Multiple sequence alignment - TraesCS5B01G087200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G087200 chr5B 100.000 3900 0 0 1 3900 111684348 111680449 0.000000e+00 7203.0
1 TraesCS5B01G087200 chr5B 100.000 186 0 0 1659 1844 554512766 554512581 1.040000e-90 344.0
2 TraesCS5B01G087200 chr5B 94.017 117 6 1 2190 2306 111682038 111681923 4.000000e-40 176.0
3 TraesCS5B01G087200 chr5B 94.017 117 6 1 2311 2426 111682159 111682043 4.000000e-40 176.0
4 TraesCS5B01G087200 chr5A 92.681 1626 76 23 2306 3892 97564511 97562890 0.000000e+00 2303.0
5 TraesCS5B01G087200 chr5A 89.776 802 57 16 878 1658 97565654 97564857 0.000000e+00 1003.0
6 TraesCS5B01G087200 chr5A 88.889 477 35 10 1845 2306 97564864 97564391 4.370000e-159 571.0
7 TraesCS5B01G087200 chr5A 91.071 392 33 2 1 390 668191241 668191632 2.670000e-146 529.0
8 TraesCS5B01G087200 chr5A 88.834 403 31 4 431 831 668191633 668192023 2.110000e-132 483.0
9 TraesCS5B01G087200 chr5D 91.033 1171 58 23 2311 3468 102277322 102276186 0.000000e+00 1537.0
10 TraesCS5B01G087200 chr5D 90.488 799 57 12 878 1658 102278454 102277657 0.000000e+00 1037.0
11 TraesCS5B01G087200 chr5D 92.584 418 14 11 3492 3900 102276107 102275698 5.620000e-163 584.0
12 TraesCS5B01G087200 chr5D 87.696 447 47 8 1845 2288 102277664 102277223 7.470000e-142 514.0
13 TraesCS5B01G087200 chr5D 88.000 75 8 1 769 842 28645428 28645354 1.930000e-13 87.9
14 TraesCS5B01G087200 chr4A 96.916 843 24 2 1 842 695995621 695994780 0.000000e+00 1411.0
15 TraesCS5B01G087200 chr4A 97.884 189 4 0 1656 1844 59383677 59383865 1.040000e-85 327.0
16 TraesCS5B01G087200 chr6B 79.853 819 132 13 6 805 41605337 41604533 5.660000e-158 568.0
17 TraesCS5B01G087200 chr6B 93.651 189 12 0 1 189 80049565 80049753 2.290000e-72 283.0
18 TraesCS5B01G087200 chr6B 98.039 153 3 0 429 581 80049754 80049906 2.310000e-67 267.0
19 TraesCS5B01G087200 chr6B 96.970 99 3 0 615 713 80049905 80050003 2.410000e-37 167.0
20 TraesCS5B01G087200 chr2D 91.206 398 27 4 2813 3203 610857979 610858375 5.740000e-148 534.0
21 TraesCS5B01G087200 chr2D 72.675 699 148 25 162 833 60010752 60011434 3.980000e-45 193.0
22 TraesCS5B01G087200 chr2D 92.982 57 4 0 369 425 642490063 642490119 2.500000e-12 84.2
23 TraesCS5B01G087200 chr4B 100.000 187 0 0 1659 1845 256336687 256336501 2.880000e-91 346.0
24 TraesCS5B01G087200 chr4B 94.712 208 10 1 1640 1846 291852196 291852403 4.860000e-84 322.0
25 TraesCS5B01G087200 chr2A 100.000 187 0 0 1659 1845 711883680 711883866 2.880000e-91 346.0
26 TraesCS5B01G087200 chr1A 99.465 187 1 0 1659 1845 234211559 234211373 1.340000e-89 340.0
27 TraesCS5B01G087200 chr3B 99.462 186 1 0 1659 1844 257519470 257519655 4.830000e-89 339.0
28 TraesCS5B01G087200 chr7B 97.475 198 3 2 1655 1851 400932352 400932156 1.740000e-88 337.0
29 TraesCS5B01G087200 chr1B 95.960 198 6 2 1648 1845 388768916 388769111 1.750000e-83 320.0
30 TraesCS5B01G087200 chr1D 86.905 84 10 1 748 830 234745362 234745445 4.150000e-15 93.5
31 TraesCS5B01G087200 chrUn 93.617 47 3 0 795 841 271453495 271453449 1.940000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G087200 chr5B 111680449 111684348 3899 True 2518.333333 7203 96.011333 1 3900 3 chr5B.!!$R2 3899
1 TraesCS5B01G087200 chr5A 97562890 97565654 2764 True 1292.333333 2303 90.448667 878 3892 3 chr5A.!!$R1 3014
2 TraesCS5B01G087200 chr5A 668191241 668192023 782 False 506.000000 529 89.952500 1 831 2 chr5A.!!$F1 830
3 TraesCS5B01G087200 chr5D 102275698 102278454 2756 True 918.000000 1537 90.450250 878 3900 4 chr5D.!!$R2 3022
4 TraesCS5B01G087200 chr4A 695994780 695995621 841 True 1411.000000 1411 96.916000 1 842 1 chr4A.!!$R1 841
5 TraesCS5B01G087200 chr6B 41604533 41605337 804 True 568.000000 568 79.853000 6 805 1 chr6B.!!$R1 799

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 873 0.388649 CGCCTAGCAACGGCCTATAG 60.389 60.0 0.00 0.0 44.73 1.31 F
1004 1035 0.108585 CCCAGCATAACGCCTGGTAT 59.891 55.0 6.00 0.0 44.04 2.73 F
1675 1726 0.108186 TGCATGGATTTCGAGTCGCT 60.108 50.0 7.92 0.0 0.00 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1707 0.108186 AGCGACTCGAAATCCATGCA 60.108 50.000 1.63 0.0 0.0 3.96 R
2775 2841 0.113190 AGAAACTTGAAGGGGCAGGG 59.887 55.000 0.00 0.0 0.0 4.45 R
3152 3226 1.535028 TGTTCATGTGCATCGTCCAAC 59.465 47.619 0.00 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
163 165 2.402305 GAGCTTCATCCAGCGACATAG 58.598 52.381 0.00 0.00 45.24 2.23
291 295 3.395639 TCAAATCGCTACAACCGTCTTT 58.604 40.909 0.00 0.00 0.00 2.52
537 563 1.229975 TGCTGCATCGGACACAACAG 61.230 55.000 0.00 0.00 0.00 3.16
644 670 0.878416 GCTGGTTATCGGCAAACACA 59.122 50.000 0.00 0.00 46.73 3.72
761 791 4.202315 TGAGGAAACAGAGGAAATCAACGA 60.202 41.667 0.00 0.00 0.00 3.85
842 872 1.663739 CGCCTAGCAACGGCCTATA 59.336 57.895 0.00 0.00 44.73 1.31
843 873 0.388649 CGCCTAGCAACGGCCTATAG 60.389 60.000 0.00 0.00 44.73 1.31
844 874 0.966920 GCCTAGCAACGGCCTATAGA 59.033 55.000 0.00 0.00 41.73 1.98
845 875 1.550976 GCCTAGCAACGGCCTATAGAT 59.449 52.381 0.00 0.00 41.73 1.98
846 876 2.028020 GCCTAGCAACGGCCTATAGATT 60.028 50.000 0.00 0.00 41.73 2.40
847 877 3.194968 GCCTAGCAACGGCCTATAGATTA 59.805 47.826 0.00 0.00 41.73 1.75
848 878 4.141914 GCCTAGCAACGGCCTATAGATTAT 60.142 45.833 0.00 0.00 41.73 1.28
849 879 5.068723 GCCTAGCAACGGCCTATAGATTATA 59.931 44.000 0.00 0.00 41.73 0.98
850 880 6.736243 GCCTAGCAACGGCCTATAGATTATAG 60.736 46.154 0.00 0.00 41.73 1.31
851 881 6.546403 CCTAGCAACGGCCTATAGATTATAGA 59.454 42.308 0.00 0.00 42.56 1.98
852 882 7.231722 CCTAGCAACGGCCTATAGATTATAGAT 59.768 40.741 0.00 0.00 42.56 1.98
853 883 6.810911 AGCAACGGCCTATAGATTATAGATG 58.189 40.000 0.00 0.00 42.56 2.90
854 884 6.381420 AGCAACGGCCTATAGATTATAGATGT 59.619 38.462 0.00 0.00 42.56 3.06
855 885 6.477033 GCAACGGCCTATAGATTATAGATGTG 59.523 42.308 0.00 0.00 40.43 3.21
856 886 7.548097 CAACGGCCTATAGATTATAGATGTGT 58.452 38.462 0.00 0.00 40.43 3.72
857 887 8.683615 CAACGGCCTATAGATTATAGATGTGTA 58.316 37.037 0.00 0.00 40.43 2.90
858 888 8.998277 ACGGCCTATAGATTATAGATGTGTAT 57.002 34.615 0.00 0.00 40.43 2.29
859 889 9.422681 ACGGCCTATAGATTATAGATGTGTATT 57.577 33.333 0.00 0.00 40.43 1.89
