Multiple sequence alignment - TraesCS5B01G081500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G081500 chr5B 100.000 4446 0 0 1 4446 102160878 102165323 0.000000e+00 8211.0
1 TraesCS5B01G081500 chr5D 91.173 4067 153 69 124 4092 95272656 95276614 0.000000e+00 5332.0
2 TraesCS5B01G081500 chr5A 90.750 3946 150 81 1 3829 89976716 89980563 0.000000e+00 5066.0
3 TraesCS5B01G081500 chr5A 92.381 105 7 1 3986 4089 89982359 89982463 9.960000e-32 148.0
4 TraesCS5B01G081500 chr5A 94.340 53 2 1 3603 3655 43536582 43536633 3.690000e-11 80.5
5 TraesCS5B01G081500 chr3B 97.472 356 9 0 4091 4446 581708893 581708538 3.800000e-170 608.0
6 TraesCS5B01G081500 chr2B 96.000 350 14 0 4097 4446 761322128 761321779 1.790000e-158 569.0
7 TraesCS5B01G081500 chr2B 92.416 356 23 2 4091 4446 360971931 360972282 5.130000e-139 505.0
8 TraesCS5B01G081500 chr2B 92.157 357 23 3 4092 4443 618644153 618644509 2.390000e-137 499.0
9 TraesCS5B01G081500 chr6B 93.855 358 19 2 4091 4446 644936728 644936372 1.820000e-148 536.0
10 TraesCS5B01G081500 chr6B 93.162 351 23 1 4096 4446 260121569 260121918 8.530000e-142 514.0
11 TraesCS5B01G081500 chr6B 78.912 294 55 5 1457 1748 378960427 378960139 4.540000e-45 193.0
12 TraesCS5B01G081500 chr1B 91.573 356 26 2 4091 4446 159215982 159216333 5.170000e-134 488.0
13 TraesCS5B01G081500 chr1B 90.730 356 24 5 4096 4446 628001617 628001266 2.420000e-127 466.0
14 TraesCS5B01G081500 chr7B 90.986 355 26 1 4092 4446 62774313 62773965 1.450000e-129 473.0
15 TraesCS5B01G081500 chr7B 92.000 175 14 0 1555 1729 332813124 332812950 3.430000e-61 246.0
16 TraesCS5B01G081500 chr7B 92.086 139 9 1 915 1053 332813611 332813475 1.260000e-45 195.0
17 TraesCS5B01G081500 chr1A 83.019 477 36 23 3363 3838 345998382 345998814 1.500000e-104 390.0
18 TraesCS5B01G081500 chr1A 97.826 46 0 1 915 959 549593184 549593139 1.330000e-10 78.7
19 TraesCS5B01G081500 chr4D 81.749 263 39 7 1450 1709 173572937 173573193 1.250000e-50 211.0
20 TraesCS5B01G081500 chr4A 81.749 263 39 7 1450 1709 227093928 227093672 1.250000e-50 211.0
21 TraesCS5B01G081500 chr4A 81.643 207 15 9 3363 3567 168713953 168713768 2.770000e-32 150.0
22 TraesCS5B01G081500 chr4B 81.395 258 39 7 1455 1709 246319270 246319019 7.540000e-48 202.0
23 TraesCS5B01G081500 chr4B 80.526 190 27 6 3126 3313 122712407 122712226 2.160000e-28 137.0
24 TraesCS5B01G081500 chr6D 79.252 294 54 5 1457 1748 226788095 226787807 9.750000e-47 198.0
25 TraesCS5B01G081500 chr6A 78.571 294 56 5 1457 1748 264831350 264831638 2.110000e-43 187.0
26 TraesCS5B01G081500 chr1D 78.594 313 31 12 3216 3526 156290355 156290077 1.640000e-39 174.0
27 TraesCS5B01G081500 chr2A 83.422 187 23 4 3126 3311 645826178 645825999 2.750000e-37 167.0
28 TraesCS5B01G081500 chr3A 97.826 46 0 1 915 959 23253510 23253555 1.330000e-10 78.7
29 TraesCS5B01G081500 chr3D 90.698 43 3 1 2759 2801 312715942 312715901 6.210000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G081500 chr5B 102160878 102165323 4445 False 8211.0 8211 100.0000 1 4446 1 chr5B.!!$F1 4445
1 TraesCS5B01G081500 chr5D 95272656 95276614 3958 False 5332.0 5332 91.1730 124 4092 1 chr5D.!!$F1 3968
2 TraesCS5B01G081500 chr5A 89976716 89982463 5747 False 2607.0 5066 91.5655 1 4089 2 chr5A.!!$F2 4088
3 TraesCS5B01G081500 chr7B 332812950 332813611 661 True 220.5 246 92.0430 915 1729 2 chr7B.!!$R2 814

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 891 0.108992 CATTTGCATTGCTCGTGCCT 60.109 50.0 10.49 0.0 41.83 4.75 F
1445 1550 0.103937 CAATGGCGGGTTGTTGTTGT 59.896 50.0 0.00 0.0 0.00 3.32 F
1446 1551 0.827368 AATGGCGGGTTGTTGTTGTT 59.173 45.0 0.00 0.0 0.00 2.83 F
1447 1552 0.103937 ATGGCGGGTTGTTGTTGTTG 59.896 50.0 0.00 0.0 0.00 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2481 2667 0.037232 CGTTGTTCCTCCTCCTGGAC 60.037 60.000 0.00 0.00 37.46 4.02 R
3337 3560 0.314302 GAGGCATTGAGGCATGCATC 59.686 55.000 24.81 24.81 45.16 3.91 R
3356 3579 2.107552 TCAGGGGAATTAATTAGCCCGG 59.892 50.000 15.42 11.53 41.63 5.73 R
3455 3678 2.043852 GCCTCTCCCTCGGTCTCA 60.044 66.667 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 3.726557 AACAGATGGTGATCACATGGT 57.273 42.857 26.47 14.82 0.00 3.55
32 33 4.142609 ACAGATGGTGATCACATGGTAC 57.857 45.455 26.47 9.18 0.00 3.34
33 34 3.118261 ACAGATGGTGATCACATGGTACC 60.118 47.826 26.47 4.43 0.00 3.34
34 35 3.135348 CAGATGGTGATCACATGGTACCT 59.865 47.826 26.47 10.41 32.68 3.08
49 55 2.307686 GGTACCTCCATGTTTCTCCCAA 59.692 50.000 4.06 0.00 35.97 4.12
69 75 5.010617 CCCAAACAAACCAGCACTACTTAAT 59.989 40.000 0.00 0.00 0.00 1.40
83 93 9.672673 AGCACTACTTAATTAATCATCACTGTT 57.327 29.630 0.00 0.00 0.00 3.16
99 109 7.928167 TCATCACTGTTATTAACCTAGCATCAG 59.072 37.037 4.17 0.00 0.00 2.90
121 135 3.727726 CGCCATCATCACATAACAGGTA 58.272 45.455 0.00 0.00 0.00 3.08
122 136 3.742882 CGCCATCATCACATAACAGGTAG 59.257 47.826 0.00 0.00 0.00 3.18
153 167 5.240844 GGTGCTAATTAAATCCGTTAGCCAT 59.759 40.000 12.83 0.00 45.97 4.40
207 221 0.765135 TGGAGACCGGGAGAAAACCA 60.765 55.000 6.32 2.44 0.00 3.67
217 231 1.074889 GGAGAAAACCAGGTAGGCCAA 59.925 52.381 5.01 0.00 43.14 4.52
257 271 0.583438 GGCTAGTACACGCATGCATG 59.417 55.000 22.70 22.70 0.00 4.06
354 368 6.321945 TCCTATACTTGCATGCACATCAATTT 59.678 34.615 22.58 2.76 0.00 1.82
366 380 5.302568 TGCACATCAATTTCTTTGACTTCCT 59.697 36.000 0.00 0.00 46.80 3.36
377 391 6.342338 TCTTTGACTTCCTACAGTAACCTC 57.658 41.667 0.00 0.00 0.00 3.85
380 394 6.681729 TTGACTTCCTACAGTAACCTCATT 57.318 37.500 0.00 0.00 0.00 2.57
453 468 8.478066 ACAGAGAAAAGTATGCATACATGTAGA 58.522 33.333 32.69 0.00 37.04 2.59
454 469 9.486497 CAGAGAAAAGTATGCATACATGTAGAT 57.514 33.333 32.69 15.62 37.04 1.98
455 470 9.486497 AGAGAAAAGTATGCATACATGTAGATG 57.514 33.333 32.69 7.92 37.04 2.90
507 533 2.876079 GCACCTGTTCTTACTTCCCTGG 60.876 54.545 0.00 0.00 0.00 4.45
519 545 6.787957 TCTTACTTCCCTGGGAATATAAGAGG 59.212 42.308 33.29 22.49 40.44 3.69
538 564 1.967779 GGGGTTGTTGCACTTAACCAT 59.032 47.619 21.02 0.00 44.37 3.55
541 567 2.403259 GTTGTTGCACTTAACCATGGC 58.597 47.619 13.04 0.00 0.00 4.40
542 568 1.697284 TGTTGCACTTAACCATGGCA 58.303 45.000 13.04 0.00 0.00 4.92
544 570 0.602562 TTGCACTTAACCATGGCAGC 59.397 50.000 13.04 7.65 35.68 5.25
545 571 1.250154 TGCACTTAACCATGGCAGCC 61.250 55.000 13.04 3.66 0.00 4.85
546 572 1.948721 GCACTTAACCATGGCAGCCC 61.949 60.000 13.04 0.00 0.00 5.19
