AutoCloner

Multiple sequence alignment - TraesCS5B01G082700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G082700	chr5B	100.000	5308	0	0	1	5308	103470028	103475335	0.000000e+00	9803.0
1	TraesCS5B01G082700	chr5B	96.791	4705	112	12	611	5308	105709920	105714592	0.000000e+00	7816.0
2	TraesCS5B01G082700	chr5B	98.641	515	5	1	114	626	105701716	105702230	0.000000e+00	911.0
3	TraesCS5B01G082700	chr5B	82.090	871	131	20	2944	3797	105769860	105770722	0.000000e+00	721.0
4	TraesCS5B01G082700	chr5B	86.141	368	46	5	3433	3797	103572170	103572535	4.980000e-105	392.0
5	TraesCS5B01G082700	chr5B	76.321	549	99	26	1552	2081	103570220	103570756	1.130000e-66	265.0
6	TraesCS5B01G082700	chr5B	75.503	547	95	30	1552	2081	105768497	105769021	1.150000e-56	231.0
7	TraesCS5B01G082700	chr5B	85.629	167	21	3	2212	2377	103570906	103571070	7.070000e-39	172.0
8	TraesCS5B01G082700	chr5B	85.276	163	22	2	2209	2370	105769163	105769324	3.290000e-37	167.0
9	TraesCS5B01G082700	chr5B	78.082	146	29	2	5165	5308	662606986	662607130	7.320000e-14	89.8
10	TraesCS5B01G082700	chr5B	80.000	130	14	5	5042	5161	243433266	243433393	9.470000e-13	86.1
11	TraesCS5B01G082700	chr5B	82.000	100	10	5	1733	1831	103322539	103322631	1.580000e-10	78.7
12	TraesCS5B01G082700	chr5B	91.071	56	5	0	5042	5097	398070455	398070400	5.700000e-10	76.8
13	TraesCS5B01G082700	chr5A	93.996	5047	225	26	32	5031	92442341	92447356	0.000000e+00	7570.0
14	TraesCS5B01G082700	chr5A	87.931	348	40	2	3451	3797	106748637	106748291	4.950000e-110	409.0
15	TraesCS5B01G082700	chr5A	76.438	539	92	26	1558	2081	106750522	106750004	5.270000e-65	259.0
16	TraesCS5B01G082700	chr5A	79.276	304	28	12	5040	5308	92447406	92447709	4.220000e-41	180.0
17	TraesCS5B01G082700	chr5A	84.756	164	22	3	2215	2377	106749855	106749694	1.530000e-35	161.0
18	TraesCS5B01G082700	chr5A	83.846	130	20	1	5176	5305	60520226	60520354	7.220000e-24	122.0
19	TraesCS5B01G082700	chr5A	81.746	126	16	4	5042	5161	439861002	439860878	1.220000e-16	99.0
20	TraesCS5B01G082700	chr5D	94.891	3543	152	16	1044	4565	97275311	97278845	0.000000e+00	5513.0
21	TraesCS5B01G082700	chr5D	88.235	680	21	27	32	671	97274302	97274962	0.000000e+00	758.0
22	TraesCS5B01G082700	chr5D	81.988	855	122	24	2944	3779	97325152	97325993	0.000000e+00	697.0
23	TraesCS5B01G082700	chr5D	84.836	488	36	21	4554	5038	97279640	97280092	1.740000e-124	457.0
24	TraesCS5B01G082700	chr5D	75.956	549	104	23	1552	2081	97323771	97324310	1.900000e-64	257.0
25	TraesCS5B01G082700	chr5D	85.276	163	22	2	2209	2370	97324454	97324615	3.290000e-37	167.0
