Multiple sequence alignment - TraesCS5B01G083700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G083700 chr5B 100.000 4088 0 0 1 4088 105766993 105771080 0.000000e+00 7550.0
1 TraesCS5B01G083700 chr5B 94.074 2548 98 25 796 3306 103569500 103572031 0.000000e+00 3819.0
2 TraesCS5B01G083700 chr5B 100.000 1011 0 0 4349 5359 105771341 105772351 0.000000e+00 1868.0
3 TraesCS5B01G083700 chr5B 96.844 1014 28 4 4349 5359 103573077 103574089 0.000000e+00 1692.0
4 TraesCS5B01G083700 chr5B 82.339 872 127 22 2868 3730 105712250 105713103 0.000000e+00 732.0
5 TraesCS5B01G083700 chr5B 82.131 873 127 24 2868 3730 103472971 103473824 0.000000e+00 721.0
6 TraesCS5B01G083700 chr5B 95.990 399 13 2 3336 3731 103572138 103572536 0.000000e+00 645.0
7 TraesCS5B01G083700 chr5B 97.721 351 7 1 3739 4088 103572667 103573017 2.140000e-168 603.0
8 TraesCS5B01G083700 chr5B 75.413 545 99 26 1505 2029 103471579 103472108 1.160000e-56 231.0
9 TraesCS5B01G083700 chr5B 75.275 546 97 29 1505 2029 105710864 105711392 5.400000e-55 226.0
10 TraesCS5B01G083700 chr5B 89.404 151 6 8 1 150 103486015 103486156 1.190000e-41 182.0
11 TraesCS5B01G083700 chr5B 85.276 163 22 2 2171 2332 103472236 103472397 3.320000e-37 167.0
12 TraesCS5B01G083700 chr5B 85.882 85 6 3 717 796 103567825 103567908 9.560000e-13 86.1
13 TraesCS5B01G083700 chr5D 93.231 3117 126 37 660 3731 97322936 97326012 0.000000e+00 4508.0
14 TraesCS5B01G083700 chr5D 96.433 869 30 1 4491 5359 97327471 97328338 0.000000e+00 1432.0
15 TraesCS5B01G083700 chr5D 81.860 871 133 19 2868 3730 97277225 97278078 0.000000e+00 710.0
16 TraesCS5B01G083700 chr5D 95.726 351 14 1 3739 4088 97326143 97326493 1.010000e-156 564.0
17 TraesCS5B01G083700 chr5D 79.279 555 86 15 1696 2231 41691979 41692523 1.420000e-95 361.0
18 TraesCS5B01G083700 chr5D 95.238 147 7 0 4349 4495 97326956 97327102 3.230000e-57 233.0
19 TraesCS5B01G083700 chr5D 74.453 548 98 31 1505 2029 97275834 97276362 1.180000e-46 198.0
20 TraesCS5B01G083700 chr5D 94.017 117 6 1 35 150 97322816 97322932 5.520000e-40 176.0
21 TraesCS5B01G083700 chr5D 85.276 163 22 2 2171 2332 97276489 97276650 3.320000e-37 167.0
22 TraesCS5B01G083700 chr5D 90.141 71 6 1 596 665 119490100 119490170 2.060000e-14 91.6
23 TraesCS5B01G083700 chr5A 93.690 3043 134 21 722 3745 106751280 106748277 0.000000e+00 4503.0
24 TraesCS5B01G083700 chr5A 95.351 1011 46 1 4349 5359 106747748 106746739 0.000000e+00 1605.0
25 TraesCS5B01G083700 chr5A 82.110 872 130 21 2868 3730 92445279 92446133 0.000000e+00 723.0
26 TraesCS5B01G083700 chr5A 96.581 351 11 1 3739 4088 106748159 106747809 1.000000e-161 580.0
27 TraesCS5B01G083700 chr5A 75.045 553 102 28 1505 2032 92443877 92444418 1.940000e-54 224.0
28 TraesCS5B01G083700 chr5A 85.276 163 22 2 2171 2332 92444545 92444706 3.320000e-37 167.0
29 TraesCS5B01G083700 chr6D 80.795 302 37 12 1417 1700 208805187 208804889 3.250000e-52 217.0
30 TraesCS5B01G083700 chr6D 82.166 157 15 6 523 666 419308920 419308764 7.290000e-24 122.0
31 TraesCS5B01G083700 chr6D 80.488 164 14 9 527 674 93633392 93633231 5.670000e-20 110.0
32 TraesCS5B01G083700 chr1A 79.667 300 44 10 1417 1700 138322496 138322198 3.270000e-47 200.0
33 TraesCS5B01G083700 chr4B 77.676 327 63 7 3388 3708 512162873 512162551 1.970000e-44 191.0
34 TraesCS5B01G083700 chr4A 77.370 327 66 6 3387 3708 48302060 48302383 2.550000e-43 187.0
35 TraesCS5B01G083700 chr4A 80.795 151 17 1 527 665 472670594 472670444 2.040000e-19 108.0
36 TraesCS5B01G083700 chr2B 89.109 101 11 0 285 385 638750843 638750943 5.630000e-25 126.0
37 TraesCS5B01G083700 chr2B 80.272 147 17 2 529 663 796178925 796178779 3.420000e-17 100.0
38 TraesCS5B01G083700 chr1B 96.875 64 2 0 600 663 511432330 511432393 2.040000e-19 108.0
39 TraesCS5B01G083700 chr3A 93.846 65 4 0 601 665 35991368 35991304 1.230000e-16 99.0
40 TraesCS5B01G083700 chr2A 89.744 78 7 1 596 673 138192557 138192481 1.230000e-16 99.0
41 TraesCS5B01G083700 chr7D 78.710 155 21 2 523 665 182608289 182608443 5.710000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G083700 chr5B 105766993 105772351 5358 False 4709.000000 7550 100.000000 1 5359 2 chr5B.!!$F5 5358
1 TraesCS5B01G083700 chr5B 103567825 103574089 6264 False 1369.020000 3819 94.102200 717 5359 5 chr5B.!!$F3 4642
2 TraesCS5B01G083700 chr5B 105710864 105713103 2239 False 479.000000 732 78.807000 1505 3730 2 chr5B.!!$F4 2225
3 TraesCS5B01G083700 chr5B 103471579 103473824 2245 False 373.000000 721 80.940000 1505 3730 3 chr5B.!!$F2 2225
4 TraesCS5B01G083700 chr5D 97322816 97328338 5522 False 1382.600000 4508 94.929000 35 5359 5 chr5D.!!$F4 5324
5 TraesCS5B01G083700 chr5D 41691979 41692523 544 False 361.000000 361 79.279000 1696 2231 1 chr5D.!!$F1 535
6 TraesCS5B01G083700 chr5D 97275834 97278078 2244 False 358.333333 710 80.529667 1505 3730 3 chr5D.!!$F3 2225
7 TraesCS5B01G083700 chr5A 106746739 106751280 4541 True 2229.333333 4503 95.207333 722 5359 3 chr5A.!!$R1 4637
8 TraesCS5B01G083700 chr5A 92443877 92446133 2256 False 371.333333 723 80.810333 1505 3730 3 chr5A.!!$F1 2225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
389 391 0.038618 GCCAAAATTTCGAAGCCGGT 60.039 50.0 1.90 0.0 36.24 5.28 F
1344 2978 0.101040 TGCAGCACAAACTCAACAGC 59.899 50.0 0.00 0.0 0.00 4.40 F
1860 3539 0.107897 TGTGTGAACAGCAACTCCGT 60.108 50.0 0.00 0.0 0.00 4.69 F
3405 5272 0.247974 CCTTCTGTAGGTACGCGACG 60.248 60.0 15.93 0.0 39.39 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2278 3993 1.306997 TCCCGGCTGGAGAAAGGAT 60.307 57.895 15.09 0.00 38.61 3.24 R
2570 4305 2.992847 AGAAGGGGTTAAACAAGGGG 57.007 50.000 0.00 0.00 0.00 4.79 R
3690 5557 0.756903 ACACCTGGTACACTGGACAC 59.243 55.000 0.00 0.00 40.42 3.67 R
4688 7256 0.447801 GGATGTACTGTTTGCGCCAG 59.552 55.000 4.18 7.89 36.01 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.333926 TCACACCGACTGATTTTAGCG 58.666 47.619 0.00 0.00 0.00 4.26
22 23 2.066262 CACACCGACTGATTTTAGCGT 58.934 47.619 0.00 0.00 0.00 5.07
23 24 3.057386 TCACACCGACTGATTTTAGCGTA 60.057 43.478 0.00 0.00 0.00 4.42
24 25 3.303495 CACACCGACTGATTTTAGCGTAG 59.697 47.826 0.00 0.00 0.00 3.51
77 78 2.102588 GCACCTCCTTTCGCTTCCTATA 59.897 50.000 0.00 0.00 0.00 1.31
83 84 6.990939 ACCTCCTTTCGCTTCCTATATTAAAC 59.009 38.462 0.00 0.00 0.00 2.01
93 95 8.936864 CGCTTCCTATATTAAACCAAATCTAGG 58.063 37.037 0.00 0.00 37.18 3.02
126 128 2.224892 TGCTTATGGTTGGTTGCTGGTA 60.225 45.455 0.00 0.00 0.00 3.25
141 143 3.074687 TGCTGGTACCTTTGGTGGATTAA 59.925 43.478 14.36 0.00 36.19 1.40
150 152 4.096984 CCTTTGGTGGATTAAGCATCAGAC 59.903 45.833 0.00 0.00 32.79 3.51
153 155 5.894298 TGGTGGATTAAGCATCAGACTAT 57.106 39.130 0.00 0.00 32.79 2.12
