AutoCloner

Multiple sequence alignment - TraesCS5B01G087100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G087100	chr5B	100.000	2948	0	0	1	2948	111678329	111681276	0.000000e+00	5445
1	TraesCS5B01G087100	chr5B	87.351	672	71	13	3	668	598290258	598289595	0.000000e+00	758
2	TraesCS5B01G087100	chr5A	91.296	2137	99	39	875	2948	97561626	97563738	0.000000e+00	2835
3	TraesCS5B01G087100	chr5A	87.041	872	109	4	1	869	309043417	309044287	0.000000e+00	981
4	TraesCS5B01G087100	chr5D	94.444	1674	53	21	875	2529	102274455	102276107	0.000000e+00	2540
5	TraesCS5B01G087100	chr5D	87.258	879	97	10	1	869	529263952	529263079	0.000000e+00	989
6	TraesCS5B01G087100	chr5D	96.212	396	15	0	2553	2948	102276186	102276581	0.000000e+00	649
7	TraesCS5B01G087100	chr3B	86.437	870	94	12	2	867	642092389	642091540	0.000000e+00	931
8	TraesCS5B01G087100	chr6D	91.515	660	54	2	1	659	299904550	299905208	0.000000e+00	907
9	TraesCS5B01G087100	chr6D	84.337	249	24	5	623	869	299905234	299905469	2.290000e-56	230
10	TraesCS5B01G087100	chr7A	85.747	884	92	15	1	869	612997720	612996856	0.000000e+00	904
11	TraesCS5B01G087100	chr1A	86.634	808	99	7	1	805	559833707	559832906	0.000000e+00	885
12	TraesCS5B01G087100	chr2A	88.872	665	70	4	1	664	694866742	694867403	0.000000e+00	815
13	TraesCS5B01G087100	chr7D	89.127	653	69	2	1	652	532920783	532920132	0.000000e+00	811
14	TraesCS5B01G087100	chr7D	89.236	641	66	3	2	641	602210355	602209717	0.000000e+00	798
15	TraesCS5B01G087100	chr7D	79.681	251	28	12	621	869	532920104	532919875	3.040000e-35	159
16	TraesCS5B01G087100	chr4A	83.034	890	108	32	1	869	192728951	192728084	0.000000e+00	767
17	TraesCS5B01G087100	chr6B	83.462	260	37	3	616	869	711548	711289	1.370000e-58	237
18	TraesCS5B01G087100	chr2D	92.424	132	9	1	2818	2948	610858375	610858244	1.400000e-43	187

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G087100	chr5B	111678329	111681276	2947	False	5445.0	5445	100.000	1	2948	1	chr5B.!!$F1	2947
1	TraesCS5B01G087100	chr5B	598289595	598290258	663	True	758.0	758	87.351	3	668	1	chr5B.!!$R1	665
2	TraesCS5B01G087100	chr5A	97561626	97563738	2112	False	2835.0	2835	91.296	875	2948	1	chr5A.!!$F1	2073
3	TraesCS5B01G087100	chr5A	309043417	309044287	870	False	981.0	981	87.041	1	869	1	chr5A.!!$F2	868
4	TraesCS5B01G087100	chr5D	102274455	102276581	2126	False	1594.5	2540	95.328	875	2948	2	chr5D.!!$F1	2073
5	TraesCS5B01G087100	chr5D	529263079	529263952	873	True	989.0	989	87.258	1	869	1	chr5D.!!$R1	868
