Multiple sequence alignment - TraesCS5B01G086600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G086600 chr5B 100.000 4267 0 0 1 4267 110112585 110116851 0.000000e+00 7880
1 TraesCS5B01G086600 chr5B 96.528 288 10 0 3500 3787 217039541 217039254 1.070000e-130 477
2 TraesCS5B01G086600 chr5B 77.736 265 47 8 960 1213 109889050 109888787 7.390000e-33 152
3 TraesCS5B01G086600 chr5D 97.324 3176 58 12 365 3518 101697791 101700961 0.000000e+00 5369
4 TraesCS5B01G086600 chr5D 89.947 378 26 5 3895 4267 101701549 101701919 1.070000e-130 477
5 TraesCS5B01G086600 chr5D 96.825 252 8 0 1 252 101697542 101697793 5.100000e-114 422
6 TraesCS5B01G086600 chr5D 78.491 265 45 8 960 1213 101460633 101460370 3.410000e-36 163
7 TraesCS5B01G086600 chr5A 96.195 3075 78 26 365 3420 98454200 98451146 0.000000e+00 4994
8 TraesCS5B01G086600 chr5A 91.870 369 20 5 3904 4267 98448523 98448160 1.370000e-139 507
9 TraesCS5B01G086600 chr5A 96.429 252 9 0 1 252 98454449 98454198 2.370000e-112 416
10 TraesCS5B01G086600 chr5A 96.262 107 3 1 3412 3518 98449191 98449086 1.580000e-39 174
11 TraesCS5B01G086600 chr5A 78.491 265 45 8 960 1213 98978640 98978903 3.410000e-36 163
12 TraesCS5B01G086600 chr5A 90.826 109 6 2 3787 3895 98449092 98448988 4.450000e-30 143
13 TraesCS5B01G086600 chr1B 98.644 295 1 2 3499 3790 345769251 345769545 1.760000e-143 520
14 TraesCS5B01G086600 chr1B 99.273 275 2 0 3513 3787 453767972 453768246 8.240000e-137 497
15 TraesCS5B01G086600 chr2B 98.925 279 3 0 3511 3789 423828007 423827729 2.290000e-137 499
16 TraesCS5B01G086600 chr2B 98.921 278 2 1 3513 3790 772821594 772821318 2.960000e-136 496
17 TraesCS5B01G086600 chr2B 96.610 118 4 0 250 367 652617954 652618071 3.370000e-46 196
18 TraesCS5B01G086600 chr2A 97.924 289 5 1 3501 3789 412028237 412028524 2.290000e-137 499
19 TraesCS5B01G086600 chr3A 97.569 288 6 1 3507 3794 20323731 20324017 3.830000e-135 492
20 TraesCS5B01G086600 chr2D 97.213 287 8 0 3511 3797 625246740 625246454 1.780000e-133 486
21 TraesCS5B01G086600 chr7B 96.886 289 9 0 3499 3787 365650086 365649798 6.410000e-133 484
22 TraesCS5B01G086600 chr7B 94.444 126 6 1 242 367 537792913 537793037 4.350000e-45 193
23 TraesCS5B01G086600 chr3B 96.639 119 4 0 249 367 93248792 93248910 9.360000e-47 198
24 TraesCS5B01G086600 chr3B 91.367 139 8 4 237 373 483569759 483569895 2.030000e-43 187
25 TraesCS5B01G086600 chr4A 95.798 119 5 0 249 367 514565302 514565420 4.350000e-45 193
26 TraesCS5B01G086600 chr1D 93.798 129 7 1 246 373 401658588 401658460 4.350000e-45 193
27 TraesCS5B01G086600 chr3D 95.041 121 6 0 253 373 525280482 525280362 1.570000e-44 191
28 TraesCS5B01G086600 chr4D 94.309 123 7 0 246 368 500825031 500825153 5.630000e-44 189
29 TraesCS5B01G086600 chr7D 94.262 122 7 0 246 367 433882948 433883069 2.030000e-43 187


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G086600 chr5B 110112585 110116851 4266 False 7880.000000 7880 100.000000 1 4267 1 chr5B.!!$F1 4266
1 TraesCS5B01G086600 chr5D 101697542 101701919 4377 False 2089.333333 5369 94.698667 1 4267 3 chr5D.!!$F1 4266
2 TraesCS5B01G086600 chr5A 98448160 98454449 6289 True 1246.800000 4994 94.316400 1 4267 5 chr5A.!!$R1 4266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
266 267 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.0 0.00 4.30 F
362 363 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.0 46.06 4.30 F
363 364 1.047034 AGTATTTCCGGACGGAGGGG 61.047 60.000 13.64 0.0 46.06 4.79 F
1167 1182 1.673920 GAAAACCTCCAGCAACGACAA 59.326 47.619 0.00 0.0 0.00 3.18 F
2202 2225 2.102578 GGCACACCCAAGATTAATGCT 58.897 47.619 0.00 0.0 0.00 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1551 1567 0.651551 GAGATTCAAGCTCTGCTGCG 59.348 55.000 0.00 0.00 39.62 5.18 R
2202 2225 2.295909 CCAGATTGCCGTTTCCTTTTCA 59.704 45.455 0.00 0.00 0.00 2.69 R
2452 2475 1.757118 CTAAGATCAGCGAACCCCTGA 59.243 52.381 0.00 0.00 42.91 3.86 R
2955 2978 1.375268 GCTCTCACTGTGAGTGGCC 60.375 63.158 30.74 16.43 45.94 5.36 R
3631 5626 0.029834 GCATTGGGAAGCGCTATGTG 59.970 55.000 12.05 5.56 33.74 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 4.746611 CCTCACCACTTTTTGCTGAATTTC 59.253 41.667 0.00 0.00 0.00 2.17
97 98 4.386867 TTTCCATAAGCTGGTACTCTCG 57.613 45.455 0.00 0.00 46.08 4.04
115 116 7.659652 ACTCTCGCTATTTGAAAATATAGGC 57.340 36.000 0.00 0.00 31.03 3.93
123 124 8.836413 GCTATTTGAAAATATAGGCCGCATATA 58.164 33.333 7.19 7.19 31.03 0.86
238 239 8.902540 AGTACTTTGACTTCACACATGATTTA 57.097 30.769 0.00 0.00 33.85 1.40
250 251 9.890629 TTCACACATGATTTAGATTAGCTAAGT 57.109 29.630 12.54 4.44 40.05 2.24
256 257 9.646427 CATGATTTAGATTAGCTAAGTACTCCC 57.354 37.037 12.54 0.51 40.05 4.30
257 258 9.608718 ATGATTTAGATTAGCTAAGTACTCCCT 57.391 33.333 12.54 0.00 40.05 4.20
258 259 9.080097 TGATTTAGATTAGCTAAGTACTCCCTC 57.920 37.037 12.54 2.03 40.05 4.30
259 260 7.836479 TTTAGATTAGCTAAGTACTCCCTCC 57.164 40.000 12.54 0.00 40.05 4.30
260 261 4.400120 AGATTAGCTAAGTACTCCCTCCG 58.600 47.826 12.54 0.00 0.00 4.63
261 262 3.659183 TTAGCTAAGTACTCCCTCCGT 57.341 47.619 0.86 0.00 0.00 4.69
262 263 2.055684 AGCTAAGTACTCCCTCCGTC 57.944 55.000 0.00 0.00 0.00 4.79
263 264 1.031235 GCTAAGTACTCCCTCCGTCC 58.969 60.000 0.00 0.00 0.00 4.79
264 265 1.307097 CTAAGTACTCCCTCCGTCCG 58.693 60.000 0.00 0.00 0.00 4.79
265 266 0.911769 TAAGTACTCCCTCCGTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
266 267 0.038744 AAGTACTCCCTCCGTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
267 268 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
268 269 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
269 270 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
270 271 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
271 272 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
272 273 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