580 609 4.422073 TCTTTAGCATGGTGTGATAGGG 57.578 45.455 7.89 0.00 29.08 3.53
581 610 3.136443 TCTTTAGCATGGTGTGATAGGGG 59.864 47.826 7.89 0.00 29.08 4.79
582 611 1.434188 TAGCATGGTGTGATAGGGGG 58.566 55.000 7.89 0.00 0.00 5.40
623 680 5.046522 TCCCTCCCCATTTTTATCTTCTCT 58.953 41.667 0.00 0.00 0.00 3.10
705 762 3.511934 CGAGGAGGAAGAAGAGGAGAAAA 59.488 47.826 0.00 0.00 0.00 2.29
788 848 8.862091 ATTTCCTTTCTATCTTTAGGAGGAGA 57.138 34.615 0.00 0.00 38.39 3.71
829 891 0.108992 CATTTGCATTGCTCGTGCCT 60.109 50.000 10.49 0.00 41.83 4.75
858 920 4.154347 GGCAGAGGAGACAGGGCG 62.154 72.222 0.00 0.00 0.00 6.13
859 921 4.154347 GCAGAGGAGACAGGGCGG 62.154 72.222 0.00 0.00 0.00 6.13
860 922 3.465403 CAGAGGAGACAGGGCGGG 61.465 72.222 0.00 0.00 0.00 6.13
959 1021 0.402121 GGTTGGTTCTTGCTCCTCCT 59.598 55.000 0.00 0.00 0.00 3.69
965 1027 0.613292 TTCTTGCTCCTCCTCTCGCT 60.613 55.000 0.00 0.00 0.00 4.93
1178 1252 1.460305 ATGGGGAGGATGACGAGGG 60.460 63.158 0.00 0.00 0.00 4.30
1360 1437 0.390998 GAAGCTCGAGAAGGCAAGCT 60.391 55.000 18.75 0.22 46.66 3.74
1361 1438 0.390998 AAGCTCGAGAAGGCAAGCTC 60.391 55.000 18.75 0.00 44.03 4.09
1364 1441 2.125753 CGAGAAGGCAAGCTCGCT 60.126 61.111 0.00 0.00 45.97 4.93
1365 1442 2.164026 CGAGAAGGCAAGCTCGCTC 61.164 63.158 0.00 0.00 45.97 5.03
1366 1443 2.125753 AGAAGGCAAGCTCGCTCG 60.126 61.111 0.00 0.00 0.00 5.03
1367 1444 3.858989 GAAGGCAAGCTCGCTCGC 61.859 66.667 0.00 0.00 0.00 5.03
1368 1445 4.385405 AAGGCAAGCTCGCTCGCT 62.385 61.111 0.00 0.00 43.31 4.93
1369 1446 4.810661 AGGCAAGCTCGCTCGCTC 62.811 66.667 0.00 0.00 39.86 5.03
1381 1458 3.388296 CTCGCTCGCTCGCTCTTGA 62.388 63.158 0.00 0.00 0.00 3.02
1445 1550 0.103937 CAATGGCGGGTTGTTGTTGT 59.896 50.000 0.00 0.00 0.00 3.32
1446 1551 0.827368 AATGGCGGGTTGTTGTTGTT 59.173 45.000 0.00 0.00 0.00 2.83
1447 1552 0.103937 ATGGCGGGTTGTTGTTGTTG 59.896 50.000 0.00 0.00 0.00 3.33
1601 1769 4.286320 ATCATCGTCCTCCGCCGC 62.286 66.667 0.00 0.00 36.19 6.53
1781 1949 2.686235 TGCATTGCATTGCCTTGTTAC 58.314 42.857 26.06 2.17 42.06 2.50
1810 1983 1.406751 CCACGGCATCCATCACACTAA 60.407 52.381 0.00 0.00 0.00 2.24
1831 2013 7.919091 CACTAACTGATTGATGAATTTGGATGG 59.081 37.037 0.00 0.00 0.00 3.51
1988 2174 1.404986 CCTCGCCAACGTATTCTCCAA 60.405 52.381 0.00 0.00 41.18 3.53
2406 2592 1.171308 CCGACTACTTCTCCACGGAA 58.829 55.000 0.00 0.00 42.40 4.30
2481 2667 1.741770 CGCCAAGTTCCGGGAAGAG 60.742 63.158 10.35 2.96 0.00 2.85
2651 2837 4.789075 GACCGTTAGCGAGCGCCA 62.789 66.667 11.66 0.00 43.17 5.69
2655 2841 3.542742 GTTAGCGAGCGCCACGAC 61.543 66.667 24.51 16.30 43.17 4.34
2661 2847 3.764049 GAGCGCCACGACAACGAC 61.764 66.667 2.29 0.00 42.66 4.34
2766 2958 2.766400 CGACCACCTCGCTCTCTCC 61.766 68.421 0.00 0.00 35.06 3.71
3091 3289 2.961741 AGTCACACGCTCATCATCCTAT 59.038 45.455 0.00 0.00 0.00 2.57
3099 3312 4.284490 ACGCTCATCATCCTATACACCAAT 59.716 41.667 0.00 0.00 0.00 3.16
3100 3313 5.221722 ACGCTCATCATCCTATACACCAATT 60.222 40.000 0.00 0.00 0.00 2.32
3102 3315 6.205464 CGCTCATCATCCTATACACCAATTTT 59.795 38.462 0.00 0.00 0.00 1.82
3160 3380 1.651138 GACGAGCTGTCTCATTTGTCG 59.349 52.381 0.00 0.00 44.58 4.35
3169 3392 4.133820 TGTCTCATTTGTCGTGGTTTCAT 58.866 39.130 0.00 0.00 0.00 2.57
3170 3393 4.213270 TGTCTCATTTGTCGTGGTTTCATC 59.787 41.667 0.00 0.00 0.00 2.92
3171 3394 4.213270 GTCTCATTTGTCGTGGTTTCATCA 59.787 41.667 0.00 0.00 0.00 3.07
3220 3443 1.153549 CTACTCAGGGCCGTTGCTC 60.154 63.158 0.00 0.00 38.71 4.26
3332 3555 1.514228 CGATCGACCACCTCACACG 60.514 63.158 10.26 0.00 0.00 4.49
3349 3572 0.466963 ACGATGAGATGCATGCCTCA 59.533 50.000 23.37 23.37 42.78 3.86
3455 3678 0.602562 GCAGCACTGAGACTGAGACT 59.397 55.000 10.57 0.00 35.90 3.24
3456 3679 1.669502 GCAGCACTGAGACTGAGACTG 60.670 57.143 10.57 10.64 35.90 3.51
3457 3680 1.885233 CAGCACTGAGACTGAGACTGA 59.115 52.381 9.79 0.00 35.90 3.41
3458 3681 2.095110 CAGCACTGAGACTGAGACTGAG 60.095 54.545 9.79 0.00 35.90 3.35
3459 3682 2.158559 GCACTGAGACTGAGACTGAGA 58.841 52.381 5.40 0.00 0.00 3.27
3460 3683 2.095263 GCACTGAGACTGAGACTGAGAC 60.095 54.545 5.40 0.00 0.00 3.36
3475 3698 2.680352 GACCGAGGGAGAGGCACA 60.680 66.667 0.00 0.00 0.00 4.57
3506 3729 0.821517 CACACATGCTAGACCCCGTA 59.178 55.000 0.00 0.00 0.00 4.02
3563 3786 3.096489 GGCAATTGAACTGTTTGCTGA 57.904 42.857 10.34 0.00 43.98 4.26
3679 3902 0.174845 TATGCACTGTAGCGTCCACC 59.825 55.000 0.00 0.00 37.31 4.61
3703 3926 1.690633 TCACCTCCCATCTCCTGCC 60.691 63.158 0.00 0.00 0.00 4.85
3713 3936 2.091994 CCATCTCCTGCCTTCTTCCATT 60.092 50.000 0.00 0.00 0.00 3.16
3714 3937 3.212685 CATCTCCTGCCTTCTTCCATTC 58.787 50.000 0.00 0.00 0.00 2.67
3715 3938 1.561542 TCTCCTGCCTTCTTCCATTCC 59.438 52.381 0.00 0.00 0.00 3.01
3716 3939 1.283029 CTCCTGCCTTCTTCCATTCCA 59.717 52.381 0.00 0.00 0.00 3.53
3717 3940 1.925255 TCCTGCCTTCTTCCATTCCAT 59.075 47.619 0.00 0.00 0.00 3.41
3718 3941 2.092212 TCCTGCCTTCTTCCATTCCATC 60.092 50.000 0.00 0.00 0.00 3.51
3719 3942 1.945394 CTGCCTTCTTCCATTCCATCG 59.055 52.381 0.00 0.00 0.00 3.84
3720 3943 0.665298 GCCTTCTTCCATTCCATCGC 59.335 55.000 0.00 0.00 0.00 4.58
3721 3944 1.748591 GCCTTCTTCCATTCCATCGCT 60.749 52.381 0.00 0.00 0.00 4.93
3722 3945 2.485479 GCCTTCTTCCATTCCATCGCTA 60.485 50.000 0.00 0.00 0.00 4.26
3751 3974 2.690778 GCCGGTTGTGCCTTGCTAG 61.691 63.158 1.90 0.00 34.25 3.42
3761 3984 0.969149 GCCTTGCTAGTGCCCTTTTT 59.031 50.000 0.00 0.00 38.71 1.94
3762 3985 2.167662 GCCTTGCTAGTGCCCTTTTTA 58.832 47.619 0.00 0.00 38.71 1.52
3763 3986 2.760650 GCCTTGCTAGTGCCCTTTTTAT 59.239 45.455 0.00 0.00 38.71 1.40
3764 3987 3.195610 GCCTTGCTAGTGCCCTTTTTATT 59.804 43.478 0.00 0.00 38.71 1.40
3793 4018 2.481185 TGAAACGATAGAAAACACGCCC 59.519 45.455 0.00 0.00 41.38 6.13
3861 4086 2.291465 TGCTCACTTCATTGCTGTTGTC 59.709 45.455 0.00 0.00 0.00 3.18
3880 4105 1.207089 TCGGTAAGGCAGAACATCTGG 59.793 52.381 9.25 0.00 44.43 3.86
3891 4116 4.070716 CAGAACATCTGGCTCTGTTTTCT 58.929 43.478 0.00 0.00 40.71 2.52
3922 5187 8.744652 TCTTTTCTTTTCTTGTACACAATGGAA 58.255 29.630 0.00 0.00 35.02 3.53
3929 5194 5.547465 TCTTGTACACAATGGAAGTAGGTG 58.453 41.667 0.00 0.00 35.02 4.00
3930 5195 4.280436 TGTACACAATGGAAGTAGGTGG 57.720 45.455 0.00 0.00 33.91 4.61
3933 5198 4.553330 ACACAATGGAAGTAGGTGGTAG 57.447 45.455 0.00 0.00 33.91 3.18
3935 5200 5.088730 ACACAATGGAAGTAGGTGGTAGTA 58.911 41.667 0.00 0.00 33.91 1.82