860 890 9.900710 CGGCCTATAGATTATAGATGTGTATTC 57.099 37.037 0.00 0.00 40.43 1.75
896 926 6.738832 AGAAAAGATAGCCGGACTAAAAAC 57.261 37.500 5.05 0.90 33.57 2.43
947 978 5.694995 TCTGAAAAAGGGAATTGTCACTCT 58.305 37.500 0.00 0.00 36.05 3.24
952 983 6.396829 AAAAGGGAATTGTCACTCTTGAAG 57.603 37.500 0.00 0.00 36.05 3.02
961 992 1.494721 TCACTCTTGAAGCCCAAAGGT 59.505 47.619 0.00 0.00 33.76 3.50
992 1023 4.148825 GGACGACGAGCCCAGCAT 62.149 66.667 0.00 0.00 0.00 3.79
1002 1033 2.272146 CCCAGCATAACGCCTGGT 59.728 61.111 6.00 0.00 44.04 4.00
1003 1034 1.524961 CCCAGCATAACGCCTGGTA 59.475 57.895 6.00 0.00 44.04 3.25
1004 1035 0.108585 CCCAGCATAACGCCTGGTAT 59.891 55.000 6.00 0.00 44.04 2.73
1005 1036 1.346395 CCCAGCATAACGCCTGGTATA 59.654 52.381 6.00 0.00 44.04 1.47
1006 1037 2.027192 CCCAGCATAACGCCTGGTATAT 60.027 50.000 6.00 0.00 44.04 0.86
1007 1038 3.262420 CCAGCATAACGCCTGGTATATC 58.738 50.000 0.00 0.00 44.04 1.63
1009 1040 3.928992 CAGCATAACGCCTGGTATATCTG 59.071 47.826 0.00 0.00 44.04 2.90
1011 1042 3.927142 GCATAACGCCTGGTATATCTGTC 59.073 47.826 0.00 0.00 32.94 3.51
1100 1143 1.569653 ACCCTAGTTTCCCTCTTCGG 58.430 55.000 0.00 0.00 0.00 4.30
1245 1288 1.295423 CCCCCTGATAATACGGCCG 59.705 63.158 26.86 26.86 0.00 6.13
1267 1310 1.433879 GATCCCTGTCTCGTCCGTG 59.566 63.158 0.00 0.00 0.00 4.94
1274 1317 1.468914 CTGTCTCGTCCGTGATCTGAA 59.531 52.381 0.00 0.00 0.00 3.02
1278 1321 3.017442 TCTCGTCCGTGATCTGAATTCT 58.983 45.455 7.05 0.00 0.00 2.40
1281 1324 4.860072 TCGTCCGTGATCTGAATTCTATG 58.140 43.478 7.05 0.00 0.00 2.23
1283 1326 4.499865 CGTCCGTGATCTGAATTCTATGGT 60.500 45.833 7.05 0.00 0.00 3.55
1286 1329 5.010112 TCCGTGATCTGAATTCTATGGTCTC 59.990 44.000 7.05 3.64 0.00 3.36
1294 1337 1.776662 TTCTATGGTCTCAGGTCGGG 58.223 55.000 0.00 0.00 0.00 5.14
1314 1357 1.651987 GCTTGTATCTTGCGCTACCA 58.348 50.000 9.73 0.00 0.00 3.25
1335 1379 4.315803 CAGAAAACAGTGATTAGGTCGGT 58.684 43.478 0.00 0.00 0.00 4.69
1347 1391 0.246635 AGGTCGGTACTCATGTGTGC 59.753 55.000 10.62 8.95 0.00 4.57
1374 1418 5.408356 TCTGACTATCTAGGCGTTTTTCAC 58.592 41.667 0.00 0.00 32.65 3.18
1385 1429 0.664224 GTTTTTCACGGCGGAGGAAA 59.336 50.000 13.24 15.02 0.00 3.13
1394 1438 2.148768 CGGCGGAGGAAAAAGTTACTT 58.851 47.619 0.00 0.00 0.00 2.24
1395 1439 2.159037 CGGCGGAGGAAAAAGTTACTTC 59.841 50.000 0.00 0.00 0.00 3.01
1404 1448 7.308049 GGAGGAAAAAGTTACTTCAGATGTGTC 60.308 40.741 0.00 0.00 0.00 3.67
1493 1543 2.235155 TGCGCTTAGTTTCCAGGTATCA 59.765 45.455 9.73 0.00 0.00 2.15
1523 1573 1.108727 TGTGAGTTTGCAGCCCCTTG 61.109 55.000 0.00 0.00 0.00 3.61
1566 1616 6.665248 AGATAGGTTTAAATTTGAGCTGCCTT 59.335 34.615 14.59 2.34 0.00 4.35
1568 1618 5.541845 AGGTTTAAATTTGAGCTGCCTTTC 58.458 37.500 0.00 0.00 0.00 2.62
1591 1642 8.458573 TTCTTTTGCTTAGATAGTTGAAACCA 57.541 30.769 0.00 0.00 0.00 3.67
1650 1701 5.334879 GCTATGTTGTACTTGGGTTTGAGTG 60.335 44.000 0.00 0.00 0.00 3.51
1651 1702 3.283751 TGTTGTACTTGGGTTTGAGTGG 58.716 45.455 0.00 0.00 0.00 4.00
1652 1703 1.975660 TGTACTTGGGTTTGAGTGGC 58.024 50.000 0.00 0.00 0.00 5.01
1653 1704 1.493022 TGTACTTGGGTTTGAGTGGCT 59.507 47.619 0.00 0.00 0.00 4.75
1654 1705 2.706723 TGTACTTGGGTTTGAGTGGCTA 59.293 45.455 0.00 0.00 0.00 3.93
1655 1706 3.329520 TGTACTTGGGTTTGAGTGGCTAT 59.670 43.478 0.00 0.00 0.00 2.97
1656 1707 3.525800 ACTTGGGTTTGAGTGGCTATT 57.474 42.857 0.00 0.00 0.00 1.73
1657 1708 3.157087 ACTTGGGTTTGAGTGGCTATTG 58.843 45.455 0.00 0.00 0.00 1.90
1658 1709 1.544724 TGGGTTTGAGTGGCTATTGC 58.455 50.000 0.00 0.00 38.76 3.56
1659 1710 1.202989 TGGGTTTGAGTGGCTATTGCA 60.203 47.619 0.66 0.00 41.91 4.08
1660 1711 2.102578 GGGTTTGAGTGGCTATTGCAT 58.897 47.619 0.66 0.00 41.91 3.96
1661 1712 2.159198 GGGTTTGAGTGGCTATTGCATG 60.159 50.000 0.66 0.00 41.91 4.06
1662 1713 2.159198 GGTTTGAGTGGCTATTGCATGG 60.159 50.000 0.66 0.00 41.91 3.66
1663 1714 2.754552 GTTTGAGTGGCTATTGCATGGA 59.245 45.455 0.66 0.00 41.91 3.41
1664 1715 3.301794 TTGAGTGGCTATTGCATGGAT 57.698 42.857 0.66 0.00 41.91 3.41
1665 1716 3.301794 TGAGTGGCTATTGCATGGATT 57.698 42.857 0.66 0.00 41.91 3.01
1666 1717 3.634504 TGAGTGGCTATTGCATGGATTT 58.365 40.909 0.66 0.00 41.91 2.17
1667 1718 3.633525 TGAGTGGCTATTGCATGGATTTC 59.366 43.478 0.66 0.00 41.91 2.17
1668 1719 2.620115 AGTGGCTATTGCATGGATTTCG 59.380 45.455 0.66 0.00 41.91 3.46
1669 1720 2.618241 GTGGCTATTGCATGGATTTCGA 59.382 45.455 0.66 0.00 41.91 3.71
1670 1721 2.880268 TGGCTATTGCATGGATTTCGAG 59.120 45.455 0.66 0.00 41.91 4.04
1671 1722 2.880890 GGCTATTGCATGGATTTCGAGT 59.119 45.455 0.66 0.00 41.91 4.18
1672 1723 3.058639 GGCTATTGCATGGATTTCGAGTC 60.059 47.826 0.66 0.00 41.91 3.36
1673 1724 3.363378 GCTATTGCATGGATTTCGAGTCG 60.363 47.826 6.09 6.09 39.41 4.18
1674 1725 0.726827 TTGCATGGATTTCGAGTCGC 59.273 50.000 7.92 0.00 0.00 5.19
1675 1726 0.108186 TGCATGGATTTCGAGTCGCT 60.108 50.000 7.92 0.00 0.00 4.93
1676 1727 0.579156 GCATGGATTTCGAGTCGCTC 59.421 55.000 7.92 4.43 0.00 5.03
1723 1774 8.804688 GACTAGTCTATGAGTCGCAAAAATAT 57.195 34.615 15.91 0.00 33.27 1.28
1724 1775 8.581057 ACTAGTCTATGAGTCGCAAAAATATG 57.419 34.615 0.00 0.00 0.00 1.78
1725 1776 6.851222 AGTCTATGAGTCGCAAAAATATGG 57.149 37.500 0.00 0.00 0.00 2.74
1726 1777 6.349300 AGTCTATGAGTCGCAAAAATATGGT 58.651 36.000 0.00 0.00 0.00 3.55
1727 1778 6.480320 AGTCTATGAGTCGCAAAAATATGGTC 59.520 38.462 0.00 0.00 0.00 4.02
1728 1779 4.536364 ATGAGTCGCAAAAATATGGTCG 57.464 40.909 0.00 0.00 0.00 4.79
1729 1780 3.591023 TGAGTCGCAAAAATATGGTCGA 58.409 40.909 0.00 0.00 0.00 4.20
1730 1781 3.369756 TGAGTCGCAAAAATATGGTCGAC 59.630 43.478 7.13 7.13 44.36 4.20
1732 1783 3.924610 GTCGCAAAAATATGGTCGACTC 58.075 45.455 16.46 6.30 41.84 3.36
1733 1784 3.369756 GTCGCAAAAATATGGTCGACTCA 59.630 43.478 16.46 12.14 41.84 3.41
1734 1785 3.616821 TCGCAAAAATATGGTCGACTCAG 59.383 43.478 16.46 0.00 0.00 3.35
1735 1786 3.685058 GCAAAAATATGGTCGACTCAGC 58.315 45.455 16.46 6.06 0.00 4.26
1736 1787 3.375299 GCAAAAATATGGTCGACTCAGCT 59.625 43.478 16.46 0.87 0.00 4.24
1737 1788 4.142600 GCAAAAATATGGTCGACTCAGCTT 60.143 41.667 16.46 6.75 0.00 3.74
1738 1789 5.064707 GCAAAAATATGGTCGACTCAGCTTA 59.935 40.000 16.46 1.81 0.00 3.09
1739 1790 6.709643 CAAAAATATGGTCGACTCAGCTTAG 58.290 40.000 16.46 0.00 0.00 2.18