273 274 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
274 275 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
275 276 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
276 277 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
277 278 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
278 279 1.060122 CCGTCCGAAAATACTTGTCGC 59.940 52.381 0.00 0.00 33.46 5.19
279 280 1.722464 CGTCCGAAAATACTTGTCGCA 59.278 47.619 0.00 0.00 33.46 5.10
280 281 2.156117 CGTCCGAAAATACTTGTCGCAA 59.844 45.455 0.00 0.00 33.46 4.85
281 282 3.363182 CGTCCGAAAATACTTGTCGCAAA 60.363 43.478 0.00 0.00 33.46 3.68
282 283 4.529446 GTCCGAAAATACTTGTCGCAAAA 58.471 39.130 0.00 0.00 33.46 2.44
283 284 4.971220 GTCCGAAAATACTTGTCGCAAAAA 59.029 37.500 0.00 0.00 33.46 1.94
284 285 5.627780 GTCCGAAAATACTTGTCGCAAAAAT 59.372 36.000 0.00 0.00 33.46 1.82
285 286 5.627367 TCCGAAAATACTTGTCGCAAAAATG 59.373 36.000 0.00 0.00 33.46 2.32
286 287 5.164100 CCGAAAATACTTGTCGCAAAAATGG 60.164 40.000 0.00 0.00 33.46 3.16
287 288 5.627367 CGAAAATACTTGTCGCAAAAATGGA 59.373 36.000 0.00 0.00 0.00 3.41
288 289 6.307800 CGAAAATACTTGTCGCAAAAATGGAT 59.692 34.615 0.00 0.00 0.00 3.41
289 290 7.483375 CGAAAATACTTGTCGCAAAAATGGATA 59.517 33.333 0.00 0.00 0.00 2.59
290 291 8.460831 AAAATACTTGTCGCAAAAATGGATAC 57.539 30.769 0.00 0.00 0.00 2.24
310 311 7.945134 GGATACAAATGGATGCATCTAAAACT 58.055 34.615 25.28 2.21 0.00 2.66
311 312 9.066892 GGATACAAATGGATGCATCTAAAACTA 57.933 33.333 25.28 9.42 0.00 2.24
339 340 6.522625 ACATCTAGATACATCCATTCCTCG 57.477 41.667 4.54 0.00 0.00 4.63
340 341 5.420421 ACATCTAGATACATCCATTCCTCGG 59.580 44.000 4.54 0.00 0.00 4.63
341 342 5.256806 TCTAGATACATCCATTCCTCGGA 57.743 43.478 0.00 0.00 36.84 4.55
342 343 5.010933 TCTAGATACATCCATTCCTCGGAC 58.989 45.833 0.00 0.00 34.69 4.79
343 344 3.576861 AGATACATCCATTCCTCGGACA 58.423 45.455 0.00 0.00 34.69 4.02
344 345 3.967326 AGATACATCCATTCCTCGGACAA 59.033 43.478 0.00 0.00 34.69 3.18
345 346 2.698855 ACATCCATTCCTCGGACAAG 57.301 50.000 0.00 0.00 34.69 3.16
346 347 1.909302 ACATCCATTCCTCGGACAAGT 59.091 47.619 0.00 0.00 34.69 3.16
347 348 3.104512 ACATCCATTCCTCGGACAAGTA 58.895 45.455 0.00 0.00 34.69 2.24
348 349 3.711704 ACATCCATTCCTCGGACAAGTAT 59.288 43.478 0.00 0.00 34.69 2.12
349 350 4.164221 ACATCCATTCCTCGGACAAGTATT 59.836 41.667 0.00 0.00 34.69 1.89
350 351 4.837093 TCCATTCCTCGGACAAGTATTT 57.163 40.909 0.00 0.00 0.00 1.40
351 352 4.766375 TCCATTCCTCGGACAAGTATTTC 58.234 43.478 0.00 0.00 0.00 2.17
352 353 3.877508 CCATTCCTCGGACAAGTATTTCC 59.122 47.826 0.00 0.00 0.00 3.13
358 359 1.648504 GGACAAGTATTTCCGGACGG 58.351 55.000 1.83 3.96 0.00 4.79
359 360 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
360 361 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
361 362 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
362 363 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
363 364 1.047034 AGTATTTCCGGACGGAGGGG 61.047 60.000 13.64 0.00 46.06 4.79
549 550 3.146066 CTGGTTTTGTGAAATCGGAGGA 58.854 45.455 0.00 0.00 34.74 3.71
569 570 2.789213 AGGAAAGCCTCTCTTTTGCTC 58.211 47.619 0.00 0.00 42.19 4.26
570 571 2.107204 AGGAAAGCCTCTCTTTTGCTCA 59.893 45.455 0.00 0.00 42.19 4.26
571 572 2.887152 GGAAAGCCTCTCTTTTGCTCAA 59.113 45.455 0.00 0.00 44.58 3.02
1113 1128 2.291209 TCATGGACTGTGTTGGCATT 57.709 45.000 0.00 0.00 0.00 3.56
1167 1182 1.673920 GAAAACCTCCAGCAACGACAA 59.326 47.619 0.00 0.00 0.00 3.18
1376 1392 2.462456 TCTGCAAAGCGAGAGTTCAT 57.538 45.000 0.00 0.00 0.00 2.57
1440 1456 6.202954 ACTTTTTCTGGTCAGTCAAGAATACG 59.797 38.462 10.91 0.00 0.00 3.06
1458 1474 7.101054 AGAATACGTAATAAACCTGACAAGCA 58.899 34.615 0.00 0.00 0.00 3.91
1551 1567 6.403092 GCCTCACTAAAAAGAATGAAGAGCTC 60.403 42.308 5.27 5.27 0.00 4.09
1802 1825 7.704472 CACCTTAATGTTTACTTGTCTGCAAAA 59.296 33.333 0.00 0.00 33.73 2.44
2202 2225 2.102578 GGCACACCCAAGATTAATGCT 58.897 47.619 0.00 0.00 0.00 3.79
2308 2331 4.067972 AGGTTTAAACACTGAGCTCGAA 57.932 40.909 19.57 0.00 0.00 3.71
2388 2411 6.979465 TCTCTGTTGATATCAGATACAGCAG 58.021 40.000 22.92 20.16 40.46 4.24
2462 2485 4.760204 AGAAGTTTGTATTTCAGGGGTTCG 59.240 41.667 0.00 0.00 0.00 3.95
2573 2596 2.669569 TGCCTGCCGAAGAAGCAC 60.670 61.111 0.00 0.00 36.01 4.40
2574 2597 2.669569 GCCTGCCGAAGAAGCACA 60.670 61.111 0.00 0.00 36.01 4.57
2745 2768 3.179443 TGCGGTCTATCAGTTGATTCC 57.821 47.619 0.00 1.37 36.05 3.01
2751 2774 5.994054 CGGTCTATCAGTTGATTCCAATGAT 59.006 40.000 6.05 6.05 36.04 2.45
2955 2978 6.205464 TCTGGAATTACAAGTGCAAGAGAAAG 59.795 38.462 0.00 0.00 0.00 2.62
3059 3082 5.062528 TGACTGCATGAGTTTAACATGTCA 58.937 37.500 0.00 0.00 44.52 3.58
3114 3137 4.520111 TGTGATTGGAGTCATGTTTTCAGG 59.480 41.667 0.00 0.00 0.00 3.86
3188 3211 4.632688 GTGCAATGCATTTCATTAGCCTTT 59.367 37.500 14.82 0.00 43.21 3.11
3226 3249 5.359009 AGTTGCATTGGAAGACATGATTAGG 59.641 40.000 0.00 0.00 0.00 2.69
3462 5457 0.890683 CATTCAGGTGCTCCCAAACC 59.109 55.000 0.00 0.00 36.66 3.27
3467 5462 0.188342 AGGTGCTCCCAAACCAATGT 59.812 50.000 0.00 0.00 39.05 2.71
3473 5468 1.269448 CTCCCAAACCAATGTGAACCG 59.731 52.381 0.00 0.00 0.00 4.44
3514 5509 7.228507 TGCCAAACTAATATGTACTGCATTAGG 59.771 37.037 17.97 8.57 38.94 2.69
3515 5510 7.584987 CCAAACTAATATGTACTGCATTAGGC 58.415 38.462 17.97 0.00 45.13 3.93
3516 5511 7.445402 CCAAACTAATATGTACTGCATTAGGCT 59.555 37.037 17.97 0.00 45.15 4.58
3517 5512 7.969536 AACTAATATGTACTGCATTAGGCTG 57.030 36.000 17.97 0.00 45.15 4.85
3518 5513 6.467677 ACTAATATGTACTGCATTAGGCTGG 58.532 40.000 17.97 0.00 44.93 4.85
3519 5514 4.982241 ATATGTACTGCATTAGGCTGGT 57.018 40.909 0.00 0.00 44.93 4.00
3520 5515 2.691409 TGTACTGCATTAGGCTGGTC 57.309 50.000 0.00 0.00 44.93 4.02
3521 5516 1.905894 TGTACTGCATTAGGCTGGTCA 59.094 47.619 0.00 0.00 44.93 4.02
3522 5517 2.505407 TGTACTGCATTAGGCTGGTCAT 59.495 45.455 0.00 0.00 44.93 3.06