3937 5202 5.187186 CACAATGGAAGTAGGTGGTAGTACT 59.813 44.000 0.00 0.00 0.00 2.73
3939 5204 3.973425 TGGAAGTAGGTGGTAGTACTCC 58.027 50.000 0.00 1.20 0.00 3.85
3940 5205 3.334581 TGGAAGTAGGTGGTAGTACTCCA 59.665 47.826 0.00 4.19 30.51 3.86
3941 5206 4.202706 TGGAAGTAGGTGGTAGTACTCCAA 60.203 45.833 13.53 0.00 36.68 3.53
4041 5925 6.513230 GCTCGGTATAATCAACAATCATGCAA 60.513 38.462 0.00 0.00 0.00 4.08
4055 5939 8.121305 ACAATCATGCAATAAACCAAAGACTA 57.879 30.769 0.00 0.00 0.00 2.59
4078 5962 8.951243 ACTAGATCTAGCTTTCAAATTTGGTTC 58.049 33.333 26.50 5.62 36.66 3.62
4095 5979 8.925161 ATTTGGTTCACCATAATTTGTTATCG 57.075 30.769 0.00 0.00 46.97 2.92
4096 5980 7.689446 TTGGTTCACCATAATTTGTTATCGA 57.311 32.000 0.00 0.00 46.97 3.59
4097 5981 7.689446 TGGTTCACCATAATTTGTTATCGAA 57.311 32.000 0.00 0.00 42.01 3.71
4098 5982 8.112016 TGGTTCACCATAATTTGTTATCGAAA 57.888 30.769 0.00 0.00 42.01 3.46
4099 5983 8.577296 TGGTTCACCATAATTTGTTATCGAAAA 58.423 29.630 0.00 0.00 42.01 2.29
4100 5984 9.413048 GGTTCACCATAATTTGTTATCGAAAAA 57.587 29.630 0.00 0.00 35.64 1.94
4102 5986 9.632807 TTCACCATAATTTGTTATCGAAAAAGG 57.367 29.630 0.00 0.00 0.00 3.11
4103 5987 7.757624 TCACCATAATTTGTTATCGAAAAAGGC 59.242 33.333 0.00 0.00 0.00 4.35
4104 5988 7.759433 CACCATAATTTGTTATCGAAAAAGGCT 59.241 33.333 0.00 0.00 0.00 4.58
4105 5989 8.311109 ACCATAATTTGTTATCGAAAAAGGCTT 58.689 29.630 0.00 0.00 0.00 4.35
4106 5990 9.150348 CCATAATTTGTTATCGAAAAAGGCTTT 57.850 29.630 6.68 6.68 0.00 3.51
4119 6003 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
4120 6004 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
4121 6005 0.586802 GCTTTCGCCCCGCTTTATAG 59.413 55.000 0.00 0.00 0.00 1.31
4122 6006 1.808891 GCTTTCGCCCCGCTTTATAGA 60.809 52.381 0.00 0.00 0.00 1.98
4123 6007 2.767505 CTTTCGCCCCGCTTTATAGAT 58.232 47.619 0.00 0.00 0.00 1.98
4124 6008 3.863400 GCTTTCGCCCCGCTTTATAGATA 60.863 47.826 0.00 0.00 0.00 1.98
4125 6009 4.312443 CTTTCGCCCCGCTTTATAGATAA 58.688 43.478 0.00 0.00 0.00 1.75
4126 6010 4.339872 TTCGCCCCGCTTTATAGATAAA 57.660 40.909 0.00 0.00 0.00 1.40
4137 6021 6.371809 CTTTATAGATAAAGCAAACCGCCA 57.628 37.500 8.66 0.00 41.69 5.69
4138 6022 6.371809 TTTATAGATAAAGCAAACCGCCAG 57.628 37.500 0.00 0.00 44.04 4.85
4139 6023 2.489938 AGATAAAGCAAACCGCCAGA 57.510 45.000 0.00 0.00 44.04 3.86
4140 6024 2.359900 AGATAAAGCAAACCGCCAGAG 58.640 47.619 0.00 0.00 44.04 3.35
4141 6025 2.027192 AGATAAAGCAAACCGCCAGAGA 60.027 45.455 0.00 0.00 44.04 3.10
4142 6026 1.808411 TAAAGCAAACCGCCAGAGAG 58.192 50.000 0.00 0.00 44.04 3.20
4143 6027 1.518903 AAAGCAAACCGCCAGAGAGC 61.519 55.000 0.00 0.00 44.04 4.09
4144 6028 2.669569 GCAAACCGCCAGAGAGCA 60.670 61.111 0.00 0.00 32.94 4.26
4145 6029 2.970974 GCAAACCGCCAGAGAGCAC 61.971 63.158 0.00 0.00 32.94 4.40
4146 6030 1.597854 CAAACCGCCAGAGAGCACA 60.598 57.895 0.00 0.00 0.00 4.57
4147 6031 1.598130 AAACCGCCAGAGAGCACAC 60.598 57.895 0.00 0.00 0.00 3.82
4148 6032 2.324014 AAACCGCCAGAGAGCACACA 62.324 55.000 0.00 0.00 0.00 3.72
4149 6033 2.116983 AACCGCCAGAGAGCACACAT 62.117 55.000 0.00 0.00 0.00 3.21
4150 6034 1.257750 ACCGCCAGAGAGCACACATA 61.258 55.000 0.00 0.00 0.00 2.29
4151 6035 0.807667 CCGCCAGAGAGCACACATAC 60.808 60.000 0.00 0.00 0.00 2.39
4152 6036 0.108662 CGCCAGAGAGCACACATACA 60.109 55.000 0.00 0.00 0.00 2.29
4153 6037 1.649664 GCCAGAGAGCACACATACAG 58.350 55.000 0.00 0.00 0.00 2.74
4154 6038 1.205655 GCCAGAGAGCACACATACAGA 59.794 52.381 0.00 0.00 0.00 3.41
4155 6039 2.354103 GCCAGAGAGCACACATACAGAA 60.354 50.000 0.00 0.00 0.00 3.02
4156 6040 3.681034 GCCAGAGAGCACACATACAGAAT 60.681 47.826 0.00 0.00 0.00 2.40
4157 6041 4.118410 CCAGAGAGCACACATACAGAATC 58.882 47.826 0.00 0.00 0.00 2.52
4158 6042 4.382362 CCAGAGAGCACACATACAGAATCA 60.382 45.833 0.00 0.00 0.00 2.57
4159 6043 5.173664 CAGAGAGCACACATACAGAATCAA 58.826 41.667 0.00 0.00 0.00 2.57
4160 6044 5.291371 CAGAGAGCACACATACAGAATCAAG 59.709 44.000 0.00 0.00 0.00 3.02
4161 6045 5.046735 AGAGAGCACACATACAGAATCAAGT 60.047 40.000 0.00 0.00 0.00 3.16
4162 6046 5.174395 AGAGCACACATACAGAATCAAGTC 58.826 41.667 0.00 0.00 0.00 3.01
4163 6047 4.256920 AGCACACATACAGAATCAAGTCC 58.743 43.478 0.00 0.00 0.00 3.85
4164 6048 4.002982 GCACACATACAGAATCAAGTCCA 58.997 43.478 0.00 0.00 0.00 4.02
4165 6049 4.142816 GCACACATACAGAATCAAGTCCAC 60.143 45.833 0.00 0.00 0.00 4.02
4166 6050 4.996758 CACACATACAGAATCAAGTCCACA 59.003 41.667 0.00 0.00 0.00 4.17
4167 6051 5.469760 CACACATACAGAATCAAGTCCACAA 59.530 40.000 0.00 0.00 0.00 3.33
4168 6052 6.017192 CACACATACAGAATCAAGTCCACAAA 60.017 38.462 0.00 0.00 0.00 2.83
4169 6053 6.017109 ACACATACAGAATCAAGTCCACAAAC 60.017 38.462 0.00 0.00 0.00 2.93
4170 6054 6.017192 CACATACAGAATCAAGTCCACAAACA 60.017 38.462 0.00 0.00 0.00 2.83
4171 6055 4.900635 ACAGAATCAAGTCCACAAACAC 57.099 40.909 0.00 0.00 0.00 3.32
4172 6056 3.312421 ACAGAATCAAGTCCACAAACACG 59.688 43.478 0.00 0.00 0.00 4.49
4173 6057 2.290641 AGAATCAAGTCCACAAACACGC 59.709 45.455 0.00 0.00 0.00 5.34
4174 6058 1.674359 ATCAAGTCCACAAACACGCA 58.326 45.000 0.00 0.00 0.00 5.24
4175 6059 0.730265 TCAAGTCCACAAACACGCAC 59.270 50.000 0.00 0.00 0.00 5.34
4176 6060 0.449786 CAAGTCCACAAACACGCACA 59.550 50.000 0.00 0.00 0.00 4.57
4177 6061 0.450184 AAGTCCACAAACACGCACAC 59.550 50.000 0.00 0.00 0.00 3.82
4178 6062 0.675208 AGTCCACAAACACGCACACA 60.675 50.000 0.00 0.00 0.00 3.72
4179 6063 0.522495 GTCCACAAACACGCACACAC 60.522 55.000 0.00 0.00 0.00 3.82
4180 6064 1.226547 CCACAAACACGCACACACC 60.227 57.895 0.00 0.00 0.00 4.16
4181 6065 1.226547 CACAAACACGCACACACCC 60.227 57.895 0.00 0.00 0.00 4.61
4182 6066 1.675972 ACAAACACGCACACACCCA 60.676 52.632 0.00 0.00 0.00 4.51
4183 6067 1.244697 ACAAACACGCACACACCCAA 61.245 50.000 0.00 0.00 0.00 4.12
4184 6068 0.525242 CAAACACGCACACACCCAAG 60.525 55.000 0.00 0.00 0.00 3.61
4185 6069 0.963355 AAACACGCACACACCCAAGT 60.963 50.000 0.00 0.00 0.00 3.16
4186 6070 1.373590 AACACGCACACACCCAAGTC 61.374 55.000 0.00 0.00 0.00 3.01
4187 6071 1.523711 CACGCACACACCCAAGTCT 60.524 57.895 0.00 0.00 0.00 3.24
4188 6072 1.227556 ACGCACACACCCAAGTCTC 60.228 57.895 0.00 0.00 0.00 3.36
4189 6073 1.227527 CGCACACACCCAAGTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
4190 6074 1.498865 CGCACACACCCAAGTCTCAC 61.499 60.000 0.00 0.00 0.00 3.51
4191 6075 1.498865 GCACACACCCAAGTCTCACG 61.499 60.000 0.00 0.00 0.00 4.35