1740 1791 5.599999 AAATATGGTCGACTCAGCTTAGT 57.400 39.130 16.46 0.00 0.00 2.24
1741 1792 2.949451 ATGGTCGACTCAGCTTAGTG 57.051 50.000 16.46 0.00 0.00 2.74
1742 1793 1.617322 TGGTCGACTCAGCTTAGTGT 58.383 50.000 16.46 0.00 0.00 3.55
1743 1794 1.540267 TGGTCGACTCAGCTTAGTGTC 59.460 52.381 16.46 0.80 0.00 3.67
1748 1799 3.125698 GACTCAGCTTAGTGTCGACTC 57.874 52.381 17.92 13.63 33.21 3.36
1749 1800 1.465387 ACTCAGCTTAGTGTCGACTCG 59.535 52.381 17.92 1.95 33.21 4.18
1750 1801 0.168348 TCAGCTTAGTGTCGACTCGC 59.832 55.000 17.92 11.93 33.21 5.03
1751 1802 1.128724 CAGCTTAGTGTCGACTCGCG 61.129 60.000 17.92 0.00 42.69 5.87
1769 1820 2.011932 CGAATCTGAGTCGCGACTAG 57.988 55.000 39.33 31.42 42.66 2.57
1770 1821 1.328069 CGAATCTGAGTCGCGACTAGT 59.672 52.381 39.33 24.70 42.66 2.57
1771 1822 2.597971 CGAATCTGAGTCGCGACTAGTC 60.598 54.545 39.33 29.37 42.66 2.59
1772 1823 2.025589 ATCTGAGTCGCGACTAGTCA 57.974 50.000 39.33 30.22 42.66 3.41
1773 1824 1.077123 TCTGAGTCGCGACTAGTCAC 58.923 55.000 39.33 26.64 42.66 3.67
1774 1825 0.796927 CTGAGTCGCGACTAGTCACA 59.203 55.000 39.33 29.42 42.66 3.58
1775 1826 1.197036 CTGAGTCGCGACTAGTCACAA 59.803 52.381 39.33 18.16 42.66 3.33
1776 1827 1.069432 TGAGTCGCGACTAGTCACAAC 60.069 52.381 39.33 24.54 42.66 3.32
1777 1828 0.949397 AGTCGCGACTAGTCACAACA 59.051 50.000 38.67 0.00 40.43 3.33
1778 1829 1.050767 GTCGCGACTAGTCACAACAC 58.949 55.000 31.12 7.53 0.00 3.32
1779 1830 0.664224 TCGCGACTAGTCACAACACA 59.336 50.000 22.37 0.00 0.00 3.72
1780 1831 1.053048 CGCGACTAGTCACAACACAG 58.947 55.000 22.37 4.87 0.00 3.66
1781 1832 1.419374 GCGACTAGTCACAACACAGG 58.581 55.000 22.37 4.17 0.00 4.00
1782 1833 1.419374 CGACTAGTCACAACACAGGC 58.581 55.000 22.37 0.00 0.00 4.85
1783 1834 1.000163 CGACTAGTCACAACACAGGCT 60.000 52.381 22.37 0.00 0.00 4.58
1784 1835 2.678324 GACTAGTCACAACACAGGCTC 58.322 52.381 18.20 0.00 0.00 4.70
1785 1836 1.000163 ACTAGTCACAACACAGGCTCG 60.000 52.381 0.00 0.00 0.00 5.03
1786 1837 1.269723 CTAGTCACAACACAGGCTCGA 59.730 52.381 0.00 0.00 0.00 4.04
1787 1838 0.249489 AGTCACAACACAGGCTCGAC 60.249 55.000 0.00 0.00 0.00 4.20
1788 1839 0.249489 GTCACAACACAGGCTCGACT 60.249 55.000 0.00 0.00 0.00 4.18
1789 1840 0.464036 TCACAACACAGGCTCGACTT 59.536 50.000 0.00 0.00 0.00 3.01
1790 1841 0.861837 CACAACACAGGCTCGACTTC 59.138 55.000 0.00 0.00 0.00 3.01
1791 1842 0.753262 ACAACACAGGCTCGACTTCT 59.247 50.000 0.00 0.00 0.00 2.85
1792 1843 1.139058 ACAACACAGGCTCGACTTCTT 59.861 47.619 0.00 0.00 0.00 2.52
1793 1844 1.795286 CAACACAGGCTCGACTTCTTC 59.205 52.381 0.00 0.00 0.00 2.87
1794 1845 0.318762 ACACAGGCTCGACTTCTTCC 59.681 55.000 0.00 0.00 0.00 3.46
1795 1846 0.734253 CACAGGCTCGACTTCTTCCG 60.734 60.000 0.00 0.00 0.00 4.30
1796 1847 0.894184 ACAGGCTCGACTTCTTCCGA 60.894 55.000 0.00 0.00 0.00 4.55
1803 1854 3.022981 GACTTCTTCCGAGTCGCTG 57.977 57.895 7.12 0.00 34.76 5.18
1804 1855 1.073768 GACTTCTTCCGAGTCGCTGC 61.074 60.000 7.12 0.00 34.76 5.25
1805 1856 1.214062 CTTCTTCCGAGTCGCTGCT 59.786 57.895 7.12 0.00 0.00 4.24
1806 1857 0.800300 CTTCTTCCGAGTCGCTGCTC 60.800 60.000 7.12 0.00 0.00 4.26
1807 1858 2.202676 CTTCCGAGTCGCTGCTCC 60.203 66.667 7.12 0.00 32.11 4.70
1808 1859 2.989253 TTCCGAGTCGCTGCTCCA 60.989 61.111 7.12 0.00 32.11 3.86
1809 1860 2.880719 CTTCCGAGTCGCTGCTCCAG 62.881 65.000 7.12 0.00 32.11 3.86
1810 1861 3.443925 CCGAGTCGCTGCTCCAGA 61.444 66.667 7.12 0.00 32.44 3.86
1811 1862 2.101965 CGAGTCGCTGCTCCAGAG 59.898 66.667 0.00 0.00 32.44 3.35
1842 1893 4.979204 TCGCGACTCGAAAACCAT 57.021 50.000 3.71 0.00 45.36 3.55
1843 1894 2.441023 TCGCGACTCGAAAACCATG 58.559 52.632 3.71 0.00 45.36 3.66
1864 1915 3.904965 TGGGCTATTGTGGTCGGATTATA 59.095 43.478 0.00 0.00 0.00 0.98
1897 1948 4.113354 GAGTTAGGTTCGTGCCTATTCTG 58.887 47.826 8.18 0.00 40.47 3.02
1976 2028 1.899142 AGCTTGTTGGTTGTGTGGTTT 59.101 42.857 0.00 0.00 0.00 3.27
1977 2029 3.093057 AGCTTGTTGGTTGTGTGGTTTA 58.907 40.909 0.00 0.00 0.00 2.01
1978 2030 3.130340 AGCTTGTTGGTTGTGTGGTTTAG 59.870 43.478 0.00 0.00 0.00 1.85
1980 2032 4.668289 CTTGTTGGTTGTGTGGTTTAGTC 58.332 43.478 0.00 0.00 0.00 2.59
2012 2064 7.336176 GCTATTCAGATGGATATTCAGATGCAA 59.664 37.037 0.00 0.00 30.33 4.08
2014 2066 7.448748 TTCAGATGGATATTCAGATGCAATG 57.551 36.000 0.00 0.00 30.33 2.82
2021 2073 6.608405 TGGATATTCAGATGCAATGGTCTTTT 59.392 34.615 0.00 0.00 0.00 2.27
2024 2076 9.837525 GATATTCAGATGCAATGGTCTTTTATC 57.162 33.333 0.00 0.00 0.00 1.75
2025 2077 7.649533 ATTCAGATGCAATGGTCTTTTATCA 57.350 32.000 0.00 0.00 0.00 2.15
2031 2096 6.117911 TGCAATGGTCTTTTATCATGTACG 57.882 37.500 0.00 0.00 0.00 3.67
2063 2128 9.625747 TGCAAGAACATATGTTATCTGGATTAA 57.374 29.630 20.83 0.00 38.56 1.40
2103 2168 6.074676 GCAGAACTTCACTAAATTGCTGTTTG 60.075 38.462 0.00 0.00 0.00 2.93
2155 2220 7.719633 GGTTTATGCTGGAGTTGATAAAGGATA 59.280 37.037 0.00 0.00 0.00 2.59
2279 2344 4.975794 AGTATTGCCCACTAGAATAACCCT 59.024 41.667 0.00 0.00 0.00 4.34
2281 2346 3.926058 TGCCCACTAGAATAACCCTTC 57.074 47.619 0.00 0.00 0.00 3.46
2282 2347 3.186283 TGCCCACTAGAATAACCCTTCA 58.814 45.455 0.00 0.00 0.00 3.02
2283 2348 3.785887 TGCCCACTAGAATAACCCTTCAT 59.214 43.478 0.00 0.00 0.00 2.57
2284 2349 4.141482 TGCCCACTAGAATAACCCTTCATC 60.141 45.833 0.00 0.00 0.00 2.92
2286 2351 4.660771 CCCACTAGAATAACCCTTCATCCT 59.339 45.833 0.00 0.00 0.00 3.24
2288 2353 6.058183 CCACTAGAATAACCCTTCATCCTTG 58.942 44.000 0.00 0.00 0.00 3.61
2289 2354 6.353082 CCACTAGAATAACCCTTCATCCTTGT 60.353 42.308 0.00 0.00 0.00 3.16
2290 2355 6.540189 CACTAGAATAACCCTTCATCCTTGTG 59.460 42.308 0.00 0.00 0.00 3.33
2291 2356 5.520748 AGAATAACCCTTCATCCTTGTGT 57.479 39.130 0.00 0.00 0.00 3.72
2292 2357 6.636454 AGAATAACCCTTCATCCTTGTGTA 57.364 37.500 0.00 0.00 0.00 2.90
2293 2358 7.213178 AGAATAACCCTTCATCCTTGTGTAT 57.787 36.000 0.00 0.00 0.00 2.29
2294 2359 8.331931 AGAATAACCCTTCATCCTTGTGTATA 57.668 34.615 0.00 0.00 0.00 1.47
2295 2360 8.949421 AGAATAACCCTTCATCCTTGTGTATAT 58.051 33.333 0.00 0.00 0.00 0.86
2298 2363 7.691993 AACCCTTCATCCTTGTGTATATAGT 57.308 36.000 0.00 0.00 0.00 2.12
2299 2364 7.304497 ACCCTTCATCCTTGTGTATATAGTC 57.696 40.000 0.00 0.00 0.00 2.59
