Multiple sequence alignment - TraesCS5B01G088400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G088400 chr5B 100.000 8324 0 0 1 8324 113562176 113553853 0.000000e+00 15372.0
1 TraesCS5B01G088400 chr5B 92.358 2604 179 14 2218 4819 113876628 113874043 0.000000e+00 3688.0
2 TraesCS5B01G088400 chr5B 78.002 1041 131 47 7359 8323 527515982 527514964 1.570000e-156 564.0
3 TraesCS5B01G088400 chr5B 88.646 458 43 7 5983 6434 113873152 113872698 4.390000e-152 549.0
4 TraesCS5B01G088400 chr5B 81.720 186 28 6 1 185 145438143 145438323 5.200000e-32 150.0
5 TraesCS5B01G088400 chr5D 96.250 5067 133 20 25 5049 104159816 104154765 0.000000e+00 8251.0
6 TraesCS5B01G088400 chr5D 91.775 2699 193 21 2218 4905 104473811 104471131 0.000000e+00 3727.0
7 TraesCS5B01G088400 chr5D 93.592 2091 87 21 5054 7132 104154729 104152674 0.000000e+00 3075.0
8 TraesCS5B01G088400 chr5D 88.377 456 47 6 5983 6434 104470115 104469662 2.040000e-150 544.0
9 TraesCS5B01G088400 chr5D 85.375 253 36 1 5925 6177 450611594 450611343 2.300000e-65 261.0
10 TraesCS5B01G088400 chr5D 97.222 36 1 0 7124 7159 104152117 104152082 2.510000e-05 62.1
11 TraesCS5B01G088400 chr5A 97.940 3447 63 4 1846 5286 94082823 94086267 0.000000e+00 5965.0
12 TraesCS5B01G088400 chr5A 91.854 2713 191 22 2202 4903 107392327 107389634 0.000000e+00 3759.0
13 TraesCS5B01G088400 chr5A 95.166 1903 50 17 5279 7159 94087225 94089107 0.000000e+00 2966.0
14 TraesCS5B01G088400 chr5A 94.260 993 30 13 867 1849 94081823 94082798 0.000000e+00 1493.0
15 TraesCS5B01G088400 chr5A 89.755 449 40 6 5990 6434 107388616 107388170 3.370000e-158 569.0
16 TraesCS5B01G088400 chr5A 90.909 407 32 4 433 836 94080119 94080523 7.350000e-150 542.0
17 TraesCS5B01G088400 chr5A 92.000 375 27 3 25 398 94079553 94079925 2.660000e-144 523.0
18 TraesCS5B01G088400 chr5A 82.528 538 52 21 7816 8323 3323328 3322803 1.280000e-117 435.0
19 TraesCS5B01G088400 chr2A 92.593 864 54 4 6258 7119 592314528 592315383 0.000000e+00 1232.0
20 TraesCS5B01G088400 chr3D 79.330 1045 113 53 7359 8323 497515335 497516356 9.110000e-179 638.0
21 TraesCS5B01G088400 chr2D 83.624 458 42 19 7469 7901 555231785 555231336 4.680000e-107 399.0
22 TraesCS5B01G088400 chr2D 85.714 119 17 0 7161 7279 459037600 459037718 8.770000e-25 126.0
23 TraesCS5B01G088400 chr4D 80.038 526 60 23 7359 7849 19065379 19064864 1.720000e-91 348.0
24 TraesCS5B01G088400 chr4D 85.603 257 33 3 5921 6177 465418459 465418207 4.950000e-67 267.0
25 TraesCS5B01G088400 chr1B 81.794 379 40 20 7770 8121 516946716 516946340 2.940000e-74 291.0
26 TraesCS5B01G088400 chr1B 84.615 117 18 0 7161 7277 573041374 573041258 5.280000e-22 117.0
27 TraesCS5B01G088400 chr7D 84.825 257 37 2 5921 6177 65501851 65502105 2.980000e-64 257.0
28 TraesCS5B01G088400 chr7A 82.888 187 27 5 1 186 376329364 376329546 6.690000e-36 163.0
29 TraesCS5B01G088400 chr7A 88.321 137 14 2 51 186 490283234 490283099 6.690000e-36 163.0
30 TraesCS5B01G088400 chr6D 87.143 140 18 0 46 185 263588553 263588692 8.650000e-35 159.0
31 TraesCS5B01G088400 chr4B 82.407 108 17 2 76 182 400344840 400344734 8.900000e-15 93.5
32 TraesCS5B01G088400 chr4B 92.063 63 5 0 118 180 354599323 354599385 1.150000e-13 89.8
33 TraesCS5B01G088400 chr4B 84.058 69 10 1 117 185 348480342 348480275 1.940000e-06 65.8
34 TraesCS5B01G088400 chr3A 92.857 42 3 0 7201 7242 312681052 312681011 2.510000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G088400 chr5B 113553853 113562176 8323 True 15372.000000 15372 100.0000 1 8324 1 chr5B.!!$R1 8323
1 TraesCS5B01G088400 chr5B 113872698 113876628 3930 True 2118.500000 3688 90.5020 2218 6434 2 chr5B.!!$R3 4216
2 TraesCS5B01G088400 chr5B 527514964 527515982 1018 True 564.000000 564 78.0020 7359 8323 1 chr5B.!!$R2 964
3 TraesCS5B01G088400 chr5D 104152082 104159816 7734 True 3796.033333 8251 95.6880 25 7159 3 chr5D.!!$R2 7134
4 TraesCS5B01G088400 chr5D 104469662 104473811 4149 True 2135.500000 3727 90.0760 2218 6434 2 chr5D.!!$R3 4216
5 TraesCS5B01G088400 chr5A 94079553 94089107 9554 False 2297.800000 5965 94.0550 25 7159 5 chr5A.!!$F1 7134
6 TraesCS5B01G088400 chr5A 107388170 107392327 4157 True 2164.000000 3759 90.8045 2202 6434 2 chr5A.!!$R2 4232
7 TraesCS5B01G088400 chr5A 3322803 3323328 525 True 435.000000 435 82.5280 7816 8323 1 chr5A.!!$R1 507
8 TraesCS5B01G088400 chr2A 592314528 592315383 855 False 1232.000000 1232 92.5930 6258 7119 1 chr2A.!!$F1 861
9 TraesCS5B01G088400 chr3D 497515335 497516356 1021 False 638.000000 638 79.3300 7359 8323 1 chr3D.!!$F1 964
10 TraesCS5B01G088400 chr4D 19064864 19065379 515 True 348.000000 348 80.0380 7359 7849 1 chr4D.!!$R1 490

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.178068 TCGGGAAGTCTGCTATTGCC 59.822 55.000 0.00 0.00 38.71 4.52 F
1043 2490 1.135315 CCCGCACATCAACCAAAGATG 60.135 52.381 0.00 0.00 46.38 2.90 F
1207 2654 1.072331 AGCTACCACCACAACTCCTTG 59.928 52.381 0.00 0.00 0.00 3.61 F
2116 3591 0.680601 TCCTGTATGCGGACCGTGTA 60.681 55.000 16.73 6.02 0.00 2.90 F
2293 3775 4.944317 TGGTTTTACACAGTCAACATGTCA 59.056 37.500 0.00 0.00 0.00 3.58 F
3103 4585 0.390472 CAAAGGCCGTGAGAGGAGAC 60.390 60.000 3.50 0.00 0.00 3.36 F
3771 5253 1.345741 CTATGTGGATGCTGGATCGGT 59.654 52.381 2.99 0.00 30.87 4.69 F
5186 6799 1.381056 TGGGCTGTTGGTGTGCTTT 60.381 52.632 0.00 0.00 0.00 3.51 F
6559 9263 0.748005 TGCTATCGCTTTCCCTTGCC 60.748 55.000 0.00 0.00 36.97 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1186 2633 0.687354 AGGAGTTGTGGTGGTAGCTG 59.313 55.000 0.00 0.0 0.00 4.24 R
2099 3574 1.337071 AGATACACGGTCCGCATACAG 59.663 52.381 12.28 0.0 0.00 2.74 R
2978 4460 3.127721 GCCTGTCTTATCTTCACCTTTGC 59.872 47.826 0.00 0.0 0.00 3.68 R
2981 4463 3.620966 GCAGCCTGTCTTATCTTCACCTT 60.621 47.826 0.00 0.0 0.00 3.50 R
3175 4657 5.768662 AGCTGTAAACTCACTACTGTACTCA 59.231 40.000 0.00 0.0 0.00 3.41 R
4348 5830 2.616960 GTCATGATGCCGTCACAGTAA 58.383 47.619 0.00 0.0 40.28 2.24 R
5191 6804 1.949465 AGTGAAAGGGTTGACACGAC 58.051 50.000 0.00 0.0 38.15 4.34 R
6663 9367 1.203187 ACTTGGACCTCCTGAGCAGTA 60.203 52.381 0.00 0.0 36.82 2.74 R