6	TraesCS5B01G087100	chr3B	642091540	642092389	849	True	931.0	931	86.437	2	867	1	chr3B.!!$R1	865
7	TraesCS5B01G087100	chr6D	299904550	299905469	919	False	568.5	907	87.926	1	869	2	chr6D.!!$F1	868
8	TraesCS5B01G087100	chr7A	612996856	612997720	864	True	904.0	904	85.747	1	869	1	chr7A.!!$R1	868
9	TraesCS5B01G087100	chr1A	559832906	559833707	801	True	885.0	885	86.634	1	805	1	chr1A.!!$R1	804
10	TraesCS5B01G087100	chr2A	694866742	694867403	661	False	815.0	815	88.872	1	664	1	chr2A.!!$F1	663
11	TraesCS5B01G087100	chr7D	602209717	602210355	638	True	798.0	798	89.236	2	641	1	chr7D.!!$R1	639
12	TraesCS5B01G087100	chr7D	532919875	532920783	908	True	485.0	811	84.404	1	869	2	chr7D.!!$R2	868
13	TraesCS5B01G087100	chr4A	192728084	192728951	867	True	767.0	767	83.034	1	869	1	chr4A.!!$R1	868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
978	1137	0.391927	CGAGACTCAGACGACCTCCT	60.392	60.0	2.82	0.0	0.0	3.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2243	2445	0.322816	GCTCCCCAACTGAAGCATCA	60.323	55.0	0.0	0.0	0.0	3.07	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	1.612442	AGGTACCACCAGCCGACAT	60.612	57.895	15.94	0.00	41.95	3.06
95	96	2.872408	CCGACCAGGCATGACAAAT	58.128	52.632	0.00	0.00	0.00	2.32
109	110	2.036604	TGACAAATCGTAGCACCTGTCA	59.963	45.455	0.00	0.00	40.49	3.58
165	166	1.448540	CAAGACGAAGCCGCTCCAT	60.449	57.895	0.00	0.00	39.95	3.41
195	196	1.142097	GACTTCCAGCGCTACTCCC	59.858	63.158	10.99	0.00	0.00	4.30
203	204	2.098831	GCGCTACTCCCCAAACGAC	61.099	63.158	0.00	0.00	0.00	4.34
274	276	2.435203	ACCAGAACCTAGGGTTTCCT	57.565	50.000	14.81	0.00	46.95	3.36
309	311	4.557205	GAGTGGGTCAACAGTAGTTACAG	58.443	47.826	0.00	0.00	35.85	2.74
388	391	3.993920	GGTTTTCACCGGTAACTCTGTA	58.006	45.455	6.87	0.00	31.60	2.74
490	497	4.338710	GGCCACCACCAACGGCTA	62.339	66.667	0.00	0.00	45.50	3.93
495	502	2.359478	CCACCAACGGCTACACCC	60.359	66.667	0.00	0.00	33.26	4.61
497	504	1.546589	CCACCAACGGCTACACCCTA	61.547	60.000	0.00	0.00	33.26	3.53
546	558	2.930019	CACTCCACCAGGCCCTCA	60.930	66.667	0.00	0.00	33.74	3.86
668	769	1.355916	GCTTCGCTAGATCGACCGT	59.644	57.895	0.00	0.00	38.30	4.83
670	824	0.656259	CTTCGCTAGATCGACCGTGA	59.344	55.000	0.00	0.00	38.30	4.35
679	833	1.604147	ATCGACCGTGACTCCATGCA	61.604	55.000	0.00	0.00	0.00	3.96
806	961	2.285144	GAAGGGAGGGGGTTCGGA	60.285	66.667	0.00	0.00	0.00	4.55
897	1053	7.806409	TGACATGATCACATCGGATAAAAAT	57.194	32.000	0.00	0.00	34.15	1.82