2300 2365 6.015350 ACCCTTCATCCTTGTGTATATAGTCG 60.015 42.308 0.00 0.00 0.00 4.18
2301 2366 6.390721 CCTTCATCCTTGTGTATATAGTCGG 58.609 44.000 0.00 0.00 0.00 4.79
2302 2367 5.977489 TCATCCTTGTGTATATAGTCGGG 57.023 43.478 0.00 0.00 0.00 5.14
2303 2368 5.637127 TCATCCTTGTGTATATAGTCGGGA 58.363 41.667 0.00 0.00 0.00 5.14
2304 2369 5.710567 TCATCCTTGTGTATATAGTCGGGAG 59.289 44.000 0.00 0.00 0.00 4.30
2305 2370 5.057843 TCCTTGTGTATATAGTCGGGAGT 57.942 43.478 0.00 0.00 0.00 3.85
2306 2371 5.452255 TCCTTGTGTATATAGTCGGGAGTT 58.548 41.667 0.00 0.00 0.00 3.01
2307 2372 5.533903 TCCTTGTGTATATAGTCGGGAGTTC 59.466 44.000 0.00 0.00 0.00 3.01
2308 2373 5.535406 CCTTGTGTATATAGTCGGGAGTTCT 59.465 44.000 0.00 0.00 0.00 3.01
2309 2374 6.713903 CCTTGTGTATATAGTCGGGAGTTCTA 59.286 42.308 0.00 0.00 0.00 2.10
2310 2375 7.393796 CCTTGTGTATATAGTCGGGAGTTCTAT 59.606 40.741 0.00 0.00 34.58 1.98
2311 2376 7.918536 TGTGTATATAGTCGGGAGTTCTATC 57.081 40.000 0.00 0.00 33.29 2.08
2312 2377 7.687388 TGTGTATATAGTCGGGAGTTCTATCT 58.313 38.462 0.00 0.00 33.29 1.98
2313 2378 8.819845 TGTGTATATAGTCGGGAGTTCTATCTA 58.180 37.037 0.00 0.00 33.29 1.98
2314 2379 9.835389 GTGTATATAGTCGGGAGTTCTATCTAT 57.165 37.037 0.00 0.00 33.29 1.98
2315 2380 9.833917 TGTATATAGTCGGGAGTTCTATCTATG 57.166 37.037 0.00 0.00 33.29 2.23
2316 2381 9.835389 GTATATAGTCGGGAGTTCTATCTATGT 57.165 37.037 0.00 0.00 33.29 2.29
2318 2383 5.776173 AGTCGGGAGTTCTATCTATGTTG 57.224 43.478 0.00 0.00 0.00 3.33
2319 2384 4.038162 AGTCGGGAGTTCTATCTATGTTGC 59.962 45.833 0.00 0.00 0.00 4.17
2320 2385 3.321111 TCGGGAGTTCTATCTATGTTGCC 59.679 47.826 0.00 0.00 0.00 4.52
2321 2386 3.069586 CGGGAGTTCTATCTATGTTGCCA 59.930 47.826 0.00 0.00 0.00 4.92
2322 2387 4.381411 GGGAGTTCTATCTATGTTGCCAC 58.619 47.826 0.00 0.00 0.00 5.01
2323 2388 4.141711 GGGAGTTCTATCTATGTTGCCACA 60.142 45.833 0.00 0.00 37.31 4.17
2324 2389 5.053145 GGAGTTCTATCTATGTTGCCACAG 58.947 45.833 0.00 0.00 35.94 3.66
2325 2390 5.028549 AGTTCTATCTATGTTGCCACAGG 57.971 43.478 0.00 0.00 35.94 4.00
2326 2391 4.471386 AGTTCTATCTATGTTGCCACAGGT 59.529 41.667 0.00 0.00 35.94 4.00
2327 2392 5.045578 AGTTCTATCTATGTTGCCACAGGTT 60.046 40.000 0.00 0.00 35.94 3.50
2328 2393 6.156256 AGTTCTATCTATGTTGCCACAGGTTA 59.844 38.462 0.00 0.00 35.94 2.85
2329 2394 6.747414 TCTATCTATGTTGCCACAGGTTAT 57.253 37.500 0.00 0.00 35.94 1.89
2330 2395 6.524734 TCTATCTATGTTGCCACAGGTTATG 58.475 40.000 0.00 0.00 35.94 1.90
2331 2396 4.568072 TCTATGTTGCCACAGGTTATGT 57.432 40.909 0.00 0.00 45.43 2.29
2332 2397 5.685520 TCTATGTTGCCACAGGTTATGTA 57.314 39.130 0.00 0.00 41.41 2.29
2333 2398 6.056090 TCTATGTTGCCACAGGTTATGTAA 57.944 37.500 0.00 0.00 41.41 2.41
2334 2399 6.658849 TCTATGTTGCCACAGGTTATGTAAT 58.341 36.000 0.00 0.00 41.41 1.89
2335 2400 7.116075 TCTATGTTGCCACAGGTTATGTAATT 58.884 34.615 0.00 0.00 41.41 1.40
2336 2401 8.268605 TCTATGTTGCCACAGGTTATGTAATTA 58.731 33.333 0.00 0.00 41.41 1.40
2337 2402 7.710676 ATGTTGCCACAGGTTATGTAATTAA 57.289 32.000 0.00 0.00 41.41 1.40
2338 2403 6.915349 TGTTGCCACAGGTTATGTAATTAAC 58.085 36.000 0.00 0.00 41.41 2.01
2339 2404 6.490381 TGTTGCCACAGGTTATGTAATTAACA 59.510 34.615 0.00 0.00 41.41 2.41
2362 2427 8.169977 ACATTTGTGGTGATATAATGATGTCC 57.830 34.615 0.00 0.00 32.15 4.02
2363 2428 7.779326 ACATTTGTGGTGATATAATGATGTCCA 59.221 33.333 0.00 0.00 32.15 4.02
2364 2429 8.631797 CATTTGTGGTGATATAATGATGTCCAA 58.368 33.333 0.00 0.00 0.00 3.53
2365 2430 8.765488 TTTGTGGTGATATAATGATGTCCAAT 57.235 30.769 0.00 0.00 0.00 3.16
2366 2431 7.748691 TGTGGTGATATAATGATGTCCAATG 57.251 36.000 0.00 0.00 0.00 2.82
2367 2432 6.716173 TGTGGTGATATAATGATGTCCAATGG 59.284 38.462 0.00 0.00 0.00 3.16
2368 2433 6.716628 GTGGTGATATAATGATGTCCAATGGT 59.283 38.462 0.00 0.00 0.00 3.55
2369 2434 7.231317 GTGGTGATATAATGATGTCCAATGGTT 59.769 37.037 0.00 0.00 0.00 3.67
2370 2435 7.784073 TGGTGATATAATGATGTCCAATGGTTT 59.216 33.333 0.00 0.00 0.00 3.27
2371 2436 8.084073 GGTGATATAATGATGTCCAATGGTTTG 58.916 37.037 0.00 0.00 0.00 2.93
2372 2437 8.849168 GTGATATAATGATGTCCAATGGTTTGA 58.151 33.333 0.00 0.00 34.60 2.69
2373 2438 9.418839 TGATATAATGATGTCCAATGGTTTGAA 57.581 29.630 0.00 0.00 34.60 2.69
2379 2444 7.537596 TGATGTCCAATGGTTTGAAAATAGT 57.462 32.000 0.00 0.00 34.60 2.12
2380 2445 8.642935 TGATGTCCAATGGTTTGAAAATAGTA 57.357 30.769 0.00 0.00 34.60 1.82
2381 2446 9.253832 TGATGTCCAATGGTTTGAAAATAGTAT 57.746 29.630 0.00 0.00 34.60 2.12
2383 2448 9.874205 ATGTCCAATGGTTTGAAAATAGTATTG 57.126 29.630 0.00 0.00 34.60 1.90
2384 2449 7.816995 TGTCCAATGGTTTGAAAATAGTATTGC 59.183 33.333 0.00 0.00 34.60 3.56
2385 2450 7.277760 GTCCAATGGTTTGAAAATAGTATTGCC 59.722 37.037 0.00 0.00 34.60 4.52
2386 2451 6.538381 CCAATGGTTTGAAAATAGTATTGCCC 59.462 38.462 0.00 0.00 34.60 5.36
2387 2452 6.865834 ATGGTTTGAAAATAGTATTGCCCA 57.134 33.333 0.00 0.00 0.00 5.36
2388 2453 6.031751 TGGTTTGAAAATAGTATTGCCCAC 57.968 37.500 0.00 0.00 0.00 4.61
2389 2454 5.777732 TGGTTTGAAAATAGTATTGCCCACT 59.222 36.000 0.00 0.00 0.00 4.00
2390 2455 6.948886 TGGTTTGAAAATAGTATTGCCCACTA 59.051 34.615 0.00 0.00 33.22 2.74
2391 2456 7.122055 TGGTTTGAAAATAGTATTGCCCACTAG 59.878 37.037 0.00 0.00 32.24 2.57
2392 2457 7.338449 GGTTTGAAAATAGTATTGCCCACTAGA 59.662 37.037 0.00 0.00 32.24 2.43
2393 2458 8.736244 GTTTGAAAATAGTATTGCCCACTAGAA 58.264 33.333 0.00 0.00 32.24 2.10
2394 2459 9.474313 TTTGAAAATAGTATTGCCCACTAGAAT 57.526 29.630 0.00 0.00 32.24 2.40
2540 2606 9.030301 AGTTTTAACATTGTAACATCTGCAAAC 57.970 29.630 4.29 0.00 32.98 2.93
2554 2620 2.645163 TGCAAACGAACAATGCTTACG 58.355 42.857 0.00 0.00 40.66 3.18
2556 2622 3.058570 TGCAAACGAACAATGCTTACGAT 60.059 39.130 0.00 0.00 40.66 3.73
2680 2746 4.002506 TCATGTGTCCGCCGCTGT 62.003 61.111 0.00 0.00 0.00 4.40
2775 2841 6.071952 ACACCCAACTAATCAAATGATGTGTC 60.072 38.462 7.29 0.00 30.79 3.67
2850 2917 9.880064 GTAATCCTTGAAAGTTTTCAGTACTTC 57.120 33.333 7.30 0.00 46.68 3.01
2865 2932 3.838317 AGTACTTCATGAACCCACTGCTA 59.162 43.478 3.38 0.00 0.00 3.49
2878 2945 6.308015 ACCCACTGCTACTTATCATGTTAA 57.692 37.500 0.00 0.00 0.00 2.01
2922 2989 1.497161 ATCGAATCCTTCCTCCCGTT 58.503 50.000 0.00 0.00 0.00 4.44
2927 2994 3.369157 CGAATCCTTCCTCCCGTTTAAGT 60.369 47.826 0.00 0.00 0.00 2.24
