7611 9343 4.742201 CTGCACGACCAGACCCCG 62.742 72.222 0.00 0.00 34.77 5.73
7632 9364 4.524318 CCCGCACCGGCTCGTAAT 62.524 66.667 0.00 0.00 46.86 1.89
7633 9365 2.510691 CCGCACCGGCTCGTAATT 60.511 61.111 0.00 0.00 41.17 1.40
7634 9366 2.104253 CCGCACCGGCTCGTAATTT 61.104 57.895 0.00 0.00 41.17 1.82
7635 9367 1.641123 CCGCACCGGCTCGTAATTTT 61.641 55.000 0.00 0.00 41.17 1.82
7636 9368 0.167251 CGCACCGGCTCGTAATTTTT 59.833 50.000 0.00 0.00 38.10 1.94
7659 9391 4.193334 GGGGCGCGGCAAATCTTC 62.193 66.667 34.30 14.57 0.00 2.87
7660 9392 3.134127 GGGCGCGGCAAATCTTCT 61.134 61.111 34.30 0.00 0.00 2.85
7661 9393 2.405191 GGCGCGGCAAATCTTCTC 59.595 61.111 29.32 0.00 0.00 2.87
7662 9394 2.405191 GCGCGGCAAATCTTCTCC 59.595 61.111 8.83 0.00 0.00 3.71
7663 9395 3.102097 CGCGGCAAATCTTCTCCC 58.898 61.111 0.00 0.00 0.00 4.30
7664 9396 2.472909 CGCGGCAAATCTTCTCCCC 61.473 63.158 0.00 0.00 0.00 4.81
7665 9397 2.121538 GCGGCAAATCTTCTCCCCC 61.122 63.158 0.00 0.00 0.00 5.40
7666 9398 1.302949 CGGCAAATCTTCTCCCCCA 59.697 57.895 0.00 0.00 0.00 4.96
7667 9399 0.323360 CGGCAAATCTTCTCCCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
7668 9400 1.186200 GGCAAATCTTCTCCCCCAAC 58.814 55.000 0.00 0.00 0.00 3.77
7669 9401 1.186200 GCAAATCTTCTCCCCCAACC 58.814 55.000 0.00 0.00 0.00 3.77
7670 9402 1.272704 GCAAATCTTCTCCCCCAACCT 60.273 52.381 0.00 0.00 0.00 3.50
7671 9403 2.728007 CAAATCTTCTCCCCCAACCTC 58.272 52.381 0.00 0.00 0.00 3.85
7672 9404 2.310052 CAAATCTTCTCCCCCAACCTCT 59.690 50.000 0.00 0.00 0.00 3.69
7673 9405 3.508952 AATCTTCTCCCCCAACCTCTA 57.491 47.619 0.00 0.00 0.00 2.43
7674 9406 3.734344 ATCTTCTCCCCCAACCTCTAT 57.266 47.619 0.00 0.00 0.00 1.98
7675 9407 3.047695 TCTTCTCCCCCAACCTCTATC 57.952 52.381 0.00 0.00 0.00 2.08
7676 9408 2.592512 TCTTCTCCCCCAACCTCTATCT 59.407 50.000 0.00 0.00 0.00 1.98
7677 9409 3.014110 TCTTCTCCCCCAACCTCTATCTT 59.986 47.826 0.00 0.00 0.00 2.40
7678 9410 3.047695 TCTCCCCCAACCTCTATCTTC 57.952 52.381 0.00 0.00 0.00 2.87
7679 9411 2.317900 TCTCCCCCAACCTCTATCTTCA 59.682 50.000 0.00 0.00 0.00 3.02
7680 9412 2.436173 CTCCCCCAACCTCTATCTTCAC 59.564 54.545 0.00 0.00 0.00 3.18
7681 9413 1.139058 CCCCCAACCTCTATCTTCACG 59.861 57.143 0.00 0.00 0.00 4.35
7682 9414 1.139058 CCCCAACCTCTATCTTCACGG 59.861 57.143 0.00 0.00 0.00 4.94
7683 9415 1.139058 CCCAACCTCTATCTTCACGGG 59.861 57.143 0.00 0.00 0.00 5.28
7684 9416 1.473434 CCAACCTCTATCTTCACGGGC 60.473 57.143 0.00 0.00 0.00 6.13
7685 9417 1.482593 CAACCTCTATCTTCACGGGCT 59.517 52.381 0.00 0.00 0.00 5.19
7686 9418 1.115467 ACCTCTATCTTCACGGGCTG 58.885 55.000 0.00 0.00 0.00 4.85
7687 9419 0.390860 CCTCTATCTTCACGGGCTGG 59.609 60.000 0.00 0.00 0.00 4.85
7688 9420 0.390860 CTCTATCTTCACGGGCTGGG 59.609 60.000 0.00 0.00 0.00 4.45
7689 9421 0.032515 TCTATCTTCACGGGCTGGGA 60.033 55.000 0.00 0.00 0.00 4.37
7690 9422 0.390860 CTATCTTCACGGGCTGGGAG 59.609 60.000 0.00 0.00 0.00 4.30
