Multiple sequence alignment - TraesCS5B01G088300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G088300 chr5B 100.000 2480 0 0 1 2480 113457854 113455375 0.000000e+00 4580.0
1 TraesCS5B01G088300 chr5B 87.336 687 62 13 843 1508 113328147 113327465 0.000000e+00 763.0
2 TraesCS5B01G088300 chr5B 97.727 88 1 1 2350 2437 113455035 113455121 1.540000e-32 150.0
3 TraesCS5B01G088300 chr5B 79.397 199 22 11 135 329 113449381 113449198 3.350000e-24 122.0
4 TraesCS5B01G088300 chr5B 93.333 75 1 2 2279 2349 113455004 113455078 9.380000e-20 108.0
5 TraesCS5B01G088300 chr5B 88.889 72 1 7 2395 2461 17982704 17982635 5.680000e-12 82.4
6 TraesCS5B01G088300 chr5B 100.000 44 0 0 2306 2349 113455505 113455462 5.680000e-12 82.4
7 TraesCS5B01G088300 chr5B 100.000 44 0 0 2350 2393 113455549 113455506 5.680000e-12 82.4
8 TraesCS5B01G088300 chr5D 90.156 1473 73 29 604 2045 104143350 104141919 0.000000e+00 1851.0
9 TraesCS5B01G088300 chr5D 87.755 686 57 17 843 1508 104113316 104112638 0.000000e+00 776.0
10 TraesCS5B01G088300 chr5D 92.893 394 16 5 7 398 104146075 104145692 1.670000e-156 562.0
11 TraesCS5B01G088300 chr5D 93.607 219 10 2 2135 2349 104141917 104141699 8.550000e-85 324.0
12 TraesCS5B01G088300 chr5D 93.064 173 1 1 445 606 104145693 104145521 2.460000e-60 243.0
13 TraesCS5B01G088300 chr5D 85.417 96 9 2 207 301 104116982 104116891 7.300000e-16 95.3
14 TraesCS5B01G088300 chr5A 91.010 1168 52 19 752 1903 94092136 94093266 0.000000e+00 1526.0
15 TraesCS5B01G088300 chr5A 87.879 660 30 13 7 644 94091040 94091671 0.000000e+00 730.0
16 TraesCS5B01G088300 chr5A 91.667 516 38 4 972 1485 94310774 94311286 0.000000e+00 710.0
17 TraesCS5B01G088300 chr5A 92.655 177 13 0 1869 2045 94093276 94093452 3.170000e-64 255.0
18 TraesCS5B01G088300 chr5A 91.071 112 6 2 2242 2349 94093821 94093932 5.530000e-32 148.0
19 TraesCS5B01G088300 chr5A 91.429 105 9 0 2135 2239 94093454 94093558 7.150000e-31 145.0
20 TraesCS5B01G088300 chr5A 88.679 106 8 4 2347 2452 94093886 94093987 2.590000e-25 126.0
21 TraesCS5B01G088300 chr5A 77.273 198 24 14 140 329 94124354 94124538 2.030000e-16 97.1
22 TraesCS5B01G088300 chr6B 85.207 676 60 23 868 1508 17091811 17091141 0.000000e+00 658.0
23 TraesCS5B01G088300 chr6B 89.918 486 46 2 998 1480 16970590 16971075 7.530000e-175 623.0
24 TraesCS5B01G088300 chr6A 90.741 486 39 3 1001 1480 10138117 10137632 0.000000e+00 643.0
25 TraesCS5B01G088300 chr6D 85.086 637 80 13 855 1480 9147031 9147663 9.670000e-179 636.0
26 TraesCS5B01G088300 chr1B 81.613 310 49 7 1895 2199 467635919 467635613 1.470000e-62 250.0
27 TraesCS5B01G088300 chr7A 80.508 236 42 4 1880 2114 689551398 689551166 7.050000e-41 178.0
28 TraesCS5B01G088300 chr7A 88.235 68 4 4 2386 2452 1755729 1755793 7.350000e-11 78.7
29 TraesCS5B01G088300 chr7B 96.226 53 0 2 2394 2445 428966936 428966885 4.390000e-13 86.1
30 TraesCS5B01G088300 chr3D 92.188 64 0 5 2388 2449 516901097 516901157 4.390000e-13 86.1
31 TraesCS5B01G088300 chr3B 90.769 65 2 4 2382 2445 551513869 551513930 1.580000e-12 84.2
32 TraesCS5B01G088300 chr1A 88.000 75 4 5 2401 2474 399505856 399505786 1.580000e-12 84.2
33 TraesCS5B01G088300 chrUn 88.235 68 4 4 2386 2452 284001413 284001349 7.350000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G088300 chr5B 113455375 113457854 2479 True 1581.600000 4580 100.000000 1 2480 3 chr5B.!!$R4 2479
1 TraesCS5B01G088300 chr5B 113327465 113328147 682 True 763.000000 763 87.336000 843 1508 1 chr5B.!!$R2 665
2 TraesCS5B01G088300 chr5D 104141699 104146075 4376 True 745.000000 1851 92.430000 7 2349 4 chr5D.!!$R2 2342
3 TraesCS5B01G088300 chr5D 104112638 104116982 4344 True 435.650000 776 86.586000 207 1508 2 chr5D.!!$R1 1301