7790 11112 0.234106 GCATCATGGCGTCGATTGAG 59.766 55.000 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.484334 GCAACTTCAGCCTTGATCTTC 57.516 47.619 0.00 0.00 32.27 2.87
23 24 3.080319 GCAACTTCAGCCTTGATCTTCT 58.920 45.455 0.00 0.00 32.27 2.85
24 25 3.119919 GCAACTTCAGCCTTGATCTTCTG 60.120 47.826 0.00 0.00 32.27 3.02
25 26 4.070716 CAACTTCAGCCTTGATCTTCTGT 58.929 43.478 0.00 0.00 32.27 3.41
26 27 5.240891 CAACTTCAGCCTTGATCTTCTGTA 58.759 41.667 0.00 0.00 32.27 2.74
27 28 4.826556 ACTTCAGCCTTGATCTTCTGTAC 58.173 43.478 0.00 0.00 32.27 2.90
28 29 4.530161 ACTTCAGCCTTGATCTTCTGTACT 59.470 41.667 0.00 0.00 32.27 2.73
29 30 4.727507 TCAGCCTTGATCTTCTGTACTC 57.272 45.455 0.00 0.00 0.00 2.59
136 137 0.178068 TCGGGAAGTCTGCTATTGCC 59.822 55.000 0.00 0.00 38.71 4.52
340 342 7.349859 TCCTTAGCTCCCTCATAAAAGGAATAA 59.650 37.037 6.39 0.00 38.39 1.40
341 343 8.166726 CCTTAGCTCCCTCATAAAAGGAATAAT 58.833 37.037 0.00 0.00 38.87 1.28
380 382 4.483311 TGTATATTACACGCACGACACAA 58.517 39.130 0.00 0.00 32.89 3.33
419 585 4.500127 TCCATGTGATACACGAAACGAAT 58.500 39.130 0.00 0.00 37.14 3.34
423 589 6.420903 CCATGTGATACACGAAACGAATAGAT 59.579 38.462 0.00 0.00 37.14 1.98
424 590 7.042725 CCATGTGATACACGAAACGAATAGATT 60.043 37.037 0.00 0.00 37.14 2.40
425 591 7.821595 TGTGATACACGAAACGAATAGATTT 57.178 32.000 0.00 0.00 37.14 2.17
426 592 8.246908 TGTGATACACGAAACGAATAGATTTT 57.753 30.769 0.00 0.00 37.14 1.82
508 676 4.338879 GGGATAGGCACAATCTATTGCAT 58.661 43.478 2.60 0.00 41.38 3.96
521 689 9.664332 ACAATCTATTGCATATCTATCTTCCAC 57.336 33.333 2.60 0.00 41.38 4.02
565 733 2.359900 CTCCTACTCATTGTGGTTGGC 58.640 52.381 7.60 0.00 0.00 4.52
680 848 1.215673 TCTCCCACTCGCTAGATTCCT 59.784 52.381 0.00 0.00 0.00 3.36
719 887 5.321102 TGCAACCCTATCATTACACTTTGT 58.679 37.500 0.00 0.00 0.00 2.83
744 912 3.997021 AGTAATTGACGAGCCAAGTCTTG 59.003 43.478 5.53 5.53 39.24 3.02
745 913 2.839486 ATTGACGAGCCAAGTCTTGA 57.161 45.000 14.42 0.00 39.24 3.02
755 923 4.006319 AGCCAAGTCTTGACTTAGCATTC 58.994 43.478 26.42 10.25 36.93 2.67
869 2249 7.363431 CCTAGCATAGCCTTATTAAAAGCAAC 58.637 38.462 0.00 0.00 37.37 4.17
1043 2490 1.135315 CCCGCACATCAACCAAAGATG 60.135 52.381 0.00 0.00 46.38 2.90
1207 2654 1.072331 AGCTACCACCACAACTCCTTG 59.928 52.381 0.00 0.00 0.00 3.61
1399 2846 4.397417 AGGCAGATCTGTTGTAATTTGCTC 59.603 41.667 23.38 2.37 34.41 4.26
1437 2884 7.095691 GGATTTGGTACACATGTTGAATTTGTG 60.096 37.037 0.00 5.80 44.85 3.33
1482 2929 5.682212 GCTCCTTTTGCTATATTTTGGTGGG 60.682 44.000 0.00 0.00 0.00 4.61
1671 3118 2.486013 GGTGTTACTCAAGGACCCGTTT 60.486 50.000 0.00 0.00 0.00 3.60
1672 3119 3.208594 GTGTTACTCAAGGACCCGTTTT 58.791 45.455 0.00 0.00 0.00 2.43
1849 3296 5.464030 TCCTCTGTGTAGTTGGTTACTTC 57.536 43.478 0.00 0.00 38.33 3.01
1934 3409 8.908786 ATGTAATCATACCTCATTGTAGTTGG 57.091 34.615 0.00 0.00 31.89 3.77
2007 3482 7.792925 TCAATTTATATGGTGCTAATTCGTCG 58.207 34.615 0.00 0.00 0.00 5.12
2076 3551 6.860080 AGCTGATATGTTTTTGTTGAGATGG 58.140 36.000 0.00 0.00 0.00 3.51
2116 3591 0.680601 TCCTGTATGCGGACCGTGTA 60.681 55.000 16.73 6.02 0.00 2.90
2166 3648 5.350091 AGTGCATTGTTTGGTTTTACACAAC 59.650 36.000 0.00 0.00 32.10 3.32
2293 3775 4.944317 TGGTTTTACACAGTCAACATGTCA 59.056 37.500 0.00 0.00 0.00 3.58
2981 4463 0.657312 CGAAGCAACACAGTCAGCAA 59.343 50.000 0.00 0.00 0.00 3.91
3031 4513 3.440173 AGTGTTTGGTGGCTATTTCATCG 59.560 43.478 0.00 0.00 0.00 3.84
3103 4585 0.390472 CAAAGGCCGTGAGAGGAGAC 60.390 60.000 3.50 0.00 0.00 3.36
3175 4657 6.382869 GATGAGGAAATCGACATTTTGGAT 57.617 37.500 0.00 0.00 31.94 3.41
3271 4753 2.413142 GCCAATGCTGCTGGAGACC 61.413 63.158 11.72 0.00 35.85 3.85
3771 5253 1.345741 CTATGTGGATGCTGGATCGGT 59.654 52.381 2.99 0.00 30.87 4.69
3932 5414 3.490348 ACAGCTCCTATTGTTTTGCAGT 58.510 40.909 0.00 0.00 0.00 4.40
3943 5425 6.892658 ATTGTTTTGCAGTTGATACCAGTA 57.107 33.333 0.00 0.00 0.00 2.74
4348 5830 4.280929 GCACTGGAGGACAAAATTTTACCT 59.719 41.667 21.21 21.21 0.00 3.08
4471 5953 1.821136 CTGGCAATTGGGGAGAACTTC 59.179 52.381 7.72 0.00 0.00 3.01
4474 5956 2.369394 GCAATTGGGGAGAACTTCGAT 58.631 47.619 7.72 0.00 0.00 3.59
4538 6020 2.069465 TTTGTCGGCGCATGCAACTT 62.069 50.000 19.57 0.00 45.35 2.66
4823 6311 8.738106 TGATCATGCAAACACATAGATAACAAA 58.262 29.630 0.00 0.00 0.00 2.83
4981 6478 3.697166 TGCTATTCCCTCCTTCCAAAAC 58.303 45.455 0.00 0.00 0.00 2.43
5186 6799 1.381056 TGGGCTGTTGGTGTGCTTT 60.381 52.632 0.00 0.00 0.00 3.51
5191 6804 1.660104 GCTGTTGGTGTGCTTTTGTTG 59.340 47.619 0.00 0.00 0.00 3.33
5729 8391 7.010023 CGATTTCTTACTGTGCACTAAGTTTC 58.990 38.462 19.41 13.85 0.00 2.78
5750 8412 6.912203 TTCGTCACTTTTGTTGTTCTATGA 57.088 33.333 0.00 0.00 0.00 2.15
6141 8833 4.590222 AGCAAGGAATTTTTGGATGAGTGT 59.410 37.500 5.97 0.00 0.00 3.55
6559 9263 0.748005 TGCTATCGCTTTCCCTTGCC 60.748 55.000 0.00 0.00 36.97 4.52
6602 9306 3.167485 TGGTCGTATGGTTACAAGTCCT 58.833 45.455 0.00 0.00 0.00 3.85
6663 9367 3.190535 GCACTGTCACGGGATAATTTTGT 59.809 43.478 0.00 0.00 0.00 2.83
6764 9468 9.045223 AGCTTGTTTATTTCATGTTTCCTTTTC 57.955 29.630 0.00 0.00 0.00 2.29
6813 9517 3.888583 TCGGACTGTTTTGTAAGGGTTT 58.111 40.909 0.00 0.00 0.00 3.27
6817 9521 4.885325 GGACTGTTTTGTAAGGGTTTCTCA 59.115 41.667 0.00 0.00 0.00 3.27
6826 9530 5.070001 TGTAAGGGTTTCTCATGGTCAAAG 58.930 41.667 0.00 0.00 0.00 2.77
6838 9542 0.389426 GGTCAAAGCTTCGACGGCTA 60.389 55.000 11.29 0.00 39.30 3.93
6882 9590 1.129811 CGTCGGTTTATTTCCAGGTGC 59.870 52.381 0.00 0.00 0.00 5.01
7016 9726 2.116125 GGGGCAGCTGTGGAGTTT 59.884 61.111 16.64 0.00 0.00 2.66
7107 9818 5.670485 TCATTCGCTGTGTATACAAGGATT 58.330 37.500 7.25 0.00 36.14 3.01
7159 10435 8.239998 GGGTCTTTGTCTCTTATTTTCTTCATG 58.760 37.037 0.00 0.00 0.00 3.07
7160 10436 8.239998 GGTCTTTGTCTCTTATTTTCTTCATGG 58.760 37.037 0.00 0.00 0.00 3.66
7161 10437 9.003658 GTCTTTGTCTCTTATTTTCTTCATGGA 57.996 33.333 0.00 0.00 0.00 3.41
7162 10438 9.224267 TCTTTGTCTCTTATTTTCTTCATGGAG 57.776 33.333 0.00 0.00 0.00 3.86
7163 10439 9.224267 CTTTGTCTCTTATTTTCTTCATGGAGA 57.776 33.333 0.00 0.00 0.00 3.71
7164 10440 9.745018 TTTGTCTCTTATTTTCTTCATGGAGAT 57.255 29.630 4.02 0.00 32.46 2.75