7691 9423 1.048724 TATCTTCACGGGCTGGGAGG 61.049 60.000 0.33 0.33 0.00 4.30
7692 9424 4.785453 CTTCACGGGCTGGGAGGC 62.785 72.222 0.00 0.00 40.51 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.873076 TCTGGCTAATTGGCTTGTTATTTTTG 59.127 34.615 13.90 0.00 42.34 2.44
1 2 7.003402 TCTGGCTAATTGGCTTGTTATTTTT 57.997 32.000 13.90 0.00 42.34 1.94
9 10 5.357878 TGAGTTAATCTGGCTAATTGGCTTG 59.642 40.000 13.90 6.95 42.34 4.01
21 22 5.160607 TGTACAAGGGTGAGTTAATCTGG 57.839 43.478 0.00 0.00 0.00 3.86
52 53 8.057742 CACAATTGTCAGTTTTTGCTCATAAAC 58.942 33.333 8.48 7.53 34.08 2.01
65 66 4.644234 TGTCCATGAACACAATTGTCAGTT 59.356 37.500 8.48 10.99 33.55 3.16
67 68 4.834357 TGTCCATGAACACAATTGTCAG 57.166 40.909 8.48 0.75 33.55 3.51
71 72 6.979817 TCTTCTTTTGTCCATGAACACAATTG 59.020 34.615 3.24 3.24 32.60 2.32
76 77 6.136541 ACTTCTTCTTTTGTCCATGAACAC 57.863 37.500 0.00 0.00 0.00 3.32
82 83 7.283329 ACTTCAGTACTTCTTCTTTTGTCCAT 58.717 34.615 0.00 0.00 0.00 3.41
90 91 5.535406 TCTTCCGACTTCAGTACTTCTTCTT 59.465 40.000 0.00 0.00 0.00 2.52
91 92 5.071370 TCTTCCGACTTCAGTACTTCTTCT 58.929 41.667 0.00 0.00 0.00 2.85
108 109 4.717629 TGTGGCGTCGCTCTTCCG 62.718 66.667 18.11 0.00 0.00 4.30
109 110 2.811317 CTGTGGCGTCGCTCTTCC 60.811 66.667 18.11 0.00 0.00 3.46
120 121 2.665603 GAGAGGACACCCTGTGGC 59.334 66.667 0.00 0.00 44.53 5.01
121 122 1.185618 TTCGAGAGGACACCCTGTGG 61.186 60.000 0.00 0.00 44.53 4.17
122 123 0.038159 GTTCGAGAGGACACCCTGTG 60.038 60.000 0.00 0.00 44.53 3.66
123 124 0.469331 TGTTCGAGAGGACACCCTGT 60.469 55.000 0.00 0.00 46.84 4.00
212 213 4.256180 GCAGGTAGGGGGCGGATG 62.256 72.222 0.00 0.00 0.00 3.51
213 214 4.499116 AGCAGGTAGGGGGCGGAT 62.499 66.667 0.00 0.00 0.00 4.18
217 218 4.803908 GTGCAGCAGGTAGGGGGC 62.804 72.222 0.00 0.00 0.00 5.80
219 220 4.115199 GGGTGCAGCAGGTAGGGG 62.115 72.222 19.06 0.00 0.00 4.79
221 222 3.011517 AGGGGTGCAGCAGGTAGG 61.012 66.667 19.06 0.00 0.00 3.18
222 223 2.270205 CAGGGGTGCAGCAGGTAG 59.730 66.667 19.06 0.00 0.00 3.18
223 224 4.033776 GCAGGGGTGCAGCAGGTA 62.034 66.667 19.06 0.00 34.41 3.08
244 245 3.641906 CGACTTAGGGTAGGGTTGATCAT 59.358 47.826 0.00 0.00 0.00 2.45
259 260 2.173669 CACATGGCCGCCGACTTAG 61.174 63.158 4.58 0.00 0.00 2.18
260 261 2.125310 CACATGGCCGCCGACTTA 60.125 61.111 4.58 0.00 0.00 2.24
273 274 0.740868 CAAGTCCGGATGTCGCACAT 60.741 55.000 7.81 2.02 42.43 3.21
285 286 4.148825 CTCGGCTCCCCAAGTCCG 62.149 72.222 0.00 0.00 42.46 4.79
287 288 4.821589 CGCTCGGCTCCCCAAGTC 62.822 72.222 0.00 0.00 0.00 3.01
289 290 4.082523 TTCGCTCGGCTCCCCAAG 62.083 66.667 0.00 0.00 0.00 3.61
308 309 1.009829 GTAGAGAACCTGGCGCAATG 58.990 55.000 10.83 0.00 0.00 2.82
309 310 0.460284 CGTAGAGAACCTGGCGCAAT 60.460 55.000 10.83 0.00 0.00 3.56
310 311 1.080093 CGTAGAGAACCTGGCGCAA 60.080 57.895 10.83 0.00 0.00 4.85
315 316 0.732880 CGCACACGTAGAGAACCTGG 60.733 60.000 0.00 0.00 33.53 4.45