4 TraesCS5B01G088300 chr5A 94310774 94311286 512 False 710.000000 710 91.667000 972 1485 1 chr5A.!!$F2 513
5 TraesCS5B01G088300 chr5A 94091040 94093987 2947 False 488.333333 1526 90.453833 7 2452 6 chr5A.!!$F3 2445
6 TraesCS5B01G088300 chr6B 17091141 17091811 670 True 658.000000 658 85.207000 868 1508 1 chr6B.!!$R1 640
7 TraesCS5B01G088300 chr6D 9147031 9147663 632 False 636.000000 636 85.086000 855 1480 1 chr6D.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.685097 AATATCTGCACGCCCGGTAT 59.315 50.0 0.0 0.0 0.0 2.73 F
84 85 0.741574 TGCACGCCCGGTATAAACTG 60.742 55.0 0.0 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1134 6819 0.319211 TGTTCGAGACCGCGTTGATT 60.319 50.0 4.92 0.0 35.37 2.57 R
2079 7811 0.317770 CGTGCCGCAACTTGTTTCAT 60.318 50.0 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.102615 AGGGAGTATTTGCAATCCAACCTATA 59.897 38.462 16.62 0.00 33.24 1.31
32 33 1.873591 GCAATCCAACCTATACCTGCG 59.126 52.381 0.00 0.00 0.00 5.18
47 48 4.002906 ACCTGCGATCTTTCTACAAACA 57.997 40.909 0.00 0.00 0.00 2.83
58 59 6.779860 TCTTTCTACAAACAGGCCTAGAATT 58.220 36.000 3.98 0.00 0.00 2.17
59 60 7.913789 TCTTTCTACAAACAGGCCTAGAATTA 58.086 34.615 3.98 0.00 0.00 1.40
60 61 8.380099 TCTTTCTACAAACAGGCCTAGAATTAA 58.620 33.333 3.98 0.00 0.00 1.40
61 62 9.178758 CTTTCTACAAACAGGCCTAGAATTAAT 57.821 33.333 3.98 0.00 0.00 1.40
64 65 9.998106 TCTACAAACAGGCCTAGAATTAATATC 57.002 33.333 3.98 0.00 0.00 1.63
70 71 5.349817 CAGGCCTAGAATTAATATCTGCACG 59.650 44.000 3.98 0.00 0.00 5.34
78 79 0.685097 AATATCTGCACGCCCGGTAT 59.315 50.000 0.00 0.00 0.00 2.73
84 85 0.741574 TGCACGCCCGGTATAAACTG 60.742 55.000 0.00 0.00 0.00 3.16
167 169 3.792716 GGAAAAGCACACATTCCCG 57.207 52.632 0.00 0.00 37.28 5.14
292 302 1.933853 CACTAGGCCGTGTCTTTATGC 59.066 52.381 0.00 0.00 0.00 3.14
374 384 0.973632 TCCTGCTCGGCTTTTCAGTA 59.026 50.000 0.00 0.00 0.00 2.74
375 385 1.066858 TCCTGCTCGGCTTTTCAGTAG 60.067 52.381 0.00 0.00 0.00 2.57
429 439 8.340618 CATGAACTATGGGGTAAAATATGGAG 57.659 38.462 0.00 0.00 32.95 3.86
430 440 6.848069 TGAACTATGGGGTAAAATATGGAGG 58.152 40.000 0.00 0.00 0.00 4.30
431 441 5.256806 ACTATGGGGTAAAATATGGAGGC 57.743 43.478 0.00 0.00 0.00 4.70
432 442 4.667858 ACTATGGGGTAAAATATGGAGGCA 59.332 41.667 0.00 0.00 0.00 4.75
433 443 4.765195 ATGGGGTAAAATATGGAGGCAT 57.235 40.909 0.00 0.00 0.00 4.40
434 444 4.112634 TGGGGTAAAATATGGAGGCATC 57.887 45.455 0.00 0.00 0.00 3.91
443 453 0.908910 ATGGAGGCATCACGTTGGTA 59.091 50.000 0.00 0.00 0.00 3.25
645 5888 2.141122 ATTTTGTTGCGAGCCACCGG 62.141 55.000 0.00 0.00 0.00 5.28
679 5935 3.120786 GCACGGTAACAGTAACATGTGAC 60.121 47.826 5.04 5.04 34.25 3.67
682 5938 4.052608 CGGTAACAGTAACATGTGACACA 58.947 43.478 15.95 11.41 36.40 3.72
694 5967 3.614399 TGACACACACACACACACA 57.386 47.368 0.00 0.00 0.00 3.72
695 5968 1.152510 TGACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
696 5969 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
697 5970 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
698 5971 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
699 5972 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
700 5973 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
701 5974 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
702 5975 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
703 5976 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
704 5977 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
705 5978 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
706 5979 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
707 5980 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