3523 5518 3.709141 TGTACTGCATTAGGCTGGTCATA 59.291 43.478 0.00 0.00 44.93 2.15
3524 5519 3.482156 ACTGCATTAGGCTGGTCATAG 57.518 47.619 0.00 0.00 44.93 2.23
3525 5520 2.774234 ACTGCATTAGGCTGGTCATAGT 59.226 45.455 0.00 0.00 44.93 2.12
3526 5521 3.136763 CTGCATTAGGCTGGTCATAGTG 58.863 50.000 0.00 0.00 45.15 2.74
3527 5522 2.158769 TGCATTAGGCTGGTCATAGTGG 60.159 50.000 0.00 0.00 45.15 4.00
3528 5523 2.811873 GCATTAGGCTGGTCATAGTGGG 60.812 54.545 0.00 0.00 40.25 4.61
3529 5524 2.561209 TTAGGCTGGTCATAGTGGGA 57.439 50.000 0.00 0.00 0.00 4.37
3530 5525 2.088104 TAGGCTGGTCATAGTGGGAG 57.912 55.000 0.00 0.00 0.00 4.30
3531 5526 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
3532 5527 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
3533 5528 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3534 5529 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3535 5530 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
3536 5531 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
3537 5532 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
3538 5533 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
3539 5534 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
3540 5535 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
3541 5536 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
3542 5537 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
3543 5538 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
3544 5539 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
3545 5540 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
3546 5541 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
3547 5542 6.739664 AGTGGGAGTAACATAGGTAGTAACT 58.260 40.000 0.00 0.00 0.00 2.24
3548 5543 7.187676 AGTGGGAGTAACATAGGTAGTAACTT 58.812 38.462 0.00 0.00 0.00 2.66
3549 5544 8.339247 AGTGGGAGTAACATAGGTAGTAACTTA 58.661 37.037 0.00 0.00 0.00 2.24
3550 5545 8.628280 GTGGGAGTAACATAGGTAGTAACTTAG 58.372 40.741 0.00 0.00 0.00 2.18
3551 5546 7.781693 TGGGAGTAACATAGGTAGTAACTTAGG 59.218 40.741 0.00 0.00 0.00 2.69
3552 5547 7.782168 GGGAGTAACATAGGTAGTAACTTAGGT 59.218 40.741 0.00 0.00 34.13 3.08
3553 5548 8.628280 GGAGTAACATAGGTAGTAACTTAGGTG 58.372 40.741 0.00 0.00 33.18 4.00
3554 5549 8.005192 AGTAACATAGGTAGTAACTTAGGTGC 57.995 38.462 0.00 0.00 33.18 5.01
3555 5550 5.866159 ACATAGGTAGTAACTTAGGTGCC 57.134 43.478 0.00 0.00 31.85 5.01
3556 5551 5.274822 ACATAGGTAGTAACTTAGGTGCCA 58.725 41.667 0.00 0.00 31.85 4.92
3557 5552 5.128335 ACATAGGTAGTAACTTAGGTGCCAC 59.872 44.000 0.00 0.00 31.85 5.01
3558 5553 3.513517 AGGTAGTAACTTAGGTGCCACA 58.486 45.455 0.00 0.00 0.00 4.17
3559 5554 4.101856 AGGTAGTAACTTAGGTGCCACAT 58.898 43.478 0.00 0.00 0.00 3.21
3560 5555 5.274822 AGGTAGTAACTTAGGTGCCACATA 58.725 41.667 0.00 0.00 0.00 2.29
3561 5556 5.722923 AGGTAGTAACTTAGGTGCCACATAA 59.277 40.000 1.65 1.65 0.00 1.90
3562 5557 6.047231 GGTAGTAACTTAGGTGCCACATAAG 58.953 44.000 23.48 23.48 45.07 1.73
3563 5558 4.514401 AGTAACTTAGGTGCCACATAAGC 58.486 43.478 24.63 11.83 43.85 3.09
3564 5559 3.433306 AACTTAGGTGCCACATAAGCA 57.567 42.857 24.63 0.96 43.85 3.91
3565 5560 3.433306 ACTTAGGTGCCACATAAGCAA 57.567 42.857 24.63 0.00 43.85 3.91
3566 5561 3.761897 ACTTAGGTGCCACATAAGCAAA 58.238 40.909 24.63 0.00 43.85 3.68
3567 5562 4.148838 ACTTAGGTGCCACATAAGCAAAA 58.851 39.130 24.63 0.00 43.85 2.44
3568 5563 4.586841 ACTTAGGTGCCACATAAGCAAAAA 59.413 37.500 24.63 0.00 43.85 1.94
3569 5564 5.245977 ACTTAGGTGCCACATAAGCAAAAAT 59.754 36.000 24.63 5.73 43.85 1.82
3570 5565 3.929094 AGGTGCCACATAAGCAAAAATG 58.071 40.909 0.00 0.00 43.02 2.32
3571 5566 3.577848 AGGTGCCACATAAGCAAAAATGA 59.422 39.130 0.00 0.00 43.02 2.57
3572 5567 4.223477 AGGTGCCACATAAGCAAAAATGAT 59.777 37.500 0.00 0.00 43.02 2.45
3573 5568 4.330620 GGTGCCACATAAGCAAAAATGATG 59.669 41.667 0.00 0.00 43.02 3.07
3574 5569 5.170021 GTGCCACATAAGCAAAAATGATGA 58.830 37.500 0.00 0.00 43.02 2.92
3575 5570 5.290158 GTGCCACATAAGCAAAAATGATGAG 59.710 40.000 0.00 0.00 43.02 2.90
3576 5571 4.807304 GCCACATAAGCAAAAATGATGAGG 59.193 41.667 0.00 0.00 33.08 3.86
3577 5572 5.625197 GCCACATAAGCAAAAATGATGAGGT 60.625 40.000 0.00 0.00 32.67 3.85
3578 5573 5.808540 CCACATAAGCAAAAATGATGAGGTG 59.191 40.000 0.00 0.00 0.00 4.00
3579 5574 5.808540 CACATAAGCAAAAATGATGAGGTGG 59.191 40.000 0.00 0.00 0.00 4.61
3580 5575 3.323751 AAGCAAAAATGATGAGGTGGC 57.676 42.857 0.00 0.00 0.00 5.01
3581 5576 2.250031 AGCAAAAATGATGAGGTGGCA 58.750 42.857 0.00 0.00 0.00 4.92
3582 5577 2.633967 AGCAAAAATGATGAGGTGGCAA 59.366 40.909 0.00 0.00 0.00 4.52
3583 5578 2.997986 GCAAAAATGATGAGGTGGCAAG 59.002 45.455 0.00 0.00 0.00 4.01
3584 5579 3.555586 GCAAAAATGATGAGGTGGCAAGT 60.556 43.478 0.00 0.00 0.00 3.16
3585 5580 4.321899 GCAAAAATGATGAGGTGGCAAGTA 60.322 41.667 0.00 0.00 0.00 2.24
3586 5581 5.404946 CAAAAATGATGAGGTGGCAAGTAG 58.595 41.667 0.00 0.00 0.00 2.57
3587 5582 4.307032 AAATGATGAGGTGGCAAGTAGT 57.693 40.909 0.00 0.00 0.00 2.73
3588 5583 4.307032 AATGATGAGGTGGCAAGTAGTT 57.693 40.909 0.00 0.00 0.00 2.24
3589 5584 5.435686 AATGATGAGGTGGCAAGTAGTTA 57.564 39.130 0.00 0.00 0.00 2.24
3590 5585 4.901197 TGATGAGGTGGCAAGTAGTTAA 57.099 40.909 0.00 0.00 0.00 2.01
3591 5586 5.435686 TGATGAGGTGGCAAGTAGTTAAT 57.564 39.130 0.00 0.00 0.00 1.40
3592 5587 5.185454 TGATGAGGTGGCAAGTAGTTAATG 58.815 41.667 0.00 0.00 0.00 1.90
3593 5588 4.901197 TGAGGTGGCAAGTAGTTAATGA 57.099 40.909 0.00 0.00 0.00 2.57
3594 5589 4.832248 TGAGGTGGCAAGTAGTTAATGAG 58.168 43.478 0.00 0.00 0.00 2.90
3595 5590 4.192317 GAGGTGGCAAGTAGTTAATGAGG 58.808 47.826 0.00 0.00 0.00 3.86
3596 5591 3.844211 AGGTGGCAAGTAGTTAATGAGGA 59.156 43.478 0.00 0.00 0.00 3.71
3597 5592 4.080863 AGGTGGCAAGTAGTTAATGAGGAG 60.081 45.833 0.00 0.00 0.00 3.69
3598 5593 4.081087 GGTGGCAAGTAGTTAATGAGGAGA 60.081 45.833 0.00 0.00 0.00 3.71