7193 10469 7.161773 ACAATTATGGTCATTGAAGTTGAGG 57.838 36.000 0.00 0.00 35.51 3.86
7194 10470 6.721208 ACAATTATGGTCATTGAAGTTGAGGT 59.279 34.615 0.00 0.00 35.51 3.85
7195 10471 7.094205 ACAATTATGGTCATTGAAGTTGAGGTC 60.094 37.037 0.00 0.00 35.51 3.85
7196 10472 3.855255 TGGTCATTGAAGTTGAGGTCA 57.145 42.857 0.00 0.00 0.00 4.02
7197 10473 4.163441 TGGTCATTGAAGTTGAGGTCAA 57.837 40.909 0.00 0.00 38.09 3.18
7198 10474 4.531854 TGGTCATTGAAGTTGAGGTCAAA 58.468 39.130 0.00 0.00 37.31 2.69
7199 10475 4.580167 TGGTCATTGAAGTTGAGGTCAAAG 59.420 41.667 0.00 0.00 37.31 2.77
7200 10476 4.540824 GTCATTGAAGTTGAGGTCAAAGC 58.459 43.478 0.00 0.00 37.31 3.51
7201 10477 4.036734 GTCATTGAAGTTGAGGTCAAAGCA 59.963 41.667 0.00 0.00 37.31 3.91
7202 10478 4.036734 TCATTGAAGTTGAGGTCAAAGCAC 59.963 41.667 0.00 0.00 37.31 4.40
7203 10479 2.997980 TGAAGTTGAGGTCAAAGCACA 58.002 42.857 0.00 0.00 37.63 4.57
7204 10480 3.351740 TGAAGTTGAGGTCAAAGCACAA 58.648 40.909 0.00 0.00 37.63 3.33
7205 10481 3.953612 TGAAGTTGAGGTCAAAGCACAAT 59.046 39.130 0.00 0.00 37.63 2.71
7206 10482 5.129634 TGAAGTTGAGGTCAAAGCACAATA 58.870 37.500 0.00 0.00 37.63 1.90
7207 10483 5.008613 TGAAGTTGAGGTCAAAGCACAATAC 59.991 40.000 0.00 0.00 37.63 1.89
7208 10484 3.498397 AGTTGAGGTCAAAGCACAATACG 59.502 43.478 0.00 0.00 37.63 3.06
7209 10485 3.394674 TGAGGTCAAAGCACAATACGA 57.605 42.857 0.00 0.00 0.00 3.43
7210 10486 3.937814 TGAGGTCAAAGCACAATACGAT 58.062 40.909 0.00 0.00 0.00 3.73
7211 10487 5.079689 TGAGGTCAAAGCACAATACGATA 57.920 39.130 0.00 0.00 0.00 2.92
7212 10488 5.483811 TGAGGTCAAAGCACAATACGATAA 58.516 37.500 0.00 0.00 0.00 1.75
7213 10489 5.350365 TGAGGTCAAAGCACAATACGATAAC 59.650 40.000 0.00 0.00 0.00 1.89
7214 10490 5.488341 AGGTCAAAGCACAATACGATAACT 58.512 37.500 0.00 0.00 0.00 2.24
7215 10491 5.351465 AGGTCAAAGCACAATACGATAACTG 59.649 40.000 0.00 0.00 0.00 3.16
7216 10492 5.447279 GGTCAAAGCACAATACGATAACTGG 60.447 44.000 0.00 0.00 0.00 4.00
7217 10493 5.350365 GTCAAAGCACAATACGATAACTGGA 59.650 40.000 0.00 0.00 0.00 3.86
7218 10494 5.350365 TCAAAGCACAATACGATAACTGGAC 59.650 40.000 0.00 0.00 0.00 4.02
7219 10495 4.737855 AGCACAATACGATAACTGGACT 57.262 40.909 0.00 0.00 0.00 3.85
7220 10496 5.086104 AGCACAATACGATAACTGGACTT 57.914 39.130 0.00 0.00 0.00 3.01
7221 10497 5.109903 AGCACAATACGATAACTGGACTTC 58.890 41.667 0.00 0.00 0.00 3.01
7222 10498 4.868171 GCACAATACGATAACTGGACTTCA 59.132 41.667 0.00 0.00 0.00 3.02
7224 10500 6.330278 CACAATACGATAACTGGACTTCAGA 58.670 40.000 0.00 0.00 46.18 3.27
7225 10501 6.811665 CACAATACGATAACTGGACTTCAGAA 59.188 38.462 0.00 0.00 46.18 3.02
7226 10502 7.492669 CACAATACGATAACTGGACTTCAGAAT 59.507 37.037 0.00 0.00 46.18 2.40
7227 10503 8.692710 ACAATACGATAACTGGACTTCAGAATA 58.307 33.333 0.00 0.00 46.18 1.75
7228 10504 9.698309 CAATACGATAACTGGACTTCAGAATAT 57.302 33.333 0.00 0.00 46.18 1.28
7229 10505 9.698309 AATACGATAACTGGACTTCAGAATATG 57.302 33.333 0.00 0.00 46.18 1.78
7230 10506 5.986135 ACGATAACTGGACTTCAGAATATGC 59.014 40.000 0.00 0.00 46.18 3.14
7231 10507 6.183360 ACGATAACTGGACTTCAGAATATGCT 60.183 38.462 0.00 0.00 46.18 3.79
7232 10508 6.364706 CGATAACTGGACTTCAGAATATGCTC 59.635 42.308 0.00 0.00 46.18 4.26
7233 10509 5.426689 AACTGGACTTCAGAATATGCTCA 57.573 39.130 0.00 0.00 46.18 4.26
7234 10510 5.426689 ACTGGACTTCAGAATATGCTCAA 57.573 39.130 0.00 0.00 46.18 3.02
7235 10511 5.999044 ACTGGACTTCAGAATATGCTCAAT 58.001 37.500 0.00 0.00 46.18 2.57
7236 10512 7.129457 ACTGGACTTCAGAATATGCTCAATA 57.871 36.000 0.00 0.00 46.18 1.90
7237 10513 6.989169 ACTGGACTTCAGAATATGCTCAATAC 59.011 38.462 0.00 0.00 46.18 1.89
7238 10514 5.985530 TGGACTTCAGAATATGCTCAATACG 59.014 40.000 0.00 0.00 0.00 3.06
7239 10515 5.406780 GGACTTCAGAATATGCTCAATACGG 59.593 44.000 0.00 0.00 0.00 4.02
7240 10516 5.918608 ACTTCAGAATATGCTCAATACGGT 58.081 37.500 0.00 0.00 0.00 4.83
7241 10517 5.986135 ACTTCAGAATATGCTCAATACGGTC 59.014 40.000 0.00 0.00 0.00 4.79
7242 10518 4.546570 TCAGAATATGCTCAATACGGTCG 58.453 43.478 0.00 0.00 0.00 4.79
7243 10519 3.121944 CAGAATATGCTCAATACGGTCGC 59.878 47.826 0.00 0.00 0.00 5.19
7244 10520 3.005897 AGAATATGCTCAATACGGTCGCT 59.994 43.478 0.00 0.00 0.00 4.93
7245 10521 4.217767 AGAATATGCTCAATACGGTCGCTA 59.782 41.667 0.00 0.00 0.00 4.26
7246 10522 2.882927 ATGCTCAATACGGTCGCTAA 57.117 45.000 0.00 0.00 0.00 3.09
7247 10523 2.658373 TGCTCAATACGGTCGCTAAA 57.342 45.000 0.00 0.00 0.00 1.85
7248 10524 3.173668 TGCTCAATACGGTCGCTAAAT 57.826 42.857 0.00 0.00 0.00 1.40
7249 10525 4.310357 TGCTCAATACGGTCGCTAAATA 57.690 40.909 0.00 0.00 0.00 1.40
7250 10526 4.878439 TGCTCAATACGGTCGCTAAATAT 58.122 39.130 0.00 0.00 0.00 1.28
7251 10527 4.684242 TGCTCAATACGGTCGCTAAATATG 59.316 41.667 0.00 0.00 0.00 1.78
7252 10528 4.921515 GCTCAATACGGTCGCTAAATATGA 59.078 41.667 0.00 0.00 0.00 2.15
7253 10529 5.061064 GCTCAATACGGTCGCTAAATATGAG 59.939 44.000 0.00 0.00 0.00 2.90
7254 10530 6.080648 TCAATACGGTCGCTAAATATGAGT 57.919 37.500 0.00 0.00 0.00 3.41
7255 10531 6.509656 TCAATACGGTCGCTAAATATGAGTT 58.490 36.000 0.00 0.00 0.00 3.01
7256 10532 6.419710 TCAATACGGTCGCTAAATATGAGTTG 59.580 38.462 0.00 0.00 0.00 3.16
7257 10533 4.119442 ACGGTCGCTAAATATGAGTTGT 57.881 40.909 0.00 0.00 0.00 3.32
7258 10534 3.863424 ACGGTCGCTAAATATGAGTTGTG 59.137 43.478 0.00 0.00 0.00 3.33
7259 10535 3.245284 CGGTCGCTAAATATGAGTTGTGG 59.755 47.826 0.00 0.00 0.00 4.17
7260 10536 4.189231 GGTCGCTAAATATGAGTTGTGGT 58.811 43.478 0.00 0.00 0.00 4.16
7261 10537 4.034048 GGTCGCTAAATATGAGTTGTGGTG 59.966 45.833 0.00 0.00 0.00 4.17
7262 10538 4.868171 GTCGCTAAATATGAGTTGTGGTGA 59.132 41.667 0.00 0.00 0.00 4.02
7263 10539 5.523916 GTCGCTAAATATGAGTTGTGGTGAT 59.476 40.000 0.00 0.00 0.00 3.06
7264 10540 6.037172 GTCGCTAAATATGAGTTGTGGTGATT 59.963 38.462 0.00 0.00 0.00 2.57
7265 10541 7.223971 GTCGCTAAATATGAGTTGTGGTGATTA 59.776 37.037 0.00 0.00 0.00 1.75
7266 10542 7.931407 TCGCTAAATATGAGTTGTGGTGATTAT 59.069 33.333 0.00 0.00 0.00 1.28
7267 10543 9.203421 CGCTAAATATGAGTTGTGGTGATTATA 57.797 33.333 0.00 0.00 0.00 0.98
7283 10559 6.423776 TGATTATATGATCACTGGCTCACA 57.576 37.500 6.09 0.00 31.35 3.58