2949 3020 4.576053 GTGCCACATTGTGCTAATAGATCA 59.424 41.667 11.41 0.00 31.34 2.92
2951 3022 5.829391 TGCCACATTGTGCTAATAGATCAAT 59.171 36.000 11.41 0.00 31.34 2.57
2997 3068 8.881743 TCTCGTCTAGTAGAGTTTGTATTTCTC 58.118 37.037 0.00 0.00 36.03 2.87
3084 3158 5.847111 AATGCTGAAACATCATAGTGCAT 57.153 34.783 0.00 0.00 40.93 3.96
3152 3226 5.514279 ACTTTTGTTCGAGAGCAAAGAATG 58.486 37.500 13.23 8.99 41.33 2.67
3194 3268 0.394762 TCATGCCATCAACAGCTCCC 60.395 55.000 0.00 0.00 0.00 4.30
3430 3504 5.029807 TGTGTCAGTACCAAGATTGTGAA 57.970 39.130 0.00 0.00 0.00 3.18
3468 3542 3.378339 CTTGTCCTTTTGAGCTTGCTTG 58.622 45.455 0.00 0.00 0.00 4.01
3470 3544 2.099592 TGTCCTTTTGAGCTTGCTTGTG 59.900 45.455 0.00 0.00 0.00 3.33
3484 3619 2.025981 TGCTTGTGGATGCTTATGAGGT 60.026 45.455 0.00 0.00 0.00 3.85
3485 3620 3.199727 TGCTTGTGGATGCTTATGAGGTA 59.800 43.478 0.00 0.00 0.00 3.08
3486 3621 3.561725 GCTTGTGGATGCTTATGAGGTAC 59.438 47.826 0.00 0.00 0.00 3.34
3488 3623 5.453339 GCTTGTGGATGCTTATGAGGTACTA 60.453 44.000 0.00 0.00 41.55 1.82
3489 3624 5.531122 TGTGGATGCTTATGAGGTACTAC 57.469 43.478 0.00 0.00 41.55 2.73
3490 3625 5.208890 TGTGGATGCTTATGAGGTACTACT 58.791 41.667 0.00 0.00 41.55 2.57
3521 3656 6.707290 TGGTACTCTGCAAATTAAGAGCTAA 58.293 36.000 10.95 0.00 43.13 3.09
3525 3660 7.371126 ACTCTGCAAATTAAGAGCTAAGTTC 57.629 36.000 10.95 0.00 43.13 3.01
3565 3700 1.584175 ACGTTGCGGTATCACACAAA 58.416 45.000 0.00 0.00 0.00 2.83
3566 3701 2.147958 ACGTTGCGGTATCACACAAAT 58.852 42.857 0.00 0.00 0.00 2.32
3644 3781 5.788450 CCACAGTGAGGAGGAATATCATAC 58.212 45.833 0.62 0.00 0.00 2.39
3751 3888 2.302445 AGCTCAGCACTTCATCTCAGTT 59.698 45.455 0.00 0.00 0.00 3.16
3775 3913 0.322816 TGCTCCCCAACTGAAGCATC 60.323 55.000 0.00 0.00 0.00 3.91
3776 3914 0.322816 GCTCCCCAACTGAAGCATCA 60.323 55.000 0.00 0.00 0.00 3.07
3811 3955 9.831737 CTGTTGAAGATTCACTTATAACTTTGG 57.168 33.333 0.00 0.00 39.13 3.28
3822 3966 6.003950 ACTTATAACTTTGGAGAAAGCAGCA 58.996 36.000 0.00 0.00 42.19 4.41
3886 4030 6.259608 ACATTCAAGAACTGAACTCTGACAAG 59.740 38.462 0.00 0.00 46.80 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.690719 CCGCCGGTTGTAGCACCA 62.691 66.667 1.90 0.00 36.49 4.17
58 59 1.078497 CATAGCCGGTTCCAGCACA 60.078 57.895 1.90 0.00 0.00 4.57
136 138 0.467384 CTGGATGAAGCTCCGATGGT 59.533 55.000 0.00 0.00 38.21 3.55
139 141 1.068753 CGCTGGATGAAGCTCCGAT 59.931 57.895 0.00 0.00 41.24 4.18
148 150 2.093500 AGCAAACTATGTCGCTGGATGA 60.093 45.455 0.00 0.00 32.33 2.92
163 165 4.900635 AATGATTCCGGATGTAGCAAAC 57.099 40.909 4.15 0.00 0.00 2.93
332 337 1.601903 GCAAATTATGTCGCCGGATGA 59.398 47.619 5.05 0.00 0.00 2.92
427 432 3.962421 GCATCCCGAGCTGCATGC 61.962 66.667 11.82 11.82 43.29 4.06
537 563 1.576421 CTTCGTTTGCCAGCAGTCC 59.424 57.895 0.00 0.00 0.00 3.85
644 670 2.359230 GCTCGTCCTTGGCTGCTT 60.359 61.111 0.00 0.00 0.00 3.91
761 791 0.617820 AGGATTAGGCCACGTCCTGT 60.618 55.000 18.68 0.30 39.54 4.00
833 863 8.998277 ATACACATCTATAATCTATAGGCCGT 57.002 34.615 0.00 0.00 38.88 5.68
834 864 9.900710 GAATACACATCTATAATCTATAGGCCG 57.099 37.037 0.00 0.00 38.88 6.13
869 899 7.754851 TTTAGTCCGGCTATCTTTTCTTTTT 57.245 32.000 0.00 0.00 0.00 1.94
870 900 7.754851 TTTTAGTCCGGCTATCTTTTCTTTT 57.245 32.000 0.00 0.00 0.00 2.27
871 901 7.309012 GGTTTTTAGTCCGGCTATCTTTTCTTT 60.309 37.037 0.00 0.00 0.00 2.52
872 902 6.150641 GGTTTTTAGTCCGGCTATCTTTTCTT 59.849 38.462 0.00 0.00 0.00 2.52
873 903 5.646793 GGTTTTTAGTCCGGCTATCTTTTCT 59.353 40.000 0.00 0.00 0.00 2.52
874 904 5.646793 AGGTTTTTAGTCCGGCTATCTTTTC 59.353 40.000 0.00 0.00 0.00 2.29
875 905 5.567430 AGGTTTTTAGTCCGGCTATCTTTT 58.433 37.500 0.00 0.00 0.00 2.27
876 906 5.175388 AGGTTTTTAGTCCGGCTATCTTT 57.825 39.130 0.00 0.00 0.00 2.52
896 926 2.415893 CCGAAACATGGCTAAAGCAAGG 60.416 50.000 4.07 0.00 44.36 3.61
947 978 0.178964 CCAGGACCTTTGGGCTTCAA 60.179 55.000 0.00 0.00 35.63 2.69
961 992 0.692756 TCGTCCATATTGGGCCAGGA 60.693 55.000 6.23 7.31 39.48 3.86
992 1023 6.904463 TTATGACAGATATACCAGGCGTTA 57.096 37.500 0.00 0.00 0.00 3.18
1029 1069 3.562108 TCTAAAACCTCCAGGGACTCT 57.438 47.619 0.00 0.00 34.60 3.24
1038 1078 1.136500 ACGGCGAGATCTAAAACCTCC 59.864 52.381 16.62 0.00 0.00 4.30
1245 1288 1.357334 GACGAGACAGGGATCGAGC 59.643 63.158 1.13 0.00 41.40 5.03
1267 1310 6.418057 ACCTGAGACCATAGAATTCAGATC 57.582 41.667 8.44 0.00 37.96 2.75
1274 1317 2.320781 CCCGACCTGAGACCATAGAAT 58.679 52.381 0.00 0.00 0.00 2.40
1278 1321 1.760875 GCCCCGACCTGAGACCATA 60.761 63.158 0.00 0.00 0.00 2.74
1281 1324 3.003763 AAGCCCCGACCTGAGACC 61.004 66.667 0.00 0.00 0.00 3.85
1283 1326 0.325296 ATACAAGCCCCGACCTGAGA 60.325 55.000 0.00 0.00 0.00 3.27
1286 1329 0.541863 AAGATACAAGCCCCGACCTG 59.458 55.000 0.00 0.00 0.00 4.00
1314 1357 4.618920 ACCGACCTAATCACTGTTTTCT 57.381 40.909 0.00 0.00 0.00 2.52
1335 1379 2.493675 GTCAGAGGAGCACACATGAGTA 59.506 50.000 0.00 0.00 0.00 2.59
1347 1391 3.134574 ACGCCTAGATAGTCAGAGGAG 57.865 52.381 0.00 0.00 35.25 3.69
1374 1418 1.804601 AGTAACTTTTTCCTCCGCCG 58.195 50.000 0.00 0.00 0.00 6.46
1404 1448 2.281070 ACTGCCCAAGTGCGACAG 60.281 61.111 0.00 0.00 37.88 3.51
1453 1499 3.223435 GCACTAGTCCTATGGAGCACTA 58.777 50.000 0.00 0.00 29.39 2.74
1461 1511 3.992260 ACTAAGCGCACTAGTCCTATG 57.008 47.619 11.47 0.00 0.00 2.23
1466 1516 2.924290 CTGGAAACTAAGCGCACTAGTC 59.076 50.000 18.96 10.02 0.00 2.59
1493 1543 5.083533 TGCAAACTCACAAAAATCCTGTT 57.916 34.783 0.00 0.00 0.00 3.16
1523 1573 3.788434 TCTCGCGTGATTTGAAACTTC 57.212 42.857 5.77 0.00 0.00 3.01
1566 1616 8.458573 TGGTTTCAACTATCTAAGCAAAAGAA 57.541 30.769 0.00 0.00 0.00 2.52
1568 1618 8.099364 TCTGGTTTCAACTATCTAAGCAAAAG 57.901 34.615 0.00 0.00 0.00 2.27
1591 1642 6.152323 ACTGCAATGCATTGAAACTAATCTCT 59.848 34.615 37.36 8.16 40.14 3.10
1634 1685 2.271944 AGCCACTCAAACCCAAGTAC 57.728 50.000 0.00 0.00 0.00 2.73
1635 1686 4.331968 CAATAGCCACTCAAACCCAAGTA 58.668 43.478 0.00 0.00 0.00 2.24
1650 1701 2.880890 ACTCGAAATCCATGCAATAGCC 59.119 45.455 0.00 0.00 41.13 3.93
1651 1702 3.363378 CGACTCGAAATCCATGCAATAGC 60.363 47.826 0.00 0.00 42.57 2.97
1652 1703 3.363378 GCGACTCGAAATCCATGCAATAG 60.363 47.826 1.63 0.00 0.00 1.73