899	1055	8.773645	TGACATGATCACATCGGATAAAAATAC	58.226	33.333	0.00	0.00	34.15	1.89
912	1071	7.771361	TCGGATAAAAATACTAGGCAATCACAA	59.229	33.333	0.00	0.00	0.00	3.33
913	1072	8.070171	CGGATAAAAATACTAGGCAATCACAAG	58.930	37.037	0.00	0.00	0.00	3.16
914	1073	9.120538	GGATAAAAATACTAGGCAATCACAAGA	57.879	33.333	0.00	0.00	0.00	3.02
916	1075	9.905713	ATAAAAATACTAGGCAATCACAAGAGA	57.094	29.630	0.00	0.00	0.00	3.10
917	1076	8.814038	AAAAATACTAGGCAATCACAAGAGAT	57.186	30.769	0.00	0.00	0.00	2.75
950	1109	1.478105	GAAGAAATGGTGCCATGTCCC	59.522	52.381	15.75	6.68	40.60	4.46
956	1115	2.351276	GTGCCATGTCCCGTCCTT	59.649	61.111	0.00	0.00	0.00	3.36
957	1116	1.745489	GTGCCATGTCCCGTCCTTC	60.745	63.158	0.00	0.00	0.00	3.46
959	1118	2.590092	CCATGTCCCGTCCTTCCC	59.410	66.667	0.00	0.00	0.00	3.97
978	1137	0.391927	CGAGACTCAGACGACCTCCT	60.392	60.000	2.82	0.00	0.00	3.69
1018	1177	0.681733	TGCCTCTTCTCCACACTCAC	59.318	55.000	0.00	0.00	0.00	3.51
1019	1178	0.036858	GCCTCTTCTCCACACTCACC	60.037	60.000	0.00	0.00	0.00	4.02
1020	1179	1.342074	CCTCTTCTCCACACTCACCA	58.658	55.000	0.00	0.00	0.00	4.17
1021	1180	1.274728	CCTCTTCTCCACACTCACCAG	59.725	57.143	0.00	0.00	0.00	4.00
1098	1257	3.444818	AACCCAAGGCGGCCAAGAA	62.445	57.895	23.09	0.00	0.00	2.52
1126	1285	3.139077	GTCGTCCAAGTCCAAGAAACAT	58.861	45.455	0.00	0.00	0.00	2.71
1240	1399	3.649986	GCGCACTTCAAGCCGTGT	61.650	61.111	0.30	0.00	33.78	4.49
1348	1507	2.436292	CTCCGAGTCGTCGTCCCT	60.436	66.667	12.31	0.00	45.30	4.20
1528	1687	1.209383	CTTCGTCTTCGAGTCGGCA	59.791	57.895	13.54	0.00	46.81	5.69
1603	1762	4.083862	GGAAAGCGCCTCCTCCGT	62.084	66.667	16.93	0.00	0.00	4.69
1810	1969	1.153765	TCAGAGGAGCATTGACGCG	60.154	57.895	3.53	3.53	36.85	6.01
1927	2094	9.499585	GTGATTAATTTCTGAATGTGACATCTG	57.500	33.333	0.00	0.00	0.00	2.90
1972	2140	4.583907	TGTTTTGTGGATTGAGATGCTGAA	59.416	37.500	0.00	0.00	0.00	3.02
2032	2200	3.398318	TGGCCTCAGGAGATGTAACTA	57.602	47.619	3.32	0.00	0.00	2.24
2038	2206	6.451393	GCCTCAGGAGATGTAACTACAATAG	58.549	44.000	0.00	0.00	39.99	1.73
2039	2207	6.451393	CCTCAGGAGATGTAACTACAATAGC	58.549	44.000	0.00	0.00	39.99	2.97
2040	2208	6.040955	CCTCAGGAGATGTAACTACAATAGCA	59.959	42.308	0.00	0.00	39.99	3.49
2042	2210	8.706322	TCAGGAGATGTAACTACAATAGCATA	57.294	34.615	0.00	0.00	39.99	3.14
2044	2212	9.579768	CAGGAGATGTAACTACAATAGCATATC	57.420	37.037	0.00	0.00	39.99	1.63
2084	2266	1.481772	AGCTGATCTTGGCTCTCTCAC	59.518	52.381	0.00	0.00	32.98	3.51