155 157 6.057533 TGGTGGATTAAGCATCAGACTATTG 58.942 40.000 0.00 0.00 32.79 1.90
156 158 5.471456 GGTGGATTAAGCATCAGACTATTGG 59.529 44.000 0.00 0.00 32.79 3.16
157 159 6.058183 GTGGATTAAGCATCAGACTATTGGT 58.942 40.000 0.00 0.00 32.79 3.67
158 160 7.217200 GTGGATTAAGCATCAGACTATTGGTA 58.783 38.462 0.00 0.00 32.79 3.25
159 161 7.715249 GTGGATTAAGCATCAGACTATTGGTAA 59.285 37.037 0.00 0.00 32.79 2.85
160 162 7.933577 TGGATTAAGCATCAGACTATTGGTAAG 59.066 37.037 0.00 0.00 32.79 2.34
161 163 8.150945 GGATTAAGCATCAGACTATTGGTAAGA 58.849 37.037 0.00 0.00 32.79 2.10
162 164 9.202273 GATTAAGCATCAGACTATTGGTAAGAG 57.798 37.037 0.00 0.00 0.00 2.85
163 165 4.954875 AGCATCAGACTATTGGTAAGAGC 58.045 43.478 0.00 0.00 0.00 4.09
164 166 4.406972 AGCATCAGACTATTGGTAAGAGCA 59.593 41.667 0.00 0.00 0.00 4.26
165 167 5.071519 AGCATCAGACTATTGGTAAGAGCAT 59.928 40.000 0.00 0.00 0.00 3.79
166 168 5.407995 GCATCAGACTATTGGTAAGAGCATC 59.592 44.000 0.00 0.00 0.00 3.91
179 181 2.717639 GAGCATCTTCTAAGGCCCAA 57.282 50.000 0.00 0.00 0.00 4.12
180 182 3.004752 GAGCATCTTCTAAGGCCCAAA 57.995 47.619 0.00 0.00 0.00 3.28
181 183 3.356290 GAGCATCTTCTAAGGCCCAAAA 58.644 45.455 0.00 0.00 0.00 2.44
182 184 3.092301 AGCATCTTCTAAGGCCCAAAAC 58.908 45.455 0.00 0.00 0.00 2.43
183 185 2.166459 GCATCTTCTAAGGCCCAAAACC 59.834 50.000 0.00 0.00 0.00 3.27
184 186 2.597578 TCTTCTAAGGCCCAAAACCC 57.402 50.000 0.00 0.00 0.00 4.11
185 187 1.076513 TCTTCTAAGGCCCAAAACCCC 59.923 52.381 0.00 0.00 0.00 4.95
186 188 1.077169 CTTCTAAGGCCCAAAACCCCT 59.923 52.381 0.00 0.00 0.00 4.79
187 189 0.702316 TCTAAGGCCCAAAACCCCTC 59.298 55.000 0.00 0.00 0.00 4.30
188 190 0.704664 CTAAGGCCCAAAACCCCTCT 59.295 55.000 0.00 0.00 0.00 3.69
189 191 0.702316 TAAGGCCCAAAACCCCTCTC 59.298 55.000 0.00 0.00 0.00 3.20
190 192 2.037367 GGCCCAAAACCCCTCTCC 59.963 66.667 0.00 0.00 0.00 3.71
191 193 2.851045 GCCCAAAACCCCTCTCCA 59.149 61.111 0.00 0.00 0.00 3.86
192 194 1.155155 GCCCAAAACCCCTCTCCAA 59.845 57.895 0.00 0.00 0.00 3.53
193 195 1.185618 GCCCAAAACCCCTCTCCAAC 61.186 60.000 0.00 0.00 0.00 3.77
194 196 0.482887 CCCAAAACCCCTCTCCAACT 59.517 55.000 0.00 0.00 0.00 3.16
195 197 1.620822 CCAAAACCCCTCTCCAACTG 58.379 55.000 0.00 0.00 0.00 3.16
196 198 1.144913 CCAAAACCCCTCTCCAACTGA 59.855 52.381 0.00 0.00 0.00 3.41
197 199 2.225117 CCAAAACCCCTCTCCAACTGAT 60.225 50.000 0.00 0.00 0.00 2.90
198 200 2.821969 CAAAACCCCTCTCCAACTGATG 59.178 50.000 0.00 0.00 0.00 3.07
199 201 2.044793 AACCCCTCTCCAACTGATGA 57.955 50.000 0.00 0.00 0.00 2.92
200 202 2.277008 ACCCCTCTCCAACTGATGAT 57.723 50.000 0.00 0.00 0.00 2.45
201 203 1.842562 ACCCCTCTCCAACTGATGATG 59.157 52.381 0.00 0.00 0.00 3.07
202 204 1.842562 CCCCTCTCCAACTGATGATGT 59.157 52.381 0.00 0.00 0.00 3.06
203 205 3.041211 CCCCTCTCCAACTGATGATGTA 58.959 50.000 0.00 0.00 0.00 2.29
204 206 3.070734 CCCCTCTCCAACTGATGATGTAG 59.929 52.174 0.00 0.00 0.00 2.74
205 207 3.963374 CCCTCTCCAACTGATGATGTAGA 59.037 47.826 0.00 0.00 0.00 2.59
206 208 4.592351 CCCTCTCCAACTGATGATGTAGAT 59.408 45.833 0.00 0.00 0.00 1.98
207 209 5.511031 CCCTCTCCAACTGATGATGTAGATG 60.511 48.000 0.00 0.00 0.00 2.90
208 210 4.953667 TCTCCAACTGATGATGTAGATGC 58.046 43.478 0.00 0.00 0.00 3.91
209 211 4.406649 TCTCCAACTGATGATGTAGATGCA 59.593 41.667 0.00 0.00 0.00 3.96
210 212 5.101648 TCCAACTGATGATGTAGATGCAA 57.898 39.130 0.00 0.00 0.00 4.08
211 213 5.499313 TCCAACTGATGATGTAGATGCAAA 58.501 37.500 0.00 0.00 0.00 3.68
212 214 5.945191 TCCAACTGATGATGTAGATGCAAAA 59.055 36.000 0.00 0.00 0.00 2.44
213 215 6.433716 TCCAACTGATGATGTAGATGCAAAAA 59.566 34.615 0.00 0.00 0.00 1.94
238 240 4.574674 AATTACATCACTGCCTTCCAGA 57.425 40.909 0.00 0.00 44.64 3.86
239 241 3.616956 TTACATCACTGCCTTCCAGAG 57.383 47.619 0.00 0.00 44.64 3.35
240 242 1.649321 ACATCACTGCCTTCCAGAGA 58.351 50.000 0.00 0.00 44.64 3.10
243 245 1.649321 TCACTGCCTTCCAGAGATGT 58.351 50.000 0.00 0.00 44.64 3.06
244 246 2.820178 TCACTGCCTTCCAGAGATGTA 58.180 47.619 0.00 0.00 44.64 2.29
245 247 3.173151 TCACTGCCTTCCAGAGATGTAA 58.827 45.455 0.00 0.00 44.64 2.41
246 248 3.582647 TCACTGCCTTCCAGAGATGTAAA 59.417 43.478 0.00 0.00 44.64 2.01
247 249 4.041567 TCACTGCCTTCCAGAGATGTAAAA 59.958 41.667 0.00 0.00 44.64 1.52
248 250 4.946157 CACTGCCTTCCAGAGATGTAAAAT 59.054 41.667 0.00 0.00 44.64 1.82
249 251 6.070251 TCACTGCCTTCCAGAGATGTAAAATA 60.070 38.462 0.00 0.00 44.64 1.40
250 252 6.037610 CACTGCCTTCCAGAGATGTAAAATAC 59.962 42.308 0.00 0.00 44.64 1.89
251 253 6.061022 TGCCTTCCAGAGATGTAAAATACA 57.939 37.500 0.00 0.00 43.80 2.29
252 254 6.480763 TGCCTTCCAGAGATGTAAAATACAA 58.519 36.000 0.00 0.00 42.76 2.41
253 255 6.374333 TGCCTTCCAGAGATGTAAAATACAAC 59.626 38.462 0.00 0.00 42.76 3.32
254 256 6.374333 GCCTTCCAGAGATGTAAAATACAACA 59.626 38.462 0.00 0.00 42.76 3.33
255 257 7.626452 GCCTTCCAGAGATGTAAAATACAACAC 60.626 40.741 0.00 0.00 42.76 3.32
256 258 7.148239 CCTTCCAGAGATGTAAAATACAACACC 60.148 40.741 0.00 0.00 42.76 4.16
257 259 6.177610 TCCAGAGATGTAAAATACAACACCC 58.822 40.000 0.00 0.00 42.76 4.61
258 260 5.357032 CCAGAGATGTAAAATACAACACCCC 59.643 44.000 0.00 0.00 42.76 4.95
259 261 5.064707 CAGAGATGTAAAATACAACACCCCG 59.935 44.000 0.00 0.00 42.76 5.73
260 262 3.692593 AGATGTAAAATACAACACCCCGC 59.307 43.478 0.00 0.00 42.76 6.13
261 263 2.860009 TGTAAAATACAACACCCCGCA 58.140 42.857 0.00 0.00 35.38 5.69
262 264 2.814919 TGTAAAATACAACACCCCGCAG 59.185 45.455 0.00 0.00 35.38 5.18
263 265 1.989706 AAAATACAACACCCCGCAGT 58.010 45.000 0.00 0.00 0.00 4.40
264 266 1.243902 AAATACAACACCCCGCAGTG 58.756 50.000 1.88 1.88 43.65 3.66
265 267 1.241315 AATACAACACCCCGCAGTGC 61.241 55.000 4.58 4.58 41.67 4.40
266 268 2.404566 ATACAACACCCCGCAGTGCA 62.405 55.000 16.83 0.00 41.67 4.57
267 269 2.610532 TACAACACCCCGCAGTGCAA 62.611 55.000 16.83 0.00 41.67 4.08
268 270 2.441164 AACACCCCGCAGTGCAAA 60.441 55.556 16.83 0.00 41.67 3.68
269 271 2.055042 AACACCCCGCAGTGCAAAA 61.055 52.632 16.83 0.00 41.67 2.44
270 272 1.398958 AACACCCCGCAGTGCAAAAT 61.399 50.000 16.83 0.00 41.67 1.82
271 273 1.367102 CACCCCGCAGTGCAAAATT 59.633 52.632 16.83 0.00 0.00 1.82
272 274 0.945265 CACCCCGCAGTGCAAAATTG 60.945 55.000 16.83 1.11 0.00 2.32
287 289 5.001237 CAAAATTGCATCTCCATGTAGCA 57.999 39.130 0.00 0.00 31.86 3.49
288 290 4.913335 AAATTGCATCTCCATGTAGCAG 57.087 40.909 0.00 0.00 36.47 4.24
289 291 1.671979 TTGCATCTCCATGTAGCAGC 58.328 50.000 0.00 0.00 36.47 5.25
290 292 0.531311 TGCATCTCCATGTAGCAGCG 60.531 55.000 0.00 0.00 31.86 5.18
291 293 1.226686 GCATCTCCATGTAGCAGCGG 61.227 60.000 0.00 0.00 31.86 5.52
292 294 0.602106 CATCTCCATGTAGCAGCGGG 60.602 60.000 0.00 0.00 0.00 6.13
293 295 2.388890 ATCTCCATGTAGCAGCGGGC 62.389 60.000 0.00 0.00 45.30 6.13