7310 10586 1.166129 TGACTGGTCAGACTAGACGC 58.834 55.000 20.20 9.45 39.42 5.19
7311 10587 0.452585 GACTGGTCAGACTAGACGCC 59.547 60.000 20.20 3.39 39.42 5.68
7312 10588 0.251209 ACTGGTCAGACTAGACGCCA 60.251 55.000 20.20 1.56 39.42 5.69
7313 10589 0.171455 CTGGTCAGACTAGACGCCAC 59.829 60.000 8.23 0.00 39.42 5.01
7314 10590 0.251209 TGGTCAGACTAGACGCCACT 60.251 55.000 0.00 0.00 39.42 4.00
7315 10591 0.889306 GGTCAGACTAGACGCCACTT 59.111 55.000 0.00 0.00 39.42 3.16
7316 10592 2.089980 GGTCAGACTAGACGCCACTTA 58.910 52.381 0.00 0.00 39.42 2.24
7317 10593 2.097791 GGTCAGACTAGACGCCACTTAG 59.902 54.545 0.00 0.00 39.42 2.18
7318 10594 2.097791 GTCAGACTAGACGCCACTTAGG 59.902 54.545 0.00 0.00 41.84 2.69
7319 10595 2.026542 TCAGACTAGACGCCACTTAGGA 60.027 50.000 0.00 0.00 41.22 2.94
7320 10596 2.097791 CAGACTAGACGCCACTTAGGAC 59.902 54.545 0.00 0.00 41.22 3.85
7321 10597 2.089980 GACTAGACGCCACTTAGGACA 58.910 52.381 0.00 0.00 41.22 4.02
7322 10598 2.093106 ACTAGACGCCACTTAGGACAG 58.907 52.381 0.00 0.00 41.22 3.51
7323 10599 0.815734 TAGACGCCACTTAGGACAGC 59.184 55.000 0.00 0.00 41.22 4.40
7324 10600 1.185618 AGACGCCACTTAGGACAGCA 61.186 55.000 0.00 0.00 41.22 4.41
7325 10601 1.004918 ACGCCACTTAGGACAGCAC 60.005 57.895 0.00 0.00 41.22 4.40
7326 10602 1.293498 CGCCACTTAGGACAGCACT 59.707 57.895 0.00 0.00 41.22 4.40
7327 10603 0.530744 CGCCACTTAGGACAGCACTA 59.469 55.000 0.00 0.00 41.22 2.74
7328 10604 1.067142 CGCCACTTAGGACAGCACTAA 60.067 52.381 0.00 0.00 41.22 2.24
7329 10605 2.347731 GCCACTTAGGACAGCACTAAC 58.652 52.381 0.00 0.00 41.22 2.34
7330 10606 2.289444 GCCACTTAGGACAGCACTAACA 60.289 50.000 0.00 0.00 41.22 2.41
7331 10607 3.589988 CCACTTAGGACAGCACTAACAG 58.410 50.000 0.00 0.00 41.22 3.16
7332 10608 2.996621 CACTTAGGACAGCACTAACAGC 59.003 50.000 0.00 0.00 0.00 4.40
7333 10609 2.263077 CTTAGGACAGCACTAACAGCG 58.737 52.381 0.00 0.00 37.01 5.18
7334 10610 0.530744 TAGGACAGCACTAACAGCGG 59.469 55.000 0.00 0.00 37.01 5.52
7335 10611 1.004918 GGACAGCACTAACAGCGGT 60.005 57.895 0.00 0.00 42.94 5.68
7336 10612 0.245539 GGACAGCACTAACAGCGGTA 59.754 55.000 0.00 0.00 40.41 4.02
7337 10613 1.347320 GACAGCACTAACAGCGGTAC 58.653 55.000 0.00 0.00 40.41 3.34
7338 10614 0.677288 ACAGCACTAACAGCGGTACA 59.323 50.000 0.00 0.00 38.60 2.90
7339 10615 1.336887 ACAGCACTAACAGCGGTACAG 60.337 52.381 0.00 0.00 38.60 2.74
7340 10616 1.067846 CAGCACTAACAGCGGTACAGA 60.068 52.381 0.00 0.00 37.01 3.41
7341 10617 1.067776 AGCACTAACAGCGGTACAGAC 60.068 52.381 0.00 0.00 37.01 3.51
7342 10618 1.067776 GCACTAACAGCGGTACAGACT 60.068 52.381 0.00 0.00 0.00 3.24
7343 10619 2.864968 CACTAACAGCGGTACAGACTC 58.135 52.381 0.00 0.00 0.00 3.36
7344 10620 1.467734 ACTAACAGCGGTACAGACTCG 59.532 52.381 0.00 0.00 0.00 4.18
7345 10621 1.736126 CTAACAGCGGTACAGACTCGA 59.264 52.381 0.00 0.00 0.00 4.04
7346 10622 0.956633 AACAGCGGTACAGACTCGAA 59.043 50.000 0.00 0.00 0.00 3.71
7347 10623 0.956633 ACAGCGGTACAGACTCGAAA 59.043 50.000 0.00 0.00 0.00 3.46
7348 10624 1.335689 ACAGCGGTACAGACTCGAAAC 60.336 52.381 0.00 0.00 0.00 2.78
7349 10625 0.243095 AGCGGTACAGACTCGAAACC 59.757 55.000 0.00 0.00 0.00 3.27
7350 10626 0.735287 GCGGTACAGACTCGAAACCC 60.735 60.000 0.00 0.00 0.00 4.11
7351 10627 0.108945 CGGTACAGACTCGAAACCCC 60.109 60.000 0.00 0.00 0.00 4.95
7352 10628 1.264295 GGTACAGACTCGAAACCCCT 58.736 55.000 0.00 0.00 0.00 4.79
7353 10629 1.067071 GGTACAGACTCGAAACCCCTG 60.067 57.143 0.00 0.00 0.00 4.45
7354 10630 1.891150 GTACAGACTCGAAACCCCTGA 59.109 52.381 0.00 0.00 0.00 3.86
7355 10631 0.969894 ACAGACTCGAAACCCCTGAG 59.030 55.000 0.00 0.00 35.85 3.35
7356 10632 0.247736 CAGACTCGAAACCCCTGAGG 59.752 60.000 0.00 0.00 43.78 3.86
7366 10642 3.132863 CCCCTGAGGTTCGTAAACG 57.867 57.895 0.00 0.00 36.16 3.60
7374 10650 2.050168 TTCGTAAACGTCGCGCCT 60.050 55.556 0.00 0.00 40.80 5.52
7382 10658 2.879462 CGTCGCGCCTCTAACCAC 60.879 66.667 0.00 0.00 0.00 4.16
7386 10662 2.125106 GCGCCTCTAACCACCTGG 60.125 66.667 0.00 0.00 42.17 4.45
7388 10664 1.980052 CGCCTCTAACCACCTGGAA 59.020 57.895 0.00 0.00 38.94 3.53
7395 10671 0.314935 TAACCACCTGGAACGTCGTC 59.685 55.000 0.00 0.00 38.94 4.20
7398 10674 1.014044 CCACCTGGAACGTCGTCATG 61.014 60.000 0.00 0.00 37.39 3.07
7405 10681 1.126079 GAACGTCGTCATGTCGTGTT 58.874 50.000 18.76 18.76 41.42 3.32
7407 10683 1.678360 ACGTCGTCATGTCGTGTTAC 58.322 50.000 11.96 2.52 40.76 2.50
7410 10686 3.125829 ACGTCGTCATGTCGTGTTACTAT 59.874 43.478 11.96 0.00 40.76 2.12
7422 10698 2.102588 GTGTTACTATGCCGAGGACCAT 59.897 50.000 0.00 0.00 0.00 3.55
7423 10699 2.769663 TGTTACTATGCCGAGGACCATT 59.230 45.455 0.00 0.00 0.00 3.16
7425 10701 0.469917 ACTATGCCGAGGACCATTGG 59.530 55.000 0.00 0.00 0.00 3.16
7432 10708 2.163613 GCCGAGGACCATTGGTTAAAAG 59.836 50.000 10.29 1.04 35.25 2.27
7434 10710 3.190535 CCGAGGACCATTGGTTAAAAGTG 59.809 47.826 10.29 0.00 35.25 3.16
7435 10711 3.365969 CGAGGACCATTGGTTAAAAGTGC 60.366 47.826 10.29 0.00 35.25 4.40
7454 10730 4.396166 AGTGCACATAAGCTACCATGTTTC 59.604 41.667 21.04 3.30 33.12 2.78
7477 10767 9.887406 TTTCGACACTATCTTAATTTTGTTTCC 57.113 29.630 0.00 0.00 0.00 3.13
7505 10795 7.772332 TGTTCTCTCTGTGTAAGTTTCTTTC 57.228 36.000 0.00 0.00 0.00 2.62
7539 10829 5.615495 CATGCGAGCATGTTTATTTTCTG 57.385 39.130 25.11 1.77 46.20 3.02
7540 10830 4.095410 TGCGAGCATGTTTATTTTCTGG 57.905 40.909 0.00 0.00 0.00 3.86
7545 10835 5.287035 CGAGCATGTTTATTTTCTGGCTTTC 59.713 40.000 0.00 0.00 0.00 2.62
7584 10882 6.364261 GTGCGTACATGTTAATGTGTGTTAA 58.636 36.000 2.30 0.00 46.66 2.01
7587 10885 7.384387 TGCGTACATGTTAATGTGTGTTAACTA 59.616 33.333 2.30 0.00 46.66 2.24
7628 10926 7.156000 TCGATTTTTCCTGTGAGTGTGTAATA 58.844 34.615 0.00 0.00 0.00 0.98
7632 10930 8.458573 TTTTTCCTGTGAGTGTGTAATATGTT 57.541 30.769 0.00 0.00 0.00 2.71
7633 10931 7.433708 TTTCCTGTGAGTGTGTAATATGTTG 57.566 36.000 0.00 0.00 0.00 3.33
7634 10932 6.109156 TCCTGTGAGTGTGTAATATGTTGT 57.891 37.500 0.00 0.00 0.00 3.32
7635 10933 7.234661 TCCTGTGAGTGTGTAATATGTTGTA 57.765 36.000 0.00 0.00 0.00 2.41
7636 10934 7.847096 TCCTGTGAGTGTGTAATATGTTGTAT 58.153 34.615 0.00 0.00 0.00 2.29
7637 10935 7.763985 TCCTGTGAGTGTGTAATATGTTGTATG 59.236 37.037 0.00 0.00 0.00 2.39