26	TraesCS5B01G082700	chr5D	82.222	135	10	8	5039	5161	220708022	220708154	2.610000e-18	104.0
27	TraesCS5B01G082700	chr7A	84.314	153	21	2	5153	5303	514669388	514669237	4.280000e-31	147.0
28	TraesCS5B01G082700	chr3D	81.879	149	24	2	5161	5308	526209763	526209617	7.220000e-24	122.0
29	TraesCS5B01G082700	chr4A	85.185	108	13	3	5173	5280	631217974	631218078	2.020000e-19	108.0
30	TraesCS5B01G082700	chr2D	83.333	120	15	4	5042	5161	335136826	335136940	7.270000e-19	106.0
31	TraesCS5B01G082700	chr3A	81.203	133	21	4	5173	5305	717261620	717261748	2.610000e-18	104.0
32	TraesCS5B01G082700	chr3A	80.000	135	22	3	5174	5303	30353799	30353933	1.570000e-15	95.3
33	TraesCS5B01G082700	chr1D	79.839	124	24	1	5161	5284	80016485	80016607	7.320000e-14	89.8
34	TraesCS5B01G082700	chr6D	83.158	95	13	3	4810	4902	65794569	65794476	3.410000e-12	84.2
35	TraesCS5B01G082700	chr6D	78.740	127	15	4	5043	5158	284503423	284503548	2.050000e-09	75.0
36	TraesCS5B01G082700	chr6B	90.000	60	4	2	4746	4803	584861852	584861911	5.700000e-10	76.8
37	TraesCS5B01G082700	chr2B	92.453	53	4	0	4746	4798	707289345	707289397	5.700000e-10	76.8
38	TraesCS5B01G082700	chr2B	97.436	39	1	0	4764	4802	456586525	456586487	3.430000e-07	67.6
39	TraesCS5B01G082700	chr7B	90.909	55	5	0	4746	4800	397870484	397870538	2.050000e-09	75.0
40	TraesCS5B01G082700	chr7B	92.308	52	2	2	4746	4796	303761622	303761672	7.370000e-09	73.1
41	TraesCS5B01G082700	chr7B	92.157	51	2	2	4746	4795	225716289	225716338	2.650000e-08	71.3
42	TraesCS5B01G082700	chr7B	87.302	63	6	2	4746	4807	408246823	408246762	2.650000e-08	71.3
43	TraesCS5B01G082700	chrUn	95.455	44	2	0	5042	5085	37815016	37815059	2.650000e-08	71.3
44	TraesCS5B01G082700	chr1A	97.059	34	1	0	3105	3138	377013540	377013573	2.060000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G082700	chr5B	103470028	103475335	5307	False	9803.000000	9803	100.000000	1	5308	1	chr5B.!!$F2	5307
1	TraesCS5B01G082700	chr5B	105709920	105714592	4672	False	7816.000000	7816	96.791000	611	5308	1	chr5B.!!$F4	4697
2	TraesCS5B01G082700	chr5B	105701716	105702230	514	False	911.000000	911	98.641000	114	626	1	chr5B.!!$F3	512
3	TraesCS5B01G082700	chr5B	105768497	105770722	2225	False	373.000000	721	80.956333	1552	3797	3	chr5B.!!$F8	2245
4	TraesCS5B01G082700	chr5B	103570220	103572535	2315	False	276.333333	392	82.697000	1552	3797	3	chr5B.!!$F7	2245
5	TraesCS5B01G082700	chr5A	92442341	92447709	5368	False	3875.000000	7570	86.636000	32	5308	2	chr5A.!!$F2	5276