3599 5594 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
3600 5595 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
3601 5596 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
3602 5597 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
3603 5598 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
3604 5599 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
3605 5600 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
3606 5601 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
3607 5602 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
3608 5603 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
3609 5604 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
3610 5605 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
3611 5606 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
3612 5607 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
3613 5608 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
3614 5609 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
3615 5610 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
3616 5611 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
3617 5612 5.902431 AGGAGAGAGGCAAATAGAGTAACAT 59.098 40.000 0.00 0.00 0.00 2.71
3618 5613 7.069986 AGGAGAGAGGCAAATAGAGTAACATA 58.930 38.462 0.00 0.00 0.00 2.29
3619 5614 7.565398 AGGAGAGAGGCAAATAGAGTAACATAA 59.435 37.037 0.00 0.00 0.00 1.90
3620 5615 8.371699 GGAGAGAGGCAAATAGAGTAACATAAT 58.628 37.037 0.00 0.00 0.00 1.28
3639 5634 8.479313 ACATAATATGTTACCATCACATAGCG 57.521 34.615 0.00 0.00 41.63 4.26
3640 5635 5.862924 AATATGTTACCATCACATAGCGC 57.137 39.130 0.00 0.00 39.83 5.92
3641 5636 2.979814 TGTTACCATCACATAGCGCT 57.020 45.000 17.26 17.26 0.00 5.92
3642 5637 3.260475 TGTTACCATCACATAGCGCTT 57.740 42.857 18.68 0.00 0.00 4.68
3643 5638 3.194861 TGTTACCATCACATAGCGCTTC 58.805 45.455 18.68 0.00 0.00 3.86
3644 5639 2.526304 TACCATCACATAGCGCTTCC 57.474 50.000 18.68 0.00 0.00 3.46
3645 5640 0.179045 ACCATCACATAGCGCTTCCC 60.179 55.000 18.68 0.00 0.00 3.97
3646 5641 0.179048 CCATCACATAGCGCTTCCCA 60.179 55.000 18.68 0.00 0.00 4.37
3647 5642 1.667236 CATCACATAGCGCTTCCCAA 58.333 50.000 18.68 0.00 0.00 4.12
3648 5643 2.224606 CATCACATAGCGCTTCCCAAT 58.775 47.619 18.68 0.00 0.00 3.16
3649 5644 1.667236 TCACATAGCGCTTCCCAATG 58.333 50.000 18.68 15.83 0.00 2.82
3650 5645 0.029834 CACATAGCGCTTCCCAATGC 59.970 55.000 18.68 0.00 0.00 3.56
3651 5646 0.394216 ACATAGCGCTTCCCAATGCA 60.394 50.000 18.68 0.00 0.00 3.96
3652 5647 0.740149 CATAGCGCTTCCCAATGCAA 59.260 50.000 18.68 0.00 0.00 4.08
3653 5648 1.134753 CATAGCGCTTCCCAATGCAAA 59.865 47.619 18.68 0.00 0.00 3.68
3654 5649 1.252175 TAGCGCTTCCCAATGCAAAA 58.748 45.000 18.68 0.00 0.00 2.44
3655 5650 0.609662 AGCGCTTCCCAATGCAAAAT 59.390 45.000 2.64 0.00 0.00 1.82
3656 5651 0.722848 GCGCTTCCCAATGCAAAATG 59.277 50.000 0.00 0.00 0.00 2.32
3657 5652 1.672441 GCGCTTCCCAATGCAAAATGA 60.672 47.619 0.00 0.00 0.00 2.57
3658 5653 2.264813 CGCTTCCCAATGCAAAATGAG 58.735 47.619 0.00 0.00 0.00 2.90
3659 5654 2.353011 CGCTTCCCAATGCAAAATGAGT 60.353 45.455 0.00 0.00 0.00 3.41
3660 5655 3.256558 GCTTCCCAATGCAAAATGAGTC 58.743 45.455 0.00 0.00 0.00 3.36
3661 5656 3.056322 GCTTCCCAATGCAAAATGAGTCT 60.056 43.478 0.00 0.00 0.00 3.24
3662 5657 4.158394 GCTTCCCAATGCAAAATGAGTCTA 59.842 41.667 0.00 0.00 0.00 2.59
3663 5658 5.643379 TTCCCAATGCAAAATGAGTCTAC 57.357 39.130 0.00 0.00 0.00 2.59
3664 5659 4.661222 TCCCAATGCAAAATGAGTCTACA 58.339 39.130 0.00 0.00 0.00 2.74
3665 5660 5.076182 TCCCAATGCAAAATGAGTCTACAA 58.924 37.500 0.00 0.00 0.00 2.41
3666 5661 5.538053 TCCCAATGCAAAATGAGTCTACAAA 59.462 36.000 0.00 0.00 0.00 2.83
3667 5662 5.865552 CCCAATGCAAAATGAGTCTACAAAG 59.134 40.000 0.00 0.00 0.00 2.77
3668 5663 6.449698 CCAATGCAAAATGAGTCTACAAAGT 58.550 36.000 0.00 0.00 0.00 2.66
3669 5664 7.309133 CCCAATGCAAAATGAGTCTACAAAGTA 60.309 37.037 0.00 0.00 0.00 2.24
3670 5665 8.081633 CCAATGCAAAATGAGTCTACAAAGTAA 58.918 33.333 0.00 0.00 0.00 2.24
3671 5666 9.630098 CAATGCAAAATGAGTCTACAAAGTAAT 57.370 29.630 0.00 0.00 0.00 1.89
3696 5691 7.994425 AAATGAAGACATGTATGTTACCACA 57.006 32.000 0.00 0.00 41.95 4.17
3697 5692 8.579850 AAATGAAGACATGTATGTTACCACAT 57.420 30.769 0.00 0.00 41.95 3.21
3698 5693 9.679661 AAATGAAGACATGTATGTTACCACATA 57.320 29.630 0.00 0.00 41.95 2.29
3699 5694 9.851686 AATGAAGACATGTATGTTACCACATAT 57.148 29.630 0.00 0.00 40.43 1.78
3712 5707 8.959676 TGTTACCACATATATGATACTACCCA 57.040 34.615 19.63 3.75 0.00 4.51
3713 5708 8.809066 TGTTACCACATATATGATACTACCCAC 58.191 37.037 19.63 4.89 0.00 4.61
3714 5709 9.032624 GTTACCACATATATGATACTACCCACT 57.967 37.037 19.63 0.00 0.00 4.00
3717 5712 9.201989 ACCACATATATGATACTACCCACTATG 57.798 37.037 19.63 1.97 0.00 2.23
3718 5713 9.421399 CCACATATATGATACTACCCACTATGA 57.579 37.037 19.63 0.00 0.00 2.15
3730 5725 7.598759 CTACCCACTATGAAGGTAGTAACAT 57.401 40.000 7.19 0.00 45.39 2.71
3731 5726 8.701908 CTACCCACTATGAAGGTAGTAACATA 57.298 38.462 7.19 0.00 45.39 2.29
3732 5727 7.598759 ACCCACTATGAAGGTAGTAACATAG 57.401 40.000 0.00 0.00 44.14 2.23
3733 5728 7.359849 ACCCACTATGAAGGTAGTAACATAGA 58.640 38.462 16.37 0.00 42.41 1.98
3734 5729 7.287235 ACCCACTATGAAGGTAGTAACATAGAC 59.713 40.741 16.37 0.00 42.41 2.59
3735 5730 7.506261 CCCACTATGAAGGTAGTAACATAGACT 59.494 40.741 16.37 0.00 42.41 3.24
3736 5731 9.570468 CCACTATGAAGGTAGTAACATAGACTA 57.430 37.037 16.37 0.00 42.41 2.59
3742 5737 9.964354 TGAAGGTAGTAACATAGACTAGTAACA 57.036 33.333 0.00 0.00 30.08 2.41
3770 5765 8.577048 TGCATGTTACTAGTCTAAGTTACTCT 57.423 34.615 0.00 0.00 31.82 3.24
3771 5766 8.675504 TGCATGTTACTAGTCTAAGTTACTCTC 58.324 37.037 0.00 0.00 31.82 3.20
3772 5767 8.130469 GCATGTTACTAGTCTAAGTTACTCTCC 58.870 40.741 0.00 0.00 31.82 3.71
3773 5768 9.175312 CATGTTACTAGTCTAAGTTACTCTCCA 57.825 37.037 0.00 0.00 31.82 3.86