1653 1704 2.543848 GCGACTCGAAATCCATGCAATA 59.456 45.455 1.63 0.00 0.00 1.90
1654 1705 1.331756 GCGACTCGAAATCCATGCAAT 59.668 47.619 1.63 0.00 0.00 3.56
1655 1706 0.726827 GCGACTCGAAATCCATGCAA 59.273 50.000 1.63 0.00 0.00 4.08
1656 1707 0.108186 AGCGACTCGAAATCCATGCA 60.108 50.000 1.63 0.00 0.00 3.96
1657 1708 0.579156 GAGCGACTCGAAATCCATGC 59.421 55.000 1.63 0.00 0.00 4.06
1698 1749 8.695284 CATATTTTTGCGACTCATAGACTAGTC 58.305 37.037 15.41 15.41 39.00 2.59
1699 1750 7.653713 CCATATTTTTGCGACTCATAGACTAGT 59.346 37.037 0.00 0.00 0.00 2.57
1700 1751 7.653713 ACCATATTTTTGCGACTCATAGACTAG 59.346 37.037 0.00 0.00 0.00 2.57
1701 1752 7.497595 ACCATATTTTTGCGACTCATAGACTA 58.502 34.615 0.00 0.00 0.00 2.59
1702 1753 6.349300 ACCATATTTTTGCGACTCATAGACT 58.651 36.000 0.00 0.00 0.00 3.24
1703 1754 6.562270 CGACCATATTTTTGCGACTCATAGAC 60.562 42.308 0.00 0.00 0.00 2.59
1704 1755 5.462068 CGACCATATTTTTGCGACTCATAGA 59.538 40.000 0.00 0.00 0.00 1.98
1705 1756 5.462068 TCGACCATATTTTTGCGACTCATAG 59.538 40.000 0.00 0.00 0.00 2.23
1706 1757 5.233476 GTCGACCATATTTTTGCGACTCATA 59.767 40.000 3.51 0.00 43.18 2.15
1707 1758 4.034048 GTCGACCATATTTTTGCGACTCAT 59.966 41.667 3.51 0.00 43.18 2.90
1708 1759 3.369756 GTCGACCATATTTTTGCGACTCA 59.630 43.478 3.51 0.00 43.18 3.41
1709 1760 3.924610 GTCGACCATATTTTTGCGACTC 58.075 45.455 3.51 0.00 43.18 3.36
1711 1762 3.369756 TGAGTCGACCATATTTTTGCGAC 59.630 43.478 13.01 0.00 45.83 5.19
1712 1763 3.591023 TGAGTCGACCATATTTTTGCGA 58.409 40.909 13.01 0.00 0.00 5.10
1713 1764 3.785505 GCTGAGTCGACCATATTTTTGCG 60.786 47.826 13.01 0.00 0.00 4.85
1714 1765 3.375299 AGCTGAGTCGACCATATTTTTGC 59.625 43.478 13.01 7.80 0.00 3.68
1715 1766 5.551760 AAGCTGAGTCGACCATATTTTTG 57.448 39.130 13.01 0.00 0.00 2.44
1716 1767 6.313905 CACTAAGCTGAGTCGACCATATTTTT 59.686 38.462 13.01 1.53 0.00 1.94
1717 1768 5.812642 CACTAAGCTGAGTCGACCATATTTT 59.187 40.000 13.01 3.16 0.00 1.82
1718 1769 5.105310 ACACTAAGCTGAGTCGACCATATTT 60.105 40.000 13.01 4.77 0.00 1.40
1719 1770 4.402793 ACACTAAGCTGAGTCGACCATATT 59.597 41.667 13.01 9.73 0.00 1.28
1720 1771 3.954904 ACACTAAGCTGAGTCGACCATAT 59.045 43.478 13.01 0.00 0.00 1.78
1721 1772 3.353557 ACACTAAGCTGAGTCGACCATA 58.646 45.455 13.01 0.00 0.00 2.74
1722 1773 2.164624 GACACTAAGCTGAGTCGACCAT 59.835 50.000 13.01 0.00 0.00 3.55
1723 1774 1.540267 GACACTAAGCTGAGTCGACCA 59.460 52.381 13.01 9.18 0.00 4.02
1724 1775 2.265647 GACACTAAGCTGAGTCGACC 57.734 55.000 13.01 4.42 0.00 4.79
1728 1779 2.474856 CGAGTCGACACTAAGCTGAGTC 60.475 54.545 19.50 0.00 30.63 3.36
1729 1780 1.465387 CGAGTCGACACTAAGCTGAGT 59.535 52.381 19.50 0.00 30.63 3.41
1730 1781 1.792273 GCGAGTCGACACTAAGCTGAG 60.792 57.143 18.61 0.00 34.91 3.35
1731 1782 0.168348 GCGAGTCGACACTAAGCTGA 59.832 55.000 18.61 0.00 34.91 4.26
1732 1783 1.128724 CGCGAGTCGACACTAAGCTG 61.129 60.000 18.61 7.91 41.67 4.24
1733 1784 1.134901 CGCGAGTCGACACTAAGCT 59.865 57.895 18.61 0.00 41.67 3.74
1734 1785 1.134075 TCGCGAGTCGACACTAAGC 59.866 57.895 18.61 13.51 43.16 3.09
1742 1793 0.374063 GACTCAGATTCGCGAGTCGA 59.626 55.000 23.47 20.88 46.20 4.20
1743 1794 2.848213 GACTCAGATTCGCGAGTCG 58.152 57.895 23.47 18.27 46.20 4.18
1750 1801 1.328069 ACTAGTCGCGACTCAGATTCG 59.672 52.381 42.28 23.65 42.54 3.34
1751 1802 2.352034 TGACTAGTCGCGACTCAGATTC 59.648 50.000 42.28 27.62 42.54 2.52
1752 1803 2.096174 GTGACTAGTCGCGACTCAGATT 59.904 50.000 42.28 21.41 42.54 2.40
1753 1804 1.666700 GTGACTAGTCGCGACTCAGAT 59.333 52.381 42.28 26.17 42.54 2.90
1754 1805 1.077123 GTGACTAGTCGCGACTCAGA 58.923 55.000 42.28 25.68 42.54 3.27
1755 1806 0.796927 TGTGACTAGTCGCGACTCAG 59.203 55.000 42.28 33.82 42.66 3.35
1756 1807 1.069432 GTTGTGACTAGTCGCGACTCA 60.069 52.381 42.28 31.02 46.04 3.41
1757 1808 1.604396 GTTGTGACTAGTCGCGACTC 58.396 55.000 42.28 28.88 46.04 3.36
1758 1809 3.769228 GTTGTGACTAGTCGCGACT 57.231 52.632 40.17 40.17 46.04 4.18
1760 1811 0.664224 TGTGTTGTGACTAGTCGCGA 59.336 50.000 26.76 23.69 42.66 5.87
1761 1812 1.053048 CTGTGTTGTGACTAGTCGCG 58.947 55.000 26.76 11.21 42.66 5.87
1762 1813 1.419374 CCTGTGTTGTGACTAGTCGC 58.581 55.000 26.18 26.18 40.32 5.19
1763 1814 1.000163 AGCCTGTGTTGTGACTAGTCG 60.000 52.381 17.85 1.64 0.00 4.18
1764 1815 2.678324 GAGCCTGTGTTGTGACTAGTC 58.322 52.381 16.32 16.32 0.00 2.59
1765 1816 1.000163 CGAGCCTGTGTTGTGACTAGT 60.000 52.381 0.00 0.00 0.00 2.57
1766 1817 1.269723 TCGAGCCTGTGTTGTGACTAG 59.730 52.381 0.00 0.00 0.00 2.57
1767 1818 1.000607 GTCGAGCCTGTGTTGTGACTA 60.001 52.381 0.00 0.00 0.00 2.59
1768 1819 0.249489 GTCGAGCCTGTGTTGTGACT 60.249 55.000 0.00 0.00 0.00 3.41
1769 1820 0.249489 AGTCGAGCCTGTGTTGTGAC 60.249 55.000 0.00 0.00 0.00 3.67
1770 1821 0.464036 AAGTCGAGCCTGTGTTGTGA 59.536 50.000 0.00 0.00 0.00 3.58
1771 1822 0.861837 GAAGTCGAGCCTGTGTTGTG 59.138 55.000 0.00 0.00 0.00 3.33
1772 1823 0.753262 AGAAGTCGAGCCTGTGTTGT 59.247 50.000 0.00 0.00 0.00 3.32
1773 1824 1.795286 GAAGAAGTCGAGCCTGTGTTG 59.205 52.381 0.00 0.00 0.00 3.33
1774 1825 1.270358 GGAAGAAGTCGAGCCTGTGTT 60.270 52.381 0.00 0.00 0.00 3.32
1775 1826 0.318762 GGAAGAAGTCGAGCCTGTGT 59.681 55.000 0.00 0.00 0.00 3.72
1776 1827 0.734253 CGGAAGAAGTCGAGCCTGTG 60.734 60.000 0.00 0.00 0.00 3.66
1777 1828 0.894184 TCGGAAGAAGTCGAGCCTGT 60.894 55.000 0.00 0.00 37.03 4.00
1778 1829 0.179150 CTCGGAAGAAGTCGAGCCTG 60.179 60.000 0.00 0.00 44.68 4.85
1779 1830 2.185238 CTCGGAAGAAGTCGAGCCT 58.815 57.895 0.00 0.00 44.68 4.58
1780 1831 4.796225 CTCGGAAGAAGTCGAGCC 57.204 61.111 0.00 0.00 44.68 4.70
1785 1836 1.073768 GCAGCGACTCGGAAGAAGTC 61.074 60.000 0.00 0.00 41.32 3.01
1786 1837 1.080434 GCAGCGACTCGGAAGAAGT 60.080 57.895 0.00 0.00 41.32 3.01
1787 1838 0.800300 GAGCAGCGACTCGGAAGAAG 60.800 60.000 0.00 0.00 41.32 2.85
1788 1839 1.213013 GAGCAGCGACTCGGAAGAA 59.787 57.895 0.00 0.00 41.32 2.52
1789 1840 2.701780 GGAGCAGCGACTCGGAAGA 61.702 63.158 0.00 0.00 37.57 2.87
1790 1841 2.202676 GGAGCAGCGACTCGGAAG 60.203 66.667 0.00 0.00 37.57 3.46
1791 1842 2.989253 TGGAGCAGCGACTCGGAA 60.989 61.111 0.00 0.00 37.57 4.30
1792 1843 3.443925 CTGGAGCAGCGACTCGGA 61.444 66.667 0.00 0.00 37.57 4.55
1793 1844 3.408501 CTCTGGAGCAGCGACTCGG 62.409 68.421 0.00 0.28 37.57 4.63