6	TraesCS5B01G082700	chr5A	106748291	106750522	2231	True	276.333333	409	83.041667	1558	3797	3	chr5A.!!$R2	2239
7	TraesCS5B01G082700	chr5D	97274302	97280092	5790	False	2242.666667	5513	89.320667	32	5038	3	chr5D.!!$F2	5006
8	TraesCS5B01G082700	chr5D	97323771	97325993	2222	False	373.666667	697	81.073333	1552	3779	3	chr5D.!!$F3	2227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
871	950	1.347707	TGTGCATTCTTCCTCGGTTCT	59.652	47.619	0.00	0.00	0.00	3.01	F
1514	1612	0.179137	TGCACCTGAGATCTTACGCG	60.179	55.000	3.53	3.53	0.00	6.01	F
2969	3141	0.913451	AGGCAGAGGCAGATGGTTCT	60.913	55.000	0.00	0.00	43.71	3.01	F
3288	3460	2.037772	CGGGACTGGATCTTTCTATGGG	59.962	54.545	0.00	0.00	0.00	4.00	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2507	2672	0.745845	CAGGTGCTCCTACATGTGCC	60.746	60.000	9.11	0.0	43.07	5.01	R
3288	3460	4.543590	TTCTCCACCTGAGTCAAGATTC	57.456	45.455	0.00	0.0	42.12	2.52	R
4139	4416	1.134220	AGCTTGACGAACCCAAAGTCA	60.134	47.619	0.00	0.0	42.36	3.41	R
5092	6230	0.101219	GTGCTCATTTCCAATCCGGC	59.899	55.000	0.00	0.0	33.14	6.13	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	4.489771	CTCCCGCCCACCACCATC	62.490	72.222	0.00	0.00	0.00	3.51
23	24	4.408821	GCCCACCACCATCGCTCA	62.409	66.667	0.00	0.00	0.00	4.26
24	25	2.436646	CCCACCACCATCGCTCAC	60.437	66.667	0.00	0.00	0.00	3.51
25	26	2.436646	CCACCACCATCGCTCACC	60.437	66.667	0.00	0.00	0.00	4.02
26	27	2.665000	CACCACCATCGCTCACCT	59.335	61.111	0.00	0.00	0.00	4.00
27	28	1.448540	CACCACCATCGCTCACCTC	60.449	63.158	0.00	0.00	0.00	3.85
28	29	2.187946	CCACCATCGCTCACCTCC	59.812	66.667	0.00	0.00	0.00	4.30
29	30	2.187946	CACCATCGCTCACCTCCC	59.812	66.667	0.00	0.00	0.00	4.30
30	31	2.284625	ACCATCGCTCACCTCCCA	60.285	61.111	0.00	0.00	0.00	4.37
675	715	6.231211	ACGTCTGTCAAATTAATCTTCACCT	58.769	36.000	0.00	0.00	0.00	4.00
871	950	1.347707	TGTGCATTCTTCCTCGGTTCT	59.652	47.619	0.00	0.00	0.00	3.01
971	1053	6.023603	TCTCTTGTTGGTATACCTTCTCCTT	58.976	40.000	22.41	0.00	36.82	3.36
1019	1101	6.086222	CAGAAATGGTTCGAAATTACAGGTG	58.914	40.000	0.00	0.00	38.90	4.00
1087	1172	6.785076	TGGATTGTTGTCTTAGTTGGGAATA	58.215	36.000	0.00	0.00	0.00	1.75
1096	1181	5.529060	GTCTTAGTTGGGAATATTCAGGCTG	59.471	44.000	17.07	8.58	0.00	4.85
1302	1396	3.938963	TCACCACTCTTGTTCAACAGTTC	59.061	43.478	0.00	0.00	0.00	3.01
1514	1612	0.179137	TGCACCTGAGATCTTACGCG	60.179	55.000	3.53	3.53	0.00	6.01
1924	2036	7.102993	TGCATAATAACAACTCTGCTCTAACA	58.897	34.615	0.00	0.00	0.00	2.41
1957	2069	4.017126	ACGTGTCATATTCCTGAGACTGA	58.983	43.478	0.00	0.00	37.30	3.41
2492	2657	9.322776	TCATTTGTTTTTGTTTTGAATCAAACG	57.677	25.926	8.06	0.00	32.79	3.60