4192 6076 0.104120 CACACACCCAAGTCTCACGA 59.896 55.000 0.00 0.00 0.00 4.35
4193 6077 1.048601 ACACACCCAAGTCTCACGAT 58.951 50.000 0.00 0.00 0.00 3.73
4194 6078 1.000955 ACACACCCAAGTCTCACGATC 59.999 52.381 0.00 0.00 0.00 3.69
4195 6079 1.000843 CACACCCAAGTCTCACGATCA 59.999 52.381 0.00 0.00 0.00 2.92
4196 6080 1.691976 ACACCCAAGTCTCACGATCAA 59.308 47.619 0.00 0.00 0.00 2.57
4197 6081 2.289072 ACACCCAAGTCTCACGATCAAG 60.289 50.000 0.00 0.00 0.00 3.02
4198 6082 1.971357 ACCCAAGTCTCACGATCAAGT 59.029 47.619 0.00 0.00 0.00 3.16
4199 6083 3.056821 CACCCAAGTCTCACGATCAAGTA 60.057 47.826 0.00 0.00 0.00 2.24
4200 6084 3.056749 ACCCAAGTCTCACGATCAAGTAC 60.057 47.826 0.00 0.00 0.00 2.73
4201 6085 3.056821 CCCAAGTCTCACGATCAAGTACA 60.057 47.826 0.00 0.00 0.00 2.90
4202 6086 4.556233 CCAAGTCTCACGATCAAGTACAA 58.444 43.478 0.00 0.00 0.00 2.41
4203 6087 4.988540 CCAAGTCTCACGATCAAGTACAAA 59.011 41.667 0.00 0.00 0.00 2.83
4204 6088 5.119279 CCAAGTCTCACGATCAAGTACAAAG 59.881 44.000 0.00 0.00 0.00 2.77
4205 6089 4.810790 AGTCTCACGATCAAGTACAAAGG 58.189 43.478 0.00 0.00 0.00 3.11
4206 6090 4.281182 AGTCTCACGATCAAGTACAAAGGT 59.719 41.667 0.00 0.00 0.00 3.50
4207 6091 4.989168 GTCTCACGATCAAGTACAAAGGTT 59.011 41.667 0.00 0.00 0.00 3.50
4208 6092 5.118817 GTCTCACGATCAAGTACAAAGGTTC 59.881 44.000 0.00 0.00 0.00 3.62
4209 6093 5.010719 TCTCACGATCAAGTACAAAGGTTCT 59.989 40.000 0.00 0.00 0.00 3.01
4210 6094 4.988540 TCACGATCAAGTACAAAGGTTCTG 59.011 41.667 0.00 0.00 0.00 3.02
4211 6095 3.746492 ACGATCAAGTACAAAGGTTCTGC 59.254 43.478 0.00 0.00 0.00 4.26
4212 6096 3.997021 CGATCAAGTACAAAGGTTCTGCT 59.003 43.478 0.00 0.00 0.00 4.24
4213 6097 4.143030 CGATCAAGTACAAAGGTTCTGCTG 60.143 45.833 0.00 0.00 0.00 4.41
4214 6098 4.415881 TCAAGTACAAAGGTTCTGCTGA 57.584 40.909 0.00 0.00 0.00 4.26
4215 6099 4.380531 TCAAGTACAAAGGTTCTGCTGAG 58.619 43.478 0.00 0.00 0.00 3.35
4216 6100 3.409026 AGTACAAAGGTTCTGCTGAGG 57.591 47.619 0.00 0.00 0.00 3.86
4217 6101 2.039084 AGTACAAAGGTTCTGCTGAGGG 59.961 50.000 0.00 0.00 0.00 4.30
4218 6102 0.538287 ACAAAGGTTCTGCTGAGGGC 60.538 55.000 0.00 0.00 42.22 5.19
4228 6112 3.978272 CTGAGGGCACAGCTCAAC 58.022 61.111 0.00 0.00 0.00 3.18
4229 6113 1.071987 CTGAGGGCACAGCTCAACA 59.928 57.895 0.00 0.00 0.00 3.33
4230 6114 0.535780 CTGAGGGCACAGCTCAACAA 60.536 55.000 0.00 0.00 0.00 2.83
4231 6115 0.535780 TGAGGGCACAGCTCAACAAG 60.536 55.000 0.00 0.00 0.00 3.16
4243 6127 4.519540 GCTCAACAAGCCCAGAAATAAA 57.480 40.909 0.00 0.00 45.92 1.40
4244 6128 4.881920 GCTCAACAAGCCCAGAAATAAAA 58.118 39.130 0.00 0.00 45.92 1.52
4245 6129 5.296748 GCTCAACAAGCCCAGAAATAAAAA 58.703 37.500 0.00 0.00 45.92 1.94
4261 6145 0.661020 AAAAAGGACAGAACACGCCG 59.339 50.000 0.00 0.00 0.00 6.46
4262 6146 1.164041 AAAAGGACAGAACACGCCGG 61.164 55.000 0.00 0.00 0.00 6.13
4263 6147 2.035237 AAAGGACAGAACACGCCGGA 62.035 55.000 5.05 0.00 0.00 5.14
4264 6148 2.710724 AAGGACAGAACACGCCGGAC 62.711 60.000 5.05 0.00 0.00 4.79
4283 6167 2.112475 CGAAGATGTCGCCTAGTCTG 57.888 55.000 0.00 0.00 44.14 3.51
4284 6168 1.268794 CGAAGATGTCGCCTAGTCTGG 60.269 57.143 0.00 0.00 44.14 3.86
4292 6176 3.111939 CCTAGTCTGGCTCCGACG 58.888 66.667 0.00 0.00 36.53 5.12
4293 6177 2.482333 CCTAGTCTGGCTCCGACGG 61.482 68.421 7.84 7.84 36.53 4.79
4294 6178 1.451567 CTAGTCTGGCTCCGACGGA 60.452 63.158 17.28 17.28 36.53 4.69
4335 6219 4.382728 GCGAACGGCCAATGATTG 57.617 55.556 2.24 0.00 34.80 2.67
4345 6229 2.016961 CAATGATTGGAGGTCGGCG 58.983 57.895 0.00 0.00 0.00 6.46
4346 6230 0.461870 CAATGATTGGAGGTCGGCGA 60.462 55.000 4.99 4.99 0.00 5.54
4347 6231 0.469917 AATGATTGGAGGTCGGCGAT 59.530 50.000 14.79 0.00 0.00 4.58
4348 6232 0.250038 ATGATTGGAGGTCGGCGATG 60.250 55.000 14.79 0.00 0.00 3.84
4349 6233 1.326951 TGATTGGAGGTCGGCGATGA 61.327 55.000 14.79 0.00 0.00 2.92
4350 6234 0.179084 GATTGGAGGTCGGCGATGAA 60.179 55.000 14.79 2.10 0.00 2.57
4351 6235 0.179073 ATTGGAGGTCGGCGATGAAG 60.179 55.000 14.79 0.00 0.00 3.02
4352 6236 2.107141 GGAGGTCGGCGATGAAGG 59.893 66.667 14.79 0.00 0.00 3.46
4353 6237 2.586357 GAGGTCGGCGATGAAGGC 60.586 66.667 14.79 0.00 0.00 4.35
4354 6238 3.077556 AGGTCGGCGATGAAGGCT 61.078 61.111 14.79 0.00 34.19 4.58
4355 6239 2.892425 GGTCGGCGATGAAGGCTG 60.892 66.667 14.79 0.00 38.14 4.85
4356 6240 2.184322 GTCGGCGATGAAGGCTGA 59.816 61.111 14.79 0.00 43.19 4.26
4357 6241 1.880340 GTCGGCGATGAAGGCTGAG 60.880 63.158 14.79 0.00 45.79 3.35
4358 6242 2.052104 TCGGCGATGAAGGCTGAGA 61.052 57.895 4.99 0.00 40.69 3.27
4359 6243 1.068753 CGGCGATGAAGGCTGAGAT 59.931 57.895 0.00 0.00 39.13 2.75
4360 6244 1.220169 CGGCGATGAAGGCTGAGATG 61.220 60.000 0.00 0.00 39.13 2.90
4361 6245 0.883814 GGCGATGAAGGCTGAGATGG 60.884 60.000 0.00 0.00 0.00 3.51
4362 6246 1.505477 GCGATGAAGGCTGAGATGGC 61.505 60.000 0.00 0.00 0.00 4.40
4363 6247 1.220169 CGATGAAGGCTGAGATGGCG 61.220 60.000 0.00 0.00 37.59 5.69
4364 6248 0.179062 GATGAAGGCTGAGATGGCGT 60.179 55.000 0.00 0.00 37.59 5.68
4365 6249 0.179062 ATGAAGGCTGAGATGGCGTC 60.179 55.000 0.00 0.00 40.28 5.19
4366 6250 1.219124 GAAGGCTGAGATGGCGTCA 59.781 57.895 9.78 0.00 39.81 4.35
4367 6251 1.078848 AAGGCTGAGATGGCGTCAC 60.079 57.895 9.78 3.04 37.59 3.67
4368 6252 2.842394 AAGGCTGAGATGGCGTCACG 62.842 60.000 9.78 0.00 37.59 4.35
4369 6253 2.887568 GCTGAGATGGCGTCACGG 60.888 66.667 9.78 9.04 0.00 4.94
4370 6254 2.573869 CTGAGATGGCGTCACGGT 59.426 61.111 9.78 0.00 0.00 4.83
4371 6255 1.517257 CTGAGATGGCGTCACGGTC 60.517 63.158 9.78 0.00 0.00 4.79
4372 6256 2.202756 GAGATGGCGTCACGGTCC 60.203 66.667 9.78 0.00 0.00 4.46
4373 6257 2.994995 AGATGGCGTCACGGTCCA 60.995 61.111 9.78 0.00 0.00 4.02
4374 6258 2.509336 GATGGCGTCACGGTCCAG 60.509 66.667 0.00 0.00 32.78 3.86
4375 6259 4.082523 ATGGCGTCACGGTCCAGG 62.083 66.667 0.00 0.00 32.78 4.45
4386 6270 4.176752 GTCCAGGGGGCGGCTAAG 62.177 72.222 9.56 0.00 0.00 2.18
4398 6282 4.179579 GCTAAGCGGCCGCCAAAG 62.180 66.667 44.47 35.89 43.17 2.77
4399 6283 4.179579 CTAAGCGGCCGCCAAAGC 62.180 66.667 44.47 18.77 43.17 3.51
4400 6284 4.715523 TAAGCGGCCGCCAAAGCT 62.716 61.111 44.47 24.50 43.17 3.74
4407 6291 3.041701 CCGCCAAAGCTGCAAGAA 58.958 55.556 1.02 0.00 34.07 2.52
4408 6292 1.363443 CCGCCAAAGCTGCAAGAAA 59.637 52.632 1.02 0.00 34.07 2.52
4409 6293 0.940991 CCGCCAAAGCTGCAAGAAAC 60.941 55.000 1.02 0.00 34.07 2.78
4410 6294 0.940991 CGCCAAAGCTGCAAGAAACC 60.941 55.000 1.02 0.00 34.07 3.27