2099	2295	4.899502	TCTCTCACCCTTTGATTCTTCAC	58.100	43.478	0.00	0.00	32.17	3.18
2133	2329	7.133891	AGATACATGCTTGAAGTACACAAAC	57.866	36.000	6.60	0.00	0.00	2.93
2197	2399	3.928375	GCAAATTTGATCAGAATTGCCGT	59.072	39.130	22.33	4.45	0.00	5.68
2208	2410	0.242017	AATTGCCGTGCTGCTTTCTC	59.758	50.000	0.00	0.00	0.00	2.87
2212	2414	1.795170	GCCGTGCTGCTTTCTCCAAA	61.795	55.000	0.00	0.00	0.00	3.28
2213	2415	0.239347	CCGTGCTGCTTTCTCCAAAG	59.761	55.000	0.00	0.00	41.92	2.77
2242	2444	7.484035	AAGTGAATCTTCAACAGTGTAAGTC	57.516	36.000	0.00	0.00	39.21	3.01
2243	2445	6.821388	AGTGAATCTTCAACAGTGTAAGTCT	58.179	36.000	0.00	0.00	39.21	3.24
2244	2446	6.703607	AGTGAATCTTCAACAGTGTAAGTCTG	59.296	38.462	0.00	0.00	39.21	3.51
2375	2584	2.494073	AGGTCTCCAGAACGAAAGCTAG	59.506	50.000	0.00	0.00	36.72	3.42
2450	2661	6.071221	TGCCACTGAATGATTGCTTCTATTTT	60.071	34.615	0.00	0.00	0.00	1.82
2451	2662	7.122501	TGCCACTGAATGATTGCTTCTATTTTA	59.877	33.333	0.00	0.00	0.00	1.52
2494	2705	2.062971	ATAGCCACAAATGCTCTGGG	57.937	50.000	0.00	0.00	40.23	4.45
2498	2709	1.915141	CCACAAATGCTCTGGGAACT	58.085	50.000	0.00	0.00	0.00	3.01
2529	2740	9.733556	TCTTAATTTGCAGAGTACCATTTTCTA	57.266	29.630	0.00	0.00	0.00	2.10
2530	2741	9.994432	CTTAATTTGCAGAGTACCATTTTCTAG	57.006	33.333	0.00	0.00	0.00	2.43
2531	2742	9.515226	TTAATTTGCAGAGTACCATTTTCTAGT	57.485	29.630	0.00	0.00	0.00	2.57
2533	2744	8.723942	ATTTGCAGAGTACCATTTTCTAGTAG	57.276	34.615	0.00	0.00	0.00	2.57
2534	2745	6.852420	TGCAGAGTACCATTTTCTAGTAGT	57.148	37.500	0.00	0.00	0.00	2.73
2535	2746	7.949690	TGCAGAGTACCATTTTCTAGTAGTA	57.050	36.000	0.00	0.00	0.00	1.82
2547	2758	9.988815	CATTTTCTAGTAGTACCTCATAAGCAT	57.011	33.333	0.00	0.00	0.00	3.79
2549	2760	7.762588	TTCTAGTAGTACCTCATAAGCATCC	57.237	40.000	0.00	0.00	0.00	3.51
2589	2861	4.210331	GACAAGGGGATGCATAGAACAAT	58.790	43.478	0.00	0.00	0.00	2.71
2706	2978	2.760650	TGTAAAACAATGCACACCCACA	59.239	40.909	0.00	0.00	0.00	4.17
2867	3139	1.535028	TGTTCATGTGCATCGTCCAAC	59.465	47.619	0.00	0.00	0.00	3.77
2935	3207	2.487762	CAAAAGGCGCCTTTACAGATCA	59.512	45.455	45.26	0.00	44.50	2.92

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
19	20	0.104304	CTATGTCGGCTGGTGGTACC	59.896	60.000	4.43	4.43	39.22	3.34
36	37	5.126869	CAGATCTTCCAGAGACTTCAAGCTA	59.873	44.000	0.00	0.00	37.17	3.32
95	96	1.877576	CTGGCTGACAGGTGCTACGA	61.878	60.000	1.48	0.00	43.70	3.43
109	110	0.330604	ATGTCAAGTCATGCCTGGCT	59.669	50.000	21.03	2.27	39.63	4.75