352 353 1.070309 CACACGAAGACAAGCAGAAGC 60.070 52.381 0.00 0.00 42.56 3.86
368 369 4.241999 GCATGATCGCCCGCACAC 62.242 66.667 0.00 0.00 0.00 3.82
394 395 4.021102 AGAAACATGGAGTACAACCCAG 57.979 45.455 0.00 0.00 35.67 4.45
397 398 6.261381 TGTGTAAAGAAACATGGAGTACAACC 59.739 38.462 0.00 0.00 0.00 3.77
398 399 7.254227 TGTGTAAAGAAACATGGAGTACAAC 57.746 36.000 0.00 0.00 0.00 3.32
400 401 7.433708 CATGTGTAAAGAAACATGGAGTACA 57.566 36.000 7.70 0.00 46.43 2.90
408 409 6.476378 AGCTACTCCATGTGTAAAGAAACAT 58.524 36.000 0.00 0.00 37.50 2.71
409 410 5.865085 AGCTACTCCATGTGTAAAGAAACA 58.135 37.500 0.00 0.00 0.00 2.83
412 413 9.817809 CTAATTAGCTACTCCATGTGTAAAGAA 57.182 33.333 0.00 0.00 0.00 2.52
413 414 8.978472 ACTAATTAGCTACTCCATGTGTAAAGA 58.022 33.333 12.54 0.00 0.00 2.52
414 415 9.601217 AACTAATTAGCTACTCCATGTGTAAAG 57.399 33.333 12.54 0.00 0.00 1.85
418 419 9.765795 GAATAACTAATTAGCTACTCCATGTGT 57.234 33.333 12.54 0.00 0.00 3.72
419 420 9.764363 TGAATAACTAATTAGCTACTCCATGTG 57.236 33.333 12.54 0.00 0.00 3.21
420 421 9.765795 GTGAATAACTAATTAGCTACTCCATGT 57.234 33.333 12.54 0.00 0.00 3.21
421 422 9.764363 TGTGAATAACTAATTAGCTACTCCATG 57.236 33.333 12.54 0.00 0.00 3.66
439 460 3.640967 GCCCAAGCCCAATATGTGAATAA 59.359 43.478 0.00 0.00 0.00 1.40
473 494 1.927174 CTACATGGTTTTCTCTCGCCG 59.073 52.381 0.00 0.00 0.00 6.46
476 497 2.932614 CAGCCTACATGGTTTTCTCTCG 59.067 50.000 0.00 0.00 38.35 4.04
478 499 4.640771 TTCAGCCTACATGGTTTTCTCT 57.359 40.909 0.00 0.00 38.35 3.10
479 500 5.183904 ACATTTCAGCCTACATGGTTTTCTC 59.816 40.000 0.00 0.00 38.35 2.87
489 510 1.879380 GTGCACACATTTCAGCCTACA 59.121 47.619 13.17 0.00 0.00 2.74
492 513 1.181098 GGGTGCACACATTTCAGCCT 61.181 55.000 20.43 0.00 43.07 4.58
503 524 3.763360 CCAAAGAATCTAATGGGTGCACA 59.237 43.478 20.43 0.00 0.00 4.57
535 578 8.896320 AGTGTATAATTTGTATATGCGTGGAA 57.104 30.769 0.00 0.00 0.00 3.53
577 621 8.520351 AGTTGGATACCTGTTATTTTTAGCAAC 58.480 33.333 0.00 0.00 0.00 4.17
586 630 7.998383 TGCATATTCAGTTGGATACCTGTTATT 59.002 33.333 0.00 0.00 0.00 1.40
591 635 5.999600 TCATGCATATTCAGTTGGATACCTG 59.000 40.000 0.00 0.00 0.00 4.00
598 642 8.162878 ACTTCTATTCATGCATATTCAGTTGG 57.837 34.615 0.00 0.00 0.00 3.77
617 661 2.488545 GTGAGAGACGAGCCAACTTCTA 59.511 50.000 0.00 0.00 0.00 2.10
618 662 1.271102 GTGAGAGACGAGCCAACTTCT 59.729 52.381 0.00 0.00 0.00 2.85
631 675 6.187516 TTACGCTAGTACCCTCGTGAGAGA 62.188 50.000 12.28 0.00 46.17 3.10
638 682 3.252701 ACATGATTACGCTAGTACCCTCG 59.747 47.826 0.00 0.00 31.60 4.63
649 693 3.458189 AGCAGGACTAACATGATTACGC 58.542 45.455 0.00 0.00 31.40 4.42
653 697 8.275040 AGGTAAATTAGCAGGACTAACATGATT 58.725 33.333 0.00 0.00 43.60 2.57
658 702 6.882678 GGAAAGGTAAATTAGCAGGACTAACA 59.117 38.462 4.96 0.00 43.60 2.41
722 766 7.545615 TGCTTAAACGGATGTATCTAGCATATG 59.454 37.037 0.00 0.00 31.80 1.78
727 771 5.522460 TGTTGCTTAAACGGATGTATCTAGC 59.478 40.000 0.00 0.00 42.10 3.42