4411 6295 0.601046 GCCAAAGCTGCAAGAAACCC 60.601 55.000 1.02 0.00 34.07 4.11
4412 6296 0.318955 CCAAAGCTGCAAGAAACCCG 60.319 55.000 1.02 0.00 34.07 5.28
4413 6297 0.667993 CAAAGCTGCAAGAAACCCGA 59.332 50.000 1.02 0.00 34.07 5.14
4414 6298 0.954452 AAAGCTGCAAGAAACCCGAG 59.046 50.000 1.02 0.00 34.07 4.63
4415 6299 0.108585 AAGCTGCAAGAAACCCGAGA 59.891 50.000 1.02 0.00 34.07 4.04
4416 6300 0.321122 AGCTGCAAGAAACCCGAGAG 60.321 55.000 1.02 0.00 34.07 3.20
4417 6301 0.603975 GCTGCAAGAAACCCGAGAGT 60.604 55.000 0.00 0.00 34.07 3.24
4418 6302 1.884235 CTGCAAGAAACCCGAGAGTT 58.116 50.000 0.00 0.00 34.07 3.01
4419 6303 2.222027 CTGCAAGAAACCCGAGAGTTT 58.778 47.619 0.00 0.00 42.56 2.66
4420 6304 1.946768 TGCAAGAAACCCGAGAGTTTG 59.053 47.619 3.40 0.00 40.01 2.93
4421 6305 2.218603 GCAAGAAACCCGAGAGTTTGA 58.781 47.619 3.40 0.00 40.01 2.69
4422 6306 2.616842 GCAAGAAACCCGAGAGTTTGAA 59.383 45.455 3.40 0.00 40.01 2.69
4423 6307 3.304057 GCAAGAAACCCGAGAGTTTGAAG 60.304 47.826 3.40 0.00 40.01 3.02
4424 6308 4.127171 CAAGAAACCCGAGAGTTTGAAGA 58.873 43.478 3.40 0.00 40.01 2.87
4425 6309 3.996480 AGAAACCCGAGAGTTTGAAGAG 58.004 45.455 3.40 0.00 40.01 2.85
4426 6310 3.641906 AGAAACCCGAGAGTTTGAAGAGA 59.358 43.478 3.40 0.00 40.01 3.10
4427 6311 3.669251 AACCCGAGAGTTTGAAGAGAG 57.331 47.619 0.00 0.00 0.00 3.20
4428 6312 1.273886 ACCCGAGAGTTTGAAGAGAGC 59.726 52.381 0.00 0.00 0.00 4.09
4429 6313 1.623359 CCGAGAGTTTGAAGAGAGCG 58.377 55.000 0.00 0.00 0.00 5.03
4430 6314 1.068194 CCGAGAGTTTGAAGAGAGCGT 60.068 52.381 0.00 0.00 0.00 5.07
4431 6315 2.246789 CGAGAGTTTGAAGAGAGCGTC 58.753 52.381 0.00 0.00 0.00 5.19
4432 6316 2.350868 CGAGAGTTTGAAGAGAGCGTCA 60.351 50.000 0.00 0.00 0.00 4.35
4433 6317 3.241701 GAGAGTTTGAAGAGAGCGTCAG 58.758 50.000 0.00 0.00 34.09 3.51
4434 6318 2.625790 AGAGTTTGAAGAGAGCGTCAGT 59.374 45.455 0.00 0.00 34.09 3.41
4435 6319 3.821600 AGAGTTTGAAGAGAGCGTCAGTA 59.178 43.478 0.00 0.00 34.09 2.74
4436 6320 4.083003 AGAGTTTGAAGAGAGCGTCAGTAG 60.083 45.833 0.00 0.00 34.09 2.57
4437 6321 3.821600 AGTTTGAAGAGAGCGTCAGTAGA 59.178 43.478 0.00 0.00 34.09 2.59
4438 6322 3.833545 TTGAAGAGAGCGTCAGTAGAC 57.166 47.619 0.00 0.00 41.46 2.59
4439 6323 2.085320 TGAAGAGAGCGTCAGTAGACC 58.915 52.381 0.00 0.00 41.87 3.85
4440 6324 1.062880 GAAGAGAGCGTCAGTAGACCG 59.937 57.143 0.00 0.00 41.87 4.79
4441 6325 0.249676 AGAGAGCGTCAGTAGACCGA 59.750 55.000 0.00 0.00 41.87 4.69
4442 6326 0.374410 GAGAGCGTCAGTAGACCGAC 59.626 60.000 0.00 0.00 41.87 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.017357 CCATGTGATCACCATCTGTTAATCAG 60.017 42.308 22.85 1.94 44.85 2.90
30 31 3.396276 TGTTTGGGAGAAACATGGAGGTA 59.604 43.478 0.00 0.00 35.45 3.08
32 33 2.875296 TGTTTGGGAGAAACATGGAGG 58.125 47.619 0.00 0.00 35.45 4.30
33 34 4.501400 GGTTTGTTTGGGAGAAACATGGAG 60.501 45.833 0.00 0.00 41.83 3.86
34 35 3.386402 GGTTTGTTTGGGAGAAACATGGA 59.614 43.478 0.00 0.00 41.83 3.41
49 55 9.073475 TGATTAATTAAGTAGTGCTGGTTTGTT 57.927 29.630 3.94 0.00 0.00 2.83
83 93 2.367241 TGGCGCTGATGCTAGGTTAATA 59.633 45.455 7.64 0.00 36.97 0.98
99 109 1.265095 CCTGTTATGTGATGATGGCGC 59.735 52.381 0.00 0.00 0.00 6.53
108 122 5.889853 CACCCTACTACTACCTGTTATGTGA 59.110 44.000 0.00 0.00 0.00 3.58
121 135 6.325804 ACGGATTTAATTAGCACCCTACTACT 59.674 38.462 0.00 0.00 0.00 2.57
122 136 6.519382 ACGGATTTAATTAGCACCCTACTAC 58.481 40.000 0.00 0.00 0.00 2.73
153 167 4.168014 GTGCGCTCAAAATTGAATCATCA 58.832 39.130 9.73 0.00 36.64 3.07
207 221 2.364780 GCCCTACGTTGGCCTACCT 61.365 63.158 15.83 2.89 43.33 3.08
217 231 3.934579 CCGTTTGTATTTAAGCCCTACGT 59.065 43.478 0.00 0.00 0.00 3.57
225 239 6.689547 CGTGTACTAGCCGTTTGTATTTAAG 58.310 40.000 0.00 0.00 0.00 1.85
257 271 1.299976 CAGGGAAGTGTAGGTGGCC 59.700 63.158 0.00 0.00 0.00 5.36
354 368 5.836898 TGAGGTTACTGTAGGAAGTCAAAGA 59.163 40.000 0.00 0.00 0.00 2.52
437 452 8.916654 GTGTCTTACATCTACATGTATGCATAC 58.083 37.037 26.72 26.72 43.65 2.39
441 456 7.810282 CCTAGTGTCTTACATCTACATGTATGC 59.190 40.741 5.91 0.00 43.65 3.14
453 468 5.934625 CAGAAACAAGCCTAGTGTCTTACAT 59.065 40.000 0.00 0.00 31.24 2.29
454 469 5.297547 CAGAAACAAGCCTAGTGTCTTACA 58.702 41.667 0.00 0.00 31.24 2.41
455 470 4.691216 CCAGAAACAAGCCTAGTGTCTTAC 59.309 45.833 0.00 0.00 31.24 2.34
507 533 4.338400 GTGCAACAACCCCTCTTATATTCC 59.662 45.833 0.00 0.00 36.32 3.01
519 545 2.288763 CCATGGTTAAGTGCAACAACCC 60.289 50.000 17.96 4.86 40.96 4.11
538 564 2.918802 CCAAAAGCTGGGCTGCCA 60.919 61.111 22.05 5.83 42.17 4.92
580 609 3.128068 GGACATACGATTGTGTTTTCCCC 59.872 47.826 0.00 0.00 0.00 4.81
581 610 3.128068 GGGACATACGATTGTGTTTTCCC 59.872 47.826 9.47 9.47 0.00 3.97
582 611 4.007659 AGGGACATACGATTGTGTTTTCC 58.992 43.478 0.00 0.00 0.00 3.13
595 628 5.953571 AGATAAAAATGGGGAGGGACATAC 58.046 41.667 0.00 0.00 0.00 2.39
596 629 6.392842 AGAAGATAAAAATGGGGAGGGACATA 59.607 38.462 0.00 0.00 0.00 2.29
639 696 4.041567 CCCCCTTTTGCTTTAATTCCTTGT 59.958 41.667 0.00 0.00 0.00 3.16
674 731 2.863019 CTTCCTCCTCGCCCTCCTCA 62.863 65.000 0.00 0.00 0.00 3.86
682 739 0.744281 CTCCTCTTCTTCCTCCTCGC 59.256 60.000 0.00 0.00 0.00 5.03
739 799 0.854218 ATTACCACCACCACCACCAA 59.146 50.000 0.00 0.00 0.00 3.67
788 848 1.463674 CAAATCCAAAGCGGCTACCT 58.536 50.000 1.35 0.00 33.14 3.08
829 891 0.906756 CCTCTGCCTCCTCTCCACAA 60.907 60.000 0.00 0.00 0.00 3.33
858 920 2.015726 TCCTCCTCCTCCTCCTCCC 61.016 68.421 0.00 0.00 0.00 4.30
859 921 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
860 922 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
896 958 3.130160 GGCTCCTCTGCTTTGGCG 61.130 66.667 0.00 0.00 42.25 5.69
959 1021 5.220854 CCAAGAAAGAAACAAAGAAGCGAGA 60.221 40.000 0.00 0.00 0.00 4.04
965 1027 5.446741 CGTCGACCAAGAAAGAAACAAAGAA 60.447 40.000 10.58 0.00 0.00 2.52
1107 1181 1.373497 CCTGCTCCATATCGACGCC 60.373 63.158 0.00 0.00 0.00 5.68
1111 1185 0.760567 ACAGGCCTGCTCCATATCGA 60.761 55.000 33.06 0.00 0.00 3.59
1136 1210 1.821332 CCAAGATCAAGCGCCTCCC 60.821 63.158 2.29 0.00 0.00 4.30
1169 1243 4.473520 CGCCCTTGCCCTCGTCAT 62.474 66.667 0.00 0.00 0.00 3.06
1362 1439 4.845705 AAGAGCGAGCGAGCGAGC 62.846 66.667 9.12 9.12 43.00 5.03
1363 1440 2.948648 CAAGAGCGAGCGAGCGAG 60.949 66.667 1.41 0.00 43.00 5.03
1364 1441 3.431725 TCAAGAGCGAGCGAGCGA 61.432 61.111 1.41 0.00 43.00 4.93
1365 1442 3.243892 GTCAAGAGCGAGCGAGCG 61.244 66.667 0.00 0.00 43.00 5.03