3774 5769 8.558973 TGTTACTAGTCTAAGTTACTCTCCAC 57.441 38.462 0.00 0.00 31.82 4.02
3775 5770 8.381636 TGTTACTAGTCTAAGTTACTCTCCACT 58.618 37.037 0.00 0.00 31.82 4.00
3776 5771 9.883142 GTTACTAGTCTAAGTTACTCTCCACTA 57.117 37.037 0.00 0.00 0.00 2.74
3778 5773 8.967664 ACTAGTCTAAGTTACTCTCCACTATG 57.032 38.462 0.00 0.00 0.00 2.23
3779 5774 8.770322 ACTAGTCTAAGTTACTCTCCACTATGA 58.230 37.037 0.00 0.00 0.00 2.15
3780 5775 9.268268 CTAGTCTAAGTTACTCTCCACTATGAG 57.732 40.741 0.00 0.00 36.47 2.90
3781 5776 6.544564 AGTCTAAGTTACTCTCCACTATGAGC 59.455 42.308 0.00 0.00 33.92 4.26
3782 5777 6.319152 GTCTAAGTTACTCTCCACTATGAGCA 59.681 42.308 0.00 0.00 33.92 4.26
3783 5778 5.590530 AAGTTACTCTCCACTATGAGCAG 57.409 43.478 0.00 0.00 33.92 4.24
3784 5779 3.383185 AGTTACTCTCCACTATGAGCAGC 59.617 47.826 0.00 0.00 33.92 5.25
3785 5780 1.118838 ACTCTCCACTATGAGCAGCC 58.881 55.000 0.00 0.00 33.92 4.85
3786 5781 1.342874 ACTCTCCACTATGAGCAGCCT 60.343 52.381 0.00 0.00 33.92 4.58
3787 5782 1.761784 CTCTCCACTATGAGCAGCCTT 59.238 52.381 0.00 0.00 32.22 4.35
3788 5783 2.961741 CTCTCCACTATGAGCAGCCTTA 59.038 50.000 0.00 0.00 32.22 2.69
3789 5784 2.961741 TCTCCACTATGAGCAGCCTTAG 59.038 50.000 0.00 0.00 32.22 2.18
3828 5823 7.187824 TGTAAGAGGCTATGAATGAGAAAGT 57.812 36.000 0.00 0.00 0.00 2.66
3829 5824 7.044181 TGTAAGAGGCTATGAATGAGAAAGTG 58.956 38.462 0.00 0.00 0.00 3.16
3858 5853 2.409651 GAGCGACAGGTAGCTCGG 59.590 66.667 16.69 0.00 45.53 4.63
3859 5854 3.127352 GAGCGACAGGTAGCTCGGG 62.127 68.421 16.69 0.00 45.53 5.14
3873 5868 2.166664 AGCTCGGGATCTTGTTCACTAC 59.833 50.000 0.00 0.00 0.00 2.73
3874 5869 2.166664 GCTCGGGATCTTGTTCACTACT 59.833 50.000 0.00 0.00 0.00 2.57
3875 5870 3.775202 CTCGGGATCTTGTTCACTACTG 58.225 50.000 0.00 0.00 0.00 2.74
3876 5871 3.162666 TCGGGATCTTGTTCACTACTGT 58.837 45.455 0.00 0.00 0.00 3.55
3880 5875 4.021016 GGGATCTTGTTCACTACTGTCTGT 60.021 45.833 0.00 0.00 0.00 3.41
3895 5890 4.408270 ACTGTCTGTGCCTCAATGATCTAT 59.592 41.667 0.00 0.00 0.00 1.98
3897 5892 5.748402 TGTCTGTGCCTCAATGATCTATTT 58.252 37.500 0.00 0.00 0.00 1.40
3898 5893 5.587443 TGTCTGTGCCTCAATGATCTATTTG 59.413 40.000 0.00 0.00 0.00 2.32
3899 5894 4.577693 TCTGTGCCTCAATGATCTATTTGC 59.422 41.667 0.00 0.00 0.00 3.68
3900 5895 3.633525 TGTGCCTCAATGATCTATTTGCC 59.366 43.478 0.00 0.00 0.00 4.52
3902 5897 4.023365 GTGCCTCAATGATCTATTTGCCTC 60.023 45.833 0.00 0.00 0.00 4.70
3985 6470 3.724295 AGTTGAAGAATAAAGTCGCGC 57.276 42.857 0.00 0.00 0.00 6.86
4147 6636 7.705214 AGTAATCGTAATCTGTAGACTTGACC 58.295 38.462 0.00 0.00 0.00 4.02
4148 6637 6.777213 AATCGTAATCTGTAGACTTGACCT 57.223 37.500 0.00 0.00 0.00 3.85
4235 6724 6.025749 TGAACATAACTAGGAGGATATGCG 57.974 41.667 0.00 0.00 30.61 4.73
4250 6739 7.214467 AGGATATGCGAAACTTTTTGAAGAA 57.786 32.000 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 5.371115 TGCGGCCTATATTTTCAAATAGC 57.629 39.130 0.00 0.00 34.62 2.97
238 239 4.141205 ACGGAGGGAGTACTTAGCTAATCT 60.141 45.833 6.64 6.20 0.00 2.40
249 250 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
250 251 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
251 252 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
252 253 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
253 254 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
254 255 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
255 256 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
256 257 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
257 258 2.598589 CGACAAGTATTTTCGGACGGA 58.401 47.619 0.00 0.00 0.00 4.69
258 259 1.060122 GCGACAAGTATTTTCGGACGG 59.940 52.381 0.00 0.00 33.28 4.79
259 260 1.722464 TGCGACAAGTATTTTCGGACG 59.278 47.619 0.00 0.00 33.28 4.79
260 261 3.799137 TTGCGACAAGTATTTTCGGAC 57.201 42.857 0.00 0.00 32.49 4.79
261 262 4.815040 TTTTGCGACAAGTATTTTCGGA 57.185 36.364 0.00 0.00 33.28 4.55
262 263 5.164100 CCATTTTTGCGACAAGTATTTTCGG 60.164 40.000 0.00 0.00 33.28 4.30
263 264 5.627367 TCCATTTTTGCGACAAGTATTTTCG 59.373 36.000 0.00 0.00 35.82 3.46
264 265 7.581011 ATCCATTTTTGCGACAAGTATTTTC 57.419 32.000 0.00 0.00 0.00 2.29
265 266 8.085296 TGTATCCATTTTTGCGACAAGTATTTT 58.915 29.630 0.00 0.00 0.00 1.82
266 267 7.598278 TGTATCCATTTTTGCGACAAGTATTT 58.402 30.769 0.00 0.00 0.00 1.40
267 268 7.151999 TGTATCCATTTTTGCGACAAGTATT 57.848 32.000 0.00 0.00 0.00 1.89
268 269 6.751514 TGTATCCATTTTTGCGACAAGTAT 57.248 33.333 0.00 0.00 0.00 2.12
269 270 6.561737 TTGTATCCATTTTTGCGACAAGTA 57.438 33.333 0.00 0.00 0.00 2.24
270 271 5.446143 TTGTATCCATTTTTGCGACAAGT 57.554 34.783 0.00 0.00 0.00 3.16
271 272 6.183360 CCATTTGTATCCATTTTTGCGACAAG 60.183 38.462 0.00 0.00 0.00 3.16
272 273 5.636965 CCATTTGTATCCATTTTTGCGACAA 59.363 36.000 0.00 0.00 0.00 3.18
273 274 5.047731 TCCATTTGTATCCATTTTTGCGACA 60.048 36.000 0.00 0.00 0.00 4.35
274 275 5.406649 TCCATTTGTATCCATTTTTGCGAC 58.593 37.500 0.00 0.00 0.00 5.19
275 276 5.651387 TCCATTTGTATCCATTTTTGCGA 57.349 34.783 0.00 0.00 0.00 5.10
276 277 5.276963 GCATCCATTTGTATCCATTTTTGCG 60.277 40.000 0.00 0.00 0.00 4.85
277 278 5.585445 TGCATCCATTTGTATCCATTTTTGC 59.415 36.000 0.00 0.00 0.00 3.68
278 279 7.713507 AGATGCATCCATTTGTATCCATTTTTG 59.286 33.333 23.06 0.00 38.91 2.44
279 280 7.798071 AGATGCATCCATTTGTATCCATTTTT 58.202 30.769 23.06 0.00 38.91 1.94
280 281 7.369551 AGATGCATCCATTTGTATCCATTTT 57.630 32.000 23.06 0.00 38.91 1.82
281 282 6.989155 AGATGCATCCATTTGTATCCATTT 57.011 33.333 23.06 0.00 38.91 2.32
282 283 8.481492 TTTAGATGCATCCATTTGTATCCATT 57.519 30.769 23.06 1.91 38.91 3.16
283 284 8.362639 GTTTTAGATGCATCCATTTGTATCCAT 58.637 33.333 23.06 2.35 38.91 3.41
284 285 7.560991 AGTTTTAGATGCATCCATTTGTATCCA 59.439 33.333 23.06 0.00 38.91 3.41
285 286 7.945134 AGTTTTAGATGCATCCATTTGTATCC 58.055 34.615 23.06 1.70 38.91 2.59
313 314 8.690884 CGAGGAATGGATGTATCTAGATGTATT 58.309 37.037 15.79 6.57 0.00 1.89