294 296 4.175337 TCCATGTAGCAGCGGGCC 62.175 66.667 0.00 0.00 46.50 5.80
323 325 4.020617 CGGTGGAGGCCTGAAGCA 62.021 66.667 12.00 0.00 46.50 3.91
324 326 2.045536 GGTGGAGGCCTGAAGCAG 60.046 66.667 12.00 0.00 46.50 4.24
325 327 2.749441 GTGGAGGCCTGAAGCAGC 60.749 66.667 12.00 0.00 46.50 5.25
326 328 3.251509 TGGAGGCCTGAAGCAGCA 61.252 61.111 12.00 0.00 46.50 4.41
327 329 2.438075 GGAGGCCTGAAGCAGCAG 60.438 66.667 12.00 0.00 46.50 4.24
328 330 2.667418 GAGGCCTGAAGCAGCAGA 59.333 61.111 12.00 0.00 46.50 4.26
329 331 1.224039 GAGGCCTGAAGCAGCAGAT 59.776 57.895 12.00 0.00 46.50 2.90
330 332 1.077644 AGGCCTGAAGCAGCAGATG 60.078 57.895 3.11 0.00 46.50 2.90
331 333 2.119655 GGCCTGAAGCAGCAGATGG 61.120 63.158 0.00 0.00 46.50 3.51
332 334 2.772691 GCCTGAAGCAGCAGATGGC 61.773 63.158 7.34 0.00 42.97 4.40
358 360 3.497031 GCAACCTAGCGGCGAACC 61.497 66.667 12.98 0.00 0.00 3.62
359 361 2.047655 CAACCTAGCGGCGAACCA 60.048 61.111 12.98 0.00 34.57 3.67
360 362 1.669760 CAACCTAGCGGCGAACCAA 60.670 57.895 12.98 0.00 34.57 3.67
361 363 1.670083 AACCTAGCGGCGAACCAAC 60.670 57.895 12.98 0.00 34.57 3.77
362 364 2.818274 CCTAGCGGCGAACCAACC 60.818 66.667 12.98 0.00 34.57 3.77
363 365 2.264794 CTAGCGGCGAACCAACCT 59.735 61.111 12.98 0.00 34.57 3.50
364 366 1.810030 CTAGCGGCGAACCAACCTC 60.810 63.158 12.98 0.00 34.57 3.85
365 367 3.636313 TAGCGGCGAACCAACCTCG 62.636 63.158 12.98 0.00 39.33 4.63
367 369 3.110178 CGGCGAACCAACCTCGTC 61.110 66.667 0.00 0.00 38.57 4.20
368 370 2.342648 GGCGAACCAACCTCGTCT 59.657 61.111 0.00 0.00 37.90 4.18
369 371 1.737008 GGCGAACCAACCTCGTCTC 60.737 63.158 0.00 0.00 37.90 3.36
370 372 2.087009 GCGAACCAACCTCGTCTCG 61.087 63.158 0.00 0.00 38.57 4.04
371 373 2.087009 CGAACCAACCTCGTCTCGC 61.087 63.158 0.00 0.00 0.00 5.03
372 374 1.737008 GAACCAACCTCGTCTCGCC 60.737 63.158 0.00 0.00 0.00 5.54
373 375 2.430382 GAACCAACCTCGTCTCGCCA 62.430 60.000 0.00 0.00 0.00 5.69
374 376 2.035237 AACCAACCTCGTCTCGCCAA 62.035 55.000 0.00 0.00 0.00 4.52
375 377 1.301401 CCAACCTCGTCTCGCCAAA 60.301 57.895 0.00 0.00 0.00 3.28
376 378 0.882927 CCAACCTCGTCTCGCCAAAA 60.883 55.000 0.00 0.00 0.00 2.44
377 379 1.156736 CAACCTCGTCTCGCCAAAAT 58.843 50.000 0.00 0.00 0.00 1.82
378 380 1.535462 CAACCTCGTCTCGCCAAAATT 59.465 47.619 0.00 0.00 0.00 1.82
379 381 1.892209 ACCTCGTCTCGCCAAAATTT 58.108 45.000 0.00 0.00 0.00 1.82
380 382 1.804748 ACCTCGTCTCGCCAAAATTTC 59.195 47.619 0.00 0.00 0.00 2.17
381 383 1.201921 CCTCGTCTCGCCAAAATTTCG 60.202 52.381 0.00 0.00 0.00 3.46
382 384 1.724623 CTCGTCTCGCCAAAATTTCGA 59.275 47.619 0.00 0.00 0.00 3.71
383 385 2.136728 TCGTCTCGCCAAAATTTCGAA 58.863 42.857 0.00 0.00 0.00 3.71
384 386 2.156891 TCGTCTCGCCAAAATTTCGAAG 59.843 45.455 0.00 0.00 0.00 3.79
385 387 2.242564 GTCTCGCCAAAATTTCGAAGC 58.757 47.619 0.00 0.00 0.00 3.86
386 388 1.199097 TCTCGCCAAAATTTCGAAGCC 59.801 47.619 0.00 0.00 0.00 4.35
387 389 0.109964 TCGCCAAAATTTCGAAGCCG 60.110 50.000 0.00 0.00 37.07 5.52
388 390 1.070471 CGCCAAAATTTCGAAGCCGG 61.070 55.000 0.00 0.00 36.24 6.13
389 391 0.038618 GCCAAAATTTCGAAGCCGGT 60.039 50.000 1.90 0.00 36.24 5.28
390 392 1.977188 CCAAAATTTCGAAGCCGGTC 58.023 50.000 1.90 0.00 36.24 4.79
391 393 1.268352 CCAAAATTTCGAAGCCGGTCA 59.732 47.619 1.90 0.00 36.24 4.02
392 394 2.315901 CAAAATTTCGAAGCCGGTCAC 58.684 47.619 1.90 0.00 36.24 3.67
393 395 0.515564 AAATTTCGAAGCCGGTCACG 59.484 50.000 1.90 6.64 40.55 4.35
394 396 1.908066 AATTTCGAAGCCGGTCACGC 61.908 55.000 1.90 0.00 39.22 5.34
395 397 2.781595 ATTTCGAAGCCGGTCACGCT 62.782 55.000 1.90 0.00 39.22 5.07
396 398 2.981977 TTTCGAAGCCGGTCACGCTT 62.982 55.000 1.90 0.00 38.50 4.68
397 399 3.479269 CGAAGCCGGTCACGCTTC 61.479 66.667 1.90 11.58 43.37 3.86
398 400 2.357034 GAAGCCGGTCACGCTTCA 60.357 61.111 15.68 0.00 44.72 3.02
399 401 2.665185 AAGCCGGTCACGCTTCAC 60.665 61.111 1.90 0.00 39.22 3.18
400 402 3.165160 AAGCCGGTCACGCTTCACT 62.165 57.895 1.90 0.00 39.22 3.41
401 403 3.414700 GCCGGTCACGCTTCACTG 61.415 66.667 1.90 0.00 39.22 3.66
402 404 3.414700 CCGGTCACGCTTCACTGC 61.415 66.667 0.00 0.00 39.22 4.40
403 405 3.414700 CGGTCACGCTTCACTGCC 61.415 66.667 0.00 0.00 0.00 4.85
404 406 3.050275 GGTCACGCTTCACTGCCC 61.050 66.667 0.00 0.00 0.00 5.36
405 407 3.050275 GTCACGCTTCACTGCCCC 61.050 66.667 0.00 0.00 0.00 5.80
406 408 4.680237 TCACGCTTCACTGCCCCG 62.680 66.667 0.00 0.00 0.00 5.73
407 409 4.680237 CACGCTTCACTGCCCCGA 62.680 66.667 0.00 0.00 0.00 5.14
408 410 3.706373 ACGCTTCACTGCCCCGAT 61.706 61.111 0.00 0.00 0.00 4.18
409 411 2.436646 CGCTTCACTGCCCCGATT 60.437 61.111 0.00 0.00 0.00 3.34
410 412 2.040544 CGCTTCACTGCCCCGATTT 61.041 57.895 0.00 0.00 0.00 2.17
411 413 1.508088 GCTTCACTGCCCCGATTTG 59.492 57.895 0.00 0.00 0.00 2.32
412 414 1.244019 GCTTCACTGCCCCGATTTGT 61.244 55.000 0.00 0.00 0.00 2.83
413 415 0.523072 CTTCACTGCCCCGATTTGTG 59.477 55.000 0.00 0.00 0.00 3.33
414 416 1.523154 TTCACTGCCCCGATTTGTGC 61.523 55.000 0.00 0.00 0.00 4.57
415 417 2.676471 ACTGCCCCGATTTGTGCC 60.676 61.111 0.00 0.00 0.00 5.01
416 418 2.361610 CTGCCCCGATTTGTGCCT 60.362 61.111 0.00 0.00 0.00 4.75
417 419 2.361104 TGCCCCGATTTGTGCCTC 60.361 61.111 0.00 0.00 0.00 4.70
418 420 3.140814 GCCCCGATTTGTGCCTCC 61.141 66.667 0.00 0.00 0.00 4.30
419 421 2.824041 CCCCGATTTGTGCCTCCG 60.824 66.667 0.00 0.00 0.00 4.63
420 422 3.508840 CCCGATTTGTGCCTCCGC 61.509 66.667 0.00 0.00 0.00 5.54
421 423 3.508840 CCGATTTGTGCCTCCGCC 61.509 66.667 0.00 0.00 0.00 6.13
422 424 3.864686 CGATTTGTGCCTCCGCCG 61.865 66.667 0.00 0.00 0.00 6.46
423 425 4.179579 GATTTGTGCCTCCGCCGC 62.180 66.667 0.00 0.00 0.00 6.53
443 445 3.875039 CGATTCGCATTGCCGCCA 61.875 61.111 2.41 0.00 0.00 5.69
444 446 2.278142 GATTCGCATTGCCGCCAC 60.278 61.111 2.41 0.00 0.00 5.01
445 447 3.050166 GATTCGCATTGCCGCCACA 62.050 57.895 2.41 0.00 0.00 4.17
446 448 3.340953 ATTCGCATTGCCGCCACAC 62.341 57.895 2.41 0.00 0.00 3.82
449 451 3.988525 GCATTGCCGCCACACCAA 61.989 61.111 0.00 0.00 0.00 3.67
450 452 2.972267 CATTGCCGCCACACCAAT 59.028 55.556 0.00 0.00 0.00 3.16
451 453 1.292860 CATTGCCGCCACACCAATT 59.707 52.632 0.00 0.00 0.00 2.32
452 454 0.737019 CATTGCCGCCACACCAATTC 60.737 55.000 0.00 0.00 0.00 2.17
453 455 2.211619 ATTGCCGCCACACCAATTCG 62.212 55.000 0.00 0.00 0.00 3.34
454 456 4.776647 GCCGCCACACCAATTCGC 62.777 66.667 0.00 0.00 0.00 4.70
455 457 4.114997 CCGCCACACCAATTCGCC 62.115 66.667 0.00 0.00 0.00 5.54
456 458 3.361158 CGCCACACCAATTCGCCA 61.361 61.111 0.00 0.00 0.00 5.69
457 459 2.258286 GCCACACCAATTCGCCAC 59.742 61.111 0.00 0.00 0.00 5.01
458 460 2.961768 CCACACCAATTCGCCACC 59.038 61.111 0.00 0.00 0.00 4.61
459 461 2.635443 CCACACCAATTCGCCACCC 61.635 63.158 0.00 0.00 0.00 4.61