708 5981 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
709 5982 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
710 5983 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
711 5984 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
815 6433 2.539142 CGTCTTTAGCTCGTCGCACTAT 60.539 50.000 0.00 0.00 42.61 2.12
849 6486 9.334947 AGGTTTAAGTTCTTTAACCTAGTGAAC 57.665 33.333 24.85 0.00 36.15 3.18
879 6516 2.416836 CGGCTACAATCTCGAACCTTCA 60.417 50.000 0.00 0.00 0.00 3.02
959 6623 3.085533 CCACTCTCTCTTCTTCCTCGAA 58.914 50.000 0.00 0.00 0.00 3.71
1134 6819 2.214216 CCACGACCTGAACCTGGGA 61.214 63.158 0.00 0.00 0.00 4.37
1494 7180 6.665248 ACAACCCATAGATGATAGATCGATCA 59.335 38.462 26.47 19.12 40.08 2.92
1508 7194 1.030457 CGATCAACCGCCTACCTAGT 58.970 55.000 0.00 0.00 0.00 2.57
1509 7195 2.158769 TCGATCAACCGCCTACCTAGTA 60.159 50.000 0.00 0.00 0.00 1.82
1510 7196 2.620115 CGATCAACCGCCTACCTAGTAA 59.380 50.000 0.00 0.00 0.00 2.24
1511 7197 3.549625 CGATCAACCGCCTACCTAGTAAC 60.550 52.174 0.00 0.00 0.00 2.50
1512 7198 1.745087 TCAACCGCCTACCTAGTAACG 59.255 52.381 0.00 0.00 0.00 3.18
1513 7199 1.474077 CAACCGCCTACCTAGTAACGT 59.526 52.381 0.00 0.00 0.00 3.99
1514 7200 2.682856 CAACCGCCTACCTAGTAACGTA 59.317 50.000 0.00 0.00 0.00 3.57
1515 7201 2.289565 ACCGCCTACCTAGTAACGTAC 58.710 52.381 0.00 0.00 0.00 3.67
1516 7202 2.092914 ACCGCCTACCTAGTAACGTACT 60.093 50.000 0.00 0.00 42.68 2.73
1631 7319 1.271379 AGTCGTGCAGTGTCGGATTTA 59.729 47.619 9.23 0.00 0.00 1.40
1664 7354 9.793252 AACTACTATTTTGTGGTACGTACTATG 57.207 33.333 24.07 7.48 31.45 2.23
1665 7355 8.960591 ACTACTATTTTGTGGTACGTACTATGT 58.039 33.333 24.07 11.91 29.89 2.29
1709 7401 6.547930 GGGAAGACCTCTCTTTTATACAGT 57.452 41.667 0.00 0.00 36.82 3.55
1710 7402 7.657023 GGGAAGACCTCTCTTTTATACAGTA 57.343 40.000 0.00 0.00 36.82 2.74
1745 7437 5.823209 AAACAAAGTATACATAACGGCCC 57.177 39.130 5.50 0.00 0.00 5.80
1750 7442 2.961062 AGTATACATAACGGCCCGAGTT 59.039 45.455 11.71 0.00 35.75 3.01
1778 7470 8.451908 GAGCCACTTTGGTTCAAGTATATATT 57.548 34.615 4.33 0.00 45.67 1.28
1779 7471 8.823220 AGCCACTTTGGTTCAAGTATATATTT 57.177 30.769 0.00 0.00 40.46 1.40
1780 7472 8.686334 AGCCACTTTGGTTCAAGTATATATTTG 58.314 33.333 10.85 10.85 40.46 2.32
1884 7616 0.109342 CCCTCTCCATGGGGATTTCG 59.891 60.000 16.66 2.76 45.18 3.46
1934 7666 0.604578 ATCATGTTTGGCTGCCACAC 59.395 50.000 26.80 26.80 35.04 3.82
1946 7678 2.271800 CTGCCACACCGATTTCTAGAC 58.728 52.381 0.00 0.00 0.00 2.59
1990 7722 2.224161 TTGGCTACCATTTTGGCAACAC 60.224 45.455 0.00 0.00 42.67 3.32
2013 7745 7.012327 ACACTTGATAAATCCACACATAATCCG 59.988 37.037 0.00 0.00 0.00 4.18
2045 7777 3.669536 TGAACTTCATAATGCACGGACA 58.330 40.909 0.00 0.00 0.00 4.02
2046 7778 4.260985 TGAACTTCATAATGCACGGACAT 58.739 39.130 0.00 0.00 0.00 3.06
2047 7779 4.332543 TGAACTTCATAATGCACGGACATC 59.667 41.667 0.00 0.00 0.00 3.06
2048 7780 3.872696 ACTTCATAATGCACGGACATCA 58.127 40.909 0.00 0.00 0.00 3.07
2049 7781 4.454678 ACTTCATAATGCACGGACATCAT 58.545 39.130 0.00 0.00 0.00 2.45
2050 7782 4.512944 ACTTCATAATGCACGGACATCATC 59.487 41.667 0.00 0.00 0.00 2.92
2051 7783 4.341366 TCATAATGCACGGACATCATCT 57.659 40.909 0.00 0.00 0.00 2.90
2052 7784 4.707105 TCATAATGCACGGACATCATCTT 58.293 39.130 0.00 0.00 0.00 2.40
2053 7785 5.125356 TCATAATGCACGGACATCATCTTT 58.875 37.500 0.00 0.00 0.00 2.52
2054 7786 5.237127 TCATAATGCACGGACATCATCTTTC 59.763 40.000 0.00 0.00 0.00 2.62
2055 7787 1.737838 TGCACGGACATCATCTTTCC 58.262 50.000 0.00 0.00 0.00 3.13
2056 7788 1.003003 TGCACGGACATCATCTTTCCA 59.997 47.619 0.00 0.00 0.00 3.53
2057 7789 2.083774 GCACGGACATCATCTTTCCAA 58.916 47.619 0.00 0.00 0.00 3.53
2058 7790 2.487762 GCACGGACATCATCTTTCCAAA 59.512 45.455 0.00 0.00 0.00 3.28