165	166	2.621929	GCTGGAAGTCAGAGGTAGGAGA	60.622	54.545	0.00	0.00	46.18	3.71
195	196	1.291877	CTCTTGGGAGCGTCGTTTGG	61.292	60.000	0.00	0.00	32.43	3.28
203	204	0.243907	TCGTTTCTCTCTTGGGAGCG	59.756	55.000	0.00	0.00	39.31	5.03
274	276	4.056125	CACTCGTGCTGCTCCGGA	62.056	66.667	2.93	2.93	0.00	5.14
379	382	3.705051	ACGAGTTGGGGATACAGAGTTA	58.295	45.455	0.00	0.00	39.74	2.24
388	391	2.432300	CCGGCTACGAGTTGGGGAT	61.432	63.158	0.00	0.00	44.60	3.85
531	542	2.352805	GTTGAGGGCCTGGTGGAG	59.647	66.667	12.95	0.00	34.57	3.86
557	569	2.609299	TCATCCGGCCTTGGGTCA	60.609	61.111	0.00	0.00	0.00	4.02
560	572	2.438434	GTGTCATCCGGCCTTGGG	60.438	66.667	0.00	0.00	0.00	4.12
668	769	0.839277	CCCCTATGTGCATGGAGTCA	59.161	55.000	0.00	0.00	0.00	3.41
670	824	1.999634	GCCCCCTATGTGCATGGAGT	62.000	60.000	0.00	0.00	0.00	3.85
873	1029	7.806409	ATTTTTATCCGATGTGATCATGTCA	57.194	32.000	0.00	0.00	34.06	3.58
897	1053	6.324770	TCATCATCTCTTGTGATTGCCTAGTA	59.675	38.462	0.00	0.00	34.21	1.82
899	1055	5.608449	TCATCATCTCTTGTGATTGCCTAG	58.392	41.667	0.00	0.00	34.21	3.02
916	1075	9.374838	GCACCATTTCTTCTTTTATTTCATCAT	57.625	29.630	0.00	0.00	0.00	2.45
917	1076	7.818930	GGCACCATTTCTTCTTTTATTTCATCA	59.181	33.333	0.00	0.00	0.00	3.07
950	1109	0.677098	TCTGAGTCTCGGGAAGGACG	60.677	60.000	8.86	0.00	37.52	4.79
956	1115	1.376942	GGTCGTCTGAGTCTCGGGA	60.377	63.158	8.86	0.32	0.00	5.14
957	1116	1.370587	GAGGTCGTCTGAGTCTCGGG	61.371	65.000	8.86	0.00	0.00	5.14
959	1118	0.391927	AGGAGGTCGTCTGAGTCTCG	60.392	60.000	0.00	0.00	0.00	4.04
1018	1177	1.106285	GGTTTATGCCTTGGAGCTGG	58.894	55.000	0.00	0.00	0.00	4.85
1019	1178	2.019984	GAGGTTTATGCCTTGGAGCTG	58.980	52.381	0.00	0.00	39.34	4.24
1020	1179	1.918957	AGAGGTTTATGCCTTGGAGCT	59.081	47.619	0.00	0.00	39.34	4.09
1021	1180	2.293170	GAGAGGTTTATGCCTTGGAGC	58.707	52.381	0.00	0.00	39.34	4.70
1098	1257	0.031721	GGACTTGGACGACGACTTGT	59.968	55.000	0.00	0.00	0.00	3.16
1368	1527	2.140138	GCCCCTTTGCCCTTTGTGT	61.140	57.895	0.00	0.00	0.00	3.72
1372	1531	4.932105	TGCGCCCCTTTGCCCTTT	62.932	61.111	4.18	0.00	0.00	3.11
1420	1579	1.472728	GCGAAGTTGGTCGGGATGTAT	60.473	52.381	0.00	0.00	41.40	2.29
1870	2030	9.846248	CAGAACAAAAGAAAAAGAAAGAAGAGA	57.154	29.630	0.00	0.00	0.00	3.10
1871	2031	9.080915	CCAGAACAAAAGAAAAAGAAAGAAGAG	57.919	33.333	0.00	0.00	0.00	2.85
2032	2200	6.252599	TCCAACCTGAAGATATGCTATTGT	57.747	37.500	0.00	0.00	0.00	2.71
2038	2206	5.452356	CCCATTTTCCAACCTGAAGATATGC	60.452	44.000	0.00	0.00	0.00	3.14
