Multiple sequence alignment - TraesCS5B01G082700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G082700 chr5B 100.000 5308 0 0 1 5308 103470028 103475335 0.000000e+00 9803.0
1 TraesCS5B01G082700 chr5B 96.791 4705 112 12 611 5308 105709920 105714592 0.000000e+00 7816.0
2 TraesCS5B01G082700 chr5B 98.641 515 5 1 114 626 105701716 105702230 0.000000e+00 911.0
3 TraesCS5B01G082700 chr5B 82.090 871 131 20 2944 3797 105769860 105770722 0.000000e+00 721.0
4 TraesCS5B01G082700 chr5B 86.141 368 46 5 3433 3797 103572170 103572535 4.980000e-105 392.0
5 TraesCS5B01G082700 chr5B 76.321 549 99 26 1552 2081 103570220 103570756 1.130000e-66 265.0
6 TraesCS5B01G082700 chr5B 75.503 547 95 30 1552 2081 105768497 105769021 1.150000e-56 231.0
7 TraesCS5B01G082700 chr5B 85.629 167 21 3 2212 2377 103570906 103571070 7.070000e-39 172.0
8 TraesCS5B01G082700 chr5B 85.276 163 22 2 2209 2370 105769163 105769324 3.290000e-37 167.0
9 TraesCS5B01G082700 chr5B 78.082 146 29 2 5165 5308 662606986 662607130 7.320000e-14 89.8
10 TraesCS5B01G082700 chr5B 80.000 130 14 5 5042 5161 243433266 243433393 9.470000e-13 86.1
11 TraesCS5B01G082700 chr5B 82.000 100 10 5 1733 1831 103322539 103322631 1.580000e-10 78.7
12 TraesCS5B01G082700 chr5B 91.071 56 5 0 5042 5097 398070455 398070400 5.700000e-10 76.8
13 TraesCS5B01G082700 chr5A 93.996 5047 225 26 32 5031 92442341 92447356 0.000000e+00 7570.0
14 TraesCS5B01G082700 chr5A 87.931 348 40 2 3451 3797 106748637 106748291 4.950000e-110 409.0
15 TraesCS5B01G082700 chr5A 76.438 539 92 26 1558 2081 106750522 106750004 5.270000e-65 259.0
16 TraesCS5B01G082700 chr5A 79.276 304 28 12 5040 5308 92447406 92447709 4.220000e-41 180.0
17 TraesCS5B01G082700 chr5A 84.756 164 22 3 2215 2377 106749855 106749694 1.530000e-35 161.0
18 TraesCS5B01G082700 chr5A 83.846 130 20 1 5176 5305 60520226 60520354 7.220000e-24 122.0
19 TraesCS5B01G082700 chr5A 81.746 126 16 4 5042 5161 439861002 439860878 1.220000e-16 99.0
20 TraesCS5B01G082700 chr5D 94.891 3543 152 16 1044 4565 97275311 97278845 0.000000e+00 5513.0
21 TraesCS5B01G082700 chr5D 88.235 680 21 27 32 671 97274302 97274962 0.000000e+00 758.0
22 TraesCS5B01G082700 chr5D 81.988 855 122 24 2944 3779 97325152 97325993 0.000000e+00 697.0
23 TraesCS5B01G082700 chr5D 84.836 488 36 21 4554 5038 97279640 97280092 1.740000e-124 457.0
24 TraesCS5B01G082700 chr5D 75.956 549 104 23 1552 2081 97323771 97324310 1.900000e-64 257.0
25 TraesCS5B01G082700 chr5D 85.276 163 22 2 2209 2370 97324454 97324615 3.290000e-37 167.0