460 462 2.282887 ACACCAATTCGCCACCCC 60.283 61.111 0.00 0.00 0.00 4.95
461 463 3.068064 CACCAATTCGCCACCCCC 61.068 66.667 0.00 0.00 0.00 5.40
462 464 4.733542 ACCAATTCGCCACCCCCG 62.734 66.667 0.00 0.00 0.00 5.73
514 516 4.096003 CCGCCACCGTCCCTGATT 62.096 66.667 0.00 0.00 0.00 2.57
515 517 2.511600 CGCCACCGTCCCTGATTC 60.512 66.667 0.00 0.00 0.00 2.52
516 518 2.511600 GCCACCGTCCCTGATTCG 60.512 66.667 0.00 0.00 0.00 3.34
517 519 2.511600 CCACCGTCCCTGATTCGC 60.512 66.667 0.00 0.00 0.00 4.70
518 520 2.511600 CACCGTCCCTGATTCGCC 60.512 66.667 0.00 0.00 0.00 5.54
519 521 3.782443 ACCGTCCCTGATTCGCCC 61.782 66.667 0.00 0.00 0.00 6.13
520 522 4.891727 CCGTCCCTGATTCGCCCG 62.892 72.222 0.00 0.00 0.00 6.13
525 527 4.473520 CCTGATTCGCCCGCCACT 62.474 66.667 0.00 0.00 0.00 4.00
526 528 2.436646 CTGATTCGCCCGCCACTT 60.437 61.111 0.00 0.00 0.00 3.16
527 529 1.153449 CTGATTCGCCCGCCACTTA 60.153 57.895 0.00 0.00 0.00 2.24
528 530 0.532862 CTGATTCGCCCGCCACTTAT 60.533 55.000 0.00 0.00 0.00 1.73
529 531 0.107410 TGATTCGCCCGCCACTTATT 60.107 50.000 0.00 0.00 0.00 1.40
530 532 0.307760 GATTCGCCCGCCACTTATTG 59.692 55.000 0.00 0.00 0.00 1.90
546 548 6.734137 CACTTATTGGAGTTGCACTTTTACA 58.266 36.000 0.00 0.00 0.00 2.41
547 549 7.370383 CACTTATTGGAGTTGCACTTTTACAT 58.630 34.615 0.00 0.00 0.00 2.29
548 550 7.538678 CACTTATTGGAGTTGCACTTTTACATC 59.461 37.037 0.00 0.00 0.00 3.06
549 551 7.448469 ACTTATTGGAGTTGCACTTTTACATCT 59.552 33.333 0.00 0.00 0.00 2.90
550 552 5.689383 TTGGAGTTGCACTTTTACATCTC 57.311 39.130 0.00 0.00 33.68 2.75
551 553 4.072131 TGGAGTTGCACTTTTACATCTCC 58.928 43.478 11.46 11.46 46.32 3.71
552 554 4.202461 TGGAGTTGCACTTTTACATCTCCT 60.202 41.667 16.79 0.00 46.30 3.69
553 555 4.762251 GGAGTTGCACTTTTACATCTCCTT 59.238 41.667 11.20 0.00 44.27 3.36
554 556 5.241728 GGAGTTGCACTTTTACATCTCCTTT 59.758 40.000 11.20 0.00 44.27 3.11
555 557 6.239036 GGAGTTGCACTTTTACATCTCCTTTT 60.239 38.462 11.20 0.00 44.27 2.27
556 558 7.112452 AGTTGCACTTTTACATCTCCTTTTT 57.888 32.000 0.00 0.00 0.00 1.94
557 559 8.232913 AGTTGCACTTTTACATCTCCTTTTTA 57.767 30.769 0.00 0.00 0.00 1.52
558 560 8.135529 AGTTGCACTTTTACATCTCCTTTTTAC 58.864 33.333 0.00 0.00 0.00 2.01
559 561 7.575414 TGCACTTTTACATCTCCTTTTTACA 57.425 32.000 0.00 0.00 0.00 2.41
560 562 8.177119 TGCACTTTTACATCTCCTTTTTACAT 57.823 30.769 0.00 0.00 0.00 2.29
561 563 8.296713 TGCACTTTTACATCTCCTTTTTACATC 58.703 33.333 0.00 0.00 0.00 3.06
562 564 8.296713 GCACTTTTACATCTCCTTTTTACATCA 58.703 33.333 0.00 0.00 0.00 3.07
570 572 9.347240 ACATCTCCTTTTTACATCATCTATTGG 57.653 33.333 0.00 0.00 0.00 3.16
571 573 9.565090 CATCTCCTTTTTACATCATCTATTGGA 57.435 33.333 0.00 0.00 0.00 3.53
572 574 9.790344 ATCTCCTTTTTACATCATCTATTGGAG 57.210 33.333 0.00 0.00 37.95 3.86
573 575 8.772250 TCTCCTTTTTACATCATCTATTGGAGT 58.228 33.333 0.00 0.00 37.85 3.85
574 576 9.401058 CTCCTTTTTACATCATCTATTGGAGTT 57.599 33.333 0.00 0.00 33.58 3.01
575 577 9.177608 TCCTTTTTACATCATCTATTGGAGTTG 57.822 33.333 0.00 0.00 0.00 3.16
576 578 9.177608 CCTTTTTACATCATCTATTGGAGTTGA 57.822 33.333 0.00 0.00 38.09 3.18
641 643 9.248291 TCTTCTGTTTTACATCTCAAAATTTGC 57.752 29.630 0.00 0.00 0.00 3.68
642 644 8.939201 TTCTGTTTTACATCTCAAAATTTGCA 57.061 26.923 0.00 0.00 0.00 4.08
643 645 9.545105 TTCTGTTTTACATCTCAAAATTTGCAT 57.455 25.926 0.00 0.00 0.00 3.96
644 646 9.545105 TCTGTTTTACATCTCAAAATTTGCATT 57.455 25.926 0.00 0.00 0.00 3.56
678 680 8.748412 GGAGATGCTCTAATGATACTATCACTT 58.252 37.037 0.58 1.29 43.01 3.16
680 682 8.458052 AGATGCTCTAATGATACTATCACTTCG 58.542 37.037 0.58 0.00 43.01 3.79
681 683 7.745620 TGCTCTAATGATACTATCACTTCGA 57.254 36.000 0.58 0.00 43.01 3.71
711 713 5.470098 CCAGCAGTTACAGTAACAGTCAAAT 59.530 40.000 22.81 0.35 41.07 2.32
715 717 4.760204 AGTTACAGTAACAGTCAAATGGCC 59.240 41.667 22.81 0.00 41.07 5.36
748 750 3.066233 GCGACCCCTTCCGACTCTC 62.066 68.421 0.00 0.00 0.00 3.20
895 2507 2.030805 CCCTTTCTTTCTTGGTTCGCTG 60.031 50.000 0.00 0.00 0.00 5.18
937 2571 1.001378 GCCAATTCCCGGAATCATTCG 60.001 52.381 13.24 1.24 30.29 3.34
940 2574 1.865865 ATTCCCGGAATCATTCGTCG 58.134 50.000 0.73 0.00 0.00 5.12
957 2591 4.178540 TCGTCGAGTTCTTGTTTCTGTTT 58.821 39.130 0.00 0.00 0.00 2.83
958 2592 4.266976 TCGTCGAGTTCTTGTTTCTGTTTC 59.733 41.667 0.00 0.00 0.00 2.78
959 2593 4.550255 CGTCGAGTTCTTGTTTCTGTTTCC 60.550 45.833 0.00 0.00 0.00 3.13
960 2594 3.875134 TCGAGTTCTTGTTTCTGTTTCCC 59.125 43.478 0.00 0.00 0.00 3.97
1189 2823 0.466124 GGACAGTGGATGGGTAGAGC 59.534 60.000 0.00 0.00 0.00 4.09
1344 2978 0.101040 TGCAGCACAAACTCAACAGC 59.899 50.000 0.00 0.00 0.00 4.40
1346 2980 1.598924 GCAGCACAAACTCAACAGCTC 60.599 52.381 0.00 0.00 0.00 4.09
1387 3021 6.459161 GCATGAACTCAATGCATTCAGACATA 60.459 38.462 17.98 0.93 40.72 2.29
1388 3022 7.477494 CATGAACTCAATGCATTCAGACATAA 58.523 34.615 17.98 0.00 35.89 1.90
1389 3023 7.080353 TGAACTCAATGCATTCAGACATAAG 57.920 36.000 17.98 0.00 0.00 1.73
1390 3024 6.656270 TGAACTCAATGCATTCAGACATAAGT 59.344 34.615 17.98 4.74 0.00 2.24
1434 3086 7.069826 TCTGTCCCAAGTTCAGAAAAATTTCAT 59.930 33.333 8.47 0.00 39.61 2.57
1435 3087 7.209475 TGTCCCAAGTTCAGAAAAATTTCATC 58.791 34.615 8.47 0.00 39.61 2.92
1582 3241 3.080647 CCTATCAAGGTTGGCCGAC 57.919 57.895 15.51 15.51 38.19 4.79
1605 3265 1.585297 TTTCCCGTTCCGTTCAACTC 58.415 50.000 0.00 0.00 0.00 3.01
1843 3522 7.108841 TGTACTAGTTTCTGAACTTGTCTGT 57.891 36.000 0.00 0.67 44.71 3.41
1844 3523 6.978659 TGTACTAGTTTCTGAACTTGTCTGTG 59.021 38.462 0.00 0.00 44.71 3.66
1851 3530 4.183865 TCTGAACTTGTCTGTGTGAACAG 58.816 43.478 0.00 0.00 39.00 3.16
1860 3539 0.107897 TGTGTGAACAGCAACTCCGT 60.108 50.000 0.00 0.00 0.00 4.69
1964 3649 5.499139 TGTCTCAAACAAGGTGACATTTC 57.501 39.130 0.00 0.00 34.03 2.17
2061 3760 6.042777 GCAACTGAGACTGTATTAGCATGTA 58.957 40.000 0.00 0.00 0.00 2.29
2147 3862 4.758688 TGTGTTACACTCATGCCAGATAG 58.241 43.478 16.79 0.00 35.11 2.08
2148 3863 4.222810 TGTGTTACACTCATGCCAGATAGT 59.777 41.667 16.79 0.00 35.11 2.12
2149 3864 5.420739 TGTGTTACACTCATGCCAGATAGTA 59.579 40.000 16.79 0.00 35.11 1.82
2348 4063 2.185004 ATGCAGTACGCCTCTGTTTT 57.815 45.000 0.00 0.00 41.33 2.43
2376 4092 9.956720 CTGTTTTTCTTTGAGATGAACATAAGT 57.043 29.630 6.93 0.00 32.65 2.24
2444 4160 3.120546 GCTATATTGTACCACATGCAGCG 60.121 47.826 0.00 0.00 0.00 5.18
2565 4300 3.493350 GGCCAGACTCGATGTATGTGATT 60.493 47.826 0.00 0.00 36.24 2.57
2590 4325 2.792967 TCCCCTTGTTTAACCCCTTCTT 59.207 45.455 0.00 0.00 0.00 2.52
2786 4521 5.731678 GGGACATGGGGAAGGTAGATATATT 59.268 44.000 0.00 0.00 0.00 1.28
2791 4526 8.606830 ACATGGGGAAGGTAGATATATTTTCTC 58.393 37.037 0.00 0.00 0.00 2.87
3089 4862 0.599558 CATGGTTGGCAGGTCTGTTG 59.400 55.000 0.00 0.00 0.00 3.33