314 315 7.286546 CCGAGGAATGGATGTATCTAGATGTAT 59.713 40.741 15.79 9.11 0.00 2.29
315 316 6.603599 CCGAGGAATGGATGTATCTAGATGTA 59.396 42.308 15.79 4.44 0.00 2.29
316 317 5.420421 CCGAGGAATGGATGTATCTAGATGT 59.580 44.000 15.79 1.25 0.00 3.06
317 318 5.654209 TCCGAGGAATGGATGTATCTAGATG 59.346 44.000 15.79 0.00 0.00 2.90
318 319 5.654650 GTCCGAGGAATGGATGTATCTAGAT 59.345 44.000 10.73 10.73 37.93 1.98
319 320 5.010933 GTCCGAGGAATGGATGTATCTAGA 58.989 45.833 0.00 0.00 37.93 2.43
320 321 4.767409 TGTCCGAGGAATGGATGTATCTAG 59.233 45.833 0.00 0.00 37.93 2.43
321 322 4.736473 TGTCCGAGGAATGGATGTATCTA 58.264 43.478 0.00 0.00 37.93 1.98
322 323 3.576861 TGTCCGAGGAATGGATGTATCT 58.423 45.455 0.00 0.00 37.93 1.98
323 324 4.202264 ACTTGTCCGAGGAATGGATGTATC 60.202 45.833 0.00 0.00 37.93 2.24
324 325 3.711704 ACTTGTCCGAGGAATGGATGTAT 59.288 43.478 0.00 0.00 37.93 2.29
325 326 3.104512 ACTTGTCCGAGGAATGGATGTA 58.895 45.455 0.00 0.00 37.93 2.29
326 327 1.909302 ACTTGTCCGAGGAATGGATGT 59.091 47.619 0.00 0.00 37.93 3.06
327 328 2.698855 ACTTGTCCGAGGAATGGATG 57.301 50.000 0.00 0.00 37.93 3.51
328 329 5.368989 GAAATACTTGTCCGAGGAATGGAT 58.631 41.667 0.00 0.00 37.93 3.41
329 330 4.383770 GGAAATACTTGTCCGAGGAATGGA 60.384 45.833 0.00 0.00 0.00 3.41
330 331 3.877508 GGAAATACTTGTCCGAGGAATGG 59.122 47.826 0.00 0.00 0.00 3.16
339 340 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
340 341 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
341 342 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
342 343 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
343 344 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
344 345 1.047034 CCCCTCCGTCCGGAAATACT 61.047 60.000 5.23 0.00 44.66 2.12
345 346 1.444672 CCCCTCCGTCCGGAAATAC 59.555 63.158 5.23 0.00 44.66 1.89
346 347 1.763256 CCCCCTCCGTCCGGAAATA 60.763 63.158 5.23 0.00 44.66 1.40
347 348 2.534594 TACCCCCTCCGTCCGGAAAT 62.535 60.000 5.23 0.00 44.66 2.17
348 349 2.745255 TTACCCCCTCCGTCCGGAAA 62.745 60.000 5.23 0.00 44.66 3.13
349 350 2.534594 ATTACCCCCTCCGTCCGGAA 62.535 60.000 5.23 0.00 44.66 4.30
350 351 1.654137 TATTACCCCCTCCGTCCGGA 61.654 60.000 0.00 0.00 42.90 5.14
351 352 0.543646 ATATTACCCCCTCCGTCCGG 60.544 60.000 0.00 0.00 0.00 5.14
352 353 1.345063 AATATTACCCCCTCCGTCCG 58.655 55.000 0.00 0.00 0.00 4.79
353 354 4.980339 TTAAATATTACCCCCTCCGTCC 57.020 45.455 0.00 0.00 0.00 4.79
354 355 7.683578 ACTAATTAAATATTACCCCCTCCGTC 58.316 38.462 0.00 0.00 0.00 4.79
355 356 7.637548 ACTAATTAAATATTACCCCCTCCGT 57.362 36.000 0.00 0.00 0.00 4.69
356 357 8.819845 ACTACTAATTAAATATTACCCCCTCCG 58.180 37.037 0.00 0.00 0.00 4.63
549 550 2.107204 TGAGCAAAAGAGAGGCTTTCCT 59.893 45.455 0.73 0.00 45.85 3.36
715 716 8.400184 ACGATGGATGATGATATTGAAACATT 57.600 30.769 0.00 0.00 0.00 2.71
716 717 7.991084 ACGATGGATGATGATATTGAAACAT 57.009 32.000 0.00 0.00 0.00 2.71
717 718 8.773645 GTTACGATGGATGATGATATTGAAACA 58.226 33.333 0.00 0.00 0.00 2.83
718 719 8.993121 AGTTACGATGGATGATGATATTGAAAC 58.007 33.333 0.00 0.00 0.00 2.78
989 1004 3.570125 CGTCTCAGCCATATAGTCTGGAA 59.430 47.826 0.00 0.00 35.70 3.53
990 1005 3.149981 CGTCTCAGCCATATAGTCTGGA 58.850 50.000 0.00 0.00 35.70 3.86
991 1006 2.230025 CCGTCTCAGCCATATAGTCTGG 59.770 54.545 0.00 0.00 36.81 3.86
1113 1128 3.313803 TGACACAGTGAAGCGCATTTTTA 59.686 39.130 11.47 0.00 0.00 1.52
1167 1182 6.160576 AGAACACAACAGCATTTACCATTT 57.839 33.333 0.00 0.00 0.00 2.32
1361 1377 4.667668 CGGAGAAAATGAACTCTCGCTTTG 60.668 45.833 0.00 0.00 39.23 2.77
1410 1426 3.938963 TGACTGACCAGAAAAAGTGTGTC 59.061 43.478 3.76 0.00 0.00 3.67
1440 1456 8.642908 AAAGTTTTGCTTGTCAGGTTTATTAC 57.357 30.769 0.00 0.00 37.52 1.89
1458 1474 7.013942 ACCAAAAAGGATAGAGCGTAAAGTTTT 59.986 33.333 0.00 0.00 41.22 2.43
1551 1567 0.651551 GAGATTCAAGCTCTGCTGCG 59.348 55.000 0.00 0.00 39.62 5.18
1693 1709 5.312895 TGTTAGTCCAAAGCAGCAAAGATA 58.687 37.500 0.00 0.00 0.00 1.98
1802 1825 2.892852 CCACAATCTGAACAATGGTGGT 59.107 45.455 0.00 0.00 41.51 4.16
2202 2225 2.295909 CCAGATTGCCGTTTCCTTTTCA 59.704 45.455 0.00 0.00 0.00 2.69
2452 2475 1.757118 CTAAGATCAGCGAACCCCTGA 59.243 52.381 0.00 0.00 42.91 3.86
2462 2485 5.378332 TCCTCCAGTAGTACTAAGATCAGC 58.622 45.833 3.61 0.00 0.00 4.26
2573 2596 6.851330 CGGTGTACTTCTTTAGCTTTTTCTTG 59.149 38.462 0.00 0.00 0.00 3.02
2574 2597 6.541278 ACGGTGTACTTCTTTAGCTTTTTCTT 59.459 34.615 0.00 0.00 0.00 2.52
2745 2768 8.759641 GCAGTGTAAGTTCAGTATCTATCATTG 58.240 37.037 0.00 0.00 0.00 2.82
2751 2774 8.459635 CAAGTAGCAGTGTAAGTTCAGTATCTA 58.540 37.037 0.00 0.00 0.00 1.98
2799 2822 2.218075 CAGCTTGTCATCATCGACATCG 59.782 50.000 0.00 0.00 45.03 3.84
2955 2978 1.375268 GCTCTCACTGTGAGTGGCC 60.375 63.158 30.74 16.43 45.94 5.36
3048 3071 8.203485 AGGCAGAAGAATTTTTGACATGTTAAA 58.797 29.630 11.43 11.43 0.00 1.52
3059 3082 9.702494 CAATCTTTAAGAGGCAGAAGAATTTTT 57.298 29.630 0.03 0.00 32.47 1.94
3114 3137 5.725362 AGCTGTTGGTTCTATTGTAGTCTC 58.275 41.667 0.00 0.00 0.00 3.36
3275 3300 1.453745 CTGTTGCACCACCACACCT 60.454 57.895 0.00 0.00 0.00 4.00
3467 5462 6.824196 TGGCATTACATAAAATAGACGGTTCA 59.176 34.615 0.00 0.00 0.00 3.18
3514 5509 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
3515 5510 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
3516 5511 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
3517 5512 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
3518 5513 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
3519 5514 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
3520 5515 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
3521 5516 8.509441 AGTTACTACCTATGTTACTCCCACTAT 58.491 37.037 0.00 0.00 0.00 2.12
3522 5517 7.876371 AGTTACTACCTATGTTACTCCCACTA 58.124 38.462 0.00 0.00 0.00 2.74
3523 5518 6.739664 AGTTACTACCTATGTTACTCCCACT 58.260 40.000 0.00 0.00 0.00 4.00