26 TraesCS5B01G082700 chr5D 82.222 135 10 8 5039 5161 220708022 220708154 2.610000e-18 104.0
27 TraesCS5B01G082700 chr7A 84.314 153 21 2 5153 5303 514669388 514669237 4.280000e-31 147.0
28 TraesCS5B01G082700 chr3D 81.879 149 24 2 5161 5308 526209763 526209617 7.220000e-24 122.0
29 TraesCS5B01G082700 chr4A 85.185 108 13 3 5173 5280 631217974 631218078 2.020000e-19 108.0
30 TraesCS5B01G082700 chr2D 83.333 120 15 4 5042 5161 335136826 335136940 7.270000e-19 106.0
31 TraesCS5B01G082700 chr3A 81.203 133 21 4 5173 5305 717261620 717261748 2.610000e-18 104.0
32 TraesCS5B01G082700 chr3A 80.000 135 22 3 5174 5303 30353799 30353933 1.570000e-15 95.3
33 TraesCS5B01G082700 chr1D 79.839 124 24 1 5161 5284 80016485 80016607 7.320000e-14 89.8
34 TraesCS5B01G082700 chr6D 83.158 95 13 3 4810 4902 65794569 65794476 3.410000e-12 84.2
35 TraesCS5B01G082700 chr6D 78.740 127 15 4 5043 5158 284503423 284503548 2.050000e-09 75.0
36 TraesCS5B01G082700 chr6B 90.000 60 4 2 4746 4803 584861852 584861911 5.700000e-10 76.8
37 TraesCS5B01G082700 chr2B 92.453 53 4 0 4746 4798 707289345 707289397 5.700000e-10 76.8
38 TraesCS5B01G082700 chr2B 97.436 39 1 0 4764 4802 456586525 456586487 3.430000e-07 67.6
39 TraesCS5B01G082700 chr7B 90.909 55 5 0 4746 4800 397870484 397870538 2.050000e-09 75.0
40 TraesCS5B01G082700 chr7B 92.308 52 2 2 4746 4796 303761622 303761672 7.370000e-09 73.1
41 TraesCS5B01G082700 chr7B 92.157 51 2 2 4746 4795 225716289 225716338 2.650000e-08 71.3
42 TraesCS5B01G082700 chr7B 87.302 63 6 2 4746 4807 408246823 408246762 2.650000e-08 71.3
43 TraesCS5B01G082700 chrUn 95.455 44 2 0 5042 5085 37815016 37815059 2.650000e-08 71.3
44 TraesCS5B01G082700 chr1A 97.059 34 1 0 3105 3138 377013540 377013573 2.060000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G082700 chr5B 103470028 103475335 5307 False 9803.000000 9803 100.000000 1 5308 1 chr5B.!!$F2 5307
1 TraesCS5B01G082700 chr5B 105709920 105714592 4672 False 7816.000000 7816 96.791000 611 5308 1 chr5B.!!$F4 4697
2 TraesCS5B01G082700 chr5B 105701716 105702230 514 False 911.000000 911 98.641000 114 626 1 chr5B.!!$F3 512
3 TraesCS5B01G082700 chr5B 105768497 105770722 2225 False 373.000000 721 80.956333 1552 3797 3 chr5B.!!$F8 2245
4 TraesCS5B01G082700 chr5B 103570220 103572535 2315 False 276.333333 392 82.697000 1552 3797 3 chr5B.!!$F7 2245
5 TraesCS5B01G082700 chr5A 92442341 92447709 5368 False 3875.000000 7570 86.636000 32 5308 2 chr5A.!!$F2 5276