744 823 6.317391 GGATTCAGCTATCTTAGTTGTTGCTT 59.683 38.462 0.00 0.00 38.09 3.91
778 857 9.988350 ACGTCATTAAACATTCAGCTATTTTAG 57.012 29.630 0.00 0.00 0.00 1.85
784 886 6.471198 CGTCTACGTCATTAAACATTCAGCTA 59.529 38.462 0.00 0.00 34.11 3.32
800 902 4.726416 TCATTAACTGAACCGTCTACGTC 58.274 43.478 0.00 0.00 37.74 4.34
803 905 4.745649 AGCTCATTAACTGAACCGTCTAC 58.254 43.478 0.00 0.00 32.14 2.59
806 908 5.358298 AAAAGCTCATTAACTGAACCGTC 57.642 39.130 0.00 0.00 32.14 4.79
886 988 8.268605 GGTTAATCTCATAGTCTCTCCCTTTTT 58.731 37.037 0.00 0.00 0.00 1.94
887 989 7.418025 CGGTTAATCTCATAGTCTCTCCCTTTT 60.418 40.741 0.00 0.00 0.00 2.27
888 990 6.041069 CGGTTAATCTCATAGTCTCTCCCTTT 59.959 42.308 0.00 0.00 0.00 3.11
889 991 5.536916 CGGTTAATCTCATAGTCTCTCCCTT 59.463 44.000 0.00 0.00 0.00 3.95
891 993 4.218852 CCGGTTAATCTCATAGTCTCTCCC 59.781 50.000 0.00 0.00 0.00 4.30
892 994 4.321378 GCCGGTTAATCTCATAGTCTCTCC 60.321 50.000 1.90 0.00 0.00 3.71
893 995 4.321378 GGCCGGTTAATCTCATAGTCTCTC 60.321 50.000 1.90 0.00 0.00 3.20
899 1006 5.278463 CCAATTTGGCCGGTTAATCTCATAG 60.278 44.000 1.90 0.00 0.00 2.23
1076 1189 3.461773 CCTGGCCGTCTGATCCGT 61.462 66.667 0.00 0.00 0.00 4.69
1152 1267 5.306937 GGAGGAAATCTGGGGAAAAGAAAAA 59.693 40.000 0.00 0.00 0.00 1.94
1336 1467 3.480133 GGGCGGGATGTAGCTGGT 61.480 66.667 0.00 0.00 0.00 4.00
1412 1543 2.124403 GAGAGACGGAGGGCGGTA 60.124 66.667 0.00 0.00 0.00 4.02
1604 1740 4.892934 AGACCAACACCAAAATAGAGCAAA 59.107 37.500 0.00 0.00 0.00 3.68
1655 1792 4.708726 ATGGATACTGCACAAAAAGAGC 57.291 40.909 0.00 0.00 37.61 4.09
1656 1793 6.741992 TGTATGGATACTGCACAAAAAGAG 57.258 37.500 0.00 0.00 34.41 2.85
1657 1794 6.404623 GCATGTATGGATACTGCACAAAAAGA 60.405 38.462 12.49 0.00 37.36 2.52
1676 1815 3.328535 TCTAGATCACCCAGGCATGTA 57.671 47.619 0.00 0.00 0.00 2.29
1678 1817 3.784511 AATCTAGATCACCCAGGCATG 57.215 47.619 5.51 0.00 0.00 4.06
1686 1825 8.563732 GCAATTTCTTCCTTAATCTAGATCACC 58.436 37.037 5.51 0.00 0.00 4.02
1778 1917 4.777896 AGACCTCATAACACCTAAAGCAGA 59.222 41.667 0.00 0.00 0.00 4.26
1779 1918 5.091261 AGACCTCATAACACCTAAAGCAG 57.909 43.478 0.00 0.00 0.00 4.24
1794 1933 4.062991 GCCTTCTTTTAAACGAGACCTCA 58.937 43.478 0.00 0.00 0.00 3.86
1890 2057 9.595823 CATGAATGGCAAAATTCTAAAGAGATT 57.404 29.630 0.00 0.00 37.44 2.40
1924 2091 3.428532 ACCTCATCAGCAAGAAAGCAAT 58.571 40.909 0.00 0.00 36.85 3.56
2001 2168 8.345565 ACAACTTAAAGTTAATGAGACAAGCAG 58.654 33.333 0.00 0.00 36.03 4.24
2062 2229 6.750148 TCTCTTGACAAAGTAAAGTCCTCTC 58.250 40.000 0.00 0.00 34.78 3.20
2128 2295 5.512232 CCCAAAATAGGAGAGTCAGATAGCC 60.512 48.000 0.00 0.00 0.00 3.93
2919 3088 3.479489 CATGTATGTGGCCAGCTTATCA 58.521 45.455 5.11 0.00 0.00 2.15
3642 3811 1.000955 GATAATGGTGACGCCGATCCT 59.999 52.381 0.00 0.00 41.21 3.24
3723 3892 1.141881 AGTACGCAGCCTGGATTCG 59.858 57.895 1.75 1.75 0.00 3.34
3768 3937 1.080230 CTCAGTGGAGCACCTGACG 60.080 63.158 0.71 0.00 34.49 4.35