3524 5519 7.415592 AAGTTACTACCTATGTTACTCCCAC 57.584 40.000 0.00 0.00 0.00 4.61
3525 5520 7.781693 CCTAAGTTACTACCTATGTTACTCCCA 59.218 40.741 0.00 0.00 0.00 4.37
3526 5521 7.782168 ACCTAAGTTACTACCTATGTTACTCCC 59.218 40.741 0.00 0.00 0.00 4.30
3527 5522 8.628280 CACCTAAGTTACTACCTATGTTACTCC 58.372 40.741 0.00 0.00 0.00 3.85
3528 5523 8.134261 GCACCTAAGTTACTACCTATGTTACTC 58.866 40.741 0.00 0.00 0.00 2.59
3529 5524 7.069208 GGCACCTAAGTTACTACCTATGTTACT 59.931 40.741 0.00 0.00 0.00 2.24
3530 5525 7.147846 TGGCACCTAAGTTACTACCTATGTTAC 60.148 40.741 0.00 0.00 0.00 2.50
3531 5526 6.896860 TGGCACCTAAGTTACTACCTATGTTA 59.103 38.462 0.00 0.00 0.00 2.41
3532 5527 5.722923 TGGCACCTAAGTTACTACCTATGTT 59.277 40.000 0.00 0.00 0.00 2.71
3533 5528 5.128335 GTGGCACCTAAGTTACTACCTATGT 59.872 44.000 6.29 0.00 0.00 2.29
3534 5529 5.128171 TGTGGCACCTAAGTTACTACCTATG 59.872 44.000 16.26 0.00 0.00 2.23
3535 5530 5.274822 TGTGGCACCTAAGTTACTACCTAT 58.725 41.667 16.26 0.00 0.00 2.57
3536 5531 4.676109 TGTGGCACCTAAGTTACTACCTA 58.324 43.478 16.26 0.00 0.00 3.08
3537 5532 3.513517 TGTGGCACCTAAGTTACTACCT 58.486 45.455 16.26 0.00 0.00 3.08
3538 5533 3.967332 TGTGGCACCTAAGTTACTACC 57.033 47.619 16.26 0.00 0.00 3.18
3539 5534 5.522824 GCTTATGTGGCACCTAAGTTACTAC 59.477 44.000 30.37 16.82 31.61 2.73
3540 5535 5.188163 TGCTTATGTGGCACCTAAGTTACTA 59.812 40.000 30.37 16.63 34.56 1.82
3541 5536 4.019681 TGCTTATGTGGCACCTAAGTTACT 60.020 41.667 30.37 5.63 34.56 2.24
3542 5537 4.258543 TGCTTATGTGGCACCTAAGTTAC 58.741 43.478 30.37 20.22 34.56 2.50
3543 5538 4.561500 TGCTTATGTGGCACCTAAGTTA 57.438 40.909 30.37 21.77 34.56 2.24
3544 5539 3.433306 TGCTTATGTGGCACCTAAGTT 57.567 42.857 30.37 9.14 34.56 2.66
3545 5540 3.433306 TTGCTTATGTGGCACCTAAGT 57.567 42.857 30.37 11.44 39.55 2.24
3546 5541 4.782019 TTTTGCTTATGTGGCACCTAAG 57.218 40.909 27.95 27.95 39.55 2.18
3547 5542 5.244851 TCATTTTTGCTTATGTGGCACCTAA 59.755 36.000 16.26 14.69 39.55 2.69
3548 5543 4.769488 TCATTTTTGCTTATGTGGCACCTA 59.231 37.500 16.26 6.88 39.55 3.08
3549 5544 3.577848 TCATTTTTGCTTATGTGGCACCT 59.422 39.130 16.26 8.06 39.55 4.00
3550 5545 3.924144 TCATTTTTGCTTATGTGGCACC 58.076 40.909 16.26 0.00 39.55 5.01
3551 5546 5.170021 TCATCATTTTTGCTTATGTGGCAC 58.830 37.500 11.55 11.55 39.55 5.01
3552 5547 5.402997 TCATCATTTTTGCTTATGTGGCA 57.597 34.783 0.00 0.00 37.97 4.92
3553 5548 4.807304 CCTCATCATTTTTGCTTATGTGGC 59.193 41.667 0.00 0.00 0.00 5.01
3554 5549 5.808540 CACCTCATCATTTTTGCTTATGTGG 59.191 40.000 0.00 0.00 37.28 4.17
3555 5550 5.808540 CCACCTCATCATTTTTGCTTATGTG 59.191 40.000 0.00 0.00 0.00 3.21
3556 5551 5.625197 GCCACCTCATCATTTTTGCTTATGT 60.625 40.000 0.00 0.00 0.00 2.29
3557 5552 4.807304 GCCACCTCATCATTTTTGCTTATG 59.193 41.667 0.00 0.00 0.00 1.90
3558 5553 4.467082 TGCCACCTCATCATTTTTGCTTAT 59.533 37.500 0.00 0.00 0.00 1.73
3559 5554 3.831333 TGCCACCTCATCATTTTTGCTTA 59.169 39.130 0.00 0.00 0.00 3.09
3560 5555 2.633967 TGCCACCTCATCATTTTTGCTT 59.366 40.909 0.00 0.00 0.00 3.91
3561 5556 2.250031 TGCCACCTCATCATTTTTGCT 58.750 42.857 0.00 0.00 0.00 3.91
3562 5557 2.747396 TGCCACCTCATCATTTTTGC 57.253 45.000 0.00 0.00 0.00 3.68
3563 5558 4.261578 ACTTGCCACCTCATCATTTTTG 57.738 40.909 0.00 0.00 0.00 2.44
3564 5559 5.079643 ACTACTTGCCACCTCATCATTTTT 58.920 37.500 0.00 0.00 0.00 1.94
3565 5560 4.666512 ACTACTTGCCACCTCATCATTTT 58.333 39.130 0.00 0.00 0.00 1.82
3566 5561 4.307032 ACTACTTGCCACCTCATCATTT 57.693 40.909 0.00 0.00 0.00 2.32
3567 5562 4.307032 AACTACTTGCCACCTCATCATT 57.693 40.909 0.00 0.00 0.00 2.57
3568 5563 5.435686 TTAACTACTTGCCACCTCATCAT 57.564 39.130 0.00 0.00 0.00 2.45
3569 5564 4.901197 TTAACTACTTGCCACCTCATCA 57.099 40.909 0.00 0.00 0.00 3.07
3570 5565 5.428253 TCATTAACTACTTGCCACCTCATC 58.572 41.667 0.00 0.00 0.00 2.92
3571 5566 5.431765 CTCATTAACTACTTGCCACCTCAT 58.568 41.667 0.00 0.00 0.00 2.90
3572 5567 4.323485 CCTCATTAACTACTTGCCACCTCA 60.323 45.833 0.00 0.00 0.00 3.86
3573 5568 4.081087 TCCTCATTAACTACTTGCCACCTC 60.081 45.833 0.00 0.00 0.00 3.85
3574 5569 3.844211 TCCTCATTAACTACTTGCCACCT 59.156 43.478 0.00 0.00 0.00 4.00
3575 5570 4.081087 TCTCCTCATTAACTACTTGCCACC 60.081 45.833 0.00 0.00 0.00 4.61
3576 5571 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
3577 5572 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
3578 5573 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
3579 5574 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
3580 5575 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
3581 5576 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
3582 5577 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
3583 5578 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
3584 5579 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
3585 5580 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
3586 5581 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
3587 5582 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
3588 5583 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
3589 5584 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
3590 5585 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
3591 5586 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
3592 5587 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
3593 5588 5.273208 TGTTACTCTATTTGCCTCTCTCCT 58.727 41.667 0.00 0.00 0.00 3.69
3594 5589 5.599999 TGTTACTCTATTTGCCTCTCTCC 57.400 43.478 0.00 0.00 0.00 3.71
3623 5618 2.544267 GGAAGCGCTATGTGATGGTAAC 59.456 50.000 12.05 0.00 0.00 2.50
3624 5619 2.484770 GGGAAGCGCTATGTGATGGTAA 60.485 50.000 12.05 0.00 0.00 2.85
3625 5620 1.070134 GGGAAGCGCTATGTGATGGTA 59.930 52.381 12.05 0.00 0.00 3.25
3626 5621 0.179045 GGGAAGCGCTATGTGATGGT 60.179 55.000 12.05 0.00 0.00 3.55
3627 5622 0.179048 TGGGAAGCGCTATGTGATGG 60.179 55.000 12.05 0.00 0.00 3.51
3628 5623 1.667236 TTGGGAAGCGCTATGTGATG 58.333 50.000 12.05 0.00 0.00 3.07