6 TraesCS5B01G082700 chr5A 106748291 106750522 2231 True 276.333333 409 83.041667 1558 3797 3 chr5A.!!$R2 2239
7 TraesCS5B01G082700 chr5D 97274302 97280092 5790 False 2242.666667 5513 89.320667 32 5038 3 chr5D.!!$F2 5006
8 TraesCS5B01G082700 chr5D 97323771 97325993 2222 False 373.666667 697 81.073333 1552 3779 3 chr5D.!!$F3 2227

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 950 1.347707 TGTGCATTCTTCCTCGGTTCT 59.652 47.619 0.00 0.00 0.00 3.01 F
1514 1612 0.179137 TGCACCTGAGATCTTACGCG 60.179 55.000 3.53 3.53 0.00 6.01 F
2969 3141 0.913451 AGGCAGAGGCAGATGGTTCT 60.913 55.000 0.00 0.00 43.71 3.01 F
3288 3460 2.037772 CGGGACTGGATCTTTCTATGGG 59.962 54.545 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2507 2672 0.745845 CAGGTGCTCCTACATGTGCC 60.746 60.000 9.11 0.0 43.07 5.01 R
3288 3460 4.543590 TTCTCCACCTGAGTCAAGATTC 57.456 45.455 0.00 0.0 42.12 2.52 R
4139 4416 1.134220 AGCTTGACGAACCCAAAGTCA 60.134 47.619 0.00 0.0 42.36 3.41 R
5092 6230 0.101219 GTGCTCATTTCCAATCCGGC 59.899 55.000 0.00 0.0 33.14 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.489771 CTCCCGCCCACCACCATC 62.490 72.222 0.00 0.00 0.00 3.51
23 24 4.408821 GCCCACCACCATCGCTCA 62.409 66.667 0.00 0.00 0.00 4.26
24 25 2.436646 CCCACCACCATCGCTCAC 60.437 66.667 0.00 0.00 0.00 3.51
25 26 2.436646 CCACCACCATCGCTCACC 60.437 66.667 0.00 0.00 0.00 4.02
26 27 2.665000 CACCACCATCGCTCACCT 59.335 61.111 0.00 0.00 0.00 4.00
27 28 1.448540 CACCACCATCGCTCACCTC 60.449 63.158 0.00 0.00 0.00 3.85
28 29 2.187946 CCACCATCGCTCACCTCC 59.812 66.667 0.00 0.00 0.00 4.30
29 30 2.187946 CACCATCGCTCACCTCCC 59.812 66.667 0.00 0.00 0.00 4.30
30 31 2.284625 ACCATCGCTCACCTCCCA 60.285 61.111 0.00 0.00 0.00 4.37
675 715 6.231211 ACGTCTGTCAAATTAATCTTCACCT 58.769 36.000 0.00 0.00 0.00 4.00
871 950 1.347707 TGTGCATTCTTCCTCGGTTCT 59.652 47.619 0.00 0.00 0.00 3.01
971 1053 6.023603 TCTCTTGTTGGTATACCTTCTCCTT 58.976 40.000 22.41 0.00 36.82 3.36
1019 1101 6.086222 CAGAAATGGTTCGAAATTACAGGTG 58.914 40.000 0.00 0.00 38.90 4.00
1087 1172 6.785076 TGGATTGTTGTCTTAGTTGGGAATA 58.215 36.000 0.00 0.00 0.00 1.75
1096 1181 5.529060 GTCTTAGTTGGGAATATTCAGGCTG 59.471 44.000 17.07 8.58 0.00 4.85
1302 1396 3.938963 TCACCACTCTTGTTCAACAGTTC 59.061 43.478 0.00 0.00 0.00 3.01
1514 1612 0.179137 TGCACCTGAGATCTTACGCG 60.179 55.000 3.53 3.53 0.00 6.01
1924 2036 7.102993 TGCATAATAACAACTCTGCTCTAACA 58.897 34.615 0.00 0.00 0.00 2.41
1957 2069 4.017126 ACGTGTCATATTCCTGAGACTGA 58.983 43.478 0.00 0.00 37.30 3.41
2492 2657 9.322776 TCATTTGTTTTTGTTTTGAATCAAACG 57.677 25.926 8.06 0.00 32.79 3.60