4167 4336 1.673009 AACACCCACCGTAATGGCG 60.673 57.895 0.00 0.00 43.94 5.69
4446 4615 7.178983 TCCAAGATGCCATTTCTTAGTTGATTT 59.821 33.333 0.00 0.00 32.27 2.17
4594 4763 4.213513 GGAGCAATGAAGGAATTCTGGAT 58.786 43.478 5.23 0.00 0.00 3.41
4779 5306 8.684973 TCTAATGAAGTTTCGAAAGTAGCTAC 57.315 34.615 18.22 16.43 0.00 3.58
4863 5390 1.994779 GTTGGCCAATTCAGCAATTCG 59.005 47.619 23.66 0.00 28.97 3.34
4885 5419 2.026262 TGAACCAGACAAGGCCTATTCC 60.026 50.000 5.16 0.00 0.00 3.01
4970 6546 6.455646 CGTTAGCTAGGAGTTAATGCACTTTG 60.456 42.308 0.00 0.00 0.00 2.77
4972 6548 5.109903 CGTTAGCTAGGAGTTAATGCACTT 58.890 41.667 0.00 0.00 0.00 3.16
5145 6747 3.615224 TTTAAGTAGGCCTGTAACGGG 57.385 47.619 17.99 0.00 0.00 5.28
5202 6827 2.031870 ACCAACAAAGAAAGTCTGCCC 58.968 47.619 0.00 0.00 0.00 5.36
5209 6834 9.493206 CAATCAAAAATTCACCAACAAAGAAAG 57.507 29.630 0.00 0.00 0.00 2.62
5263 6894 3.437741 CGCCCGTTAGTAAATGAAAACCT 59.562 43.478 0.00 0.00 0.00 3.50
5363 6996 1.754226 AGTGGCGGTTTGAACACAAAT 59.246 42.857 0.00 0.00 36.22 2.32
5368 7001 2.489971 CTCTTAGTGGCGGTTTGAACA 58.510 47.619 0.00 0.00 0.00 3.18
5419 7052 4.859304 AGGTGTATGTAAGTGTGACGAA 57.141 40.909 0.00 0.00 0.00 3.85
5504 7148 5.471456 AGTCACAAAAATGAGACTGGTCATC 59.529 40.000 7.89 0.00 38.10 2.92
6108 7777 2.165998 GATGCAAGGGAAAGCAAGAGT 58.834 47.619 0.00 0.00 44.88 3.24
6219 7888 3.498397 AGCAGTACAAAAATCCTGTGACG 59.502 43.478 0.00 0.00 0.00 4.35
6270 7939 4.640771 AAAACAGCTCAGGAGGAACATA 57.359 40.909 0.00 0.00 0.00 2.29
6538 8210 9.741168 CTGTAATAAACAAATACAACTCGACAG 57.259 33.333 0.00 0.00 37.74 3.51
6735 8407 3.064207 CTGCGTAAAAGAGTTGTAGCCA 58.936 45.455 0.00 0.00 0.00 4.75
6815 8493 1.970447 CCTGTGTCGCGCTCTATATC 58.030 55.000 5.56 0.00 0.00 1.63
6820 8498 4.074526 ATGCCTGTGTCGCGCTCT 62.075 61.111 5.56 0.00 0.00 4.09
6834 8557 0.179145 GCAGGATGACAAGCACATGC 60.179 55.000 0.00 0.00 39.69 4.06
6906 8631 1.203025 ACTAACCGTGAGACCTGGTCT 60.203 52.381 28.70 28.70 46.42 3.85
6907 8632 1.254954 ACTAACCGTGAGACCTGGTC 58.745 55.000 19.20 19.20 34.11 4.02
6910 8635 5.763698 TCTCATATACTAACCGTGAGACCTG 59.236 44.000 0.00 0.00 40.06 4.00
6914 8639 5.068636 GGGTCTCATATACTAACCGTGAGA 58.931 45.833 0.00 0.00 41.99 3.27
6917 8642 4.156664 CGGGTCTCATATACTAACCGTG 57.843 50.000 0.00 0.00 35.67 4.94
6919 8644 4.070716 AGACGGGTCTCATATACTAACCG 58.929 47.826 0.00 0.00 45.06 4.44
6920 8645 5.533903 TCAAGACGGGTCTCATATACTAACC 59.466 44.000 1.16 0.00 39.39 2.85
6921 8646 6.630444 TCAAGACGGGTCTCATATACTAAC 57.370 41.667 1.16 0.00 39.39 2.34
6922 8647 6.208797 CCATCAAGACGGGTCTCATATACTAA 59.791 42.308 1.16 0.00 39.39 2.24
6923 8648 5.710567 CCATCAAGACGGGTCTCATATACTA 59.289 44.000 1.16 0.00 39.39 1.82
6924 8649 4.524714 CCATCAAGACGGGTCTCATATACT 59.475 45.833 1.16 0.00 39.39 2.12
6925 8650 4.523173 TCCATCAAGACGGGTCTCATATAC 59.477 45.833 1.16 0.00 39.39 1.47