3129 4903 4.699735 ACTTTCGATATGTTGTTGCCATGA 59.300 37.500 0.00 0.00 0.00 3.07
3297 5072 4.950050 ACCGTGCAAAATTTTGGTAATCA 58.050 34.783 27.60 16.02 38.57 2.57
3405 5272 0.247974 CCTTCTGTAGGTACGCGACG 60.248 60.000 15.93 0.00 39.39 5.12
3441 5308 3.249799 TCAGGTTTTGTATTGCTCACACG 59.750 43.478 0.00 0.00 0.00 4.49
3731 5599 6.909357 GTGTGTCTCTAATTAGCATTTGCATC 59.091 38.462 7.67 0.00 45.16 3.91
3732 5600 6.038603 TGTGTCTCTAATTAGCATTTGCATCC 59.961 38.462 7.67 0.00 45.16 3.51
3733 5601 6.261826 GTGTCTCTAATTAGCATTTGCATCCT 59.738 38.462 7.67 0.00 45.16 3.24
3739 5607 8.786898 TCTAATTAGCATTTGCATCCTATCAAC 58.213 33.333 7.67 0.00 45.16 3.18
3743 5735 4.023450 AGCATTTGCATCCTATCAACATCG 60.023 41.667 5.20 0.00 45.16 3.84
3750 5742 5.861787 TGCATCCTATCAACATCGTATTACG 59.138 40.000 9.95 9.95 44.19 3.18
3772 5764 5.240623 ACGATCTTACAAACCTGATTGCAAA 59.759 36.000 1.71 0.00 33.52 3.68
4384 6578 8.866956 GTTACTGTACATAATTTTGTAGTCGCT 58.133 33.333 8.76 0.00 32.92 4.93
4401 6595 6.084326 AGTCGCTTCAATAAATGGTTTTGT 57.916 33.333 0.00 0.00 0.00 2.83
4441 6635 8.398665 GCACAAGGGTTATACTAAATTCTGAAG 58.601 37.037 0.00 0.00 0.00 3.02
4475 6669 6.620678 TGGAAACAGAAATTCGGAATTCATC 58.379 36.000 15.78 10.91 35.01 2.92
4554 7121 2.744202 CCCACTGTTCTGAGAAAATCCG 59.256 50.000 0.00 0.00 0.00 4.18
4681 7248 6.389906 ACCTGCAATTGCTGTCTATTTTTAC 58.610 36.000 29.37 0.00 42.66 2.01
4692 7260 4.695455 TGTCTATTTTTACAGCTGTCTGGC 59.305 41.667 25.56 8.72 44.54 4.85
4779 7347 2.627699 CCAGCTAGAAACAAAAAGGCCA 59.372 45.455 5.01 0.00 0.00 5.36
4781 7349 4.301628 CAGCTAGAAACAAAAAGGCCAAG 58.698 43.478 5.01 0.00 0.00 3.61
4808 7376 3.554960 GCCAAAACCTAGCAGAAAAAGGG 60.555 47.826 0.00 0.00 34.52 3.95
4886 7454 6.160576 TCCATCGTCAATCAACATCTGATA 57.839 37.500 0.00 0.00 44.43 2.15
4923 7491 1.303888 AGACCTCCGCCGTAGTTCA 60.304 57.895 0.00 0.00 0.00 3.18
4933 7501 3.001330 CCGCCGTAGTTCATTCTTGAATC 59.999 47.826 0.00 0.00 43.49 2.52
4940 7508 5.176741 AGTTCATTCTTGAATCCTCTGCT 57.823 39.130 0.00 0.00 43.49 4.24
5292 7861 2.678336 CCAAACCCTAATCGAGCTTCAC 59.322 50.000 0.00 0.00 0.00 3.18
5346 7915 7.679783 TCAAGGAGTTTAGATCACAGATCAAA 58.320 34.615 9.43 5.51 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.288579 ACGCTAAAATCAGTCGGTGTGA 60.289 45.455 0.00 0.00 0.00 3.58
2 3 2.066262 ACGCTAAAATCAGTCGGTGTG 58.934 47.619 0.00 0.00 0.00 3.82
3 4 2.450609 ACGCTAAAATCAGTCGGTGT 57.549 45.000 0.00 0.00 0.00 4.16
4 5 2.281762 GCTACGCTAAAATCAGTCGGTG 59.718 50.000 0.00 0.00 0.00 4.94
5 6 2.094390 TGCTACGCTAAAATCAGTCGGT 60.094 45.455 0.00 0.00 0.00 4.69
6 7 2.536365 TGCTACGCTAAAATCAGTCGG 58.464 47.619 0.00 0.00 0.00 4.79
7 8 3.366724 TGTTGCTACGCTAAAATCAGTCG 59.633 43.478 0.00 0.00 0.00 4.18
8 9 4.921470 TGTTGCTACGCTAAAATCAGTC 57.079 40.909 0.00 0.00 0.00 3.51
9 10 4.083484 GGTTGTTGCTACGCTAAAATCAGT 60.083 41.667 0.00 0.00 0.00 3.41
10 11 4.403453 GGTTGTTGCTACGCTAAAATCAG 58.597 43.478 0.00 0.00 0.00 2.90
11 12 3.120477 CGGTTGTTGCTACGCTAAAATCA 60.120 43.478 0.00 0.00 0.00 2.57
12 13 3.123959 TCGGTTGTTGCTACGCTAAAATC 59.876 43.478 0.00 0.00 0.00 2.17
13 14 3.068560 TCGGTTGTTGCTACGCTAAAAT 58.931 40.909 0.00 0.00 0.00 1.82
14 15 2.221517 GTCGGTTGTTGCTACGCTAAAA 59.778 45.455 0.00 0.00 0.00 1.52
15 16 1.794116 GTCGGTTGTTGCTACGCTAAA 59.206 47.619 0.00 0.00 0.00 1.85
16 17 1.000060 AGTCGGTTGTTGCTACGCTAA 60.000 47.619 0.00 0.00 0.00 3.09
17 18 0.599558 AGTCGGTTGTTGCTACGCTA 59.400 50.000 0.00 0.00 0.00 4.26
18 19 0.666577 GAGTCGGTTGTTGCTACGCT 60.667 55.000 0.00 0.00 0.00 5.07
19 20 1.779683 GAGTCGGTTGTTGCTACGC 59.220 57.895 0.00 0.00 0.00 4.42
20 21 0.662374 ACGAGTCGGTTGTTGCTACG 60.662 55.000 18.30 0.00 0.00 3.51
21 22 0.782384 CACGAGTCGGTTGTTGCTAC 59.218 55.000 18.30 0.00 0.00 3.58
22 23 0.386476 ACACGAGTCGGTTGTTGCTA 59.614 50.000 18.30 0.00 0.00 3.49
23 24 0.461339 AACACGAGTCGGTTGTTGCT 60.461 50.000 18.30 0.00 0.00 3.91
24 25 0.375803 AAACACGAGTCGGTTGTTGC 59.624 50.000 18.72 0.00 0.00 4.17
25 26 1.661617 TCAAACACGAGTCGGTTGTTG 59.338 47.619 18.72 15.08 0.00 3.33
26 27 2.012937 TCAAACACGAGTCGGTTGTT 57.987 45.000 18.30 15.79 0.00 2.83
27 28 2.234300 ATCAAACACGAGTCGGTTGT 57.766 45.000 18.30 10.26 0.00 3.32
28 29 4.387559 TGATAATCAAACACGAGTCGGTTG 59.612 41.667 18.30 16.70 0.00 3.77
29 30 4.387862 GTGATAATCAAACACGAGTCGGTT 59.612 41.667 18.30 14.59 0.00 4.44
30 31 3.924686 GTGATAATCAAACACGAGTCGGT 59.075 43.478 18.30 9.11 0.00 4.69
31 32 4.500703 GTGATAATCAAACACGAGTCGG 57.499 45.455 18.30 8.43 0.00 4.79
66 67 9.706691 CTAGATTTGGTTTAATATAGGAAGCGA 57.293 33.333 0.00 0.00 29.74 4.93
77 78 6.723977 TGTTTCCTGCCTAGATTTGGTTTAAT 59.276 34.615 0.00 0.00 0.00 1.40
83 84 4.082125 ACTTGTTTCCTGCCTAGATTTGG 58.918 43.478 0.00 0.00 0.00 3.28
93 95 2.558359 ACCATAAGCACTTGTTTCCTGC 59.442 45.455 0.00 0.00 0.00 4.85
126 128 4.019174 CTGATGCTTAATCCACCAAAGGT 58.981 43.478 0.00 0.00 34.00 3.50
141 143 4.406972 TGCTCTTACCAATAGTCTGATGCT 59.593 41.667 0.00 0.00 0.00 3.79
150 152 6.648725 GCCTTAGAAGATGCTCTTACCAATAG 59.351 42.308 0.00 0.00 36.73 1.73
153 155 4.384208 GGCCTTAGAAGATGCTCTTACCAA 60.384 45.833 0.00 0.00 36.73 3.67
155 157 3.495276 GGGCCTTAGAAGATGCTCTTACC 60.495 52.174 0.84 0.00 36.73 2.85
156 158 3.134804 TGGGCCTTAGAAGATGCTCTTAC 59.865 47.826 4.53 0.00 36.73 2.34
157 159 3.384168 TGGGCCTTAGAAGATGCTCTTA 58.616 45.455 4.53 0.00 36.73 2.10
158 160 2.200081 TGGGCCTTAGAAGATGCTCTT 58.800 47.619 4.53 0.00 39.87 2.85
159 161 1.885049 TGGGCCTTAGAAGATGCTCT 58.115 50.000 4.53 0.00 0.00 4.09
160 162 2.717639 TTGGGCCTTAGAAGATGCTC 57.282 50.000 4.53 0.00 0.00 4.26
161 163 3.092301 GTTTTGGGCCTTAGAAGATGCT 58.908 45.455 4.53 0.00 0.00 3.79
162 164 2.166459 GGTTTTGGGCCTTAGAAGATGC 59.834 50.000 4.53 0.00 0.00 3.91
163 165 2.760650 GGGTTTTGGGCCTTAGAAGATG 59.239 50.000 4.53 0.00 0.00 2.90
164 166 2.292257 GGGGTTTTGGGCCTTAGAAGAT 60.292 50.000 4.53 0.00 0.00 2.40
165 167 1.076513 GGGGTTTTGGGCCTTAGAAGA 59.923 52.381 4.53 0.00 0.00 2.87
166 168 1.077169 AGGGGTTTTGGGCCTTAGAAG 59.923 52.381 4.53 0.00 0.00 2.85
167 169 1.076513 GAGGGGTTTTGGGCCTTAGAA 59.923 52.381 4.53 0.00 0.00 2.10
168 170 0.702316 GAGGGGTTTTGGGCCTTAGA 59.298 55.000 4.53 0.00 0.00 2.10
169 171 0.704664 AGAGGGGTTTTGGGCCTTAG 59.295 55.000 4.53 0.00 0.00 2.18
170 172 0.702316 GAGAGGGGTTTTGGGCCTTA 59.298 55.000 4.53 0.00 0.00 2.69
171 173 1.465172 GAGAGGGGTTTTGGGCCTT 59.535 57.895 4.53 0.00 0.00 4.35
172 174 2.548547 GGAGAGGGGTTTTGGGCCT 61.549 63.158 4.53 0.00 0.00 5.19
173 175 2.037367 GGAGAGGGGTTTTGGGCC 59.963 66.667 0.00 0.00 0.00 5.80
174 176 1.155155 TTGGAGAGGGGTTTTGGGC 59.845 57.895 0.00 0.00 0.00 5.36