2059 7791 3.129287 GCACGGACATCATCTTTCCAAAT 59.871 43.478 0.00 0.00 0.00 2.32
2060 7792 4.335315 GCACGGACATCATCTTTCCAAATA 59.665 41.667 0.00 0.00 0.00 1.40
2061 7793 5.009010 GCACGGACATCATCTTTCCAAATAT 59.991 40.000 0.00 0.00 0.00 1.28
2062 7794 6.460123 GCACGGACATCATCTTTCCAAATATT 60.460 38.462 0.00 0.00 0.00 1.28
2063 7795 7.483307 CACGGACATCATCTTTCCAAATATTT 58.517 34.615 0.00 0.00 0.00 1.40
2064 7796 8.620416 CACGGACATCATCTTTCCAAATATTTA 58.380 33.333 0.00 0.00 0.00 1.40
2065 7797 9.184523 ACGGACATCATCTTTCCAAATATTTAA 57.815 29.630 0.00 0.00 0.00 1.52
2066 7798 9.450807 CGGACATCATCTTTCCAAATATTTAAC 57.549 33.333 0.00 0.00 0.00 2.01
2075 7807 9.598517 TCTTTCCAAATATTTAACATTCATGCC 57.401 29.630 0.00 0.00 0.00 4.40
2076 7808 9.381033 CTTTCCAAATATTTAACATTCATGCCA 57.619 29.630 0.00 0.00 0.00 4.92
2077 7809 9.730705 TTTCCAAATATTTAACATTCATGCCAA 57.269 25.926 0.00 0.00 0.00 4.52
2078 7810 8.715191 TCCAAATATTTAACATTCATGCCAAC 57.285 30.769 0.00 0.00 0.00 3.77
2079 7811 8.316946 TCCAAATATTTAACATTCATGCCAACA 58.683 29.630 0.00 0.00 0.00 3.33
2080 7812 9.111613 CCAAATATTTAACATTCATGCCAACAT 57.888 29.630 0.00 0.00 36.79 2.71
2092 7824 2.548875 TGCCAACATGAAACAAGTTGC 58.451 42.857 12.33 9.39 40.34 4.17
2093 7825 1.522258 GCCAACATGAAACAAGTTGCG 59.478 47.619 12.33 8.31 40.34 4.85
2094 7826 2.126467 CCAACATGAAACAAGTTGCGG 58.874 47.619 12.33 0.04 40.34 5.69
2095 7827 1.522258 CAACATGAAACAAGTTGCGGC 59.478 47.619 1.81 0.00 36.53 6.53
2096 7828 0.743688 ACATGAAACAAGTTGCGGCA 59.256 45.000 1.81 0.00 0.00 5.69
2097 7829 1.130955 CATGAAACAAGTTGCGGCAC 58.869 50.000 0.05 0.00 0.00 5.01
2116 7848 6.007936 GGCACGCCATATTTCATATAAACA 57.992 37.500 2.36 0.00 35.81 2.83
2117 7849 6.086222 GGCACGCCATATTTCATATAAACAG 58.914 40.000 2.36 0.00 35.81 3.16
2118 7850 6.072728 GGCACGCCATATTTCATATAAACAGA 60.073 38.462 2.36 0.00 35.81 3.41
2119 7851 7.359595 GCACGCCATATTTCATATAAACAGAA 58.640 34.615 0.00 0.00 0.00 3.02
2120 7852 7.535258 GCACGCCATATTTCATATAAACAGAAG 59.465 37.037 0.00 0.00 0.00 2.85
2121 7853 7.535258 CACGCCATATTTCATATAAACAGAAGC 59.465 37.037 0.00 0.00 0.00 3.86
2122 7854 7.445402 ACGCCATATTTCATATAAACAGAAGCT 59.555 33.333 0.00 0.00 0.00 3.74
2123 7855 7.959651 CGCCATATTTCATATAAACAGAAGCTC 59.040 37.037 0.00 0.00 0.00 4.09
2124 7856 8.239998 GCCATATTTCATATAAACAGAAGCTCC 58.760 37.037 0.00 0.00 0.00 4.70
2125 7857 9.288576 CCATATTTCATATAAACAGAAGCTCCA 57.711 33.333 0.00 0.00 0.00 3.86
2132 7864 9.679661 TCATATAAACAGAAGCTCCATAAAACA 57.320 29.630 0.00 0.00 0.00 2.83
2133 7865 9.722056 CATATAAACAGAAGCTCCATAAAACAC 57.278 33.333 0.00 0.00 0.00 3.32
2239 8231 7.112452 AGGTTCAAAGCTTCAAAGTTTGTAT 57.888 32.000 15.08 0.00 31.69 2.29
2258 8250 3.825908 ATTAGGCAAGGTTTGGAAGGA 57.174 42.857 0.00 0.00 0.00 3.36
2288 8280 3.627332 TACATCCAGGGGCGGACCA 62.627 63.158 0.36 0.00 42.91 4.02
2289 8281 4.181010 CATCCAGGGGCGGACCAG 62.181 72.222 0.36 0.00 42.91 4.00
2292 8288 4.410400 CCAGGGGCGGACCAGAAC 62.410 72.222 0.36 0.00 42.91 3.01
2355 8351 8.807948 GGTACCAAGCAATAATATATCCACAT 57.192 34.615 7.15 0.00 0.00 3.21
2356 8352 9.899661 GGTACCAAGCAATAATATATCCACATA 57.100 33.333 7.15 0.00 0.00 2.29
2372 8368 7.574021 ATCCACATATAGACAATACATGGGT 57.426 36.000 0.00 0.00 32.57 4.51
2373 8369 6.768483 TCCACATATAGACAATACATGGGTG 58.232 40.000 0.00 0.00 32.57 4.61
2374 8370 5.939883 CCACATATAGACAATACATGGGTGG 59.060 44.000 0.00 0.00 35.49 4.61
2375 8371 5.939883 CACATATAGACAATACATGGGTGGG 59.060 44.000 0.00 0.00 0.00 4.61
2376 8372 5.610982 ACATATAGACAATACATGGGTGGGT 59.389 40.000 0.00 0.00 0.00 4.51
2377 8373 6.790461 ACATATAGACAATACATGGGTGGGTA 59.210 38.462 0.00 0.00 0.00 3.69