1366 1443 1.871789 GAGTCAAGAGCGAGCGAGC 60.872 63.158 0.00 0.00 37.41 5.03
1367 1444 1.226547 GGAGTCAAGAGCGAGCGAG 60.227 63.158 0.00 0.00 0.00 5.03
1368 1445 1.649390 GAGGAGTCAAGAGCGAGCGA 61.649 60.000 0.00 0.00 0.00 4.93
1369 1446 1.226547 GAGGAGTCAAGAGCGAGCG 60.227 63.158 0.00 0.00 0.00 5.03
1372 1449 1.649390 GCGAGAGGAGTCAAGAGCGA 61.649 60.000 0.00 0.00 0.00 4.93
1378 1455 1.888436 ATTGCCGCGAGAGGAGTCAA 61.888 55.000 8.23 0.00 0.00 3.18
1381 1458 0.103208 CTAATTGCCGCGAGAGGAGT 59.897 55.000 8.23 0.00 0.00 3.85
1445 1550 2.350895 CCGATCTGCACCCACCAA 59.649 61.111 0.00 0.00 0.00 3.67
1446 1551 3.716195 CCCGATCTGCACCCACCA 61.716 66.667 0.00 0.00 0.00 4.17
1762 1930 2.001872 GGTAACAAGGCAATGCAATGC 58.998 47.619 18.67 18.67 45.67 3.56
1781 1949 1.168407 GGATGCCGTGGTGATGATGG 61.168 60.000 0.00 0.00 0.00 3.51
1810 1983 5.394883 GCACCATCCAAATTCATCAATCAGT 60.395 40.000 0.00 0.00 0.00 3.41
1831 2013 2.223203 GCATGTAGCACTTGATCTGCAC 60.223 50.000 8.02 5.11 44.79 4.57
1980 2166 1.079127 CGTGGGCGAGTTGGAGAAT 60.079 57.895 0.00 0.00 41.33 2.40
2230 2416 4.047059 GACGGAGGCGTTGGACGA 62.047 66.667 4.46 0.00 46.05 4.20
2481 2667 0.037232 CGTTGTTCCTCCTCCTGGAC 60.037 60.000 0.00 0.00 37.46 4.02
2586 2772 3.239627 TTCCAGGGGGAGCGACTCT 62.240 63.158 6.78 0.00 46.01 3.24
2644 2830 3.764049 GTCGTTGTCGTGGCGCTC 61.764 66.667 7.64 0.00 38.33 5.03
2701 2887 3.714001 CTCCTCCTGGCAGCTGCA 61.714 66.667 37.63 23.01 44.36 4.41
3104 3317 9.072375 TGATCAGAATAACCATGTGTTTGTAAA 57.928 29.630 5.12 0.00 38.42 2.01
3124 3339 1.680207 TCGTCAGCTCCAGATGATCAG 59.320 52.381 0.09 0.00 42.80 2.90
3157 3377 2.096218 GTGCTTCTGATGAAACCACGAC 60.096 50.000 0.00 0.00 30.49 4.34
3160 3380 3.304928 CCTTGTGCTTCTGATGAAACCAC 60.305 47.826 0.00 0.00 36.19 4.16
3169 3392 1.434188 TCTTCCCCTTGTGCTTCTGA 58.566 50.000 0.00 0.00 0.00 3.27
3170 3393 2.089980 CATCTTCCCCTTGTGCTTCTG 58.910 52.381 0.00 0.00 0.00 3.02
3171 3394 1.988107 TCATCTTCCCCTTGTGCTTCT 59.012 47.619 0.00 0.00 0.00 2.85
3332 3555 2.351835 GCATTGAGGCATGCATCTCATC 60.352 50.000 30.15 14.78 42.90 2.92
3337 3560 0.314302 GAGGCATTGAGGCATGCATC 59.686 55.000 24.81 24.81 45.16 3.91
3356 3579 2.107552 TCAGGGGAATTAATTAGCCCGG 59.892 50.000 15.42 11.53 41.63 5.73
3455 3678 2.043852 GCCTCTCCCTCGGTCTCA 60.044 66.667 0.00 0.00 0.00 3.27
3456 3679 2.043852 TGCCTCTCCCTCGGTCTC 60.044 66.667 0.00 0.00 0.00 3.36
3457 3680 2.363147 GTGCCTCTCCCTCGGTCT 60.363 66.667 0.00 0.00 0.00 3.85
3458 3681 2.680352 TGTGCCTCTCCCTCGGTC 60.680 66.667 0.00 0.00 0.00 4.79
3459 3682 2.997897 GTGTGCCTCTCCCTCGGT 60.998 66.667 0.00 0.00 0.00 4.69
3460 3683 2.997315 TGTGTGCCTCTCCCTCGG 60.997 66.667 0.00 0.00 0.00 4.63
3475 3698 1.089112 CATGTGTGATCATGGCGTGT 58.911 50.000 6.60 0.00 40.77 4.49
3527 3750 2.328099 GCCGCAAGAGTCAAGGGTG 61.328 63.158 0.00 0.00 43.02 4.61
3528 3751 2.032681 GCCGCAAGAGTCAAGGGT 59.967 61.111 0.00 0.00 43.02 4.34
3679 3902 1.065854 GGAGATGGGAGGTGACAACAG 60.066 57.143 0.00 0.00 0.00 3.16
3703 3926 3.397482 CCTAGCGATGGAATGGAAGAAG 58.603 50.000 0.00 0.00 0.00 2.85
3770 3993 4.088648 GGCGTGTTTTCTATCGTTTCATG 58.911 43.478 0.00 0.00 0.00 3.07
3782 4005 0.109597 CATCAGCAGGGCGTGTTTTC 60.110 55.000 9.16 0.00 0.00 2.29
3793 4018 0.744874 CAATTCCCAGGCATCAGCAG 59.255 55.000 0.00 0.00 44.61 4.24
3861 4086 1.656652 CCAGATGTTCTGCCTTACCG 58.343 55.000 0.00 0.00 42.98 4.02
3880 4105 8.694975 AAAGAAAAGAAAAGAGAAAACAGAGC 57.305 30.769 0.00 0.00 0.00 4.09
3922 5187 4.291777 AGACTTGGAGTACTACCACCTACT 59.708 45.833 1.66 3.96 37.13 2.57
3929 5194 6.183360 CCAGGAATAAGACTTGGAGTACTACC 60.183 46.154 1.66 3.60 36.77 3.18
3930 5195 6.606395 TCCAGGAATAAGACTTGGAGTACTAC 59.394 42.308 0.00 0.00 38.32 2.73
3933 5198 5.422650 AGTCCAGGAATAAGACTTGGAGTAC 59.577 44.000 0.00 0.00 42.55 2.73
3935 5200 4.430441 AGTCCAGGAATAAGACTTGGAGT 58.570 43.478 0.00 0.00 42.53 3.85
3937 5202 7.622081 TGTAATAGTCCAGGAATAAGACTTGGA 59.378 37.037 0.00 0.00 41.09 3.53
3939 5204 8.258007 TGTGTAATAGTCCAGGAATAAGACTTG 58.742 37.037 0.00 0.00 41.09 3.16
3940 5205 8.375493 TGTGTAATAGTCCAGGAATAAGACTT 57.625 34.615 0.00 0.00 41.09 3.01
3941 5206 7.839705 TCTGTGTAATAGTCCAGGAATAAGACT 59.160 37.037 0.00 0.00 43.17 3.24
4041 5925 9.825109 GAAAGCTAGATCTAGTCTTTGGTTTAT 57.175 33.333 33.19 20.25 38.63 1.40
4055 5939 7.309438 GGTGAACCAAATTTGAAAGCTAGATCT 60.309 37.037 19.86 0.00 35.64 2.75
4078 5962 7.759433 AGCCTTTTTCGATAACAAATTATGGTG 59.241 33.333 0.00 0.00 30.77 4.17
4103 5987 2.234300 TCTATAAAGCGGGGCGAAAG 57.766 50.000 0.00 0.00 0.00 2.62
4104 5988 2.922740 ATCTATAAAGCGGGGCGAAA 57.077 45.000 0.00 0.00 0.00 3.46
4105 5989 4.312443 CTTTATCTATAAAGCGGGGCGAA 58.688 43.478 9.01 0.00 41.69 4.70
4106 5990 3.921677 CTTTATCTATAAAGCGGGGCGA 58.078 45.455 9.01 0.00 41.69 5.54
4115 5999 6.116806 TCTGGCGGTTTGCTTTATCTATAAA 58.883 36.000 0.00 0.00 45.43 1.40
4116 6000 5.676552 TCTGGCGGTTTGCTTTATCTATAA 58.323 37.500 0.00 0.00 45.43 0.98
4117 6001 5.069914 TCTCTGGCGGTTTGCTTTATCTATA 59.930 40.000 0.00 0.00 45.43 1.31
4118 6002 4.130118 CTCTGGCGGTTTGCTTTATCTAT 58.870 43.478 0.00 0.00 45.43 1.98
4119 6003 3.196901 TCTCTGGCGGTTTGCTTTATCTA 59.803 43.478 0.00 0.00 45.43 1.98
4120 6004 2.027192 TCTCTGGCGGTTTGCTTTATCT 60.027 45.455 0.00 0.00 45.43 1.98
4121 6005 2.352960 CTCTCTGGCGGTTTGCTTTATC 59.647 50.000 0.00 0.00 45.43 1.75
4122 6006 2.359900 CTCTCTGGCGGTTTGCTTTAT 58.640 47.619 0.00 0.00 45.43 1.40
4123 6007 1.808411 CTCTCTGGCGGTTTGCTTTA 58.192 50.000 0.00 0.00 45.43 1.85
4124 6008 1.518903 GCTCTCTGGCGGTTTGCTTT 61.519 55.000 0.00 0.00 45.43 3.51
4125 6009 1.968540 GCTCTCTGGCGGTTTGCTT 60.969 57.895 0.00 0.00 45.43 3.91
4126 6010 2.359230 GCTCTCTGGCGGTTTGCT 60.359 61.111 0.00 0.00 45.43 3.91
4127 6011 2.669569 TGCTCTCTGGCGGTTTGC 60.670 61.111 0.00 0.00 45.38 3.68
4128 6012 1.597854 TGTGCTCTCTGGCGGTTTG 60.598 57.895 0.00 0.00 34.52 2.93
4129 6013 1.598130 GTGTGCTCTCTGGCGGTTT 60.598 57.895 0.00 0.00 34.52 3.27
4130 6014 2.031163 GTGTGCTCTCTGGCGGTT 59.969 61.111 0.00 0.00 34.52 4.44
4131 6015 1.257750 TATGTGTGCTCTCTGGCGGT 61.258 55.000 0.00 0.00 34.52 5.68
4132 6016 0.807667 GTATGTGTGCTCTCTGGCGG 60.808 60.000 0.00 0.00 34.52 6.13
4133 6017 0.108662 TGTATGTGTGCTCTCTGGCG 60.109 55.000 0.00 0.00 34.52 5.69
4134 6018 1.205655 TCTGTATGTGTGCTCTCTGGC 59.794 52.381 0.00 0.00 0.00 4.85
4135 6019 3.599730 TTCTGTATGTGTGCTCTCTGG 57.400 47.619 0.00 0.00 0.00 3.86