1794 1845 2.101965 CTCTGGAGCAGCGACTCG 59.898 66.667 0.00 0.00 37.57 4.18
1826 1877 1.419922 CCATGGTTTTCGAGTCGCG 59.580 57.895 7.92 0.00 42.69 5.87
1827 1878 1.794222 CCCATGGTTTTCGAGTCGC 59.206 57.895 11.73 0.00 0.00 5.19
1828 1879 0.673644 AGCCCATGGTTTTCGAGTCG 60.674 55.000 11.73 6.09 0.00 4.18
1829 1880 2.396590 TAGCCCATGGTTTTCGAGTC 57.603 50.000 11.73 0.00 0.00 3.36
1830 1881 3.016736 CAATAGCCCATGGTTTTCGAGT 58.983 45.455 11.73 0.00 0.00 4.18
1831 1882 3.016736 ACAATAGCCCATGGTTTTCGAG 58.983 45.455 11.73 0.00 0.00 4.04
1832 1883 2.752354 CACAATAGCCCATGGTTTTCGA 59.248 45.455 11.73 0.00 0.00 3.71
1833 1884 2.159254 CCACAATAGCCCATGGTTTTCG 60.159 50.000 11.73 0.00 0.00 3.46
1834 1885 2.831526 ACCACAATAGCCCATGGTTTTC 59.168 45.455 11.73 0.00 42.98 2.29
1835 1886 2.831526 GACCACAATAGCCCATGGTTTT 59.168 45.455 11.73 0.00 45.55 2.43
1836 1887 2.456577 GACCACAATAGCCCATGGTTT 58.543 47.619 11.73 0.26 45.55 3.27
1837 1888 1.681780 CGACCACAATAGCCCATGGTT 60.682 52.381 11.73 0.66 45.55 3.67
1839 1890 0.819259 CCGACCACAATAGCCCATGG 60.819 60.000 4.14 4.14 38.26 3.66
1840 1891 0.180171 TCCGACCACAATAGCCCATG 59.820 55.000 0.00 0.00 0.00 3.66
1841 1892 1.140312 ATCCGACCACAATAGCCCAT 58.860 50.000 0.00 0.00 0.00 4.00
1842 1893 0.916086 AATCCGACCACAATAGCCCA 59.084 50.000 0.00 0.00 0.00 5.36
1843 1894 2.922740 TAATCCGACCACAATAGCCC 57.077 50.000 0.00 0.00 0.00 5.19
1864 1915 3.381908 CGAACCTAACTCAGCTAGGTGAT 59.618 47.826 24.03 13.48 46.92 3.06
1965 2016 6.373186 AGCTAAAAGACTAAACCACACAAC 57.627 37.500 0.00 0.00 0.00 3.32
1972 2023 8.831550 CCATCTGAATAGCTAAAAGACTAAACC 58.168 37.037 0.00 0.00 0.00 3.27
2000 2052 8.750515 TGATAAAAGACCATTGCATCTGAATA 57.249 30.769 0.00 0.00 0.00 1.75
2007 2059 6.542005 TCGTACATGATAAAAGACCATTGCAT 59.458 34.615 0.00 0.00 0.00 3.96
2012 2064 7.492669 CACTTCTCGTACATGATAAAAGACCAT 59.507 37.037 0.00 0.00 0.00 3.55
2014 2066 6.237861 GCACTTCTCGTACATGATAAAAGACC 60.238 42.308 0.00 0.00 0.00 3.85
2021 2073 5.576447 TCTTGCACTTCTCGTACATGATA 57.424 39.130 0.00 0.00 0.00 2.15
2024 2076 3.740832 TGTTCTTGCACTTCTCGTACATG 59.259 43.478 0.00 0.00 0.00 3.21
2025 2077 3.990092 TGTTCTTGCACTTCTCGTACAT 58.010 40.909 0.00 0.00 0.00 2.29
2031 2096 8.333908 CAGATAACATATGTTCTTGCACTTCTC 58.666 37.037 24.00 2.10 39.31 2.87
2084 2149 6.076981 ACCTCAAACAGCAATTTAGTGAAG 57.923 37.500 0.00 0.00 0.00 3.02
2092 2157 5.471456 CAGAGAGTAACCTCAAACAGCAATT 59.529 40.000 0.00 0.00 40.40 2.32
2103 2168 5.794894 TGGAACAATTCAGAGAGTAACCTC 58.205 41.667 0.00 0.00 34.30 3.85
2169 2234 5.745312 AGACACAATCACCTAGATGTTCA 57.255 39.130 0.00 0.00 36.96 3.18
2174 2239 6.051717 GCAACATAGACACAATCACCTAGAT 58.948 40.000 0.00 0.00 39.09 1.98
2279 2344 6.072649 TCCCGACTATATACACAAGGATGAA 58.927 40.000 0.00 0.00 0.00 2.57
2281 2346 5.477291 ACTCCCGACTATATACACAAGGATG 59.523 44.000 0.00 0.00 0.00 3.51
2282 2347 5.642165 ACTCCCGACTATATACACAAGGAT 58.358 41.667 0.00 0.00 0.00 3.24
2283 2348 5.057843 ACTCCCGACTATATACACAAGGA 57.942 43.478 0.00 0.00 0.00 3.36
2284 2349 5.535406 AGAACTCCCGACTATATACACAAGG 59.465 44.000 0.00 0.00 0.00 3.61
2286 2351 8.162085 AGATAGAACTCCCGACTATATACACAA 58.838 37.037 0.00 0.00 0.00 3.33
2288 2353 9.835389 ATAGATAGAACTCCCGACTATATACAC 57.165 37.037 0.00 0.00 0.00 2.90
2289 2354 9.833917 CATAGATAGAACTCCCGACTATATACA 57.166 37.037 0.00 0.00 0.00 2.29
2290 2355 9.835389 ACATAGATAGAACTCCCGACTATATAC 57.165 37.037 0.00 0.00 0.00 1.47
2292 2357 9.179909 CAACATAGATAGAACTCCCGACTATAT 57.820 37.037 0.00 0.00 0.00 0.86
2293 2358 7.120873 GCAACATAGATAGAACTCCCGACTATA 59.879 40.741 0.00 0.00 0.00 1.31
2294 2359 6.071840 GCAACATAGATAGAACTCCCGACTAT 60.072 42.308 0.00 0.00 0.00 2.12
2295 2360 5.241064 GCAACATAGATAGAACTCCCGACTA 59.759 44.000 0.00 0.00 0.00 2.59
2296 2361 4.038162 GCAACATAGATAGAACTCCCGACT 59.962 45.833 0.00 0.00 0.00 4.18
2297 2362 4.299978 GCAACATAGATAGAACTCCCGAC 58.700 47.826 0.00 0.00 0.00 4.79
2298 2363 3.321111 GGCAACATAGATAGAACTCCCGA 59.679 47.826 0.00 0.00 0.00 5.14
2299 2364 3.069586 TGGCAACATAGATAGAACTCCCG 59.930 47.826 0.00 0.00 46.17 5.14
2300 2365 4.689612 TGGCAACATAGATAGAACTCCC 57.310 45.455 0.00 0.00 46.17 4.30
2312 2377 8.679100 GTTAATTACATAACCTGTGGCAACATA 58.321 33.333 0.00 0.00 38.15 2.29
2313 2378 7.177568 TGTTAATTACATAACCTGTGGCAACAT 59.822 33.333 0.00 0.00 40.98 2.71
2314 2379 6.490381 TGTTAATTACATAACCTGTGGCAACA 59.510 34.615 0.00 0.00 38.92 3.33
2315 2380 6.915349 TGTTAATTACATAACCTGTGGCAAC 58.085 36.000 0.00 0.00 38.92 4.17
2316 2381 7.710676 ATGTTAATTACATAACCTGTGGCAA 57.289 32.000 0.00 0.00 45.62 4.52
2317 2382 7.710676 AATGTTAATTACATAACCTGTGGCA 57.289 32.000 0.00 0.00 46.75 4.92
2318 2383 8.032451 ACAAATGTTAATTACATAACCTGTGGC 58.968 33.333 0.00 0.00 46.75 5.01
2319 2384 9.352784 CACAAATGTTAATTACATAACCTGTGG 57.647 33.333 11.98 0.00 46.75 4.17
2320 2385 9.352784 CCACAAATGTTAATTACATAACCTGTG 57.647 33.333 12.45 12.45 46.75 3.66
2321 2386 9.084533 ACCACAAATGTTAATTACATAACCTGT 57.915 29.630 0.00 0.00 46.75 4.00
2322 2387 9.352784 CACCACAAATGTTAATTACATAACCTG 57.647 33.333 0.00 0.00 46.75 4.00
2323 2388 9.303116 TCACCACAAATGTTAATTACATAACCT 57.697 29.630 0.00 0.00 46.75 3.50
2336 2401 8.632679 GGACATCATTATATCACCACAAATGTT 58.367 33.333 0.00 0.00 0.00 2.71
2337 2402 7.779326 TGGACATCATTATATCACCACAAATGT 59.221 33.333 0.00 0.00 0.00 2.71
2338 2403 8.168790 TGGACATCATTATATCACCACAAATG 57.831 34.615 0.00 0.00 0.00 2.32
2339 2404 8.765488 TTGGACATCATTATATCACCACAAAT 57.235 30.769 0.00 0.00 0.00 2.32
2340 2405 8.631797 CATTGGACATCATTATATCACCACAAA 58.368 33.333 0.00 0.00 0.00 2.83
2341 2406 7.231115 CCATTGGACATCATTATATCACCACAA 59.769 37.037 0.00 0.00 0.00 3.33
2342 2407 6.716173 CCATTGGACATCATTATATCACCACA 59.284 38.462 0.00 0.00 0.00 4.17
2343 2408 6.716628 ACCATTGGACATCATTATATCACCAC 59.283 38.462 10.37 0.00 0.00 4.16
2344 2409 6.851318 ACCATTGGACATCATTATATCACCA 58.149 36.000 10.37 0.00 0.00 4.17
2345 2410 7.765695 AACCATTGGACATCATTATATCACC 57.234 36.000 10.37 0.00 0.00 4.02
2346 2411 8.849168 TCAAACCATTGGACATCATTATATCAC 58.151 33.333 10.37 0.00 37.15 3.06
2347 2412 8.993404 TCAAACCATTGGACATCATTATATCA 57.007 30.769 10.37 0.00 37.15 2.15