175 177 0.482887 AGTTGGAGAGGGGTTTTGGG 59.517 55.000 0.00 0.00 0.00 4.12
176 178 1.144913 TCAGTTGGAGAGGGGTTTTGG 59.855 52.381 0.00 0.00 0.00 3.28
177 179 2.656947 TCAGTTGGAGAGGGGTTTTG 57.343 50.000 0.00 0.00 0.00 2.44
178 180 2.716424 TCATCAGTTGGAGAGGGGTTTT 59.284 45.455 0.00 0.00 0.00 2.43
179 181 2.348472 TCATCAGTTGGAGAGGGGTTT 58.652 47.619 0.00 0.00 0.00 3.27
180 182 2.044793 TCATCAGTTGGAGAGGGGTT 57.955 50.000 0.00 0.00 0.00 4.11
181 183 1.842562 CATCATCAGTTGGAGAGGGGT 59.157 52.381 0.00 0.00 0.00 4.95
182 184 1.842562 ACATCATCAGTTGGAGAGGGG 59.157 52.381 0.00 0.00 0.00 4.79
183 185 3.963374 TCTACATCATCAGTTGGAGAGGG 59.037 47.826 0.00 0.00 31.04 4.30
184 186 5.539979 CATCTACATCATCAGTTGGAGAGG 58.460 45.833 0.00 0.00 37.73 3.69
185 187 4.989797 GCATCTACATCATCAGTTGGAGAG 59.010 45.833 0.00 0.00 37.73 3.20
186 188 4.406649 TGCATCTACATCATCAGTTGGAGA 59.593 41.667 0.00 0.00 38.46 3.71
187 189 4.700700 TGCATCTACATCATCAGTTGGAG 58.299 43.478 0.00 0.00 0.00 3.86
188 190 4.758773 TGCATCTACATCATCAGTTGGA 57.241 40.909 0.00 0.00 0.00 3.53
189 191 5.823209 TTTGCATCTACATCATCAGTTGG 57.177 39.130 0.00 0.00 0.00 3.77
214 216 5.774690 TCTGGAAGGCAGTGATGTAATTTTT 59.225 36.000 0.00 0.00 0.00 1.94
215 217 5.324409 TCTGGAAGGCAGTGATGTAATTTT 58.676 37.500 0.00 0.00 0.00 1.82
216 218 4.922206 TCTGGAAGGCAGTGATGTAATTT 58.078 39.130 0.00 0.00 0.00 1.82
217 219 4.225942 TCTCTGGAAGGCAGTGATGTAATT 59.774 41.667 0.00 0.00 0.00 1.40
218 220 3.776969 TCTCTGGAAGGCAGTGATGTAAT 59.223 43.478 0.00 0.00 0.00 1.89
219 221 3.173151 TCTCTGGAAGGCAGTGATGTAA 58.827 45.455 0.00 0.00 0.00 2.41
220 222 2.820178 TCTCTGGAAGGCAGTGATGTA 58.180 47.619 0.00 0.00 0.00 2.29
221 223 1.649321 TCTCTGGAAGGCAGTGATGT 58.351 50.000 0.00 0.00 0.00 3.06
222 224 2.562635 CATCTCTGGAAGGCAGTGATG 58.437 52.381 1.99 1.99 41.27 3.07
223 225 2.194859 ACATCTCTGGAAGGCAGTGAT 58.805 47.619 0.00 0.00 34.44 3.06
224 226 1.649321 ACATCTCTGGAAGGCAGTGA 58.351 50.000 0.00 0.00 0.00 3.41
225 227 3.616956 TTACATCTCTGGAAGGCAGTG 57.383 47.619 0.00 0.00 0.00 3.66
226 228 4.640771 TTTTACATCTCTGGAAGGCAGT 57.359 40.909 0.00 0.00 0.00 4.40
227 229 6.115446 TGTATTTTACATCTCTGGAAGGCAG 58.885 40.000 0.00 0.00 32.89 4.85
228 230 6.061022 TGTATTTTACATCTCTGGAAGGCA 57.939 37.500 0.00 0.00 32.89 4.75
229 231 6.374333 TGTTGTATTTTACATCTCTGGAAGGC 59.626 38.462 0.00 0.00 38.68 4.35
230 232 7.148239 GGTGTTGTATTTTACATCTCTGGAAGG 60.148 40.741 0.00 0.00 38.68 3.46
231 233 7.148239 GGGTGTTGTATTTTACATCTCTGGAAG 60.148 40.741 0.00 0.00 38.68 3.46
232 234 6.657541 GGGTGTTGTATTTTACATCTCTGGAA 59.342 38.462 0.00 0.00 38.68 3.53
233 235 6.177610 GGGTGTTGTATTTTACATCTCTGGA 58.822 40.000 0.00 0.00 38.68 3.86
234 236 5.357032 GGGGTGTTGTATTTTACATCTCTGG 59.643 44.000 0.00 0.00 38.68 3.86
235 237 5.064707 CGGGGTGTTGTATTTTACATCTCTG 59.935 44.000 0.00 0.00 38.68 3.35
236 238 5.183228 CGGGGTGTTGTATTTTACATCTCT 58.817 41.667 0.00 0.00 38.68 3.10
237 239 4.201881 GCGGGGTGTTGTATTTTACATCTC 60.202 45.833 0.00 0.00 38.68 2.75
238 240 3.692593 GCGGGGTGTTGTATTTTACATCT 59.307 43.478 0.00 0.00 38.68 2.90
239 241 3.440872 TGCGGGGTGTTGTATTTTACATC 59.559 43.478 0.00 0.00 38.68 3.06
240 242 3.422796 TGCGGGGTGTTGTATTTTACAT 58.577 40.909 0.00 0.00 38.68 2.29
241 243 2.814919 CTGCGGGGTGTTGTATTTTACA 59.185 45.455 0.00 0.00 36.79 2.41
242 244 2.815503 ACTGCGGGGTGTTGTATTTTAC 59.184 45.455 0.00 0.00 0.00 2.01
243 245 2.814919 CACTGCGGGGTGTTGTATTTTA 59.185 45.455 0.00 0.00 33.04 1.52
244 246 1.611491 CACTGCGGGGTGTTGTATTTT 59.389 47.619 0.00 0.00 33.04 1.82
245 247 1.243902 CACTGCGGGGTGTTGTATTT 58.756 50.000 0.00 0.00 33.04 1.40
246 248 1.241315 GCACTGCGGGGTGTTGTATT 61.241 55.000 0.00 0.00 39.21 1.89
247 249 1.674322 GCACTGCGGGGTGTTGTAT 60.674 57.895 0.00 0.00 39.21 2.29
248 250 2.281208 GCACTGCGGGGTGTTGTA 60.281 61.111 0.00 0.00 39.21 2.41
249 251 4.497984 TGCACTGCGGGGTGTTGT 62.498 61.111 0.00 0.00 39.21 3.32
250 252 2.290122 TTTTGCACTGCGGGGTGTTG 62.290 55.000 0.00 0.00 39.21 3.33
251 253 1.398958 ATTTTGCACTGCGGGGTGTT 61.399 50.000 0.00 0.00 39.21 3.32
252 254 1.398958 AATTTTGCACTGCGGGGTGT 61.399 50.000 0.00 0.00 39.21 4.16
253 255 0.945265 CAATTTTGCACTGCGGGGTG 60.945 55.000 0.00 0.00 39.91 4.61
254 256 1.367102 CAATTTTGCACTGCGGGGT 59.633 52.632 0.00 0.00 0.00 4.95
255 257 4.265282 CAATTTTGCACTGCGGGG 57.735 55.556 0.00 0.00 0.00 5.73
264 266 6.467454 CTGCTACATGGAGATGCAATTTTGC 61.467 44.000 9.87 8.32 44.53 3.68
265 267 5.001237 TGCTACATGGAGATGCAATTTTG 57.999 39.130 9.87 0.00 32.14 2.44
266 268 4.441079 GCTGCTACATGGAGATGCAATTTT 60.441 41.667 9.87 0.00 36.08 1.82
267 269 3.067742 GCTGCTACATGGAGATGCAATTT 59.932 43.478 9.87 0.00 36.08 1.82
268 270 2.621998 GCTGCTACATGGAGATGCAATT 59.378 45.455 9.87 0.00 36.08 2.32
269 271 2.228059 GCTGCTACATGGAGATGCAAT 58.772 47.619 9.87 0.00 36.08 3.56
270 272 1.671979 GCTGCTACATGGAGATGCAA 58.328 50.000 9.87 0.00 36.08 4.08
271 273 0.531311 CGCTGCTACATGGAGATGCA 60.531 55.000 9.87 0.00 36.08 3.96
272 274 1.226686 CCGCTGCTACATGGAGATGC 61.227 60.000 9.87 10.73 36.08 3.91
273 275 0.602106 CCCGCTGCTACATGGAGATG 60.602 60.000 9.87 0.76 36.08 2.90
274 276 1.750930 CCCGCTGCTACATGGAGAT 59.249 57.895 9.87 0.00 36.08 2.75
275 277 3.094062 GCCCGCTGCTACATGGAGA 62.094 63.158 9.87 0.00 36.08 3.71
276 278 2.590007 GCCCGCTGCTACATGGAG 60.590 66.667 0.00 0.00 36.87 3.86
277 279 4.175337 GGCCCGCTGCTACATGGA 62.175 66.667 0.00 0.00 40.92 3.41
306 308 3.965539 CTGCTTCAGGCCTCCACCG 62.966 68.421 0.00 0.00 40.92 4.94
307 309 2.045536 CTGCTTCAGGCCTCCACC 60.046 66.667 0.00 0.00 40.92 4.61
308 310 2.749441 GCTGCTTCAGGCCTCCAC 60.749 66.667 0.00 0.00 40.92 4.02
309 311 3.251509 TGCTGCTTCAGGCCTCCA 61.252 61.111 0.00 0.00 40.92 3.86
310 312 2.268167 ATCTGCTGCTTCAGGCCTCC 62.268 60.000 0.00 0.00 40.92 4.30
311 313 1.096386 CATCTGCTGCTTCAGGCCTC 61.096 60.000 0.00 0.00 40.92 4.70
312 314 1.077644 CATCTGCTGCTTCAGGCCT 60.078 57.895 0.00 0.00 40.92 5.19
313 315 2.119655 CCATCTGCTGCTTCAGGCC 61.120 63.158 0.00 0.00 40.92 5.19
314 316 2.772691 GCCATCTGCTGCTTCAGGC 61.773 63.158 0.00 6.11 42.22 4.85
315 317 2.470362 CGCCATCTGCTGCTTCAGG 61.470 63.158 0.00 0.00 38.05 3.86
316 318 3.099438 CGCCATCTGCTGCTTCAG 58.901 61.111 0.00 0.21 38.05 3.02
317 319 3.129502 GCGCCATCTGCTGCTTCA 61.130 61.111 0.00 0.00 38.05 3.02
318 320 4.233635 CGCGCCATCTGCTGCTTC 62.234 66.667 0.00 0.00 37.35 3.86
341 343 3.497031 GGTTCGCCGCTAGGTTGC 61.497 66.667 0.00 0.00 40.50 4.17
342 344 1.669760 TTGGTTCGCCGCTAGGTTG 60.670 57.895 0.00 0.00 41.18 3.77
343 345 1.670083 GTTGGTTCGCCGCTAGGTT 60.670 57.895 0.00 0.00 41.18 3.50
344 346 2.047560 GTTGGTTCGCCGCTAGGT 60.048 61.111 0.00 0.00 41.18 3.08