4136 6020 4.752146 TGATTCTGTATGTGTGCTCTCTG 58.248 43.478 0.00 0.00 0.00 3.35
4137 6021 5.046735 ACTTGATTCTGTATGTGTGCTCTCT 60.047 40.000 0.00 0.00 0.00 3.10
4138 6022 5.174395 ACTTGATTCTGTATGTGTGCTCTC 58.826 41.667 0.00 0.00 0.00 3.20
4139 6023 5.157940 ACTTGATTCTGTATGTGTGCTCT 57.842 39.130 0.00 0.00 0.00 4.09
4140 6024 4.331168 GGACTTGATTCTGTATGTGTGCTC 59.669 45.833 0.00 0.00 0.00 4.26
4141 6025 4.256920 GGACTTGATTCTGTATGTGTGCT 58.743 43.478 0.00 0.00 0.00 4.40
4142 6026 4.002982 TGGACTTGATTCTGTATGTGTGC 58.997 43.478 0.00 0.00 0.00 4.57
4143 6027 4.996758 TGTGGACTTGATTCTGTATGTGTG 59.003 41.667 0.00 0.00 0.00 3.82
4144 6028 5.227569 TGTGGACTTGATTCTGTATGTGT 57.772 39.130 0.00 0.00 0.00 3.72
4145 6029 6.017192 TGTTTGTGGACTTGATTCTGTATGTG 60.017 38.462 0.00 0.00 0.00 3.21
4146 6030 6.017109 GTGTTTGTGGACTTGATTCTGTATGT 60.017 38.462 0.00 0.00 0.00 2.29
4147 6031 6.373779 GTGTTTGTGGACTTGATTCTGTATG 58.626 40.000 0.00 0.00 0.00 2.39
4148 6032 5.179368 CGTGTTTGTGGACTTGATTCTGTAT 59.821 40.000 0.00 0.00 0.00 2.29
4149 6033 4.509970 CGTGTTTGTGGACTTGATTCTGTA 59.490 41.667 0.00 0.00 0.00 2.74
4150 6034 3.312421 CGTGTTTGTGGACTTGATTCTGT 59.688 43.478 0.00 0.00 0.00 3.41
4151 6035 3.849645 GCGTGTTTGTGGACTTGATTCTG 60.850 47.826 0.00 0.00 0.00 3.02
4152 6036 2.290641 GCGTGTTTGTGGACTTGATTCT 59.709 45.455 0.00 0.00 0.00 2.40
4153 6037 2.032799 TGCGTGTTTGTGGACTTGATTC 59.967 45.455 0.00 0.00 0.00 2.52
4154 6038 2.020720 TGCGTGTTTGTGGACTTGATT 58.979 42.857 0.00 0.00 0.00 2.57
4155 6039 1.333619 GTGCGTGTTTGTGGACTTGAT 59.666 47.619 0.00 0.00 0.00 2.57
4156 6040 0.730265 GTGCGTGTTTGTGGACTTGA 59.270 50.000 0.00 0.00 0.00 3.02
4157 6041 0.449786 TGTGCGTGTTTGTGGACTTG 59.550 50.000 0.00 0.00 0.00 3.16
4158 6042 0.450184 GTGTGCGTGTTTGTGGACTT 59.550 50.000 0.00 0.00 0.00 3.01
4159 6043 0.675208 TGTGTGCGTGTTTGTGGACT 60.675 50.000 0.00 0.00 0.00 3.85
4160 6044 0.522495 GTGTGTGCGTGTTTGTGGAC 60.522 55.000 0.00 0.00 0.00 4.02
4161 6045 1.649390 GGTGTGTGCGTGTTTGTGGA 61.649 55.000 0.00 0.00 0.00 4.02
4162 6046 1.226547 GGTGTGTGCGTGTTTGTGG 60.227 57.895 0.00 0.00 0.00 4.17
4163 6047 1.226547 GGGTGTGTGCGTGTTTGTG 60.227 57.895 0.00 0.00 0.00 3.33
4164 6048 1.244697 TTGGGTGTGTGCGTGTTTGT 61.245 50.000 0.00 0.00 0.00 2.83
4165 6049 0.525242 CTTGGGTGTGTGCGTGTTTG 60.525 55.000 0.00 0.00 0.00 2.93
4166 6050 0.963355 ACTTGGGTGTGTGCGTGTTT 60.963 50.000 0.00 0.00 0.00 2.83
4167 6051 1.373590 GACTTGGGTGTGTGCGTGTT 61.374 55.000 0.00 0.00 0.00 3.32
4168 6052 1.817941 GACTTGGGTGTGTGCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
4169 6053 1.498865 GAGACTTGGGTGTGTGCGTG 61.499 60.000 0.00 0.00 0.00 5.34
4170 6054 1.227556 GAGACTTGGGTGTGTGCGT 60.228 57.895 0.00 0.00 0.00 5.24
4171 6055 1.227527 TGAGACTTGGGTGTGTGCG 60.228 57.895 0.00 0.00 0.00 5.34
4172 6056 1.498865 CGTGAGACTTGGGTGTGTGC 61.499 60.000 0.00 0.00 0.00 4.57
4173 6057 0.104120 TCGTGAGACTTGGGTGTGTG 59.896 55.000 0.00 0.00 33.31 3.82
4174 6058 1.000955 GATCGTGAGACTTGGGTGTGT 59.999 52.381 0.00 0.00 46.97 3.72
4175 6059 1.000843 TGATCGTGAGACTTGGGTGTG 59.999 52.381 0.00 0.00 46.97 3.82
4176 6060 1.338107 TGATCGTGAGACTTGGGTGT 58.662 50.000 0.00 0.00 46.97 4.16
4177 6061 2.289072 ACTTGATCGTGAGACTTGGGTG 60.289 50.000 0.00 0.00 46.97 4.61
4178 6062 1.971357 ACTTGATCGTGAGACTTGGGT 59.029 47.619 0.00 0.00 46.97 4.51
4179 6063 2.751166 ACTTGATCGTGAGACTTGGG 57.249 50.000 0.00 0.00 46.97 4.12
4180 6064 4.174411 TGTACTTGATCGTGAGACTTGG 57.826 45.455 0.00 0.00 46.97 3.61
4181 6065 5.119279 CCTTTGTACTTGATCGTGAGACTTG 59.881 44.000 0.00 0.00 46.97 3.16
4182 6066 5.221461 ACCTTTGTACTTGATCGTGAGACTT 60.221 40.000 0.00 0.00 46.97 3.01
4183 6067 4.281182 ACCTTTGTACTTGATCGTGAGACT 59.719 41.667 0.00 0.00 46.97 3.24
4184 6068 4.557205 ACCTTTGTACTTGATCGTGAGAC 58.443 43.478 0.00 0.00 46.97 3.36
4186 6070 5.119279 CAGAACCTTTGTACTTGATCGTGAG 59.881 44.000 0.00 0.00 0.00 3.51
4187 6071 4.988540 CAGAACCTTTGTACTTGATCGTGA 59.011 41.667 0.00 0.00 0.00 4.35
4188 6072 4.377431 GCAGAACCTTTGTACTTGATCGTG 60.377 45.833 0.00 0.00 0.00 4.35
4189 6073 3.746492 GCAGAACCTTTGTACTTGATCGT 59.254 43.478 0.00 0.00 0.00 3.73
4190 6074 3.997021 AGCAGAACCTTTGTACTTGATCG 59.003 43.478 0.00 0.00 0.00 3.69
4191 6075 4.997395 TCAGCAGAACCTTTGTACTTGATC 59.003 41.667 0.00 0.00 0.00 2.92
4192 6076 4.973168 TCAGCAGAACCTTTGTACTTGAT 58.027 39.130 0.00 0.00 0.00 2.57
4193 6077 4.380531 CTCAGCAGAACCTTTGTACTTGA 58.619 43.478 0.00 0.00 0.00 3.02
4194 6078 3.499918 CCTCAGCAGAACCTTTGTACTTG 59.500 47.826 0.00 0.00 0.00 3.16
4195 6079 3.496870 CCCTCAGCAGAACCTTTGTACTT 60.497 47.826 0.00 0.00 0.00 2.24
4196 6080 2.039084 CCCTCAGCAGAACCTTTGTACT 59.961 50.000 0.00 0.00 0.00 2.73
4197 6081 2.427506 CCCTCAGCAGAACCTTTGTAC 58.572 52.381 0.00 0.00 0.00 2.90
4198 6082 1.271379 GCCCTCAGCAGAACCTTTGTA 60.271 52.381 0.00 0.00 42.97 2.41
4199 6083 0.538287 GCCCTCAGCAGAACCTTTGT 60.538 55.000 0.00 0.00 42.97 2.83
4200 6084 2.261215 GCCCTCAGCAGAACCTTTG 58.739 57.895 0.00 0.00 42.97 2.77
4201 6085 4.830573 GCCCTCAGCAGAACCTTT 57.169 55.556 0.00 0.00 42.97 3.11
4211 6095 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
4212 6096 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
4213 6097 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
4214 6098 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
4242 6126 0.661020 CGGCGTGTTCTGTCCTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
4243 6127 1.164041 CCGGCGTGTTCTGTCCTTTT 61.164 55.000 6.01 0.00 0.00 2.27
4244 6128 1.597027 CCGGCGTGTTCTGTCCTTT 60.597 57.895 6.01 0.00 0.00 3.11
4245 6129 2.030562 CCGGCGTGTTCTGTCCTT 59.969 61.111 6.01 0.00 0.00 3.36
4246 6130 2.915659 TCCGGCGTGTTCTGTCCT 60.916 61.111 6.01 0.00 0.00 3.85
4247 6131 2.737376 GTCCGGCGTGTTCTGTCC 60.737 66.667 6.01 0.00 0.00 4.02
4248 6132 3.103911 CGTCCGGCGTGTTCTGTC 61.104 66.667 6.01 0.00 35.54 3.51
4249 6133 3.141522 TTCGTCCGGCGTGTTCTGT 62.142 57.895 16.00 0.00 42.13 3.41
4250 6134 2.355363 TTCGTCCGGCGTGTTCTG 60.355 61.111 16.00 0.00 42.13 3.02
4251 6135 1.874345 ATCTTCGTCCGGCGTGTTCT 61.874 55.000 16.00 0.00 42.13 3.01
4252 6136 1.445582 ATCTTCGTCCGGCGTGTTC 60.446 57.895 16.00 0.00 42.13 3.18
4253 6137 1.736645 CATCTTCGTCCGGCGTGTT 60.737 57.895 16.00 5.45 42.13 3.32
4254 6138 2.126071 CATCTTCGTCCGGCGTGT 60.126 61.111 16.00 1.46 42.13 4.49