6926 8651 4.736473 TCCATCAAGACGGGTCTCATATA 58.264 43.478 1.16 0.00 39.39 0.86
6927 8652 3.576861 TCCATCAAGACGGGTCTCATAT 58.423 45.455 1.16 0.00 39.39 1.78
6928 8653 3.026707 TCCATCAAGACGGGTCTCATA 57.973 47.619 1.16 0.00 39.39 2.15
6929 8654 1.866015 TCCATCAAGACGGGTCTCAT 58.134 50.000 1.16 0.00 39.39 2.90
6930 8655 1.482182 CATCCATCAAGACGGGTCTCA 59.518 52.381 1.16 0.00 39.39 3.27
6931 8656 1.757118 TCATCCATCAAGACGGGTCTC 59.243 52.381 1.16 0.00 39.39 3.36
6932 8657 1.482593 GTCATCCATCAAGACGGGTCT 59.517 52.381 0.00 0.00 42.75 3.85
6933 8658 1.207089 TGTCATCCATCAAGACGGGTC 59.793 52.381 0.00 0.00 35.09 4.46
6934 8659 1.275666 TGTCATCCATCAAGACGGGT 58.724 50.000 0.00 0.00 35.09 5.28
6935 8660 2.627515 ATGTCATCCATCAAGACGGG 57.372 50.000 0.00 0.00 35.09 5.28
6944 8669 4.081476 TCGTTCTGAACTGATGTCATCCAT 60.081 41.667 17.60 0.00 36.13 3.41
6945 8670 3.258123 TCGTTCTGAACTGATGTCATCCA 59.742 43.478 17.60 0.36 0.00 3.41
6946 8671 3.849911 TCGTTCTGAACTGATGTCATCC 58.150 45.455 17.60 0.00 0.00 3.51
6947 8672 3.305629 GCTCGTTCTGAACTGATGTCATC 59.694 47.826 17.60 5.83 0.00 2.92
6948 8673 3.257393 GCTCGTTCTGAACTGATGTCAT 58.743 45.455 17.60 0.00 0.00 3.06
6949 8674 2.610479 GGCTCGTTCTGAACTGATGTCA 60.610 50.000 17.60 0.00 0.00 3.58
6950 8675 1.996191 GGCTCGTTCTGAACTGATGTC 59.004 52.381 17.60 8.85 0.00 3.06
7086 8817 2.663826 TTGTGCCACTTTGGTTTGTC 57.336 45.000 0.00 0.00 40.46 3.18
7087 8818 2.694213 GTTTGTGCCACTTTGGTTTGT 58.306 42.857 0.00 0.00 40.46 2.83
7088 8819 1.658095 CGTTTGTGCCACTTTGGTTTG 59.342 47.619 0.00 0.00 40.46 2.93
7089 8820 1.273886 ACGTTTGTGCCACTTTGGTTT 59.726 42.857 0.00 0.00 40.46 3.27
7168 8899 1.098050 GTGATGCTGTGGATGGAACC 58.902 55.000 0.00 0.00 0.00 3.62
7170 8901 1.911357 AGAGTGATGCTGTGGATGGAA 59.089 47.619 0.00 0.00 0.00 3.53
7372 9104 7.398047 AGTTCTTAAAACCCCTTTTGTAGTTGT 59.602 33.333 0.00 0.00 31.74 3.32
7457 9189 5.866207 GGGGGACTTTCTATACTATTGGTG 58.134 45.833 0.00 0.00 0.00 4.17
7489 9221 4.381932 CCTTGTGCTTTGTTGTTTTCCTCT 60.382 41.667 0.00 0.00 0.00 3.69
7490 9222 3.865164 CCTTGTGCTTTGTTGTTTTCCTC 59.135 43.478 0.00 0.00 0.00 3.71
7519 9251 1.608717 CGGGGTCTGCTAGAGTTGCT 61.609 60.000 0.00 0.00 0.00 3.91
7520 9252 1.153549 CGGGGTCTGCTAGAGTTGC 60.154 63.158 0.00 0.00 0.00 4.17
7521 9253 1.153549 GCGGGGTCTGCTAGAGTTG 60.154 63.158 0.00 0.00 0.00 3.16
7522 9254 1.192146 TTGCGGGGTCTGCTAGAGTT 61.192 55.000 0.00 0.00 0.00 3.01
7523 9255 1.192146 TTTGCGGGGTCTGCTAGAGT 61.192 55.000 0.00 0.00 0.00 3.24
7524 9256 0.036388 TTTTGCGGGGTCTGCTAGAG 60.036 55.000 0.00 0.00 0.00 2.43
7525 9257 0.321298 GTTTTGCGGGGTCTGCTAGA 60.321 55.000 0.00 0.00 0.00 2.43
7526 9258 1.635663 CGTTTTGCGGGGTCTGCTAG 61.636 60.000 0.30 0.00 36.85 3.42
7527 9259 1.669760 CGTTTTGCGGGGTCTGCTA 60.670 57.895 0.30 0.00 36.85 3.49
7528 9260 2.978010 CGTTTTGCGGGGTCTGCT 60.978 61.111 0.30 0.00 36.85 4.24
7529 9261 4.700365 GCGTTTTGCGGGGTCTGC 62.700 66.667 0.00 0.00 41.69 4.26