2507	2672	3.777478	TCAAACGCCTTACCTCTAATCG	58.223	45.455	0.00	0.00	0.00	3.34
2747	2915	6.101150	ACCCACATCTGGAGCAAGTTATATAA	59.899	38.462	0.00	0.00	40.55	0.98
2969	3141	0.913451	AGGCAGAGGCAGATGGTTCT	60.913	55.000	0.00	0.00	43.71	3.01
3025	3197	8.812972	ACTGAACACTACTAACCAGATCATTAA	58.187	33.333	0.00	0.00	0.00	1.40
3288	3460	2.037772	CGGGACTGGATCTTTCTATGGG	59.962	54.545	0.00	0.00	0.00	4.00
3658	3933	2.541233	ACTATGAGACAGAGGGCACT	57.459	50.000	0.00	0.00	0.00	4.40
3868	4144	8.834004	ATGACAAGTCCCAGTAAGTACTATTA	57.166	34.615	0.00	0.00	34.13	0.98
3925	4202	6.488006	CAGGCATAAAGCTTACATATCCTGTT	59.512	38.462	20.11	0.87	44.79	3.16
4030	4307	4.024977	CGTTGATGCATCGGATCATTACAA	60.025	41.667	21.34	4.26	29.96	2.41
4071	4348	2.302260	CACATGTGGTTGTTGGTGGTA	58.698	47.619	18.51	0.00	0.00	3.25
4100	4377	3.887621	AGCATTGCAGATTCAGCATTT	57.112	38.095	11.91	0.00	42.33	2.32
4136	4413	3.917072	GTGGAGTCACTTCAGGGAC	57.083	57.895	0.46	0.46	40.58	4.46
4139	4416	2.104963	GTGGAGTCACTTCAGGGACTTT	59.895	50.000	13.06	0.00	44.03	2.66
4145	4422	4.080299	AGTCACTTCAGGGACTTTGACTTT	60.080	41.667	5.86	0.00	41.40	2.66
4190	4467	3.507233	TCAACCATTCATCCTTGCTGTTC	59.493	43.478	0.00	0.00	0.00	3.18
4321	4598	0.110486	TCCTGAAGCCCCAACACTTC	59.890	55.000	0.00	0.00	42.15	3.01
4470	4748	3.318275	GGGAATCAGTCGATGTGCTACTA	59.682	47.826	0.00	0.00	30.13	1.82
4500	4778	3.508012	GTGTGTATGTGGCCCAATACAAA	59.492	43.478	22.56	17.37	32.17	2.83
4589	5673	4.144297	TCAGTTCTGGATTTCCAACCTTG	58.856	43.478	0.18	0.00	46.97	3.61
4607	5691	9.503427	CCAACCTTGAAAATTCTAATTCGATAC	57.497	33.333	0.00	0.00	0.00	2.24
4839	5926	9.530129	CTTAGTTCGTCATGTTATTTTTCAGAC	57.470	33.333	0.00	0.00	0.00	3.51
4843	5930	7.490962	TCGTCATGTTATTTTTCAGACAACT	57.509	32.000	0.00	0.00	0.00	3.16
4915	6002	2.158325	TCTTTTGCTGGAAACCCCTGAT	60.158	45.455	0.00	0.00	36.07	2.90
4916	6003	3.075283	TCTTTTGCTGGAAACCCCTGATA	59.925	43.478	0.00	0.00	36.07	2.15
4917	6004	3.534357	TTTGCTGGAAACCCCTGATAA	57.466	42.857	0.00	0.00	36.07	1.75
5078	6205	5.555017	ACCTTAATCAATAGCGCATGATCT	58.445	37.500	19.30	13.45	35.29	2.75
5088	6215	4.808077	AGCGCATGATCTGTCTTTATTG	57.192	40.909	11.47	0.00	0.00	1.90
5092	6230	4.968181	CGCATGATCTGTCTTTATTGCAAG	59.032	41.667	4.94	0.00	0.00	4.01
5101	6239	2.426738	TCTTTATTGCAAGCCGGATTGG	59.573	45.455	31.83	14.61	42.50	3.16
5247	6409	2.642427	TGTTGTGATTGTGTGAGCACT	58.358	42.857	1.99	0.00	45.44	4.40
5255	6417	1.002868	GTGTGAGCACTGAGGCCAT	60.003	57.895	5.01	0.00	42.13	4.40