2378 8374 3.926058 AGACAATACATGGGTGGGTAC 57.074 47.619 0.00 0.00 0.00 3.34
2424 8420 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2425 8421 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
2427 8423 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
2428 8424 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
2429 8425 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
2430 8426 6.444633 CCTCCGTAAAGAAATATAAGAGCGA 58.555 40.000 0.00 0.00 0.00 4.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.365472 AGGTTGGATTGCAAATACTCCC 58.635 45.455 13.06 5.55 0.00 4.30
4 5 6.998673 AGGTATAGGTTGGATTGCAAATACTC 59.001 38.462 1.71 0.00 0.00 2.59
5 6 6.772716 CAGGTATAGGTTGGATTGCAAATACT 59.227 38.462 1.71 0.00 0.00 2.12
26 27 3.997021 CTGTTTGTAGAAAGATCGCAGGT 59.003 43.478 0.00 0.00 0.00 4.00
32 33 5.978814 TCTAGGCCTGTTTGTAGAAAGATC 58.021 41.667 17.99 0.00 0.00 2.75
47 48 5.482908 CGTGCAGATATTAATTCTAGGCCT 58.517 41.667 11.78 11.78 0.00 5.19
58 59 1.330234 TACCGGGCGTGCAGATATTA 58.670 50.000 6.32 0.00 0.00 0.98
59 60 0.685097 ATACCGGGCGTGCAGATATT 59.315 50.000 6.32 0.00 0.00 1.28
60 61 1.552578 TATACCGGGCGTGCAGATAT 58.447 50.000 6.32 0.00 0.00 1.63
61 62 1.330234 TTATACCGGGCGTGCAGATA 58.670 50.000 6.32 0.00 0.00 1.98
62 63 0.466543 TTTATACCGGGCGTGCAGAT 59.533 50.000 6.32 0.00 0.00 2.90
63 64 0.460635 GTTTATACCGGGCGTGCAGA 60.461 55.000 6.32 0.00 0.00 4.26
64 65 0.461339 AGTTTATACCGGGCGTGCAG 60.461 55.000 6.32 0.00 0.00 4.41
65 66 0.741574 CAGTTTATACCGGGCGTGCA 60.742 55.000 6.32 0.00 0.00 4.57
70 71 2.713877 TGTTTCCAGTTTATACCGGGC 58.286 47.619 6.32 0.00 0.00 6.13
78 79 2.950781 TGGCCACATGTTTCCAGTTTA 58.049 42.857 0.00 0.00 0.00 2.01
84 85 0.100503 GCGTATGGCCACATGTTTCC 59.899 55.000 8.16 0.24 37.97 3.13
167 169 1.447314 CCCCTACGCTTCGTGGTTC 60.447 63.158 1.77 0.00 41.39 3.62
374 384 0.913205 TCTCTCCGTAGCCTGACTCT 59.087 55.000 0.00 0.00 0.00 3.24
375 385 1.606668 CATCTCTCCGTAGCCTGACTC 59.393 57.143 0.00 0.00 0.00 3.36
416 426 4.134563 ACGTGATGCCTCCATATTTTACC 58.865 43.478 0.00 0.00 0.00 2.85
418 428 4.578516 CCAACGTGATGCCTCCATATTTTA 59.421 41.667 0.00 0.00 0.00 1.52
419 429 3.381272 CCAACGTGATGCCTCCATATTTT 59.619 43.478 0.00 0.00 0.00 1.82
421 431 2.092429 ACCAACGTGATGCCTCCATATT 60.092 45.455 0.00 0.00 0.00 1.28
422 432 1.490490 ACCAACGTGATGCCTCCATAT 59.510 47.619 0.00 0.00 0.00 1.78
423 433 0.908910 ACCAACGTGATGCCTCCATA 59.091 50.000 0.00 0.00 0.00 2.74
424 434 0.908910 TACCAACGTGATGCCTCCAT 59.091 50.000 0.00 0.00 0.00 3.41
425 435 0.036765 GTACCAACGTGATGCCTCCA 60.037 55.000 0.00 0.00 0.00 3.86
426 436 0.249398 AGTACCAACGTGATGCCTCC 59.751 55.000 0.00 0.00 0.00 4.30
427 437 1.359848 CAGTACCAACGTGATGCCTC 58.640 55.000 0.00 0.00 0.00 4.70
428 438 0.673644 GCAGTACCAACGTGATGCCT 60.674 55.000 0.00 0.00 31.83 4.75
429 439 1.644786 GGCAGTACCAACGTGATGCC 61.645 60.000 9.27 9.27 43.47 4.40
430 440 0.673644 AGGCAGTACCAACGTGATGC 60.674 55.000 0.00 0.00 43.14 3.91
431 441 1.337728 TGAGGCAGTACCAACGTGATG 60.338 52.381 0.00 0.00 43.14 3.07
432 442 0.973632 TGAGGCAGTACCAACGTGAT 59.026 50.000 0.00 0.00 43.14 3.06
433 443 0.973632 ATGAGGCAGTACCAACGTGA 59.026 50.000 0.00 0.00 43.14 4.35
434 444 1.078709 CATGAGGCAGTACCAACGTG 58.921 55.000 0.00 0.00 43.14 4.49
653 5896 2.211806 TGTTACTGTTACCGTGCCAAC 58.788 47.619 0.00 0.00 0.00 3.77
654 5897 2.616634 TGTTACTGTTACCGTGCCAA 57.383 45.000 0.00 0.00 0.00 4.52
679 5935 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
682 5938 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
684 5940 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
694 5967 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