2507 2672 3.777478 TCAAACGCCTTACCTCTAATCG 58.223 45.455 0.00 0.00 0.00 3.34
2747 2915 6.101150 ACCCACATCTGGAGCAAGTTATATAA 59.899 38.462 0.00 0.00 40.55 0.98
2969 3141 0.913451 AGGCAGAGGCAGATGGTTCT 60.913 55.000 0.00 0.00 43.71 3.01
3025 3197 8.812972 ACTGAACACTACTAACCAGATCATTAA 58.187 33.333 0.00 0.00 0.00 1.40
3288 3460 2.037772 CGGGACTGGATCTTTCTATGGG 59.962 54.545 0.00 0.00 0.00 4.00
3658 3933 2.541233 ACTATGAGACAGAGGGCACT 57.459 50.000 0.00 0.00 0.00 4.40
3868 4144 8.834004 ATGACAAGTCCCAGTAAGTACTATTA 57.166 34.615 0.00 0.00 34.13 0.98
3925 4202 6.488006 CAGGCATAAAGCTTACATATCCTGTT 59.512 38.462 20.11 0.87 44.79 3.16
4030 4307 4.024977 CGTTGATGCATCGGATCATTACAA 60.025 41.667 21.34 4.26 29.96 2.41
4071 4348 2.302260 CACATGTGGTTGTTGGTGGTA 58.698 47.619 18.51 0.00 0.00 3.25
4100 4377 3.887621 AGCATTGCAGATTCAGCATTT 57.112 38.095 11.91 0.00 42.33 2.32
4136 4413 3.917072 GTGGAGTCACTTCAGGGAC 57.083 57.895 0.46 0.46 40.58 4.46
4139 4416 2.104963 GTGGAGTCACTTCAGGGACTTT 59.895 50.000 13.06 0.00 44.03 2.66
4145 4422 4.080299 AGTCACTTCAGGGACTTTGACTTT 60.080 41.667 5.86 0.00 41.40 2.66
4190 4467 3.507233 TCAACCATTCATCCTTGCTGTTC 59.493 43.478 0.00 0.00 0.00 3.18
4321 4598 0.110486 TCCTGAAGCCCCAACACTTC 59.890 55.000 0.00 0.00 42.15 3.01
4470 4748 3.318275 GGGAATCAGTCGATGTGCTACTA 59.682 47.826 0.00 0.00 30.13 1.82
4500 4778 3.508012 GTGTGTATGTGGCCCAATACAAA 59.492 43.478 22.56 17.37 32.17 2.83
4589 5673 4.144297 TCAGTTCTGGATTTCCAACCTTG 58.856 43.478 0.18 0.00 46.97 3.61
4607 5691 9.503427 CCAACCTTGAAAATTCTAATTCGATAC 57.497 33.333 0.00 0.00 0.00 2.24
4839 5926 9.530129 CTTAGTTCGTCATGTTATTTTTCAGAC 57.470 33.333 0.00 0.00 0.00 3.51
4843 5930 7.490962 TCGTCATGTTATTTTTCAGACAACT 57.509 32.000 0.00 0.00 0.00 3.16
4915 6002 2.158325 TCTTTTGCTGGAAACCCCTGAT 60.158 45.455 0.00 0.00 36.07 2.90
4916 6003 3.075283 TCTTTTGCTGGAAACCCCTGATA 59.925 43.478 0.00 0.00 36.07 2.15
4917 6004 3.534357 TTTGCTGGAAACCCCTGATAA 57.466 42.857 0.00 0.00 36.07 1.75
5078 6205 5.555017 ACCTTAATCAATAGCGCATGATCT 58.445 37.500 19.30 13.45 35.29 2.75
5088 6215 4.808077 AGCGCATGATCTGTCTTTATTG 57.192 40.909 11.47 0.00 0.00 1.90
5092 6230 4.968181 CGCATGATCTGTCTTTATTGCAAG 59.032 41.667 4.94 0.00 0.00 4.01
5101 6239 2.426738 TCTTTATTGCAAGCCGGATTGG 59.573 45.455 31.83 14.61 42.50 3.16
5247 6409 2.642427 TGTTGTGATTGTGTGAGCACT 58.358 42.857 1.99 0.00 45.44 4.40
5255 6417 1.002868 GTGTGAGCACTGAGGCCAT 60.003 57.895 5.01 0.00 42.13 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 4.489771 GATGGTGGTGGGCGGGAG 62.490 72.222 0.00 0.00 0.00 4.30