2039	2207	5.893255	TCCCATTTTCCAACCTGAAGATATG	59.107	40.000	0.00	0.00	0.00	1.78
2040	2208	6.091076	TCCCATTTTCCAACCTGAAGATAT	57.909	37.500	0.00	0.00	0.00	1.63
2042	2210	4.402616	TCCCATTTTCCAACCTGAAGAT	57.597	40.909	0.00	0.00	0.00	2.40
2044	2212	3.306294	GCTTCCCATTTTCCAACCTGAAG	60.306	47.826	0.00	0.00	0.00	3.02
2046	2214	2.158325	AGCTTCCCATTTTCCAACCTGA	60.158	45.455	0.00	0.00	0.00	3.86
2084	2266	2.095567	CACAGCGTGAAGAATCAAAGGG	60.096	50.000	3.04	0.00	37.30	3.95
2099	2295	0.848942	GCATGTATCTCGTCACAGCG	59.151	55.000	0.00	0.00	0.00	5.18
2133	2329	6.259608	ACATTCAAGAACTGAACTCTGACAAG	59.740	38.462	0.00	0.00	46.80	3.16
2197	2399	6.003950	ACTTATAACTTTGGAGAAAGCAGCA	58.996	36.000	0.00	0.00	42.19	4.41
2208	2410	9.831737	CTGTTGAAGATTCACTTATAACTTTGG	57.168	33.333	0.00	0.00	39.13	3.28
2243	2445	0.322816	GCTCCCCAACTGAAGCATCA	60.323	55.000	0.00	0.00	0.00	3.07
2244	2446	0.322816	TGCTCCCCAACTGAAGCATC	60.323	55.000	0.00	0.00	0.00	3.91
2268	2477	2.302445	AGCTCAGCACTTCATCTCAGTT	59.698	45.455	0.00	0.00	0.00	3.16
2375	2584	5.788450	CCACAGTGAGGAGGAATATCATAC	58.212	45.833	0.62	0.00	0.00	2.39
2450	2661	5.110598	ACGTTGCGGTATCACACAAATATA	58.889	37.500	0.00	0.00	0.00	0.86
2451	2662	3.936453	ACGTTGCGGTATCACACAAATAT	59.064	39.130	0.00	0.00	0.00	1.28
2494	2705	7.371126	ACTCTGCAAATTAAGAGCTAAGTTC	57.629	36.000	10.95	0.00	43.13	3.01
2498	2709	6.707290	TGGTACTCTGCAAATTAAGAGCTAA	58.293	36.000	10.95	0.00	43.13	3.09
2529	2740	5.208890	TGTGGATGCTTATGAGGTACTACT	58.791	41.667	0.00	0.00	41.55	2.57
2530	2741	5.531122	TGTGGATGCTTATGAGGTACTAC	57.469	43.478	0.00	0.00	41.55	2.73
2531	2742	5.453339	GCTTGTGGATGCTTATGAGGTACTA	60.453	44.000	0.00	0.00	41.55	1.82
2533	2744	3.561725	GCTTGTGGATGCTTATGAGGTAC	59.438	47.826	0.00	0.00	0.00	3.34
2534	2745	3.199727	TGCTTGTGGATGCTTATGAGGTA	59.800	43.478	0.00	0.00	0.00	3.08
2535	2746	2.025981	TGCTTGTGGATGCTTATGAGGT	60.026	45.455	0.00	0.00	0.00	3.85
2547	2758	1.682854	CCTTTTGAGCTTGCTTGTGGA	59.317	47.619	0.00	0.00	0.00	4.02
2548	2759	1.682854	TCCTTTTGAGCTTGCTTGTGG	59.317	47.619	0.00	0.00	0.00	4.17
2549	2760	2.099592	TGTCCTTTTGAGCTTGCTTGTG	59.900	45.455	0.00	0.00	0.00	3.33
2589	2861	5.029807	TGTGTCAGTACCAAGATTGTGAA	57.970	39.130	0.00	0.00	0.00	3.18
2825	3097	0.394762	TCATGCCATCAACAGCTCCC	60.395	55.000	0.00	0.00	0.00	4.30
2867	3139	5.514279	ACTTTTGTTCGAGAGCAAAGAATG	58.486	37.500	13.23	8.99	41.33	2.67

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.