7546 9278 2.756283 TTATTTTGCGGGCCGGGG 60.756 61.111 29.48 0.00 0.00 5.73
7547 9279 2.492560 GTTATTTTGCGGGCCGGG 59.507 61.111 29.48 0.00 0.00 5.73
7548 9280 2.492560 GGTTATTTTGCGGGCCGG 59.507 61.111 29.48 9.71 0.00 6.13
7549 9281 2.101380 CGGTTATTTTGCGGGCCG 59.899 61.111 24.35 24.35 0.00 6.13
7550 9282 2.202690 GCGGTTATTTTGCGGGCC 60.203 61.111 0.00 0.00 0.00 5.80
7551 9283 2.202690 GGCGGTTATTTTGCGGGC 60.203 61.111 0.00 0.00 0.00 6.13
7552 9284 0.038159 TTTGGCGGTTATTTTGCGGG 60.038 50.000 0.00 0.00 0.00 6.13
7553 9285 2.003196 ATTTGGCGGTTATTTTGCGG 57.997 45.000 0.00 0.00 0.00 5.69
7554 9286 4.026145 CCATAATTTGGCGGTTATTTTGCG 60.026 41.667 0.00 0.00 39.09 4.85
7555 9287 4.272261 CCCATAATTTGGCGGTTATTTTGC 59.728 41.667 2.21 0.00 44.97 3.68
7556 9288 5.423886 ACCCATAATTTGGCGGTTATTTTG 58.576 37.500 2.21 0.00 44.97 2.44
7557 9289 5.666462 GACCCATAATTTGGCGGTTATTTT 58.334 37.500 2.21 0.00 44.97 1.82
7558 9290 4.202070 CGACCCATAATTTGGCGGTTATTT 60.202 41.667 2.21 0.00 44.97 1.40
7559 9291 3.316868 CGACCCATAATTTGGCGGTTATT 59.683 43.478 2.21 0.00 44.97 1.40
7560 9292 2.882137 CGACCCATAATTTGGCGGTTAT 59.118 45.455 2.21 0.00 44.97 1.89
7561 9293 2.290464 CGACCCATAATTTGGCGGTTA 58.710 47.619 2.21 0.00 44.97 2.85
7562 9294 1.099689 CGACCCATAATTTGGCGGTT 58.900 50.000 2.21 0.00 44.97 4.44
7563 9295 0.750182 CCGACCCATAATTTGGCGGT 60.750 55.000 12.89 3.10 44.97 5.68
7564 9296 1.452145 CCCGACCCATAATTTGGCGG 61.452 60.000 13.59 13.59 45.60 6.13
7565 9297 1.452145 CCCCGACCCATAATTTGGCG 61.452 60.000 0.00 0.00 44.97 5.69
7566 9298 0.396556 ACCCCGACCCATAATTTGGC 60.397 55.000 0.00 0.00 44.97 4.52
7567 9299 1.064314 TGACCCCGACCCATAATTTGG 60.064 52.381 0.00 0.00 46.00 3.28
7568 9300 2.092646 TCTGACCCCGACCCATAATTTG 60.093 50.000 0.00 0.00 0.00 2.32
7569 9301 2.201830 TCTGACCCCGACCCATAATTT 58.798 47.619 0.00 0.00 0.00 1.82
7570 9302 1.887797 TCTGACCCCGACCCATAATT 58.112 50.000 0.00 0.00 0.00 1.40
7571 9303 1.887797 TTCTGACCCCGACCCATAAT 58.112 50.000 0.00 0.00 0.00 1.28
7572 9304 1.659022 TTTCTGACCCCGACCCATAA 58.341 50.000 0.00 0.00 0.00 1.90
7573 9305 1.659022 TTTTCTGACCCCGACCCATA 58.341 50.000 0.00 0.00 0.00 2.74
7574 9306 0.999712 ATTTTCTGACCCCGACCCAT 59.000 50.000 0.00 0.00 0.00 4.00
7575 9307 0.326927 GATTTTCTGACCCCGACCCA 59.673 55.000 0.00 0.00 0.00 4.51
7576 9308 0.618981 AGATTTTCTGACCCCGACCC 59.381 55.000 0.00 0.00 0.00 4.46
7586 9318 2.158449 GTCTGGTCGTGCAGATTTTCTG 59.842 50.000 0.08 0.08 46.90 3.02
7587 9319 2.417719 GTCTGGTCGTGCAGATTTTCT 58.582 47.619 0.00 0.00 0.00 2.52
7588 9320 1.464997 GGTCTGGTCGTGCAGATTTTC 59.535 52.381 0.00 0.00 0.00 2.29
7589 9321 1.523758 GGTCTGGTCGTGCAGATTTT 58.476 50.000 0.00 0.00 0.00 1.82
7590 9322 0.321653 GGGTCTGGTCGTGCAGATTT 60.322 55.000 0.00 0.00 0.00 2.17
7591 9323 1.296715 GGGTCTGGTCGTGCAGATT 59.703 57.895 0.00 0.00 0.00 2.40