695 5968 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
696 5969 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
697 5970 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
698 5971 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
699 5972 2.031245 ACTTTGTGTGTGTGTGTGTGTG 60.031 45.455 0.00 0.00 0.00 3.82
700 5973 2.226330 ACTTTGTGTGTGTGTGTGTGT 58.774 42.857 0.00 0.00 0.00 3.72
701 5974 2.987413 ACTTTGTGTGTGTGTGTGTG 57.013 45.000 0.00 0.00 0.00 3.82
702 5975 3.120477 CGTTACTTTGTGTGTGTGTGTGT 60.120 43.478 0.00 0.00 0.00 3.72
703 5976 3.120477 ACGTTACTTTGTGTGTGTGTGTG 60.120 43.478 0.00 0.00 0.00 3.82
704 5977 3.068560 ACGTTACTTTGTGTGTGTGTGT 58.931 40.909 0.00 0.00 0.00 3.72
705 5978 3.120477 ACACGTTACTTTGTGTGTGTGTG 60.120 43.478 0.00 0.00 46.87 3.82
706 5979 3.068560 ACACGTTACTTTGTGTGTGTGT 58.931 40.909 0.00 0.00 46.87 3.72
707 5980 3.733024 ACACGTTACTTTGTGTGTGTG 57.267 42.857 0.00 0.00 46.87 3.82
849 6486 0.855349 GATTGTAGCCGCGTCTGATG 59.145 55.000 4.92 0.00 0.00 3.07
959 6623 1.507140 TGGTGCTAGGAAATCGGGAT 58.493 50.000 0.00 0.00 0.00 3.85
1080 6765 2.110213 GTCACCTTGTGGCCGTCA 59.890 61.111 0.00 0.00 31.24 4.35
1134 6819 0.319211 TGTTCGAGACCGCGTTGATT 60.319 50.000 4.92 0.00 35.37 2.57
1494 7180 1.839424 ACGTTACTAGGTAGGCGGTT 58.161 50.000 0.00 0.00 0.00 4.44
1512 7198 3.788135 GCAGCAGCTACGTACTACAGTAC 60.788 52.174 9.11 9.11 41.45 2.73
1513 7199 2.353889 GCAGCAGCTACGTACTACAGTA 59.646 50.000 0.00 0.00 37.91 2.74
1514 7200 1.132643 GCAGCAGCTACGTACTACAGT 59.867 52.381 0.00 0.00 37.91 3.55
1515 7201 1.132453 TGCAGCAGCTACGTACTACAG 59.868 52.381 1.76 0.00 42.74 2.74
1516 7202 1.135489 GTGCAGCAGCTACGTACTACA 60.135 52.381 1.76 0.00 42.74 2.74
1631 7319 8.981647 CGTACCACAAAATAGTAGTTAAACTGT 58.018 33.333 0.00 0.00 0.00 3.55
1662 7352 7.824289 CCCTCCGATCATGTATACATTTTACAT 59.176 37.037 15.85 3.64 40.12 2.29
1663 7353 7.015779 TCCCTCCGATCATGTATACATTTTACA 59.984 37.037 15.85 0.00 33.61 2.41
1664 7354 7.383687 TCCCTCCGATCATGTATACATTTTAC 58.616 38.462 15.85 7.20 33.61 2.01
1665 7355 7.547697 TCCCTCCGATCATGTATACATTTTA 57.452 36.000 15.85 5.32 33.61 1.52
1745 7437 2.767505 ACCAAAGTGGCTCTAAACTCG 58.232 47.619 0.00 0.00 42.67 4.18
1750 7442 4.164843 ACTTGAACCAAAGTGGCTCTAA 57.835 40.909 0.00 0.00 42.67 2.10
1804 7496 1.002468 GCATGGCGTACAATCATGGAC 60.002 52.381 16.60 0.00 38.80 4.02
1884 7616 4.283212 TCTGGATTTCCATTCCAACCAAAC 59.717 41.667 0.00 0.00 46.46 2.93
1907 7639 3.189702 GCAGCCAAACATGATTTTTGCAT 59.810 39.130 0.00 0.00 33.37 3.96
1934 7666 8.195436 TGGTAGTTATTTCAGTCTAGAAATCGG 58.805 37.037 5.31 0.00 42.86 4.18
1946 7678 8.840321 CCAAACAGGATATGGTAGTTATTTCAG 58.160 37.037 0.00 0.00 41.22 3.02
1990 7722 7.442364 AGTCGGATTATGTGTGGATTTATCAAG 59.558 37.037 0.00 0.00 0.00 3.02
1999 7731 4.545208 TTGAAGTCGGATTATGTGTGGA 57.455 40.909 0.00 0.00 0.00 4.02
2001 7733 7.304735 TCATTTTTGAAGTCGGATTATGTGTG 58.695 34.615 0.00 0.00 0.00 3.82
2013 7745 9.195411 TGCATTATGAAGTTCATTTTTGAAGTC 57.805 29.630 22.90 7.79 38.26 3.01
2049 7781 9.598517 GGCATGAATGTTAAATATTTGGAAAGA 57.401 29.630 11.05 0.00 0.00 2.52
2050 7782 9.381033 TGGCATGAATGTTAAATATTTGGAAAG 57.619 29.630 11.05 0.00 0.00 2.62
2051 7783 9.730705 TTGGCATGAATGTTAAATATTTGGAAA 57.269 25.926 11.05 0.00 0.00 3.13
2052 7784 9.160496 GTTGGCATGAATGTTAAATATTTGGAA 57.840 29.630 11.05 0.00 0.00 3.53
2053 7785 8.316946 TGTTGGCATGAATGTTAAATATTTGGA 58.683 29.630 11.05 0.00 0.00 3.53
2054 7786 8.489990 TGTTGGCATGAATGTTAAATATTTGG 57.510 30.769 11.05 0.00 0.00 3.28
2071 7803 3.132925 GCAACTTGTTTCATGTTGGCAT 58.867 40.909 21.18 0.00 44.32 4.40
2072 7804 2.548875 GCAACTTGTTTCATGTTGGCA 58.451 42.857 21.18 0.00 44.32 4.92