2353 2418 8.596293 ACTATTTTCAAACCATTGGACATCATT 58.404 29.630 10.37 0.00 37.15 2.57
2354 2419 8.137745 ACTATTTTCAAACCATTGGACATCAT 57.862 30.769 10.37 0.00 37.15 2.45
2355 2420 7.537596 ACTATTTTCAAACCATTGGACATCA 57.462 32.000 10.37 0.00 37.15 3.07
2357 2422 9.874205 CAATACTATTTTCAAACCATTGGACAT 57.126 29.630 10.37 0.00 37.15 3.06
2358 2423 7.816995 GCAATACTATTTTCAAACCATTGGACA 59.183 33.333 10.37 0.00 37.15 4.02
2359 2424 7.277760 GGCAATACTATTTTCAAACCATTGGAC 59.722 37.037 10.37 0.00 37.15 4.02
2360 2425 7.327214 GGCAATACTATTTTCAAACCATTGGA 58.673 34.615 10.37 0.00 37.15 3.53
2361 2426 6.538381 GGGCAATACTATTTTCAAACCATTGG 59.462 38.462 0.00 0.00 37.15 3.16
2362 2427 7.064490 GTGGGCAATACTATTTTCAAACCATTG 59.936 37.037 0.00 0.00 37.92 2.82
2363 2428 7.038373 AGTGGGCAATACTATTTTCAAACCATT 60.038 33.333 0.00 0.00 0.00 3.16
2364 2429 6.440328 AGTGGGCAATACTATTTTCAAACCAT 59.560 34.615 0.00 0.00 0.00 3.55
2365 2430 5.777732 AGTGGGCAATACTATTTTCAAACCA 59.222 36.000 0.00 0.00 0.00 3.67
2366 2431 6.280855 AGTGGGCAATACTATTTTCAAACC 57.719 37.500 0.00 0.00 0.00 3.27
2367 2432 8.276252 TCTAGTGGGCAATACTATTTTCAAAC 57.724 34.615 0.00 0.00 30.83 2.93
2368 2433 8.871629 TTCTAGTGGGCAATACTATTTTCAAA 57.128 30.769 0.00 0.00 30.83 2.69
2372 2437 9.350951 GGTTATTCTAGTGGGCAATACTATTTT 57.649 33.333 0.00 0.00 30.83 1.82
2373 2438 7.942894 GGGTTATTCTAGTGGGCAATACTATTT 59.057 37.037 0.00 0.00 30.83 1.40
2374 2439 7.294958 AGGGTTATTCTAGTGGGCAATACTATT 59.705 37.037 0.00 0.00 30.83 1.73
2375 2440 6.792977 AGGGTTATTCTAGTGGGCAATACTAT 59.207 38.462 0.00 0.00 30.83 2.12
2376 2441 6.148186 AGGGTTATTCTAGTGGGCAATACTA 58.852 40.000 0.00 0.00 0.00 1.82
2377 2442 4.975794 AGGGTTATTCTAGTGGGCAATACT 59.024 41.667 0.00 0.00 0.00 2.12
2378 2443 5.306114 AGGGTTATTCTAGTGGGCAATAC 57.694 43.478 0.00 0.00 0.00 1.89
2379 2444 5.987019 AAGGGTTATTCTAGTGGGCAATA 57.013 39.130 0.00 0.00 0.00 1.90
2380 2445 4.881157 AAGGGTTATTCTAGTGGGCAAT 57.119 40.909 0.00 0.00 0.00 3.56
2381 2446 4.786454 ACTAAGGGTTATTCTAGTGGGCAA 59.214 41.667 0.00 0.00 0.00 4.52
2382 2447 4.368067 ACTAAGGGTTATTCTAGTGGGCA 58.632 43.478 0.00 0.00 0.00 5.36
2383 2448 4.202336 GGACTAAGGGTTATTCTAGTGGGC 60.202 50.000 0.00 0.00 0.00 5.36
2384 2449 5.217400 AGGACTAAGGGTTATTCTAGTGGG 58.783 45.833 0.00 0.00 0.00 4.61
2385 2450 6.156429 ACAAGGACTAAGGGTTATTCTAGTGG 59.844 42.308 0.00 0.00 0.00 4.00
2386 2451 7.042335 CACAAGGACTAAGGGTTATTCTAGTG 58.958 42.308 0.00 0.00 0.00 2.74
2387 2452 6.729569 ACACAAGGACTAAGGGTTATTCTAGT 59.270 38.462 0.00 0.00 0.00 2.57
2388 2453 7.184067 ACACAAGGACTAAGGGTTATTCTAG 57.816 40.000 0.00 0.00 0.00 2.43
2389 2454 8.849543 ATACACAAGGACTAAGGGTTATTCTA 57.150 34.615 0.00 0.00 0.00 2.10
2390 2455 7.750947 ATACACAAGGACTAAGGGTTATTCT 57.249 36.000 0.00 0.00 0.00 2.40
2393 2458 9.893975 ACTATATACACAAGGACTAAGGGTTAT 57.106 33.333 0.00 0.00 0.00 1.89
2394 2459 9.359653 GACTATATACACAAGGACTAAGGGTTA 57.640 37.037 0.00 0.00 0.00 2.85
2395 2460 7.014038 CGACTATATACACAAGGACTAAGGGTT 59.986 40.741 0.00 0.00 0.00 4.11
2396 2461 6.489361 CGACTATATACACAAGGACTAAGGGT 59.511 42.308 0.00 0.00 0.00 4.34
2397 2462 6.072064 CCGACTATATACACAAGGACTAAGGG 60.072 46.154 0.00 0.00 0.00 3.95
2520 2586 5.431420 TCGTTTGCAGATGTTACAATGTT 57.569 34.783 0.00 0.00 0.00 2.71
2539 2605 3.911964 GCAAAATCGTAAGCATTGTTCGT 59.088 39.130 0.00 0.00 37.18 3.85
2540 2606 4.158384 AGCAAAATCGTAAGCATTGTTCG 58.842 39.130 0.00 0.00 37.18 3.95
2554 2620 6.892310 AGACTGAAACAACAAAGCAAAATC 57.108 33.333 0.00 0.00 0.00 2.17
2556 2622 5.797934 CGTAGACTGAAACAACAAAGCAAAA 59.202 36.000 0.00 0.00 0.00 2.44
2629 2695 1.446272 CAGCGTCTTCCTCCGGAAC 60.446 63.158 5.23 0.00 36.71 3.62
2680 2746 0.320771 GCTTCAGGAACTTCTCGGCA 60.321 55.000 0.00 0.00 34.60 5.69
2756 2822 5.126061 GCAGGGACACATCATTTGATTAGTT 59.874 40.000 0.00 0.00 31.21 2.24
2775 2841 0.113190 AGAAACTTGAAGGGGCAGGG 59.887 55.000 0.00 0.00 0.00 4.45
2850 2917 4.769688 TGATAAGTAGCAGTGGGTTCATG 58.230 43.478 0.00 0.00 0.00 3.07
2922 2989 6.176896 TCTATTAGCACAATGTGGCACTTAA 58.823 36.000 19.83 3.03 33.64 1.85
2927 2994 4.779696 TGATCTATTAGCACAATGTGGCA 58.220 39.130 15.78 0.00 33.64 4.92
2997 3068 8.252417 TCCATGAATGTGACCAAAATAAGATTG 58.748 33.333 0.00 0.00 0.00 2.67
3001 3072 8.004087 AGATCCATGAATGTGACCAAAATAAG 57.996 34.615 0.00 0.00 0.00 1.73
3014 3085 8.503458 ACTAAAGAAGTTGAGATCCATGAATG 57.497 34.615 0.00 0.00 33.35 2.67
3084 3158 2.487762 CAAAAGGCGCCTTTACAGATCA 59.512 45.455 45.26 0.00 44.50 2.92
3152 3226 1.535028 TGTTCATGTGCATCGTCCAAC 59.465 47.619 0.00 0.00 0.00 3.77
3313 3387 2.760650 TGTAAAACAATGCACACCCACA 59.239 40.909 0.00 0.00 0.00 4.17
3430 3504 4.210331 GACAAGGGGATGCATAGAACAAT 58.790 43.478 0.00 0.00 0.00 2.71
3468 3542 5.793030 AGTAGTACCTCATAAGCATCCAC 57.207 43.478 0.00 0.00 0.00 4.02
3470 3544 7.762588 TTCTAGTAGTACCTCATAAGCATCC 57.237 40.000 0.00 0.00 0.00 3.51
3484 3619 7.949690 TGCAGAGTACCATTTTCTAGTAGTA 57.050 36.000 0.00 0.00 0.00 1.82
3485 3620 6.852420 TGCAGAGTACCATTTTCTAGTAGT 57.148 37.500 0.00 0.00 0.00 2.73
3486 3621 8.723942 ATTTGCAGAGTACCATTTTCTAGTAG 57.276 34.615 0.00 0.00 0.00 2.57
3488 3623 9.515226 TTAATTTGCAGAGTACCATTTTCTAGT 57.485 29.630 0.00 0.00 0.00 2.57
3489 3624 9.994432 CTTAATTTGCAGAGTACCATTTTCTAG 57.006 33.333 0.00 0.00 0.00 2.43
3490 3625 9.733556 TCTTAATTTGCAGAGTACCATTTTCTA 57.266 29.630 0.00 0.00 0.00 2.10
3521 3656 1.915141 CCACAAATGCTCTGGGAACT 58.085 50.000 0.00 0.00 0.00 3.01
3525 3660 2.062971 ATAGCCACAAATGCTCTGGG 57.937 50.000 0.00 0.00 40.23 4.45
3644 3781 2.494073 AGGTCTCCAGAACGAAAGCTAG 59.506 50.000 0.00 0.00 36.72 3.42
3775 3913 6.703607 AGTGAATCTTCAACAGTGTAAGTCTG 59.296 38.462 0.00 0.00 39.21 3.51
3776 3914 6.821388 AGTGAATCTTCAACAGTGTAAGTCT 58.179 36.000 0.00 0.00 39.21 3.24
3777 3915 7.484035 AAGTGAATCTTCAACAGTGTAAGTC 57.516 36.000 0.00 0.00 39.21 3.01
3806 3950 0.239347 CCGTGCTGCTTTCTCCAAAG 59.761 55.000 0.00 0.00 41.92 2.77
3807 3951 1.795170 GCCGTGCTGCTTTCTCCAAA 61.795 55.000 0.00 0.00 0.00 3.28
3811 3955 0.242017 AATTGCCGTGCTGCTTTCTC 59.758 50.000 0.00 0.00 0.00 2.87
3822 3966 3.928375 GCAAATTTGATCAGAATTGCCGT 59.072 39.130 22.33 4.45 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.