4255 6139 2.126071 ACATCTTCGTCCGGCGTG 60.126 61.111 16.00 10.41 42.13 5.34
4256 6140 2.181021 GACATCTTCGTCCGGCGT 59.819 61.111 16.00 0.00 42.13 5.68
4257 6141 2.949678 CGACATCTTCGTCCGGCG 60.950 66.667 11.37 11.37 43.24 6.46
4265 6149 1.537135 GCCAGACTAGGCGACATCTTC 60.537 57.143 0.00 0.00 46.12 2.87
4266 6150 0.461961 GCCAGACTAGGCGACATCTT 59.538 55.000 0.00 0.00 46.12 2.40
4267 6151 2.119886 GCCAGACTAGGCGACATCT 58.880 57.895 0.00 0.00 46.12 2.90
4268 6152 4.740235 GCCAGACTAGGCGACATC 57.260 61.111 0.00 0.00 46.12 3.06
4275 6159 2.482333 CCGTCGGAGCCAGACTAGG 61.482 68.421 4.91 0.00 36.53 3.02
4276 6160 1.440938 CTCCGTCGGAGCCAGACTAG 61.441 65.000 27.52 2.58 43.29 2.57
4277 6161 1.451567 CTCCGTCGGAGCCAGACTA 60.452 63.158 27.52 0.00 43.29 2.59
4278 6162 2.752238 CTCCGTCGGAGCCAGACT 60.752 66.667 27.52 0.00 43.29 3.24
4318 6202 1.226660 CCAATCATTGGCCGTTCGC 60.227 57.895 2.63 0.00 45.17 4.70
4327 6211 0.461870 TCGCCGACCTCCAATCATTG 60.462 55.000 0.00 0.00 0.00 2.82
4328 6212 0.469917 ATCGCCGACCTCCAATCATT 59.530 50.000 0.00 0.00 0.00 2.57
4329 6213 0.250038 CATCGCCGACCTCCAATCAT 60.250 55.000 0.00 0.00 0.00 2.45
4330 6214 1.143838 CATCGCCGACCTCCAATCA 59.856 57.895 0.00 0.00 0.00 2.57
4331 6215 0.179084 TTCATCGCCGACCTCCAATC 60.179 55.000 0.00 0.00 0.00 2.67
4332 6216 0.179073 CTTCATCGCCGACCTCCAAT 60.179 55.000 0.00 0.00 0.00 3.16
4333 6217 1.218047 CTTCATCGCCGACCTCCAA 59.782 57.895 0.00 0.00 0.00 3.53
4334 6218 2.721167 CCTTCATCGCCGACCTCCA 61.721 63.158 0.00 0.00 0.00 3.86
4335 6219 2.107141 CCTTCATCGCCGACCTCC 59.893 66.667 0.00 0.00 0.00 4.30
4336 6220 2.586357 GCCTTCATCGCCGACCTC 60.586 66.667 0.00 0.00 0.00 3.85
4337 6221 3.077556 AGCCTTCATCGCCGACCT 61.078 61.111 0.00 0.00 0.00 3.85
4338 6222 2.892425 CAGCCTTCATCGCCGACC 60.892 66.667 0.00 0.00 0.00 4.79
4339 6223 1.880340 CTCAGCCTTCATCGCCGAC 60.880 63.158 0.00 0.00 0.00 4.79
4340 6224 1.395045 ATCTCAGCCTTCATCGCCGA 61.395 55.000 0.00 0.00 0.00 5.54
4341 6225 1.068753 ATCTCAGCCTTCATCGCCG 59.931 57.895 0.00 0.00 0.00 6.46
4342 6226 0.883814 CCATCTCAGCCTTCATCGCC 60.884 60.000 0.00 0.00 0.00 5.54
4343 6227 1.505477 GCCATCTCAGCCTTCATCGC 61.505 60.000 0.00 0.00 0.00 4.58
4344 6228 1.220169 CGCCATCTCAGCCTTCATCG 61.220 60.000 0.00 0.00 0.00 3.84
4345 6229 0.179062 ACGCCATCTCAGCCTTCATC 60.179 55.000 0.00 0.00 0.00 2.92
4346 6230 0.179062 GACGCCATCTCAGCCTTCAT 60.179 55.000 0.00 0.00 0.00 2.57
4347 6231 1.219124 GACGCCATCTCAGCCTTCA 59.781 57.895 0.00 0.00 0.00 3.02
4348 6232 1.086634 GTGACGCCATCTCAGCCTTC 61.087 60.000 0.00 0.00 0.00 3.46
4349 6233 1.078848 GTGACGCCATCTCAGCCTT 60.079 57.895 0.00 0.00 0.00 4.35
4350 6234 2.581354 GTGACGCCATCTCAGCCT 59.419 61.111 0.00 0.00 0.00 4.58
4351 6235 2.887568 CGTGACGCCATCTCAGCC 60.888 66.667 0.00 0.00 0.00 4.85
4352 6236 2.887568 CCGTGACGCCATCTCAGC 60.888 66.667 0.00 0.00 0.00 4.26
4353 6237 1.517257 GACCGTGACGCCATCTCAG 60.517 63.158 0.00 0.00 0.00 3.35
4354 6238 2.571757 GACCGTGACGCCATCTCA 59.428 61.111 0.00 0.00 0.00 3.27
4355 6239 2.202756 GGACCGTGACGCCATCTC 60.203 66.667 0.00 0.00 0.00 2.75
4356 6240 2.994995 TGGACCGTGACGCCATCT 60.995 61.111 0.00 0.00 0.00 2.90
4357 6241 2.509336 CTGGACCGTGACGCCATC 60.509 66.667 4.85 0.00 0.00 3.51
4358 6242 4.082523 CCTGGACCGTGACGCCAT 62.083 66.667 4.85 0.00 0.00 4.40
4369 6253 4.176752 CTTAGCCGCCCCCTGGAC 62.177 72.222 0.00 0.00 0.00 4.02
4381 6265 4.179579 CTTTGGCGGCCGCTTAGC 62.180 66.667 45.23 30.71 41.60 3.09
4382 6266 4.179579 GCTTTGGCGGCCGCTTAG 62.180 66.667 45.23 36.03 41.60 2.18
4383 6267 4.715523 AGCTTTGGCGGCCGCTTA 62.716 61.111 45.23 32.62 44.37 3.09
4390 6274 0.940991 GTTTCTTGCAGCTTTGGCGG 60.941 55.000 0.00 0.00 44.37 6.13
4391 6275 0.940991 GGTTTCTTGCAGCTTTGGCG 60.941 55.000 0.00 0.00 44.37 5.69
4392 6276 0.601046 GGGTTTCTTGCAGCTTTGGC 60.601 55.000 0.00 0.00 39.06 4.52
4393 6277 0.318955 CGGGTTTCTTGCAGCTTTGG 60.319 55.000 0.00 0.00 0.00 3.28
4394 6278 0.667993 TCGGGTTTCTTGCAGCTTTG 59.332 50.000 0.00 0.00 0.00 2.77
4395 6279 0.954452 CTCGGGTTTCTTGCAGCTTT 59.046 50.000 0.00 0.00 0.00 3.51
4396 6280 0.108585 TCTCGGGTTTCTTGCAGCTT 59.891 50.000 0.00 0.00 0.00 3.74
4397 6281 0.321122 CTCTCGGGTTTCTTGCAGCT 60.321 55.000 0.00 0.00 0.00 4.24
4398 6282 0.603975 ACTCTCGGGTTTCTTGCAGC 60.604 55.000 0.00 0.00 0.00 5.25
4399 6283 1.884235 AACTCTCGGGTTTCTTGCAG 58.116 50.000 0.00 0.00 0.00 4.41
4400 6284 1.946768 CAAACTCTCGGGTTTCTTGCA 59.053 47.619 0.00 0.00 37.32 4.08
4401 6285 2.218603 TCAAACTCTCGGGTTTCTTGC 58.781 47.619 0.00 0.00 37.32 4.01
4402 6286 4.127171 TCTTCAAACTCTCGGGTTTCTTG 58.873 43.478 0.00 0.00 37.32 3.02
4403 6287 4.101119 TCTCTTCAAACTCTCGGGTTTCTT 59.899 41.667 0.00 0.00 37.32 2.52
4404 6288 3.641906 TCTCTTCAAACTCTCGGGTTTCT 59.358 43.478 0.00 0.00 37.32 2.52
4405 6289 3.991121 CTCTCTTCAAACTCTCGGGTTTC 59.009 47.826 0.00 0.00 37.32 2.78
4406 6290 3.804063 GCTCTCTTCAAACTCTCGGGTTT 60.804 47.826 0.00 0.00 39.62 3.27
4407 6291 2.289133 GCTCTCTTCAAACTCTCGGGTT 60.289 50.000 0.00 0.00 0.00 4.11
4408 6292 1.273886 GCTCTCTTCAAACTCTCGGGT 59.726 52.381 0.00 0.00 0.00 5.28
4409 6293 1.734047 CGCTCTCTTCAAACTCTCGGG 60.734 57.143 0.00 0.00 0.00 5.14
4410 6294 1.068194 ACGCTCTCTTCAAACTCTCGG 60.068 52.381 0.00 0.00 0.00 4.63
4411 6295 2.246789 GACGCTCTCTTCAAACTCTCG 58.753 52.381 0.00 0.00 0.00 4.04
4412 6296 3.241701 CTGACGCTCTCTTCAAACTCTC 58.758 50.000 0.00 0.00 0.00 3.20
4413 6297 2.625790 ACTGACGCTCTCTTCAAACTCT 59.374 45.455 0.00 0.00 0.00 3.24
4414 6298 3.019933 ACTGACGCTCTCTTCAAACTC 57.980 47.619 0.00 0.00 0.00 3.01
4415 6299 3.821600 TCTACTGACGCTCTCTTCAAACT 59.178 43.478 0.00 0.00 0.00 2.66
4416 6300 3.915569 GTCTACTGACGCTCTCTTCAAAC 59.084 47.826 0.00 0.00 33.15 2.93
4417 6301 3.057456 GGTCTACTGACGCTCTCTTCAAA 60.057 47.826 0.00 0.00 43.79 2.69
4418 6302 2.488545 GGTCTACTGACGCTCTCTTCAA 59.511 50.000 0.00 0.00 43.79 2.69
4419 6303 2.085320 GGTCTACTGACGCTCTCTTCA 58.915 52.381 0.00 0.00 43.79 3.02
4420 6304 1.062880 CGGTCTACTGACGCTCTCTTC 59.937 57.143 0.00 0.00 43.79 2.87
4421 6305 1.088306 CGGTCTACTGACGCTCTCTT 58.912 55.000 0.00 0.00 43.79 2.85
4422 6306 0.249676 TCGGTCTACTGACGCTCTCT 59.750 55.000 0.00 0.00 43.79 3.10
4423 6307 0.374410 GTCGGTCTACTGACGCTCTC 59.626 60.000 6.33 0.00 43.79 3.20
4424 6308 2.469058 GTCGGTCTACTGACGCTCT 58.531 57.895 6.33 0.00 43.79 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.