6 7 4.408821 TGAGCGATGGTGGTGGGC 62.409 66.667 0.00 0.00 0.00 5.36
7 8 2.436646 GTGAGCGATGGTGGTGGG 60.437 66.667 0.00 0.00 0.00 4.61
8 9 2.436646 GGTGAGCGATGGTGGTGG 60.437 66.667 0.00 0.00 0.00 4.61
9 10 1.448540 GAGGTGAGCGATGGTGGTG 60.449 63.158 0.00 0.00 0.00 4.17
10 11 2.660064 GGAGGTGAGCGATGGTGGT 61.660 63.158 0.00 0.00 0.00 4.16
11 12 2.187946 GGAGGTGAGCGATGGTGG 59.812 66.667 0.00 0.00 0.00 4.61
12 13 2.187946 GGGAGGTGAGCGATGGTG 59.812 66.667 0.00 0.00 0.00 4.17
13 14 2.284625 TGGGAGGTGAGCGATGGT 60.285 61.111 0.00 0.00 0.00 3.55
14 15 2.187946 GTGGGAGGTGAGCGATGG 59.812 66.667 0.00 0.00 0.00 3.51
15 16 2.187946 GGTGGGAGGTGAGCGATG 59.812 66.667 0.00 0.00 0.00 3.84
16 17 2.039624 AGGTGGGAGGTGAGCGAT 59.960 61.111 0.00 0.00 0.00 4.58
17 18 2.680352 GAGGTGGGAGGTGAGCGA 60.680 66.667 0.00 0.00 0.00 4.93
18 19 4.135153 CGAGGTGGGAGGTGAGCG 62.135 72.222 0.00 0.00 0.00 5.03
19 20 2.680352 TCGAGGTGGGAGGTGAGC 60.680 66.667 0.00 0.00 0.00 4.26
20 21 2.701780 CGTCGAGGTGGGAGGTGAG 61.702 68.421 0.00 0.00 0.00 3.51
21 22 2.675423 CGTCGAGGTGGGAGGTGA 60.675 66.667 0.00 0.00 0.00 4.02
22 23 4.436998 GCGTCGAGGTGGGAGGTG 62.437 72.222 7.01 0.00 0.00 4.00
81 83 9.737427 CTGTAATCTTTTCTCTATCTCGCTAAA 57.263 33.333 0.00 0.00 0.00 1.85
82 84 9.121658 TCTGTAATCTTTTCTCTATCTCGCTAA 57.878 33.333 0.00 0.00 0.00 3.09
85 87 6.861055 CCTCTGTAATCTTTTCTCTATCTCGC 59.139 42.308 0.00 0.00 0.00 5.03
635 675 4.712337 ACAGACGTAGGGAAAAGATCATCT 59.288 41.667 0.00 0.00 0.00 2.90
675 715 4.556233 GCTGTCAATGTCAGTACAGTACA 58.444 43.478 13.37 0.00 41.11 2.90
734 813 7.036220 AGAAAGACCATAATAGTTGACTGACG 58.964 38.462 0.00 0.00 0.00 4.35
871 950 0.321564 CCGAGTGTGCAGGATTGGAA 60.322 55.000 0.00 0.00 0.00 3.53
971 1053 2.052690 CGCCGGGAGAAGGAGAAGA 61.053 63.158 2.18 0.00 0.00 2.87
1019 1101 3.199880 AGCATATAGACTGCAACACCC 57.800 47.619 0.00 0.00 42.15 4.61
1087 1172 0.037326 TTTCGTCGAGCAGCCTGAAT 60.037 50.000 0.00 0.00 0.00 2.57
1096 1181 0.737715 ACAGCCTCATTTCGTCGAGC 60.738 55.000 0.00 0.00 0.00 5.03
1937 2049 7.672983 TTTTTCAGTCTCAGGAATATGACAC 57.327 36.000 0.00 0.00 32.41 3.67
1957 2069 4.278419 GCTGTTACAGGAGTGGACATTTTT 59.722 41.667 14.63 0.00 31.21 1.94
2310 2461 1.073923 GGCTGGGGAAAGAAACTGAGA 59.926 52.381 0.00 0.00 0.00 3.27
2492 2657 1.138266 TGTGCCGATTAGAGGTAAGGC 59.862 52.381 0.00 0.00 44.38 4.35
2507 2672 0.745845 CAGGTGCTCCTACATGTGCC 60.746 60.000 9.11 0.00 43.07 5.01