7638 10936 7.302350 TGTGAGTGTGTAATATGTTGTATGC 57.698 36.000 0.00 0.00 0.00 3.14
7646 10968 9.606631 TGTGTAATATGTTGTATGCATGTTAGA 57.393 29.630 10.16 0.00 33.02 2.10
7654 10976 1.656652 ATGCATGTTAGAGTGTCCGC 58.343 50.000 0.00 0.00 0.00 5.54
7655 10977 0.608130 TGCATGTTAGAGTGTCCGCT 59.392 50.000 0.00 0.00 0.00 5.52
7691 11013 0.895530 ACGTGATGTTCCGTGGAGAT 59.104 50.000 0.00 0.00 35.69 2.75
7733 11055 0.331616 GTGGGCCACCTCTTATTGGT 59.668 55.000 26.51 0.00 38.53 3.67
7746 11068 3.648067 TCTTATTGGTGATAGGCCTCCTG 59.352 47.826 9.68 0.00 34.61 3.86
7782 11104 1.300620 CTCGACAAGCCGGACAACA 60.301 57.895 5.05 0.00 0.00 3.33
7783 11105 1.557443 CTCGACAAGCCGGACAACAC 61.557 60.000 5.05 0.00 0.00 3.32
7784 11106 1.594293 CGACAAGCCGGACAACACT 60.594 57.895 5.05 0.00 0.00 3.55
7786 11108 2.117941 GACAAGCCGGACAACACTGC 62.118 60.000 5.05 0.00 0.00 4.40
7787 11109 1.893808 CAAGCCGGACAACACTGCT 60.894 57.895 5.05 0.00 0.00 4.24
7790 11112 2.607892 GCCGGACAACACTGCTGTC 61.608 63.158 5.05 4.25 42.08 3.51
7793 11115 0.249447 CGGACAACACTGCTGTCTCA 60.249 55.000 11.46 0.00 42.38 3.27
7795 11117 2.498167 GGACAACACTGCTGTCTCAAT 58.502 47.619 11.46 0.00 42.38 2.57
7796 11118 2.481952 GGACAACACTGCTGTCTCAATC 59.518 50.000 11.46 0.00 42.38 2.67
7805 11127 0.926155 CTGTCTCAATCGACGCCATG 59.074 55.000 0.00 0.00 36.71 3.66
7941 11283 1.220206 CCGCTCTTGATCACCTGCT 59.780 57.895 0.00 0.00 0.00 4.24
7961 11303 3.265791 CTGAATCAACCCCTCGAAGAAG 58.734 50.000 0.00 0.00 34.09 2.85
7995 11345 4.151891 TAGCTCCCGCCCTGCCTA 62.152 66.667 0.00 0.00 36.60 3.93
8001 11351 2.272146 CCGCCCTGCCTATTGTGT 59.728 61.111 0.00 0.00 0.00 3.72
8003 11353 1.078497 CGCCCTGCCTATTGTGTCA 60.078 57.895 0.00 0.00 0.00 3.58
8045 11395 1.285078 TCCTCTCCATCCGAGTCTGAA 59.715 52.381 0.00 0.00 39.84 3.02
8051 11401 2.303022 TCCATCCGAGTCTGAAAAGCTT 59.697 45.455 0.00 0.00 0.00 3.74
8067 11417 3.851845 CTTTCGTCGCCCACCGTCA 62.852 63.158 0.00 0.00 38.35 4.35
8118 11468 4.681978 GCGGGTGCCTTCAGTCGT 62.682 66.667 0.00 0.00 33.98 4.34
8119 11469 2.432628 CGGGTGCCTTCAGTCGTC 60.433 66.667 0.00 0.00 0.00 4.20
8120 11470 2.741092 GGGTGCCTTCAGTCGTCA 59.259 61.111 0.00 0.00 0.00 4.35
8129 11479 0.529773 TTCAGTCGTCAAGCAACGCT 60.530 50.000 1.90 0.00 42.31 5.07
8132 11482 0.319900 AGTCGTCAAGCAACGCTGAT 60.320 50.000 0.00 0.00 42.31 2.90
8136 11486 2.411748 TCGTCAAGCAACGCTGATAAAG 59.588 45.455 0.00 0.00 42.31 1.85
8156 11506 1.975407 GGTGCTGCAACAGATGGCT 60.975 57.895 13.80 0.00 32.44 4.75
8164 11514 1.097547 CAACAGATGGCTTAGGGCGG 61.098 60.000 0.00 0.00 42.94 6.13
8173 11528 1.592669 CTTAGGGCGGTGCGATGAG 60.593 63.158 0.00 0.00 0.00 2.90
8207 11562 2.607750 ACCTCCATGCACCCGAGT 60.608 61.111 0.00 0.00 0.00 4.18
8208 11563 1.305802 ACCTCCATGCACCCGAGTA 60.306 57.895 0.00 0.00 0.00 2.59
8252 11625 1.588824 ATCAGGGTGTGCATGCGTTG 61.589 55.000 14.09 5.02 0.00 4.10
8305 11679 2.482374 GCGTGCATGCTGTCCTTC 59.518 61.111 23.72 0.00 0.00 3.46
8323 11697 2.427245 CGTGTGTGCATGCGTTGG 60.427 61.111 14.09 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.080319 AGAAGATCAAGGCTGAAGTTGC 58.920 45.455 0.00 0.00 34.49 4.17
5 6 4.530161 AGTACAGAAGATCAAGGCTGAAGT 59.470 41.667 9.97 0.00 34.49 3.01
6 7 5.083533 AGTACAGAAGATCAAGGCTGAAG 57.916 43.478 9.97 0.00 34.49 3.02
8 9 4.348486 AGAGTACAGAAGATCAAGGCTGA 58.652 43.478 9.97 0.00 35.56 4.26
9 10 4.734398 AGAGTACAGAAGATCAAGGCTG 57.266 45.455 0.00 0.00 34.65 4.85
10 11 5.623368 CGAAAGAGTACAGAAGATCAAGGCT 60.623 44.000 0.00 0.00 0.00 4.58
11 12 4.564769 CGAAAGAGTACAGAAGATCAAGGC 59.435 45.833 0.00 0.00 0.00 4.35
12 13 5.955488 TCGAAAGAGTACAGAAGATCAAGG 58.045 41.667 0.00 0.00 34.84 3.61
24 25 6.833608 TCCAGTCAGGTGATCGAAAGAGTAC 61.834 48.000 0.00 0.00 40.86 2.73
25 26 4.809691 TCCAGTCAGGTGATCGAAAGAGTA 60.810 45.833 0.00 0.00 40.86 2.59
26 27 4.067128 TCCAGTCAGGTGATCGAAAGAGT 61.067 47.826 0.00 0.00 40.86 3.24
27 28 2.493675 TCCAGTCAGGTGATCGAAAGAG 59.506 50.000 0.00 0.00 40.86 2.85
28 29 2.493675 CTCCAGTCAGGTGATCGAAAGA 59.506 50.000 0.00 0.00 41.52 2.52
29 30 2.417924 CCTCCAGTCAGGTGATCGAAAG 60.418 54.545 0.00 0.00 39.02 2.62
136 137 2.501723 AGTACCCCAGACTTATGCACAG 59.498 50.000 0.00 0.00 0.00 3.66
380 382 5.702670 CACATGGATATCGGAAACAATAGCT 59.297 40.000 0.00 0.00 0.00 3.32
429 595 9.689501 CCTGGAGGGTAACTAAATATTGTAAAA 57.310 33.333 0.00 0.00 0.00 1.52
430 596 7.776500 GCCTGGAGGGTAACTAAATATTGTAAA 59.224 37.037 0.00 0.00 37.43 2.01
431 597 7.128263 AGCCTGGAGGGTAACTAAATATTGTAA 59.872 37.037 0.00 0.00 45.38 2.41
565 733 5.878116 TCGTAAGGTCAGTGAATTAATTGGG 59.122 40.000 5.17 0.00 38.47 4.12
680 848 4.453136 GGGTTGCATACGTTTAACAAGAGA 59.547 41.667 0.00 0.00 0.00 3.10
719 887 3.994392 GACTTGGCTCGTCAATTACTTGA 59.006 43.478 0.00 0.00 39.07 3.02
744 912 9.884465 GGATAAACACATATTGAATGCTAAGTC 57.116 33.333 0.00 0.00 0.00 3.01
745 913 9.407380 TGGATAAACACATATTGAATGCTAAGT 57.593 29.630 0.00 0.00 0.00 2.24
869 2249 7.503566 AGAGAAGATGAGATTTAGAGACCAGAG 59.496 40.741 0.00 0.00 0.00 3.35
1043 2490 2.038557 GGGGAAAAGAAAGGAAAAGGGC 59.961 50.000 0.00 0.00 0.00 5.19
1186 2633 0.687354 AGGAGTTGTGGTGGTAGCTG 59.313 55.000 0.00 0.00 0.00 4.24
1399 2846 5.048991 GTGTACCAAATCCACCTTAACACAG 60.049 44.000 0.00 0.00 35.83 3.66
1437 2884 3.738590 GCTCTCAACCGAATCTAGGGTTC 60.739 52.174 0.00 0.00 44.46 3.62
1593 3040 5.785940 ACCAGTTCCCTGAGAGTACTATTTT 59.214 40.000 0.00 0.00 41.50 1.82
1671 3118 5.046663 GGGAGCAACCTCATTTTAAATGGAA 60.047 40.000 16.42 0.00 39.96 3.53
1672 3119 4.466015 GGGAGCAACCTCATTTTAAATGGA 59.534 41.667 16.42 4.27 39.96 3.41
1959 3434 8.131455 TGATTCTTACGAGCAAACAGAATATC 57.869 34.615 0.00 0.00 34.92 1.63
1962 3437 6.801539 TTGATTCTTACGAGCAAACAGAAT 57.198 33.333 0.00 0.00 36.99 2.40
2007 3482 7.009540 GCATCATAATTTACAGGTGAAAACAGC 59.990 37.037 0.00 0.00 0.00 4.40
2061 3536 8.647143 TCTTTCAATTCCATCTCAACAAAAAC 57.353 30.769 0.00 0.00 0.00 2.43
2099 3574 1.337071 AGATACACGGTCCGCATACAG 59.663 52.381 12.28 0.00 0.00 2.74
2146 3628 6.183360 CCTGTGTTGTGTAAAACCAAACAATG 60.183 38.462 0.00 0.00 0.00 2.82