3629 5624 2.224606 CATTGGGAAGCGCTATGTGAT 58.775 47.619 12.05 0.00 0.00 3.06
3630 5625 1.667236 CATTGGGAAGCGCTATGTGA 58.333 50.000 12.05 0.00 0.00 3.58
3631 5626 0.029834 GCATTGGGAAGCGCTATGTG 59.970 55.000 12.05 5.56 33.74 3.21
3632 5627 0.394216 TGCATTGGGAAGCGCTATGT 60.394 50.000 12.05 0.00 33.74 2.29
3633 5628 0.740149 TTGCATTGGGAAGCGCTATG 59.260 50.000 12.05 11.94 34.15 2.23
3634 5629 1.473258 TTTGCATTGGGAAGCGCTAT 58.527 45.000 12.05 0.00 0.00 2.97
3635 5630 1.252175 TTTTGCATTGGGAAGCGCTA 58.748 45.000 12.05 0.00 0.00 4.26
3636 5631 0.609662 ATTTTGCATTGGGAAGCGCT 59.390 45.000 2.64 2.64 0.00 5.92
3637 5632 0.722848 CATTTTGCATTGGGAAGCGC 59.277 50.000 0.00 0.00 0.00 5.92
3638 5633 2.264813 CTCATTTTGCATTGGGAAGCG 58.735 47.619 0.00 0.00 0.00 4.68
3639 5634 3.056322 AGACTCATTTTGCATTGGGAAGC 60.056 43.478 0.00 0.00 0.00 3.86
3640 5635 4.796038 AGACTCATTTTGCATTGGGAAG 57.204 40.909 0.00 0.00 0.00 3.46
3641 5636 5.076182 TGTAGACTCATTTTGCATTGGGAA 58.924 37.500 0.00 0.00 0.00 3.97
3642 5637 4.661222 TGTAGACTCATTTTGCATTGGGA 58.339 39.130 0.00 0.00 0.00 4.37
3643 5638 5.389859 TTGTAGACTCATTTTGCATTGGG 57.610 39.130 0.00 0.00 0.00 4.12
3644 5639 6.449698 ACTTTGTAGACTCATTTTGCATTGG 58.550 36.000 0.00 0.00 0.00 3.16
3645 5640 9.630098 ATTACTTTGTAGACTCATTTTGCATTG 57.370 29.630 0.00 0.00 0.00 2.82
3688 5683 9.032624 AGTGGGTAGTATCATATATGTGGTAAC 57.967 37.037 12.42 7.05 0.00 2.50
3691 5686 9.201989 CATAGTGGGTAGTATCATATATGTGGT 57.798 37.037 12.42 0.00 0.00 4.16
3692 5687 9.421399 TCATAGTGGGTAGTATCATATATGTGG 57.579 37.037 12.42 0.00 0.00 4.17
3698 5693 9.702253 CTACCTTCATAGTGGGTAGTATCATAT 57.298 37.037 9.46 0.00 44.30 1.78
3707 5702 8.505246 TCTATGTTACTACCTTCATAGTGGGTA 58.495 37.037 0.00 0.00 40.01 3.69
3708 5703 7.287235 GTCTATGTTACTACCTTCATAGTGGGT 59.713 40.741 0.00 0.00 40.01 4.51
3709 5704 7.506261 AGTCTATGTTACTACCTTCATAGTGGG 59.494 40.741 0.00 0.00 40.01 4.61
3710 5705 8.466617 AGTCTATGTTACTACCTTCATAGTGG 57.533 38.462 0.00 0.00 40.01 4.00
3716 5711 9.964354 TGTTACTAGTCTATGTTACTACCTTCA 57.036 33.333 0.00 0.00 0.00 3.02
3744 5739 9.191479 AGAGTAACTTAGACTAGTAACATGCAT 57.809 33.333 0.00 0.00 0.00 3.96
3745 5740 8.577048 AGAGTAACTTAGACTAGTAACATGCA 57.423 34.615 0.00 0.00 0.00 3.96
3746 5741 8.130469 GGAGAGTAACTTAGACTAGTAACATGC 58.870 40.741 0.00 0.00 0.00 4.06
3747 5742 9.175312 TGGAGAGTAACTTAGACTAGTAACATG 57.825 37.037 0.00 0.00 0.00 3.21
3748 5743 9.176460 GTGGAGAGTAACTTAGACTAGTAACAT 57.824 37.037 0.00 0.00 0.00 2.71
3749 5744 8.381636 AGTGGAGAGTAACTTAGACTAGTAACA 58.618 37.037 0.00 0.00 0.00 2.41
3750 5745 8.791327 AGTGGAGAGTAACTTAGACTAGTAAC 57.209 38.462 0.00 0.00 0.00 2.50
3753 5748 8.770322 TCATAGTGGAGAGTAACTTAGACTAGT 58.230 37.037 0.00 0.00 0.00 2.57
3754 5749 9.268268 CTCATAGTGGAGAGTAACTTAGACTAG 57.732 40.741 0.00 0.00 37.05 2.57
3755 5750 7.716123 GCTCATAGTGGAGAGTAACTTAGACTA 59.284 40.741 0.00 0.00 37.05 2.59
3756 5751 6.544564 GCTCATAGTGGAGAGTAACTTAGACT 59.455 42.308 0.00 0.00 37.05 3.24
3757 5752 6.319152 TGCTCATAGTGGAGAGTAACTTAGAC 59.681 42.308 0.00 0.00 37.05 2.59
3758 5753 6.424032 TGCTCATAGTGGAGAGTAACTTAGA 58.576 40.000 0.00 0.00 37.05 2.10
3759 5754 6.701145 TGCTCATAGTGGAGAGTAACTTAG 57.299 41.667 0.00 0.00 37.05 2.18
3760 5755 5.067936 GCTGCTCATAGTGGAGAGTAACTTA 59.932 44.000 0.00 0.00 37.05 2.24
3761 5756 4.142049 GCTGCTCATAGTGGAGAGTAACTT 60.142 45.833 0.00 0.00 37.05 2.66
3762 5757 3.383185 GCTGCTCATAGTGGAGAGTAACT 59.617 47.826 0.00 0.00 37.05 2.24
3763 5758 3.491792 GGCTGCTCATAGTGGAGAGTAAC 60.492 52.174 0.00 0.00 37.05 2.50
3764 5759 2.695666 GGCTGCTCATAGTGGAGAGTAA 59.304 50.000 0.00 0.00 37.05 2.24
3765 5760 2.091610 AGGCTGCTCATAGTGGAGAGTA 60.092 50.000 0.00 0.00 37.05 2.59
3766 5761 1.118838 GGCTGCTCATAGTGGAGAGT 58.881 55.000 0.00 0.00 37.05 3.24
3767 5762 1.412079 AGGCTGCTCATAGTGGAGAG 58.588 55.000 0.00 0.00 37.05 3.20
3768 5763 1.871418 AAGGCTGCTCATAGTGGAGA 58.129 50.000 0.00 0.00 37.05 3.71
3769 5764 2.547642 GCTAAGGCTGCTCATAGTGGAG 60.548 54.545 0.00 0.00 35.32 3.86
3770 5765 1.414181 GCTAAGGCTGCTCATAGTGGA 59.586 52.381 0.00 0.00 35.22 4.02
3771 5766 1.876322 GCTAAGGCTGCTCATAGTGG 58.124 55.000 0.00 0.00 35.22 4.00
3803 5798 7.224362 CACTTTCTCATTCATAGCCTCTTACAG 59.776 40.741 0.00 0.00 0.00 2.74
3828 5823 1.618343 TGTCGCTCAGGACTTGAATCA 59.382 47.619 0.00 0.00 37.81 2.57
3829 5824 2.266554 CTGTCGCTCAGGACTTGAATC 58.733 52.381 0.00 0.00 40.23 2.52
3858 5853 4.926238 CACAGACAGTAGTGAACAAGATCC 59.074 45.833 4.09 0.00 37.97 3.36
3859 5854 4.387256 GCACAGACAGTAGTGAACAAGATC 59.613 45.833 4.09 0.00 37.97 2.75
3873 5868 3.263489 AGATCATTGAGGCACAGACAG 57.737 47.619 0.00 0.00 0.00 3.51
3874 5869 5.363562 AATAGATCATTGAGGCACAGACA 57.636 39.130 0.00 0.00 0.00 3.41
3875 5870 5.505324 GCAAATAGATCATTGAGGCACAGAC 60.505 44.000 9.33 0.00 0.00 3.51
3876 5871 4.577693 GCAAATAGATCATTGAGGCACAGA 59.422 41.667 9.33 0.00 0.00 3.41
3880 5875 4.139786 GAGGCAAATAGATCATTGAGGCA 58.860 43.478 9.33 0.00 33.19 4.75
3895 5890 4.380843 TGTCCCAATAAAGAGAGGCAAA 57.619 40.909 0.00 0.00 0.00 3.68
3897 5892 4.380843 TTTGTCCCAATAAAGAGAGGCA 57.619 40.909 0.00 0.00 0.00 4.75
3898 5893 5.722021 TTTTTGTCCCAATAAAGAGAGGC 57.278 39.130 0.00 0.00 0.00 4.70
3899 5894 7.922811 GCATATTTTTGTCCCAATAAAGAGAGG 59.077 37.037 0.00 0.00 0.00 3.69
3900 5895 8.469200 TGCATATTTTTGTCCCAATAAAGAGAG 58.531 33.333 0.00 0.00 0.00 3.20
3902 5897 9.037737 CATGCATATTTTTGTCCCAATAAAGAG 57.962 33.333 0.00 0.00 0.00 2.85
3980 6465 2.226200 CCATGATAATCATTTGGCGCGA 59.774 45.455 12.10 0.00 34.28 5.87
3981 6466 2.587956 CCATGATAATCATTTGGCGCG 58.412 47.619 0.00 0.00 34.28 6.86
4128 6617 8.928270 AAATAAGGTCAAGTCTACAGATTACG 57.072 34.615 0.00 0.00 0.00 3.18
4195 6684 9.447040 GTTATGTTCAAAACTAAAACTCACTCC 57.553 33.333 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.