2747 2915 5.888161 CCAGGATAAGGTGATGCTTTAAAGT 59.112 40.000 16.38 0.00 0.00 2.66
2831 3003 9.713684 ATATGAAATAAAACCAAGATGGGAAGA 57.286 29.630 0.87 0.00 35.07 2.87
2969 3141 6.430925 CAGGTTGGAAGTCATTGAACTCATTA 59.569 38.462 0.00 0.00 0.00 1.90
3025 3197 4.755123 CCATGTCAACGTTTTCTAGGTCTT 59.245 41.667 0.00 0.00 0.00 3.01
3288 3460 4.543590 TTCTCCACCTGAGTCAAGATTC 57.456 45.455 0.00 0.00 42.12 2.52
3658 3933 0.248289 GTCCCATCGGTTCCTCGAAA 59.752 55.000 0.00 0.00 42.69 3.46
3967 4244 8.034804 GCAACCAATTAAAGATTGTAACAGGAT 58.965 33.333 0.00 0.00 0.00 3.24
4071 4348 2.046023 TGCAATGCTAGCGCCAGT 60.046 55.556 10.77 0.00 34.43 4.00
4100 4377 5.428457 ACTCCACTGGATATTTGATGTGGTA 59.572 40.000 0.00 0.00 43.64 3.25
4139 4416 1.134220 AGCTTGACGAACCCAAAGTCA 60.134 47.619 0.00 0.00 42.36 3.41
4145 4422 1.300620 CGTGAGCTTGACGAACCCA 60.301 57.895 12.56 0.00 39.21 4.51
4190 4467 2.400399 TCACGGCTTTTCTTGTACTCG 58.600 47.619 0.00 0.00 0.00 4.18
4321 4598 1.904287 TCAACTGATTCCCCGTTTGG 58.096 50.000 0.00 0.00 0.00 3.28
4470 4748 2.290071 GGCCACATACACACCAGTAACT 60.290 50.000 0.00 0.00 0.00 2.24
4549 4827 6.700520 AGAACTGAAACTTAAGAACCGTGTAG 59.299 38.462 10.09 0.00 0.00 2.74
4607 5691 8.597227 CCCGGTTTTAAACTTAAAAACTCAAAG 58.403 33.333 16.64 5.05 44.25 2.77
4625 5709 2.524306 TGAATTCAGCATCCCGGTTTT 58.476 42.857 3.38 0.00 0.00 2.43
4744 5831 5.280215 CCCCTTACCATTTTGTGCCAAATTA 60.280 40.000 1.89 0.00 0.00 1.40
4760 5847 2.684630 CGGGTTTATTGGTCCCCTTACC 60.685 54.545 0.00 0.00 38.09 2.85
4780 5867 5.505173 TTCTTTATTACTACCTCCGTCCG 57.495 43.478 0.00 0.00 0.00 4.79
4839 5926 3.703001 ACCAGGAACATCAGGTAGTTG 57.297 47.619 0.00 0.00 31.32 3.16
4843 5930 5.338871 GGTTGATTACCAGGAACATCAGGTA 60.339 44.000 0.00 0.00 46.92 3.08
4915 6002 7.121463 ACTGCGTGTTGATTAACCCAATTATTA 59.879 33.333 0.00 0.00 35.92 0.98
4916 6003 6.071616 ACTGCGTGTTGATTAACCCAATTATT 60.072 34.615 0.00 0.00 35.92 1.40
4917 6004 5.417580 ACTGCGTGTTGATTAACCCAATTAT 59.582 36.000 0.00 0.00 35.92 1.28
5078 6205 2.192664 TCCGGCTTGCAATAAAGACA 57.807 45.000 0.00 0.00 34.60 3.41
5088 6215 0.817013 TCATTTCCAATCCGGCTTGC 59.183 50.000 12.62 0.00 33.14 4.01
5092 6230 0.101219 GTGCTCATTTCCAATCCGGC 59.899 55.000 0.00 0.00 33.14 6.13
5101 6239 4.237724 GGTTTTGCTAAGGTGCTCATTTC 58.762 43.478 0.00 0.00 0.00 2.17
5168 6329 4.879545 TCGGCATAAGGTAAGAAATCAACC 59.120 41.667 0.00 0.00 0.00 3.77
5181 6343 1.265635 CGTCTCTCTCTCGGCATAAGG 59.734 57.143 0.00 0.00 0.00 2.69
5265 6427 0.326238 ACTTATCCTCCTTCCCGCCA 60.326 55.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.