2181 3663 7.331026 TCCTCTCAGATGTAAATTACACAAGG 58.669 38.462 8.12 8.84 42.23 3.61
2293 3775 9.388506 CTCAAGAGTATTTGAGTAACATCCAAT 57.611 33.333 7.43 0.00 45.70 3.16
2467 3949 5.188434 TCCAGTGCATTCTTAAGGATCAAG 58.812 41.667 1.85 0.00 0.00 3.02
2978 4460 3.127721 GCCTGTCTTATCTTCACCTTTGC 59.872 47.826 0.00 0.00 0.00 3.68
2981 4463 3.620966 GCAGCCTGTCTTATCTTCACCTT 60.621 47.826 0.00 0.00 0.00 3.50
3031 4513 4.448060 GTGGCCAGCTTATCGTAATAAGTC 59.552 45.833 5.11 0.00 44.21 3.01
3175 4657 5.768662 AGCTGTAAACTCACTACTGTACTCA 59.231 40.000 0.00 0.00 0.00 3.41
3932 5414 9.778741 GAGTTCCATCATAATTACTGGTATCAA 57.221 33.333 9.30 0.00 0.00 2.57
4348 5830 2.616960 GTCATGATGCCGTCACAGTAA 58.383 47.619 0.00 0.00 40.28 2.24
4471 5953 7.333269 GCATCGCATAGATCAAATACTTATCG 58.667 38.462 0.00 0.00 37.52 2.92
4474 5956 5.874810 GGGCATCGCATAGATCAAATACTTA 59.125 40.000 0.00 0.00 37.52 2.24
4538 6020 2.740904 CGAGCATTTCCTCATCAGCTGA 60.741 50.000 20.79 20.79 31.61 4.26
5191 6804 1.949465 AGTGAAAGGGTTGACACGAC 58.051 50.000 0.00 0.00 38.15 4.34
5621 8262 5.244755 AGTTCACCAACACAAAAATTTGCT 58.755 33.333 5.82 0.00 41.79 3.91
5729 8391 7.643764 ACATTTCATAGAACAACAAAAGTGACG 59.356 33.333 0.00 0.00 0.00 4.35
5750 8412 8.336806 CAATTCAAGTGCAAACAACATACATTT 58.663 29.630 0.00 0.00 0.00 2.32
5971 8663 8.552034 AGAAAATTATCGTGCTTAACTATGAGC 58.448 33.333 0.00 0.00 38.59 4.26
6602 9306 2.799126 AACGGATCCATAAGCAACCA 57.201 45.000 13.41 0.00 0.00 3.67
6663 9367 1.203187 ACTTGGACCTCCTGAGCAGTA 60.203 52.381 0.00 0.00 36.82 2.74
6764 9468 2.857592 GCAGGACAATGCAAGTATGG 57.142 50.000 0.00 0.00 45.77 2.74
6813 9517 2.688507 GTCGAAGCTTTGACCATGAGA 58.311 47.619 29.55 0.00 35.90 3.27
6817 9521 1.298859 GCCGTCGAAGCTTTGACCAT 61.299 55.000 32.02 0.00 38.16 3.55
6838 9542 2.594592 GGGTCTTGCACAACGGCT 60.595 61.111 0.00 0.00 34.04 5.52
7016 9726 8.795842 ATACAGTTCCCGTAAATAACAAATCA 57.204 30.769 0.00 0.00 0.00 2.57
7167 10443 8.906867 CCTCAACTTCAATGACCATAATTGTAT 58.093 33.333 0.00 0.00 36.58 2.29
7168 10444 7.888021 ACCTCAACTTCAATGACCATAATTGTA 59.112 33.333 0.00 0.00 36.58 2.41
7169 10445 6.721208 ACCTCAACTTCAATGACCATAATTGT 59.279 34.615 0.00 0.00 36.58 2.71
7170 10446 7.094248 TGACCTCAACTTCAATGACCATAATTG 60.094 37.037 0.00 0.00 36.54 2.32
7171 10447 6.947733 TGACCTCAACTTCAATGACCATAATT 59.052 34.615 0.00 0.00 0.00 1.40
7172 10448 6.484288 TGACCTCAACTTCAATGACCATAAT 58.516 36.000 0.00 0.00 0.00 1.28
7173 10449 5.875224 TGACCTCAACTTCAATGACCATAA 58.125 37.500 0.00 0.00 0.00 1.90
7174 10450 5.497464 TGACCTCAACTTCAATGACCATA 57.503 39.130 0.00 0.00 0.00 2.74
7175 10451 4.371624 TGACCTCAACTTCAATGACCAT 57.628 40.909 0.00 0.00 0.00 3.55
7176 10452 3.855255 TGACCTCAACTTCAATGACCA 57.145 42.857 0.00 0.00 0.00 4.02
7177 10453 4.557496 GCTTTGACCTCAACTTCAATGACC 60.557 45.833 0.00 0.00 35.28 4.02
7178 10454 4.036734 TGCTTTGACCTCAACTTCAATGAC 59.963 41.667 0.00 0.00 35.28 3.06
7179 10455 4.036734 GTGCTTTGACCTCAACTTCAATGA 59.963 41.667 0.00 0.00 35.28 2.57
7180 10456 4.202040 TGTGCTTTGACCTCAACTTCAATG 60.202 41.667 0.00 0.00 35.28 2.82
7181 10457 3.953612 TGTGCTTTGACCTCAACTTCAAT 59.046 39.130 0.00 0.00 35.28 2.57
7182 10458 3.351740 TGTGCTTTGACCTCAACTTCAA 58.648 40.909 0.00 0.00 35.28 2.69
7183 10459 2.997980 TGTGCTTTGACCTCAACTTCA 58.002 42.857 0.00 0.00 35.28 3.02
7184 10460 4.574599 ATTGTGCTTTGACCTCAACTTC 57.425 40.909 0.00 0.00 35.28 3.01
7185 10461 4.024048 CGTATTGTGCTTTGACCTCAACTT 60.024 41.667 0.00 0.00 35.28 2.66
7186 10462 3.498397 CGTATTGTGCTTTGACCTCAACT 59.502 43.478 0.00 0.00 35.28 3.16
7187 10463 3.496884 TCGTATTGTGCTTTGACCTCAAC 59.503 43.478 0.00 0.00 35.28 3.18
7188 10464 3.734463 TCGTATTGTGCTTTGACCTCAA 58.266 40.909 0.00 0.00 0.00 3.02
7189 10465 3.394674 TCGTATTGTGCTTTGACCTCA 57.605 42.857 0.00 0.00 0.00 3.86
7190 10466 5.581085 AGTTATCGTATTGTGCTTTGACCTC 59.419 40.000 0.00 0.00 0.00 3.85
7191 10467 5.351465 CAGTTATCGTATTGTGCTTTGACCT 59.649 40.000 0.00 0.00 0.00 3.85
7192 10468 5.447279 CCAGTTATCGTATTGTGCTTTGACC 60.447 44.000 0.00 0.00 0.00 4.02
7193 10469 5.350365 TCCAGTTATCGTATTGTGCTTTGAC 59.650 40.000 0.00 0.00 0.00 3.18
7194 10470 5.350365 GTCCAGTTATCGTATTGTGCTTTGA 59.650 40.000 0.00 0.00 0.00 2.69
7195 10471 5.351465 AGTCCAGTTATCGTATTGTGCTTTG 59.649 40.000 0.00 0.00 0.00 2.77
7196 10472 5.488341 AGTCCAGTTATCGTATTGTGCTTT 58.512 37.500 0.00 0.00 0.00 3.51
7197 10473 5.086104 AGTCCAGTTATCGTATTGTGCTT 57.914 39.130 0.00 0.00 0.00 3.91
7198 10474 4.737855 AGTCCAGTTATCGTATTGTGCT 57.262 40.909 0.00 0.00 0.00 4.40
7199 10475 4.868171 TGAAGTCCAGTTATCGTATTGTGC 59.132 41.667 0.00 0.00 0.00 4.57
7200 10476 6.330278 TCTGAAGTCCAGTTATCGTATTGTG 58.670 40.000 0.00 0.00 43.38 3.33
7201 10477 6.525578 TCTGAAGTCCAGTTATCGTATTGT 57.474 37.500 0.00 0.00 43.38 2.71
7202 10478 9.698309 ATATTCTGAAGTCCAGTTATCGTATTG 57.302 33.333 0.00 0.00 43.38 1.90
7203 10479 9.698309 CATATTCTGAAGTCCAGTTATCGTATT 57.302 33.333 0.00 0.00 43.38 1.89
7204 10480 7.815068 GCATATTCTGAAGTCCAGTTATCGTAT 59.185 37.037 0.00 0.00 43.38 3.06
7205 10481 7.014326 AGCATATTCTGAAGTCCAGTTATCGTA 59.986 37.037 0.00 0.00 43.38 3.43
7206 10482 5.986135 GCATATTCTGAAGTCCAGTTATCGT 59.014 40.000 0.00 0.00 43.38 3.73
7207 10483 6.219473 AGCATATTCTGAAGTCCAGTTATCG 58.781 40.000 0.00 0.00 43.38 2.92
7208 10484 7.212976 TGAGCATATTCTGAAGTCCAGTTATC 58.787 38.462 0.00 0.00 43.38 1.75
7209 10485 7.129457 TGAGCATATTCTGAAGTCCAGTTAT 57.871 36.000 0.00 0.00 43.38 1.89
7210 10486 6.544928 TGAGCATATTCTGAAGTCCAGTTA 57.455 37.500 0.00 0.00 43.38 2.24
7211 10487 5.426689 TGAGCATATTCTGAAGTCCAGTT 57.573 39.130 0.00 0.00 43.38 3.16
7212 10488 5.426689 TTGAGCATATTCTGAAGTCCAGT 57.573 39.130 0.00 0.00 43.38 4.00
7213 10489 6.145209 CGTATTGAGCATATTCTGAAGTCCAG 59.855 42.308 0.00 0.00 44.27 3.86
7214 10490 5.985530 CGTATTGAGCATATTCTGAAGTCCA 59.014 40.000 0.00 0.00 0.00 4.02
7215 10491 5.406780 CCGTATTGAGCATATTCTGAAGTCC 59.593 44.000 0.00 0.00 0.00 3.85
7216 10492 5.986135 ACCGTATTGAGCATATTCTGAAGTC 59.014 40.000 0.00 0.00 0.00 3.01
7217 10493 5.918608 ACCGTATTGAGCATATTCTGAAGT 58.081 37.500 0.00 0.00 0.00 3.01