2073 7805 1.522258 CGCAACTTGTTTCATGTTGGC 59.478 47.619 21.18 15.24 44.32 4.52
2074 7806 2.126467 CCGCAACTTGTTTCATGTTGG 58.874 47.619 21.18 14.50 44.32 3.77
2075 7807 1.522258 GCCGCAACTTGTTTCATGTTG 59.478 47.619 17.89 17.89 45.79 3.33
2076 7808 1.135915 TGCCGCAACTTGTTTCATGTT 59.864 42.857 0.00 0.00 33.11 2.71
2077 7809 0.743688 TGCCGCAACTTGTTTCATGT 59.256 45.000 0.00 0.00 0.00 3.21
2078 7810 1.130955 GTGCCGCAACTTGTTTCATG 58.869 50.000 0.00 0.00 0.00 3.07
2079 7811 0.317770 CGTGCCGCAACTTGTTTCAT 60.318 50.000 0.00 0.00 0.00 2.57
2080 7812 1.063327 CGTGCCGCAACTTGTTTCA 59.937 52.632 0.00 0.00 0.00 2.69
2081 7813 3.902234 CGTGCCGCAACTTGTTTC 58.098 55.556 0.00 0.00 0.00 2.78
2088 7820 6.615685 ATATGAAATATGGCGTGCCGCAAC 62.616 45.833 18.87 5.62 44.82 4.17
2089 7821 4.611289 ATATGAAATATGGCGTGCCGCAA 61.611 43.478 18.87 10.10 44.82 4.85
2090 7822 3.133118 ATATGAAATATGGCGTGCCGCA 61.133 45.455 18.87 0.00 44.82 5.69
2091 7823 1.468520 ATATGAAATATGGCGTGCCGC 59.531 47.619 6.37 10.60 41.41 6.53
2092 7824 4.937696 TTATATGAAATATGGCGTGCCG 57.062 40.909 6.37 0.00 40.40 5.69
2093 7825 6.007936 TGTTTATATGAAATATGGCGTGCC 57.992 37.500 3.30 3.30 40.40 5.01
2094 7826 6.898041 TCTGTTTATATGAAATATGGCGTGC 58.102 36.000 0.00 0.00 40.40 5.34
2095 7827 7.535258 GCTTCTGTTTATATGAAATATGGCGTG 59.465 37.037 0.00 0.00 40.40 5.34
2096 7828 7.445402 AGCTTCTGTTTATATGAAATATGGCGT 59.555 33.333 0.00 0.00 40.40 5.68
2097 7829 7.810658 AGCTTCTGTTTATATGAAATATGGCG 58.189 34.615 0.00 0.00 40.40 5.69
2098 7830 8.239998 GGAGCTTCTGTTTATATGAAATATGGC 58.760 37.037 0.00 0.00 40.40 4.40
2099 7831 9.288576 TGGAGCTTCTGTTTATATGAAATATGG 57.711 33.333 0.00 0.00 40.40 2.74
2106 7838 9.679661 TGTTTTATGGAGCTTCTGTTTATATGA 57.320 29.630 0.00 0.00 0.00 2.15
2107 7839 9.722056 GTGTTTTATGGAGCTTCTGTTTATATG 57.278 33.333 0.00 0.00 0.00 1.78
2108 7840 9.461312 TGTGTTTTATGGAGCTTCTGTTTATAT 57.539 29.630 0.00 0.00 0.00 0.86
2109 7841 8.856153 TGTGTTTTATGGAGCTTCTGTTTATA 57.144 30.769 0.00 0.00 0.00 0.98
2110 7842 7.759489 TGTGTTTTATGGAGCTTCTGTTTAT 57.241 32.000 0.00 0.00 0.00 1.40
2111 7843 7.575414 TTGTGTTTTATGGAGCTTCTGTTTA 57.425 32.000 0.00 0.00 0.00 2.01
2112 7844 6.463995 TTGTGTTTTATGGAGCTTCTGTTT 57.536 33.333 0.00 0.00 0.00 2.83
2113 7845 6.294731 GGATTGTGTTTTATGGAGCTTCTGTT 60.295 38.462 0.00 0.00 0.00 3.16
2114 7846 5.183904 GGATTGTGTTTTATGGAGCTTCTGT 59.816 40.000 0.00 0.00 0.00 3.41
2115 7847 5.183713 TGGATTGTGTTTTATGGAGCTTCTG 59.816 40.000 0.00 0.00 0.00 3.02
2116 7848 5.183904 GTGGATTGTGTTTTATGGAGCTTCT 59.816 40.000 0.00 0.00 0.00 2.85
2117 7849 5.048083 TGTGGATTGTGTTTTATGGAGCTTC 60.048 40.000 0.00 0.00 0.00 3.86
2118 7850 4.832266 TGTGGATTGTGTTTTATGGAGCTT 59.168 37.500 0.00 0.00 0.00 3.74
2119 7851 4.406456 TGTGGATTGTGTTTTATGGAGCT 58.594 39.130 0.00 0.00 0.00 4.09
2120 7852 4.782019 TGTGGATTGTGTTTTATGGAGC 57.218 40.909 0.00 0.00 0.00 4.70
2121 7853 6.764308 AGATGTGGATTGTGTTTTATGGAG 57.236 37.500 0.00 0.00 0.00 3.86
2122 7854 8.642935 TTAAGATGTGGATTGTGTTTTATGGA 57.357 30.769 0.00 0.00 0.00 3.41
2123 7855 9.703892 TTTTAAGATGTGGATTGTGTTTTATGG 57.296 29.630 0.00 0.00 0.00 2.74
2152 7884 6.605471 AGGTGAACATGTCAGTCATAGTTA 57.395 37.500 0.00 0.00 36.74 2.24
2158 7890 3.836365 TGAAGGTGAACATGTCAGTCA 57.164 42.857 0.00 0.00 36.74 3.41
2159 7891 6.621596 GCTTTATGAAGGTGAACATGTCAGTC 60.622 42.308 0.00 0.00 33.25 3.51
2160 7892 5.182001 GCTTTATGAAGGTGAACATGTCAGT 59.818 40.000 0.00 0.00 33.25 3.41
2173 7905 5.807011 GGCTACATTTTGTGCTTTATGAAGG 59.193 40.000 0.00 0.00 33.34 3.46
2239 8231 3.603965 TTCCTTCCAAACCTTGCCTAA 57.396 42.857 0.00 0.00 0.00 2.69
2258 8250 5.690364 GCCCCTGGATGTAGCTAGTATTTTT 60.690 44.000 0.00 0.00 0.00 1.94