345 347 2.818274 GGTTGGTTCGCCGCTAGG 60.818 66.667 0.00 0.00 41.18 3.02
346 348 1.810030 GAGGTTGGTTCGCCGCTAG 60.810 63.158 0.00 0.00 41.18 3.42
347 349 2.263540 GAGGTTGGTTCGCCGCTA 59.736 61.111 0.00 0.00 41.18 4.26
350 352 3.110178 GACGAGGTTGGTTCGCCG 61.110 66.667 0.00 0.00 41.57 6.46
351 353 1.737008 GAGACGAGGTTGGTTCGCC 60.737 63.158 0.00 0.00 41.57 5.54
352 354 2.087009 CGAGACGAGGTTGGTTCGC 61.087 63.158 0.00 0.00 41.57 4.70
353 355 2.087009 GCGAGACGAGGTTGGTTCG 61.087 63.158 0.00 0.00 43.38 3.95
354 356 1.737008 GGCGAGACGAGGTTGGTTC 60.737 63.158 0.00 0.00 0.00 3.62
355 357 2.035237 TTGGCGAGACGAGGTTGGTT 62.035 55.000 0.00 0.00 0.00 3.67
356 358 2.035237 TTTGGCGAGACGAGGTTGGT 62.035 55.000 0.00 0.00 0.00 3.67
357 359 0.882927 TTTTGGCGAGACGAGGTTGG 60.883 55.000 0.00 0.00 0.00 3.77
358 360 1.156736 ATTTTGGCGAGACGAGGTTG 58.843 50.000 0.00 0.00 0.00 3.77
359 361 1.892209 AATTTTGGCGAGACGAGGTT 58.108 45.000 0.00 0.00 0.00 3.50
360 362 1.804748 GAAATTTTGGCGAGACGAGGT 59.195 47.619 0.00 0.00 0.00 3.85
361 363 1.201921 CGAAATTTTGGCGAGACGAGG 60.202 52.381 0.00 0.00 0.00 4.63
362 364 1.724623 TCGAAATTTTGGCGAGACGAG 59.275 47.619 5.58 0.00 0.00 4.18
363 365 1.785768 TCGAAATTTTGGCGAGACGA 58.214 45.000 5.58 0.00 0.00 4.20
364 366 2.495939 CTTCGAAATTTTGGCGAGACG 58.504 47.619 5.58 0.00 35.31 4.18
365 367 2.242564 GCTTCGAAATTTTGGCGAGAC 58.757 47.619 5.58 0.00 35.31 3.36
366 368 1.199097 GGCTTCGAAATTTTGGCGAGA 59.801 47.619 5.58 0.00 35.31 4.04
367 369 1.617740 GGCTTCGAAATTTTGGCGAG 58.382 50.000 5.58 3.48 35.31 5.03
368 370 0.109964 CGGCTTCGAAATTTTGGCGA 60.110 50.000 20.75 9.55 46.95 5.54
369 371 1.070471 CCGGCTTCGAAATTTTGGCG 61.070 55.000 19.12 19.12 44.34 5.69
370 372 0.038618 ACCGGCTTCGAAATTTTGGC 60.039 50.000 0.00 0.00 35.61 4.52
371 373 1.268352 TGACCGGCTTCGAAATTTTGG 59.732 47.619 0.00 0.00 35.61 3.28
372 374 2.315901 GTGACCGGCTTCGAAATTTTG 58.684 47.619 0.00 0.00 35.61 2.44
373 375 1.069500 CGTGACCGGCTTCGAAATTTT 60.069 47.619 0.00 0.00 35.61 1.82
374 376 0.515564 CGTGACCGGCTTCGAAATTT 59.484 50.000 0.00 0.00 35.61 1.82
375 377 1.908066 GCGTGACCGGCTTCGAAATT 61.908 55.000 15.06 0.00 35.61 1.82
376 378 2.388232 GCGTGACCGGCTTCGAAAT 61.388 57.895 15.06 0.00 35.61 2.17
377 379 3.039588 GCGTGACCGGCTTCGAAA 61.040 61.111 15.06 0.00 35.61 3.46
378 380 3.986006 AGCGTGACCGGCTTCGAA 61.986 61.111 15.06 0.00 37.50 3.71
383 385 3.616721 AGTGAAGCGTGACCGGCT 61.617 61.111 0.00 0.00 44.02 5.52
384 386 3.414700 CAGTGAAGCGTGACCGGC 61.415 66.667 0.00 0.00 33.68 6.13
385 387 3.414700 GCAGTGAAGCGTGACCGG 61.415 66.667 0.00 0.00 33.68 5.28
386 388 3.414700 GGCAGTGAAGCGTGACCG 61.415 66.667 0.00 0.00 34.64 4.79
387 389 3.050275 GGGCAGTGAAGCGTGACC 61.050 66.667 0.00 0.00 33.66 4.02
388 390 3.050275 GGGGCAGTGAAGCGTGAC 61.050 66.667 0.00 0.00 34.64 3.67
389 391 4.680237 CGGGGCAGTGAAGCGTGA 62.680 66.667 0.00 0.00 34.64 4.35
390 392 3.958147 ATCGGGGCAGTGAAGCGTG 62.958 63.158 0.00 0.00 34.64 5.34
391 393 2.748058 AAATCGGGGCAGTGAAGCGT 62.748 55.000 0.00 0.00 34.64 5.07
392 394 2.040544 AAATCGGGGCAGTGAAGCG 61.041 57.895 0.00 0.00 34.64 4.68
393 395 1.244019 ACAAATCGGGGCAGTGAAGC 61.244 55.000 0.00 0.00 0.00 3.86
394 396 0.523072 CACAAATCGGGGCAGTGAAG 59.477 55.000 0.00 0.00 32.14 3.02
395 397 1.523154 GCACAAATCGGGGCAGTGAA 61.523 55.000 0.00 0.00 32.14 3.18
396 398 1.971167 GCACAAATCGGGGCAGTGA 60.971 57.895 0.00 0.00 32.14 3.41
397 399 2.568090 GCACAAATCGGGGCAGTG 59.432 61.111 0.00 0.00 0.00 3.66
398 400 2.676471 GGCACAAATCGGGGCAGT 60.676 61.111 0.00 0.00 0.00 4.40
399 401 2.361610 AGGCACAAATCGGGGCAG 60.362 61.111 0.00 0.00 0.00 4.85
400 402 2.361104 GAGGCACAAATCGGGGCA 60.361 61.111 0.00 0.00 0.00 5.36
401 403 3.140814 GGAGGCACAAATCGGGGC 61.141 66.667 0.00 0.00 0.00 5.80
402 404 2.824041 CGGAGGCACAAATCGGGG 60.824 66.667 0.00 0.00 0.00 5.73
403 405 3.508840 GCGGAGGCACAAATCGGG 61.509 66.667 0.00 0.00 39.62 5.14
426 428 3.875039 TGGCGGCAATGCGAATCG 61.875 61.111 10.22 0.00 35.06 3.34
427 429 2.278142 GTGGCGGCAATGCGAATC 60.278 61.111 15.50 0.00 35.06 2.52
428 430 3.061231 TGTGGCGGCAATGCGAAT 61.061 55.556 15.50 0.00 35.06 3.34
429 431 4.036804 GTGTGGCGGCAATGCGAA 62.037 61.111 15.50 0.00 35.06 4.70
432 434 2.784889 AATTGGTGTGGCGGCAATGC 62.785 55.000 15.50 6.69 0.00 3.56
433 435 0.737019 GAATTGGTGTGGCGGCAATG 60.737 55.000 15.50 0.00 0.00 2.82
434 436 1.591183 GAATTGGTGTGGCGGCAAT 59.409 52.632 15.50 0.00 0.00 3.56
435 437 2.913765 CGAATTGGTGTGGCGGCAA 61.914 57.895 15.50 0.00 0.00 4.52
436 438 3.361158 CGAATTGGTGTGGCGGCA 61.361 61.111 7.97 7.97 0.00 5.69
437 439 4.776647 GCGAATTGGTGTGGCGGC 62.777 66.667 0.00 0.00 0.00 6.53
438 440 4.114997 GGCGAATTGGTGTGGCGG 62.115 66.667 0.00 0.00 0.00 6.13
439 441 3.361158 TGGCGAATTGGTGTGGCG 61.361 61.111 0.00 0.00 0.00 5.69
440 442 2.258286 GTGGCGAATTGGTGTGGC 59.742 61.111 0.00 0.00 0.00 5.01
441 443 2.635443 GGGTGGCGAATTGGTGTGG 61.635 63.158 0.00 0.00 0.00 4.17
442 444 2.635443 GGGGTGGCGAATTGGTGTG 61.635 63.158 0.00 0.00 0.00 3.82
443 445 2.282887 GGGGTGGCGAATTGGTGT 60.283 61.111 0.00 0.00 0.00 4.16
444 446 3.068064 GGGGGTGGCGAATTGGTG 61.068 66.667 0.00 0.00 0.00 4.17
445 447 4.733542 CGGGGGTGGCGAATTGGT 62.734 66.667 0.00 0.00 0.00 3.67
497 499 4.096003 AATCAGGGACGGTGGCGG 62.096 66.667 0.00 0.00 0.00 6.13
498 500 2.511600 GAATCAGGGACGGTGGCG 60.512 66.667 0.00 0.00 0.00 5.69
499 501 2.511600 CGAATCAGGGACGGTGGC 60.512 66.667 0.00 0.00 0.00 5.01
500 502 2.511600 GCGAATCAGGGACGGTGG 60.512 66.667 0.00 0.00 0.00 4.61
501 503 2.511600 GGCGAATCAGGGACGGTG 60.512 66.667 0.00 0.00 0.00 4.94
502 504 3.782443 GGGCGAATCAGGGACGGT 61.782 66.667 0.00 0.00 0.00 4.83
503 505 4.891727 CGGGCGAATCAGGGACGG 62.892 72.222 0.00 0.00 0.00 4.79
508 510 2.587322 TAAGTGGCGGGCGAATCAGG 62.587 60.000 0.00 0.00 0.00 3.86
509 511 0.532862 ATAAGTGGCGGGCGAATCAG 60.533 55.000 0.00 0.00 0.00 2.90
510 512 0.107410 AATAAGTGGCGGGCGAATCA 60.107 50.000 0.00 0.00 0.00 2.57
511 513 0.307760 CAATAAGTGGCGGGCGAATC 59.692 55.000 0.00 0.00 0.00 2.52
512 514 1.101049 CCAATAAGTGGCGGGCGAAT 61.101 55.000 0.00 0.00 41.72 3.34
513 515 1.747367 CCAATAAGTGGCGGGCGAA 60.747 57.895 0.00 0.00 41.72 4.70
514 516 2.124901 CCAATAAGTGGCGGGCGA 60.125 61.111 0.00 0.00 41.72 5.54
533 535 7.918562 TGTAAAAAGGAGATGTAAAAGTGCAAC 59.081 33.333 0.00 0.00 0.00 4.17
534 536 8.001881 TGTAAAAAGGAGATGTAAAAGTGCAA 57.998 30.769 0.00 0.00 0.00 4.08
535 537 7.575414 TGTAAAAAGGAGATGTAAAAGTGCA 57.425 32.000 0.00 0.00 0.00 4.57
536 538 8.296713 TGATGTAAAAAGGAGATGTAAAAGTGC 58.703 33.333 0.00 0.00 0.00 4.40
544 546 9.347240 CCAATAGATGATGTAAAAAGGAGATGT 57.653 33.333 0.00 0.00 0.00 3.06
545 547 9.565090 TCCAATAGATGATGTAAAAAGGAGATG 57.435 33.333 0.00 0.00 0.00 2.90