7218 10494 5.117745 CGACCGTATTGAGCATATTCTGAAG 59.882 44.000 0.00 0.00 0.00 3.02
7219 10495 4.982295 CGACCGTATTGAGCATATTCTGAA 59.018 41.667 0.00 0.00 0.00 3.02
7220 10496 4.546570 CGACCGTATTGAGCATATTCTGA 58.453 43.478 0.00 0.00 0.00 3.27
7221 10497 3.121944 GCGACCGTATTGAGCATATTCTG 59.878 47.826 0.00 0.00 0.00 3.02
7222 10498 3.005897 AGCGACCGTATTGAGCATATTCT 59.994 43.478 0.00 0.00 0.00 2.40
7223 10499 3.318017 AGCGACCGTATTGAGCATATTC 58.682 45.455 0.00 0.00 0.00 1.75
7224 10500 3.386768 AGCGACCGTATTGAGCATATT 57.613 42.857 0.00 0.00 0.00 1.28
7225 10501 4.514781 TTAGCGACCGTATTGAGCATAT 57.485 40.909 0.00 0.00 0.00 1.78
7226 10502 3.994204 TTAGCGACCGTATTGAGCATA 57.006 42.857 0.00 0.00 0.00 3.14
7227 10503 2.882927 TTAGCGACCGTATTGAGCAT 57.117 45.000 0.00 0.00 0.00 3.79
7228 10504 2.658373 TTTAGCGACCGTATTGAGCA 57.342 45.000 0.00 0.00 0.00 4.26
7229 10505 4.921515 TCATATTTAGCGACCGTATTGAGC 59.078 41.667 0.00 0.00 0.00 4.26
7230 10506 6.150318 ACTCATATTTAGCGACCGTATTGAG 58.850 40.000 0.00 0.00 0.00 3.02
7231 10507 6.080648 ACTCATATTTAGCGACCGTATTGA 57.919 37.500 0.00 0.00 0.00 2.57
7232 10508 6.200286 ACAACTCATATTTAGCGACCGTATTG 59.800 38.462 0.00 0.00 0.00 1.90
7233 10509 6.200286 CACAACTCATATTTAGCGACCGTATT 59.800 38.462 0.00 0.00 0.00 1.89
7234 10510 5.690409 CACAACTCATATTTAGCGACCGTAT 59.310 40.000 0.00 0.00 0.00 3.06
7235 10511 5.038683 CACAACTCATATTTAGCGACCGTA 58.961 41.667 0.00 0.00 0.00 4.02
7236 10512 3.863424 CACAACTCATATTTAGCGACCGT 59.137 43.478 0.00 0.00 0.00 4.83
7237 10513 3.245284 CCACAACTCATATTTAGCGACCG 59.755 47.826 0.00 0.00 0.00 4.79
7238 10514 4.034048 CACCACAACTCATATTTAGCGACC 59.966 45.833 0.00 0.00 0.00 4.79
7239 10515 4.868171 TCACCACAACTCATATTTAGCGAC 59.132 41.667 0.00 0.00 0.00 5.19
7240 10516 5.079689 TCACCACAACTCATATTTAGCGA 57.920 39.130 0.00 0.00 0.00 4.93
7241 10517 5.991328 ATCACCACAACTCATATTTAGCG 57.009 39.130 0.00 0.00 0.00 4.26
7248 10524 9.710900 GTGATCATATAATCACCACAACTCATA 57.289 33.333 7.68 0.00 46.43 2.15
7249 10525 8.613060 GTGATCATATAATCACCACAACTCAT 57.387 34.615 7.68 0.00 46.43 2.90
7260 10536 6.423776 TGTGAGCCAGTGATCATATAATCA 57.576 37.500 0.00 0.00 39.45 2.57
7261 10537 6.964741 CTGTGAGCCAGTGATCATATAATC 57.035 41.667 0.00 0.00 39.45 1.75
7291 10567 1.166129 GCGTCTAGTCTGACCAGTCA 58.834 55.000 3.76 0.00 38.06 3.41
7292 10568 0.452585 GGCGTCTAGTCTGACCAGTC 59.547 60.000 3.76 0.00 33.70 3.51
7293 10569 0.251209 TGGCGTCTAGTCTGACCAGT 60.251 55.000 3.76 0.00 33.70 4.00
7294 10570 0.171455 GTGGCGTCTAGTCTGACCAG 59.829 60.000 3.76 0.00 33.70 4.00
7295 10571 0.251209 AGTGGCGTCTAGTCTGACCA 60.251 55.000 3.76 0.00 33.70 4.02
7296 10572 0.889306 AAGTGGCGTCTAGTCTGACC 59.111 55.000 3.76 0.00 33.70 4.02
7297 10573 2.097791 CCTAAGTGGCGTCTAGTCTGAC 59.902 54.545 0.00 0.00 0.00 3.51
7298 10574 2.026542 TCCTAAGTGGCGTCTAGTCTGA 60.027 50.000 0.00 0.00 35.26 3.27
7299 10575 2.097791 GTCCTAAGTGGCGTCTAGTCTG 59.902 54.545 0.00 0.00 35.26 3.51
7300 10576 2.290768 TGTCCTAAGTGGCGTCTAGTCT 60.291 50.000 0.00 0.00 35.26 3.24
7301 10577 2.089980 TGTCCTAAGTGGCGTCTAGTC 58.910 52.381 0.00 0.00 35.26 2.59
7302 10578 2.093106 CTGTCCTAAGTGGCGTCTAGT 58.907 52.381 0.00 0.00 35.26 2.57
7303 10579 1.202313 GCTGTCCTAAGTGGCGTCTAG 60.202 57.143 0.00 0.00 35.26 2.43
7304 10580 0.815734 GCTGTCCTAAGTGGCGTCTA 59.184 55.000 0.00 0.00 35.26 2.59
7305 10581 1.185618 TGCTGTCCTAAGTGGCGTCT 61.186 55.000 0.00 0.00 35.26 4.18
7306 10582 1.014564 GTGCTGTCCTAAGTGGCGTC 61.015 60.000 0.00 0.00 35.26 5.19
7307 10583 1.004918 GTGCTGTCCTAAGTGGCGT 60.005 57.895 0.00 0.00 35.26 5.68
7308 10584 0.530744 TAGTGCTGTCCTAAGTGGCG 59.469 55.000 0.00 0.00 35.26 5.69
7309 10585 2.289444 TGTTAGTGCTGTCCTAAGTGGC 60.289 50.000 0.00 0.00 35.26 5.01
7310 10586 3.589988 CTGTTAGTGCTGTCCTAAGTGG 58.410 50.000 0.00 0.00 37.10 4.00
7311 10587 2.996621 GCTGTTAGTGCTGTCCTAAGTG 59.003 50.000 0.00 0.00 0.00 3.16
7312 10588 2.352814 CGCTGTTAGTGCTGTCCTAAGT 60.353 50.000 0.00 0.00 0.00 2.24
7313 10589 2.263077 CGCTGTTAGTGCTGTCCTAAG 58.737 52.381 0.00 0.00 0.00 2.18
7314 10590 1.067142 CCGCTGTTAGTGCTGTCCTAA 60.067 52.381 0.00 0.00 0.00 2.69
7315 10591 0.530744 CCGCTGTTAGTGCTGTCCTA 59.469 55.000 0.00 0.00 0.00 2.94
7316 10592 1.293498 CCGCTGTTAGTGCTGTCCT 59.707 57.895 0.00 0.00 0.00 3.85
7317 10593 0.245539 TACCGCTGTTAGTGCTGTCC 59.754 55.000 0.00 0.00 0.00 4.02
7318 10594 1.336517 TGTACCGCTGTTAGTGCTGTC 60.337 52.381 0.00 0.00 0.00 3.51
7319 10595 0.677288 TGTACCGCTGTTAGTGCTGT 59.323 50.000 0.00 0.00 0.00 4.40
7320 10596 1.067846 TCTGTACCGCTGTTAGTGCTG 60.068 52.381 0.00 0.00 0.00 4.41
7321 10597 1.067776 GTCTGTACCGCTGTTAGTGCT 60.068 52.381 0.00 0.00 0.00 4.40
7322 10598 1.067776 AGTCTGTACCGCTGTTAGTGC 60.068 52.381 0.00 0.00 0.00 4.40
7323 10599 2.728225 CGAGTCTGTACCGCTGTTAGTG 60.728 54.545 0.00 0.00 0.00 2.74
7324 10600 1.467734 CGAGTCTGTACCGCTGTTAGT 59.532 52.381 0.00 0.00 0.00 2.24
7325 10601 1.736126 TCGAGTCTGTACCGCTGTTAG 59.264 52.381 0.00 0.00 0.00 2.34
7326 10602 1.812235 TCGAGTCTGTACCGCTGTTA 58.188 50.000 0.00 0.00 0.00 2.41
7327 10603 0.956633 TTCGAGTCTGTACCGCTGTT 59.043 50.000 0.00 0.00 0.00 3.16
7328 10604 0.956633 TTTCGAGTCTGTACCGCTGT 59.043 50.000 0.00 0.00 0.00 4.40
7329 10605 1.337821 GTTTCGAGTCTGTACCGCTG 58.662 55.000 0.00 0.00 0.00 5.18
7330 10606 0.243095 GGTTTCGAGTCTGTACCGCT 59.757 55.000 0.00 0.00 0.00 5.52
7331 10607 0.735287 GGGTTTCGAGTCTGTACCGC 60.735 60.000 0.00 0.00 0.00 5.68
7332 10608 0.108945 GGGGTTTCGAGTCTGTACCG 60.109 60.000 0.00 0.00 0.00 4.02
7333 10609 1.067071 CAGGGGTTTCGAGTCTGTACC 60.067 57.143 0.00 0.00 0.00 3.34
7334 10610 1.891150 TCAGGGGTTTCGAGTCTGTAC 59.109 52.381 0.00 0.00 0.00 2.90
7335 10611 2.168496 CTCAGGGGTTTCGAGTCTGTA 58.832 52.381 0.00 0.00 0.00 2.74
7336 10612 0.969894 CTCAGGGGTTTCGAGTCTGT 59.030 55.000 0.00 0.00 0.00 3.41
7337 10613 0.247736 CCTCAGGGGTTTCGAGTCTG 59.752 60.000 0.00 0.00 0.00 3.51
7338 10614 2.672414 CCTCAGGGGTTTCGAGTCT 58.328 57.895 0.00 0.00 0.00 3.24
7347 10623 2.372981 ACGTTTACGAACCTCAGGGGT 61.373 52.381 9.53 0.00 46.43 4.95
7348 10624 0.319405 ACGTTTACGAACCTCAGGGG 59.681 55.000 9.53 0.00 43.02 4.79