2288 8280 3.625745 GACACCGGGTCATTGTTCT 57.374 52.632 6.32 0.00 46.19 3.01
2349 8345 6.239858 CCACCCATGTATTGTCTATATGTGGA 60.240 42.308 0.00 0.00 32.22 4.02
2350 8346 5.939883 CCACCCATGTATTGTCTATATGTGG 59.060 44.000 0.00 0.00 0.00 4.17
2353 8349 6.126863 ACCCACCCATGTATTGTCTATATG 57.873 41.667 0.00 0.00 0.00 1.78
2354 8350 6.214819 GGTACCCACCCATGTATTGTCTATAT 59.785 42.308 0.00 0.00 39.11 0.86
2355 8351 5.544948 GGTACCCACCCATGTATTGTCTATA 59.455 44.000 0.00 0.00 39.11 1.31
2356 8352 4.349930 GGTACCCACCCATGTATTGTCTAT 59.650 45.833 0.00 0.00 39.11 1.98
2358 8354 2.508300 GGTACCCACCCATGTATTGTCT 59.492 50.000 0.00 0.00 39.11 3.41
2359 8355 2.240160 TGGTACCCACCCATGTATTGTC 59.760 50.000 10.07 0.00 45.11 3.18
2360 8356 2.280103 TGGTACCCACCCATGTATTGT 58.720 47.619 10.07 0.00 45.11 2.71
2361 8357 3.287222 CTTGGTACCCACCCATGTATTG 58.713 50.000 10.07 0.00 45.11 1.90
2362 8358 2.357777 GCTTGGTACCCACCCATGTATT 60.358 50.000 10.07 0.00 45.11 1.89
2363 8359 1.214424 GCTTGGTACCCACCCATGTAT 59.786 52.381 10.07 0.00 45.11 2.29
2364 8360 0.621609 GCTTGGTACCCACCCATGTA 59.378 55.000 10.07 0.00 45.11 2.29
2365 8361 1.382629 GCTTGGTACCCACCCATGT 59.617 57.895 10.07 0.00 45.11 3.21
2366 8362 0.251564 TTGCTTGGTACCCACCCATG 60.252 55.000 10.07 0.00 45.11 3.66
2367 8363 0.709992 ATTGCTTGGTACCCACCCAT 59.290 50.000 10.07 0.00 45.11 4.00
2368 8364 1.373536 TATTGCTTGGTACCCACCCA 58.626 50.000 10.07 0.00 45.11 4.51
2369 8365 2.517998 TTATTGCTTGGTACCCACCC 57.482 50.000 10.07 0.00 45.11 4.61
2370 8366 6.300703 TGTATATTATTGCTTGGTACCCACC 58.699 40.000 10.07 0.00 46.00 4.61
2371 8367 7.996098 ATGTATATTATTGCTTGGTACCCAC 57.004 36.000 10.07 0.00 30.78 4.61
2372 8368 9.733556 CTTATGTATATTATTGCTTGGTACCCA 57.266 33.333 10.07 0.00 0.00 4.51
2373 8369 9.953565 TCTTATGTATATTATTGCTTGGTACCC 57.046 33.333 10.07 0.00 0.00 3.69
2385 8381 9.629878 CGGAGGGAGTACTCTTATGTATATTAT 57.370 37.037 21.88 0.00 37.63 1.28
2386 8382 8.609483 ACGGAGGGAGTACTCTTATGTATATTA 58.391 37.037 21.88 0.00 37.63 0.98
2387 8383 7.468496 ACGGAGGGAGTACTCTTATGTATATT 58.532 38.462 21.88 0.00 37.63 1.28
2388 8384 7.030234 ACGGAGGGAGTACTCTTATGTATAT 57.970 40.000 21.88 0.00 37.63 0.86
2389 8385 6.445451 ACGGAGGGAGTACTCTTATGTATA 57.555 41.667 21.88 0.00 37.63 1.47
2390 8386 5.321934 ACGGAGGGAGTACTCTTATGTAT 57.678 43.478 21.88 1.04 37.63 2.29
2391 8387 4.785346 ACGGAGGGAGTACTCTTATGTA 57.215 45.455 21.88 0.00 37.63 2.29
2392 8388 3.666345 ACGGAGGGAGTACTCTTATGT 57.334 47.619 21.88 11.61 37.63 2.29
2393 8389 5.826737 TCTTTACGGAGGGAGTACTCTTATG 59.173 44.000 21.88 11.03 37.63 1.90
2394 8390 6.011122 TCTTTACGGAGGGAGTACTCTTAT 57.989 41.667 21.88 8.59 37.63 1.73
2395 8391 5.441718 TCTTTACGGAGGGAGTACTCTTA 57.558 43.478 21.88 2.57 37.63 2.10
2396 8392 4.313020 TCTTTACGGAGGGAGTACTCTT 57.687 45.455 21.88 11.06 37.63 2.85
2397 8393 4.313020 TTCTTTACGGAGGGAGTACTCT 57.687 45.455 21.88 3.41 37.63 3.24
2398 8394 5.595257 ATTTCTTTACGGAGGGAGTACTC 57.405 43.478 14.87 14.87 36.76 2.59
2399 8395 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
2400 8396 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
2401 8397 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
2402 8398 7.471679 GCTCTTATATTTCTTTACGGAGGGAGT 60.472 40.741 0.00 0.00 0.00 3.85
2403 8399 6.869388 GCTCTTATATTTCTTTACGGAGGGAG 59.131 42.308 0.00 0.00 0.00 4.30
2404 8400 6.516194 CGCTCTTATATTTCTTTACGGAGGGA 60.516 42.308 0.00 0.00 34.63 4.20
2405 8401 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
2452 8448 8.579850 TTTGGTGATCTAAATGCTTTAGTGAT 57.420 30.769 12.43 5.46 42.49 3.06
2453 8449 7.994425 TTTGGTGATCTAAATGCTTTAGTGA 57.006 32.000 12.43 1.78 42.49 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.