546 548 9.790344 CTCCAATAGATGATGTAAAAAGGAGAT 57.210 33.333 0.00 0.00 40.00 2.75
547 549 8.772250 ACTCCAATAGATGATGTAAAAAGGAGA 58.228 33.333 0.00 0.00 40.00 3.71
548 550 8.970859 ACTCCAATAGATGATGTAAAAAGGAG 57.029 34.615 0.00 0.00 42.51 3.69
549 551 9.177608 CAACTCCAATAGATGATGTAAAAAGGA 57.822 33.333 0.00 0.00 29.65 3.36
550 552 9.177608 TCAACTCCAATAGATGATGTAAAAAGG 57.822 33.333 0.00 0.00 32.49 3.11
553 555 9.342308 GGATCAACTCCAATAGATGATGTAAAA 57.658 33.333 2.92 0.00 45.04 1.52
554 556 8.717717 AGGATCAACTCCAATAGATGATGTAAA 58.282 33.333 2.92 0.00 45.04 2.01
555 557 8.267620 AGGATCAACTCCAATAGATGATGTAA 57.732 34.615 2.92 0.00 45.04 2.41
556 558 7.862274 AGGATCAACTCCAATAGATGATGTA 57.138 36.000 2.92 0.00 45.04 2.29
557 559 6.760440 AGGATCAACTCCAATAGATGATGT 57.240 37.500 2.92 0.00 45.04 3.06
558 560 8.461249 AAAAGGATCAACTCCAATAGATGATG 57.539 34.615 2.92 0.00 45.04 3.07
615 617 9.248291 GCAAATTTTGAGATGTAAAACAGAAGA 57.752 29.630 13.26 0.00 30.64 2.87
616 618 9.033481 TGCAAATTTTGAGATGTAAAACAGAAG 57.967 29.630 13.26 0.00 30.64 2.85
617 619 8.939201 TGCAAATTTTGAGATGTAAAACAGAA 57.061 26.923 13.26 0.00 30.64 3.02
618 620 9.545105 AATGCAAATTTTGAGATGTAAAACAGA 57.455 25.926 13.26 0.00 30.64 3.41
649 651 9.264653 TGATAGTATCATTAGAGCATCTCCAAT 57.735 33.333 8.84 0.00 38.72 3.16
650 652 8.526978 GTGATAGTATCATTAGAGCATCTCCAA 58.473 37.037 15.77 0.00 43.38 3.53
651 653 7.892771 AGTGATAGTATCATTAGAGCATCTCCA 59.107 37.037 15.77 0.00 43.38 3.86
652 654 8.292444 AGTGATAGTATCATTAGAGCATCTCC 57.708 38.462 15.77 0.00 43.38 3.71
653 655 9.787532 GAAGTGATAGTATCATTAGAGCATCTC 57.212 37.037 15.77 0.92 43.38 2.75
654 656 8.458052 CGAAGTGATAGTATCATTAGAGCATCT 58.542 37.037 15.77 2.68 45.41 2.90
655 657 8.454894 TCGAAGTGATAGTATCATTAGAGCATC 58.545 37.037 15.77 4.77 42.04 3.91
656 658 8.341892 TCGAAGTGATAGTATCATTAGAGCAT 57.658 34.615 15.77 0.00 42.04 3.79
657 659 7.745620 TCGAAGTGATAGTATCATTAGAGCA 57.254 36.000 15.77 0.00 42.04 4.26
658 660 9.123709 CTTTCGAAGTGATAGTATCATTAGAGC 57.876 37.037 15.77 2.47 42.04 4.09
659 661 9.619316 CCTTTCGAAGTGATAGTATCATTAGAG 57.381 37.037 15.77 7.20 42.04 2.43
660 662 9.132923 ACCTTTCGAAGTGATAGTATCATTAGA 57.867 33.333 15.77 11.54 42.04 2.10
661 663 9.400638 GACCTTTCGAAGTGATAGTATCATTAG 57.599 37.037 15.77 9.65 42.04 1.73
672 674 1.347707 TGCTGGACCTTTCGAAGTGAT 59.652 47.619 0.00 0.00 0.00 3.06
673 675 0.756294 TGCTGGACCTTTCGAAGTGA 59.244 50.000 0.00 0.00 0.00 3.41
678 680 1.689813 TGTAACTGCTGGACCTTTCGA 59.310 47.619 0.00 0.00 0.00 3.71
680 682 3.127425 ACTGTAACTGCTGGACCTTTC 57.873 47.619 0.00 0.00 0.00 2.62
681 683 4.141574 TGTTACTGTAACTGCTGGACCTTT 60.142 41.667 25.91 0.00 39.38 3.11
748 750 0.607620 AAATGTGGCACCGGAAATGG 59.392 50.000 16.26 0.00 0.00 3.16
895 2507 1.448717 GGCTTCAGGGTCTTCTCGC 60.449 63.158 0.00 0.00 0.00 5.03
920 2532 2.159014 TCGACGAATGATTCCGGGAATT 60.159 45.455 22.53 8.69 31.89 2.17
921 2533 1.411246 TCGACGAATGATTCCGGGAAT 59.589 47.619 21.89 21.89 34.71 3.01
937 2571 4.260661 GGGAAACAGAAACAAGAACTCGAC 60.261 45.833 0.00 0.00 0.00 4.20
940 2574 3.003378 CGGGGAAACAGAAACAAGAACTC 59.997 47.826 0.00 0.00 0.00 3.01
1344 2978 7.280428 AGTTCATGCTGAATATGTCTGAAAGAG 59.720 37.037 2.61 0.00 40.71 2.85
1346 2980 7.065443 TGAGTTCATGCTGAATATGTCTGAAAG 59.935 37.037 2.61 0.00 38.79 2.62
1434 3086 5.164620 TGCCATTTCAAGTACATCTGAGA 57.835 39.130 0.00 0.00 0.00 3.27
1435 3087 5.885230 TTGCCATTTCAAGTACATCTGAG 57.115 39.130 0.00 0.00 0.00 3.35
1605 3265 5.586243 ACATTCGACATAGAACCCAAATCTG 59.414 40.000 0.00 0.00 32.39 2.90
1964 3649 2.282462 AGGCGCCTTTGGGTTCAG 60.282 61.111 27.08 0.00 34.45 3.02
2061 3760 5.913137 TCACATTTGGTTTGAGAAACAGT 57.087 34.783 0.00 0.00 43.15 3.55
2273 3988 1.338136 GGCTGGAGAAAGGATCCGGA 61.338 60.000 6.61 6.61 44.74 5.14
2278 3993 1.306997 TCCCGGCTGGAGAAAGGAT 60.307 57.895 15.09 0.00 38.61 3.24
2337 4052 3.066760 AGAAAAACAGGAAAACAGAGGCG 59.933 43.478 0.00 0.00 0.00 5.52
2348 4063 7.587037 ATGTTCATCTCAAAGAAAAACAGGA 57.413 32.000 10.99 0.00 36.68 3.86
2409 4125 8.882561 TGGTACAATATAGCAGACCCTCATCTG 61.883 44.444 0.00 0.00 42.31 2.90
2418 4134 5.056480 TGCATGTGGTACAATATAGCAGAC 58.944 41.667 0.00 0.00 44.16 3.51
2565 4300 4.010253 AGGGGTTAAACAAGGGGAAAAA 57.990 40.909 0.00 0.00 0.00 1.94
2570 4305 2.992847 AGAAGGGGTTAAACAAGGGG 57.007 50.000 0.00 0.00 0.00 4.79
2571 4306 6.928348 ATTTAAGAAGGGGTTAAACAAGGG 57.072 37.500 0.00 0.00 33.34 3.95
2572 4307 8.528643 CCTAATTTAAGAAGGGGTTAAACAAGG 58.471 37.037 0.00 0.00 33.34 3.61
2574 4309 9.831682 ATCCTAATTTAAGAAGGGGTTAAACAA 57.168 29.630 0.00 0.00 33.34 2.83
2786 4521 7.132805 TCAAACTAGGATAGAGATGGGAGAAA 58.867 38.462 0.00 0.00 42.77 2.52
2791 4526 7.308450 TGAATCAAACTAGGATAGAGATGGG 57.692 40.000 0.00 0.00 42.77 4.00
3337 5112 9.847224 TTTCCTAAGACAAGTAAACTTCAGAAT 57.153 29.630 0.00 0.00 33.11 2.40
3366 5224 9.276590 CAGAAGGATATATGTTGTCAGCAATTA 57.723 33.333 0.00 0.00 36.92 1.40
3405 5272 2.717639 ACCTGAACATGCCATAGTCC 57.282 50.000 0.00 0.00 0.00 3.85
3441 5308 1.409381 CCTGGCCTCCAATCTTCTTCC 60.409 57.143 3.32 0.00 30.80 3.46
3507 5374 1.225426 CCATGGCTGCTTCTGCCTA 59.775 57.895 14.29 3.67 46.43 3.93
3690 5557 0.756903 ACACCTGGTACACTGGACAC 59.243 55.000 0.00 0.00 40.42 3.67
3743 5735 8.062448 GCAATCAGGTTTGTAAGATCGTAATAC 58.938 37.037 0.00 0.00 0.00 1.89
3750 5742 6.583806 CAGTTTGCAATCAGGTTTGTAAGATC 59.416 38.462 10.05 0.00 33.66 2.75
3772 5764 1.610522 GGCTCTGCAACAAATCACAGT 59.389 47.619 0.00 0.00 0.00 3.55
4401 6595 5.983540 ACCCTTGTGCTATTTTTGTTGAAA 58.016 33.333 0.00 0.00 0.00 2.69
4441 6635 6.346838 CGAATTTCTGTTTCCAAAAGAATGCC 60.347 38.462 0.00 0.00 33.44 4.40
4554 7121 1.902508 TCATGACTGGTGTCCTCCTTC 59.097 52.381 0.00 0.00 42.28 3.46
4568 7135 3.084039 TGACCTGGCAGAAATTCATGAC 58.916 45.455 17.94 0.00 0.00 3.06
4681 7248 2.253452 GTTTGCGCCAGACAGCTG 59.747 61.111 13.48 13.48 41.93 4.24
4688 7256 0.447801 GGATGTACTGTTTGCGCCAG 59.552 55.000 4.18 7.89 36.01 4.85
4779 7347 1.969923 TGCTAGGTTTTGGCATTGCTT 59.030 42.857 8.82 0.00 0.00 3.91
4781 7349 1.545582 TCTGCTAGGTTTTGGCATTGC 59.454 47.619 0.00 0.00 35.37 3.56
4808 7376 2.690786 TGAAAATGCCAGCTGAAATGC 58.309 42.857 17.39 10.73 0.00 3.56
4886 7454 2.848694 TCTCATGGGAAAAGAGAGGCAT 59.151 45.455 0.00 0.00 33.75 4.40
4923 7491 7.311171 CCCAGATATAGCAGAGGATTCAAGAAT 60.311 40.741 0.00 0.00 0.00 2.40
4933 7501 6.667414 AGAAGATAACCCAGATATAGCAGAGG 59.333 42.308 0.00 0.00 0.00 3.69
4940 7508 9.760077 GAAAACGAAGAAGATAACCCAGATATA 57.240 33.333 0.00 0.00 0.00 0.86
5292 7861 1.001181 CAGAAACAGGCCCACATTTGG 59.999 52.381 0.00 0.00 43.50 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.