7349 10625 1.706443 GACGTTTACGAACCTCAGGG 58.294 55.000 9.53 0.00 43.02 4.45
7350 10626 1.334054 CGACGTTTACGAACCTCAGG 58.666 55.000 9.53 0.00 43.02 3.86
7351 10627 0.706729 GCGACGTTTACGAACCTCAG 59.293 55.000 9.53 0.00 43.02 3.35
7352 10628 0.998226 CGCGACGTTTACGAACCTCA 60.998 55.000 0.00 0.00 43.02 3.86
7353 10629 1.692729 CGCGACGTTTACGAACCTC 59.307 57.895 0.00 0.00 43.02 3.85
7354 10630 2.367344 GCGCGACGTTTACGAACCT 61.367 57.895 12.10 0.00 43.02 3.50
7355 10631 2.092696 GCGCGACGTTTACGAACC 59.907 61.111 12.10 0.00 43.02 3.62
7356 10632 2.092696 GGCGCGACGTTTACGAAC 59.907 61.111 12.10 2.23 43.02 3.95
7357 10633 2.050168 AGGCGCGACGTTTACGAA 60.050 55.556 12.10 0.00 43.02 3.85
7366 10642 2.508663 GGTGGTTAGAGGCGCGAC 60.509 66.667 12.10 7.34 0.00 5.19
7374 10650 0.599558 CGACGTTCCAGGTGGTTAGA 59.400 55.000 0.00 0.00 36.34 2.10
7382 10658 1.071019 CGACATGACGACGTTCCAGG 61.071 60.000 12.27 0.33 35.09 4.45
7386 10662 1.126079 AACACGACATGACGACGTTC 58.874 50.000 23.72 0.00 43.45 3.95
7388 10664 1.265095 AGTAACACGACATGACGACGT 59.735 47.619 23.72 16.16 46.87 4.34
7395 10671 2.789339 CTCGGCATAGTAACACGACATG 59.211 50.000 0.00 0.00 0.00 3.21
7398 10674 1.402968 TCCTCGGCATAGTAACACGAC 59.597 52.381 0.00 0.00 0.00 4.34
7405 10681 1.691976 CCAATGGTCCTCGGCATAGTA 59.308 52.381 0.00 0.00 0.00 1.82
7407 10683 0.469917 ACCAATGGTCCTCGGCATAG 59.530 55.000 0.00 0.00 0.00 2.23
7410 10686 0.693622 TTAACCAATGGTCCTCGGCA 59.306 50.000 4.95 0.00 33.12 5.69
7422 10698 5.782893 AGCTTATGTGCACTTTTAACCAA 57.217 34.783 19.41 0.96 34.99 3.67
7423 10699 5.182380 GGTAGCTTATGTGCACTTTTAACCA 59.818 40.000 19.41 0.00 34.99 3.67
7425 10701 6.249035 TGGTAGCTTATGTGCACTTTTAAC 57.751 37.500 19.41 7.48 34.99 2.01
7432 10708 4.662145 GAAACATGGTAGCTTATGTGCAC 58.338 43.478 10.75 10.75 37.57 4.57
7434 10710 3.621268 TCGAAACATGGTAGCTTATGTGC 59.379 43.478 10.49 6.60 37.57 4.57
7435 10711 4.629634 TGTCGAAACATGGTAGCTTATGTG 59.370 41.667 10.49 0.73 37.57 3.21
7454 10730 8.286800 TGTGGAAACAAAATTAAGATAGTGTCG 58.713 33.333 0.00 0.00 46.06 4.35
7475 10765 4.588951 ACTTACACAGAGAGAACATGTGGA 59.411 41.667 0.00 0.00 46.74 4.02
7505 10795 1.661178 GCTCGCATGTGTTGTCAACAG 60.661 52.381 18.70 8.67 43.10 3.16
7532 10822 4.160252 ACACACACAAGAAAGCCAGAAAAT 59.840 37.500 0.00 0.00 0.00 1.82
7539 10829 1.798813 GCACACACACACAAGAAAGCC 60.799 52.381 0.00 0.00 0.00 4.35
7540 10830 1.548986 GCACACACACACAAGAAAGC 58.451 50.000 0.00 0.00 0.00 3.51
7545 10835 1.583451 GCACGCACACACACACAAG 60.583 57.895 0.00 0.00 0.00 3.16
7606 10904 8.635765 ACATATTACACACTCACAGGAAAAAT 57.364 30.769 0.00 0.00 0.00 1.82
7610 10908 6.530120 ACAACATATTACACACTCACAGGAA 58.470 36.000 0.00 0.00 0.00 3.36
7612 10910 7.465916 GCATACAACATATTACACACTCACAGG 60.466 40.741 0.00 0.00 0.00 4.00
7628 10926 5.586243 GGACACTCTAACATGCATACAACAT 59.414 40.000 0.00 0.00 0.00 2.71
7632 10930 3.780902 CGGACACTCTAACATGCATACA 58.219 45.455 0.00 0.00 0.00 2.29
7633 10931 2.540101 GCGGACACTCTAACATGCATAC 59.460 50.000 0.00 0.00 0.00 2.39
7634 10932 2.430694 AGCGGACACTCTAACATGCATA 59.569 45.455 0.00 0.00 0.00 3.14
7635 10933 1.208052 AGCGGACACTCTAACATGCAT 59.792 47.619 0.00 0.00 0.00 3.96
7636 10934 0.608130 AGCGGACACTCTAACATGCA 59.392 50.000 0.00 0.00 0.00 3.96
7637 10935 1.281899 GAGCGGACACTCTAACATGC 58.718 55.000 0.00 0.00 33.69 4.06
7638 10936 1.478510 AGGAGCGGACACTCTAACATG 59.521 52.381 0.00 0.00 36.87 3.21
7728 11050 0.475906 GCAGGAGGCCTATCACCAAT 59.524 55.000 4.42 0.00 36.11 3.16
7782 11104 0.734253 GCGTCGATTGAGACAGCAGT 60.734 55.000 0.00 0.00 40.98 4.40
7783 11105 1.416813 GGCGTCGATTGAGACAGCAG 61.417 60.000 0.00 0.00 40.98 4.24
7784 11106 1.446099 GGCGTCGATTGAGACAGCA 60.446 57.895 0.00 0.00 40.98 4.41
7786 11108 0.926155 CATGGCGTCGATTGAGACAG 59.074 55.000 0.00 0.00 40.98 3.51
7787 11109 0.530288 TCATGGCGTCGATTGAGACA 59.470 50.000 0.00 0.00 40.98 3.41
7790 11112 0.234106 GCATCATGGCGTCGATTGAG 59.766 55.000 0.00 0.00 0.00 3.02
7846 11168 4.504097 GCGAGCAAAAGAAAAACATGAGTT 59.496 37.500 0.00 0.00 40.40 3.01
7885 11207 2.181777 GTCGAGCATGTCAGGCGA 59.818 61.111 3.45 0.00 36.08 5.54
7925 11267 2.105006 TTCAGCAGGTGATCAAGAGC 57.895 50.000 2.40 1.29 34.17 4.09
7941 11283 2.615493 GCTTCTTCGAGGGGTTGATTCA 60.615 50.000 0.00 0.00 0.00 2.57
7995 11345 0.319555 CCGACGACAGGTGACACAAT 60.320 55.000 8.08 0.00 0.00 2.71
8001 11351 1.105167 AGACAACCGACGACAGGTGA 61.105 55.000 0.00 0.00 41.95 4.02
8003 11353 0.879765 CTAGACAACCGACGACAGGT 59.120 55.000 0.00 0.00 45.29 4.00
8045 11395 2.258726 GGTGGGCGACGAAAGCTTT 61.259 57.895 12.53 12.53 34.52 3.51
8051 11401 3.687102 ATGACGGTGGGCGACGAA 61.687 61.111 0.00 0.00 0.00 3.85
8067 11417 2.398554 GCATCGGTGGAACGCACAT 61.399 57.895 0.00 0.00 43.02 3.21
8115 11465 2.073117 TTATCAGCGTTGCTTGACGA 57.927 45.000 11.08 0.00 45.47 4.20
8116 11466 2.411748 TCTTTATCAGCGTTGCTTGACG 59.588 45.455 0.00 3.96 45.40 4.35
8117 11467 3.181516 CCTCTTTATCAGCGTTGCTTGAC 60.182 47.826 0.00 0.00 36.40 3.18
8118 11468 3.002791 CCTCTTTATCAGCGTTGCTTGA 58.997 45.455 0.00 0.00 36.40 3.02
8119 11469 2.744202 ACCTCTTTATCAGCGTTGCTTG 59.256 45.455 0.00 0.00 36.40 4.01
8120 11470 2.744202 CACCTCTTTATCAGCGTTGCTT 59.256 45.455 0.00 0.00 36.40 3.91
8129 11479 3.076621 CTGTTGCAGCACCTCTTTATCA 58.923 45.455 0.00 0.00 0.00 2.15
8132 11482 2.928801 TCTGTTGCAGCACCTCTTTA 57.071 45.000 0.00 0.00 0.00 1.85
8136 11486 1.930908 GCCATCTGTTGCAGCACCTC 61.931 60.000 0.00 0.00 0.00 3.85
8156 11506 2.499205 CTCATCGCACCGCCCTAA 59.501 61.111 0.00 0.00 0.00 2.69
8164 11514 2.305405 GATGTCCAGCTCATCGCAC 58.695 57.895 0.00 0.00 42.61 5.34
8180 11535 3.785859 ATGGAGGTGTGCGGCGAT 61.786 61.111 12.98 0.00 0.00 4.58
8222 11579 2.593725 CCCTGATGGCTGATGCGG 60.594 66.667 0.00 0.00 40.82 5.69
8257 11630 1.013431 CATATCACGCACGTGCACG 60.013 57.895 37.03 35.99 45.04 5.34
8261 11634 0.652071 ACATGCATATCACGCACGTG 59.348 50.000 16.73 16.73 43.35 4.49
8273 11646 2.126773 CGCGCACAACACATGCAT 60.127 55.556 8.75 0.00 43.57 3.96
8305 11679 2.427245 CAACGCATGCACACACGG 60.427 61.111 19.57 1.32 0.00 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.