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	4.489771	GATGGTGGTGGGCGGGAG	62.490	72.222	0.00	0.00	0.00	4.30
6	7	4.408821	TGAGCGATGGTGGTGGGC	62.409	66.667	0.00	0.00	0.00	5.36
7	8	2.436646	GTGAGCGATGGTGGTGGG	60.437	66.667	0.00	0.00	0.00	4.61
8	9	2.436646	GGTGAGCGATGGTGGTGG	60.437	66.667	0.00	0.00	0.00	4.61
9	10	1.448540	GAGGTGAGCGATGGTGGTG	60.449	63.158	0.00	0.00	0.00	4.17
10	11	2.660064	GGAGGTGAGCGATGGTGGT	61.660	63.158	0.00	0.00	0.00	4.16
11	12	2.187946	GGAGGTGAGCGATGGTGG	59.812	66.667	0.00	0.00	0.00	4.61
12	13	2.187946	GGGAGGTGAGCGATGGTG	59.812	66.667	0.00	0.00	0.00	4.17
13	14	2.284625	TGGGAGGTGAGCGATGGT	60.285	61.111	0.00	0.00	0.00	3.55
14	15	2.187946	GTGGGAGGTGAGCGATGG	59.812	66.667	0.00	0.00	0.00	3.51
15	16	2.187946	GGTGGGAGGTGAGCGATG	59.812	66.667	0.00	0.00	0.00	3.84
16	17	2.039624	AGGTGGGAGGTGAGCGAT	59.960	61.111	0.00	0.00	0.00	4.58
17	18	2.680352	GAGGTGGGAGGTGAGCGA	60.680	66.667	0.00	0.00	0.00	4.93
18	19	4.135153	CGAGGTGGGAGGTGAGCG	62.135	72.222	0.00	0.00	0.00	5.03
19	20	2.680352	TCGAGGTGGGAGGTGAGC	60.680	66.667	0.00	0.00	0.00	4.26
20	21	2.701780	CGTCGAGGTGGGAGGTGAG	61.702	68.421	0.00	0.00	0.00	3.51
21	22	2.675423	CGTCGAGGTGGGAGGTGA	60.675	66.667	0.00	0.00	0.00	4.02
22	23	4.436998	GCGTCGAGGTGGGAGGTG	62.437	72.222	7.01	0.00	0.00	4.00
81	83	9.737427	CTGTAATCTTTTCTCTATCTCGCTAAA	57.263	33.333	0.00	0.00	0.00	1.85
82	84	9.121658	TCTGTAATCTTTTCTCTATCTCGCTAA	57.878	33.333	0.00	0.00	0.00	3.09
85	87	6.861055	CCTCTGTAATCTTTTCTCTATCTCGC	59.139	42.308	0.00	0.00	0.00	5.03
635	675	4.712337	ACAGACGTAGGGAAAAGATCATCT	59.288	41.667	0.00	0.00	0.00	2.90
675	715	4.556233	GCTGTCAATGTCAGTACAGTACA	58.444	43.478	13.37	0.00	41.11	2.90
734	813	7.036220	AGAAAGACCATAATAGTTGACTGACG	58.964	38.462	0.00	0.00	0.00	4.35
871	950	0.321564	CCGAGTGTGCAGGATTGGAA	60.322	55.000	0.00	0.00	0.00	3.53
971	1053	2.052690	CGCCGGGAGAAGGAGAAGA	61.053	63.158	2.18	0.00	0.00	2.87
1019	1101	3.199880	AGCATATAGACTGCAACACCC	57.800	47.619	0.00	0.00	42.15	4.61
1087	1172	0.037326	TTTCGTCGAGCAGCCTGAAT	60.037	50.000	0.00	0.00	0.00	2.57
1096	1181	0.737715	ACAGCCTCATTTCGTCGAGC	60.738	55.000	0.00	0.00	0.00	5.03
1937	2049	7.672983	TTTTTCAGTCTCAGGAATATGACAC	57.327	36.000	0.00	0.00	32.41	3.67
1957	2069	4.278419	GCTGTTACAGGAGTGGACATTTTT	59.722	41.667	14.63	0.00	31.21	1.94
2310	2461	1.073923	GGCTGGGGAAAGAAACTGAGA	59.926	52.381	0.00	0.00	0.00	3.27
2492	2657	1.138266	TGTGCCGATTAGAGGTAAGGC	59.862	52.381	0.00	0.00	44.38	4.35
2507	2672	0.745845	CAGGTGCTCCTACATGTGCC	60.746	60.000	9.11	0.00	43.07	5.01
2747	2915	5.888161	CCAGGATAAGGTGATGCTTTAAAGT	59.112	40.000	16.38	0.00	0.00	2.66