7592 9324 2.660064 GGGGTCTGGTCGTGCAGAT 61.660 63.158 0.00 0.00 0.00 2.90
7593 9325 3.311110 GGGGTCTGGTCGTGCAGA 61.311 66.667 0.00 0.00 0.00 4.26
7594 9326 4.742201 CGGGGTCTGGTCGTGCAG 62.742 72.222 0.00 0.00 0.00 4.41
7617 9349 0.167251 AAAAATTACGAGCCGGTGCG 59.833 50.000 14.99 14.99 44.33 5.34
7642 9374 4.193334 GAAGATTTGCCGCGCCCC 62.193 66.667 0.00 0.00 0.00 5.80
7643 9375 3.113386 GAGAAGATTTGCCGCGCCC 62.113 63.158 0.00 0.00 0.00 6.13
7644 9376 2.405191 GAGAAGATTTGCCGCGCC 59.595 61.111 0.00 0.00 0.00 6.53
7645 9377 2.405191 GGAGAAGATTTGCCGCGC 59.595 61.111 0.00 0.00 0.00 6.86
7646 9378 2.472909 GGGGAGAAGATTTGCCGCG 61.473 63.158 0.00 0.00 0.00 6.46
7647 9379 2.121538 GGGGGAGAAGATTTGCCGC 61.122 63.158 0.00 0.00 32.25 6.53
7648 9380 0.323360 TTGGGGGAGAAGATTTGCCG 60.323 55.000 0.00 0.00 0.00 5.69
7649 9381 1.186200 GTTGGGGGAGAAGATTTGCC 58.814 55.000 0.00 0.00 0.00 4.52
7650 9382 1.186200 GGTTGGGGGAGAAGATTTGC 58.814 55.000 0.00 0.00 0.00 3.68
7651 9383 2.310052 AGAGGTTGGGGGAGAAGATTTG 59.690 50.000 0.00 0.00 0.00 2.32
7652 9384 2.648838 AGAGGTTGGGGGAGAAGATTT 58.351 47.619 0.00 0.00 0.00 2.17
7653 9385 2.367947 AGAGGTTGGGGGAGAAGATT 57.632 50.000 0.00 0.00 0.00 2.40
7654 9386 3.211000 AGATAGAGGTTGGGGGAGAAGAT 59.789 47.826 0.00 0.00 0.00 2.40
7655 9387 2.592512 AGATAGAGGTTGGGGGAGAAGA 59.407 50.000 0.00 0.00 0.00 2.87
7656 9388 3.053359 AGATAGAGGTTGGGGGAGAAG 57.947 52.381 0.00 0.00 0.00 2.85
7657 9389 3.246350 TGAAGATAGAGGTTGGGGGAGAA 60.246 47.826 0.00 0.00 0.00 2.87
7658 9390 2.317900 TGAAGATAGAGGTTGGGGGAGA 59.682 50.000 0.00 0.00 0.00 3.71
7659 9391 2.436173 GTGAAGATAGAGGTTGGGGGAG 59.564 54.545 0.00 0.00 0.00 4.30
7660 9392 2.478292 GTGAAGATAGAGGTTGGGGGA 58.522 52.381 0.00 0.00 0.00 4.81
7661 9393 1.139058 CGTGAAGATAGAGGTTGGGGG 59.861 57.143 0.00 0.00 0.00 5.40
7662 9394 1.139058 CCGTGAAGATAGAGGTTGGGG 59.861 57.143 0.00 0.00 0.00 4.96
7663 9395 1.139058 CCCGTGAAGATAGAGGTTGGG 59.861 57.143 0.00 0.00 0.00 4.12
7664 9396 1.473434 GCCCGTGAAGATAGAGGTTGG 60.473 57.143 0.00 0.00 0.00 3.77
7665 9397 1.482593 AGCCCGTGAAGATAGAGGTTG 59.517 52.381 0.00 0.00 0.00 3.77
7666 9398 1.482593 CAGCCCGTGAAGATAGAGGTT 59.517 52.381 0.00 0.00 0.00 3.50
7667 9399 1.115467 CAGCCCGTGAAGATAGAGGT 58.885 55.000 0.00 0.00 0.00 3.85
7668 9400 0.390860 CCAGCCCGTGAAGATAGAGG 59.609 60.000 0.00 0.00 0.00 3.69
7669 9401 0.390860 CCCAGCCCGTGAAGATAGAG 59.609 60.000 0.00 0.00 0.00 2.43
7670 9402 0.032515 TCCCAGCCCGTGAAGATAGA 60.033 55.000 0.00 0.00 0.00 1.98
7671 9403 0.390860 CTCCCAGCCCGTGAAGATAG 59.609 60.000 0.00 0.00 0.00 2.08
7672 9404 1.048724 CCTCCCAGCCCGTGAAGATA 61.049 60.000 0.00 0.00 0.00 1.98
7673 9405 2.370445 CCTCCCAGCCCGTGAAGAT 61.370 63.158 0.00 0.00 0.00 2.40
7674 9406 3.003173 CCTCCCAGCCCGTGAAGA 61.003 66.667 0.00 0.00 0.00 2.87
7675 9407 4.785453 GCCTCCCAGCCCGTGAAG 62.785 72.222 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.