2831	3003	9.713684	ATATGAAATAAAACCAAGATGGGAAGA	57.286	29.630	0.87	0.00	35.07	2.87
2969	3141	6.430925	CAGGTTGGAAGTCATTGAACTCATTA	59.569	38.462	0.00	0.00	0.00	1.90
3025	3197	4.755123	CCATGTCAACGTTTTCTAGGTCTT	59.245	41.667	0.00	0.00	0.00	3.01
3288	3460	4.543590	TTCTCCACCTGAGTCAAGATTC	57.456	45.455	0.00	0.00	42.12	2.52
3658	3933	0.248289	GTCCCATCGGTTCCTCGAAA	59.752	55.000	0.00	0.00	42.69	3.46
3967	4244	8.034804	GCAACCAATTAAAGATTGTAACAGGAT	58.965	33.333	0.00	0.00	0.00	3.24
4071	4348	2.046023	TGCAATGCTAGCGCCAGT	60.046	55.556	10.77	0.00	34.43	4.00
4100	4377	5.428457	ACTCCACTGGATATTTGATGTGGTA	59.572	40.000	0.00	0.00	43.64	3.25
4139	4416	1.134220	AGCTTGACGAACCCAAAGTCA	60.134	47.619	0.00	0.00	42.36	3.41
4145	4422	1.300620	CGTGAGCTTGACGAACCCA	60.301	57.895	12.56	0.00	39.21	4.51
4190	4467	2.400399	TCACGGCTTTTCTTGTACTCG	58.600	47.619	0.00	0.00	0.00	4.18
4321	4598	1.904287	TCAACTGATTCCCCGTTTGG	58.096	50.000	0.00	0.00	0.00	3.28
4470	4748	2.290071	GGCCACATACACACCAGTAACT	60.290	50.000	0.00	0.00	0.00	2.24
4549	4827	6.700520	AGAACTGAAACTTAAGAACCGTGTAG	59.299	38.462	10.09	0.00	0.00	2.74
4607	5691	8.597227	CCCGGTTTTAAACTTAAAAACTCAAAG	58.403	33.333	16.64	5.05	44.25	2.77
4625	5709	2.524306	TGAATTCAGCATCCCGGTTTT	58.476	42.857	3.38	0.00	0.00	2.43
4744	5831	5.280215	CCCCTTACCATTTTGTGCCAAATTA	60.280	40.000	1.89	0.00	0.00	1.40
4760	5847	2.684630	CGGGTTTATTGGTCCCCTTACC	60.685	54.545	0.00	0.00	38.09	2.85
4780	5867	5.505173	TTCTTTATTACTACCTCCGTCCG	57.495	43.478	0.00	0.00	0.00	4.79
4839	5926	3.703001	ACCAGGAACATCAGGTAGTTG	57.297	47.619	0.00	0.00	31.32	3.16
4843	5930	5.338871	GGTTGATTACCAGGAACATCAGGTA	60.339	44.000	0.00	0.00	46.92	3.08
4915	6002	7.121463	ACTGCGTGTTGATTAACCCAATTATTA	59.879	33.333	0.00	0.00	35.92	0.98
4916	6003	6.071616	ACTGCGTGTTGATTAACCCAATTATT	60.072	34.615	0.00	0.00	35.92	1.40
4917	6004	5.417580	ACTGCGTGTTGATTAACCCAATTAT	59.582	36.000	0.00	0.00	35.92	1.28
5078	6205	2.192664	TCCGGCTTGCAATAAAGACA	57.807	45.000	0.00	0.00	34.60	3.41
5088	6215	0.817013	TCATTTCCAATCCGGCTTGC	59.183	50.000	12.62	0.00	33.14	4.01
5092	6230	0.101219	GTGCTCATTTCCAATCCGGC	59.899	55.000	0.00	0.00	33.14	6.13
5101	6239	4.237724	GGTTTTGCTAAGGTGCTCATTTC	58.762	43.478	0.00	0.00	0.00	2.17
5168	6329	4.879545	TCGGCATAAGGTAAGAAATCAACC	59.120	41.667	0.00	0.00	0.00	3.77
5181	6343	1.265635	CGTCTCTCTCTCGGCATAAGG	59.734	57.143	0.00	0.00	0.00	2.69
5265	6427	0.326238	ACTTATCCTCCTTCCCGCCA	60.326	55.000	0.00	0.00	0.00	5.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.