Multiple sequence alignment - TraesCS5B01G080900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G080900 chr5B 100.000 3435 0 0 310 3744 100709969 100713403 0.000000e+00 6344.0
1 TraesCS5B01G080900 chr5B 90.426 752 45 10 310 1035 96559785 96559035 0.000000e+00 965.0
2 TraesCS5B01G080900 chr5B 95.462 573 15 2 2484 3045 96555199 96554627 0.000000e+00 904.0
3 TraesCS5B01G080900 chr5B 96.082 485 15 1 1989 2469 96557237 96556753 0.000000e+00 787.0
4 TraesCS5B01G080900 chr5B 94.027 519 20 2 1444 1962 96557742 96557235 0.000000e+00 776.0
5 TraesCS5B01G080900 chr5B 92.079 303 15 5 1031 1331 96558063 96557768 5.780000e-113 418.0
6 TraesCS5B01G080900 chr5B 100.000 139 0 0 1 139 100709660 100709798 1.330000e-64 257.0
7 TraesCS5B01G080900 chr5B 93.525 139 8 1 1 139 96559942 96559805 4.900000e-49 206.0
8 TraesCS5B01G080900 chr5B 96.250 80 2 1 3158 3237 96554627 96554549 3.030000e-26 130.0
9 TraesCS5B01G080900 chr5D 91.896 728 56 1 1445 2169 91356578 91355851 0.000000e+00 1014.0
10 TraesCS5B01G080900 chr5D 86.073 876 73 26 483 1332 91357458 91356606 0.000000e+00 896.0
11 TraesCS5B01G080900 chr5D 92.870 547 33 4 2208 2748 91355839 91355293 0.000000e+00 789.0
12 TraesCS5B01G080900 chr5D 86.722 241 21 5 2752 2989 91355257 91355025 1.330000e-64 257.0
13 TraesCS5B01G080900 chr5D 96.053 76 2 1 3162 3237 91354959 91354885 5.080000e-24 122.0
14 TraesCS5B01G080900 chr1D 91.107 506 26 9 3242 3744 11536554 11537043 0.000000e+00 667.0
15 TraesCS5B01G080900 chr1D 98.261 115 2 0 1331 1445 70342629 70342515 6.340000e-48 202.0
16 TraesCS5B01G080900 chr7B 89.608 510 34 11 3242 3744 572597676 572598173 6.820000e-177 630.0
17 TraesCS5B01G080900 chr7B 98.214 112 1 1 1331 1442 254086359 254086469 1.060000e-45 195.0
18 TraesCS5B01G080900 chr7D 98.276 116 2 0 1331 1446 601491330 601491215 1.760000e-48 204.0
19 TraesCS5B01G080900 chr7D 92.105 38 3 0 1445 1482 34073556 34073593 2.000000e-03 54.7
20 TraesCS5B01G080900 chr7D 100.000 28 0 0 3016 3043 29643235 29643208 7.000000e-03 52.8
21 TraesCS5B01G080900 chr3D 98.261 115 2 0 1331 1445 89921835 89921721 6.340000e-48 202.0
22 TraesCS5B01G080900 chr3D 95.902 122 4 1 1331 1452 136261833 136261713 2.950000e-46 196.0
23 TraesCS5B01G080900 chr3D 93.333 120 7 1 3038 3157 549125223 549125105 3.840000e-40 176.0
24 TraesCS5B01G080900 chr3B 98.261 115 2 0 1331 1445 466282193 466282307 6.340000e-48 202.0
25 TraesCS5B01G080900 chr5A 97.436 117 2 1 1331 1447 591978187 591978072 8.200000e-47 198.0
26 TraesCS5B01G080900 chr5A 94.118 119 7 0 3041 3159 561976281 561976163 8.260000e-42 182.0
27 TraesCS5B01G080900 chr5A 93.548 62 3 1 3176 3237 85140020 85139960 1.430000e-14 91.6
28 TraesCS5B01G080900 chr2B 97.391 115 3 0 1331 1445 509994190 509994304 2.950000e-46 196.0
29 TraesCS5B01G080900 chr2B 92.000 125 8 2 3042 3165 723434349 723434226 1.380000e-39 174.0
30 TraesCS5B01G080900 chr2B 90.476 126 11 1 3035 3160 5486431 5486307 8.320000e-37 165.0
31 TraesCS5B01G080900 chr6D 97.391 115 2 1 1331 1445 387808761 387808648 1.060000e-45 195.0
32 TraesCS5B01G080900 chr6D 92.562 121 9 0 3040 3160 144280163 144280043 1.380000e-39 174.0
33 TraesCS5B01G080900 chr7A 94.915 118 6 0 3042 3159 1416111 1416228 6.390000e-43 185.0
34 TraesCS5B01G080900 chr2A 94.915 118 6 0 3042 3159 718227779 718227896 6.390000e-43 185.0
35 TraesCS5B01G080900 chr4A 92.437 119 9 0 3042 3160 38745360 38745242 1.790000e-38 171.0
36 TraesCS5B01G080900 chr4A 91.270 126 10 1 3042 3167 702148909 702148785 1.790000e-38 171.0
37 TraesCS5B01G080900 chr3A 88.889 45 5 0 3001 3045 588939022 588938978 5.220000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G080900 chr5B 100709660 100713403 3743 False 3300.5 6344 100.000000 1 3744 2 chr5B.!!$F1 3743
1 TraesCS5B01G080900 chr5B 96554549 96559942 5393 True 598.0 965 93.978714 1 3237 7 chr5B.!!$R1 3236
2 TraesCS5B01G080900 chr5D 91354885 91357458 2573 True 615.6 1014 90.722800 483 3237 5 chr5D.!!$R1 2754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 945 0.036875 CTCCTTTGTGTCCCACCTCC 59.963 60.0 0.0 0.0 32.73 4.30 F
912 946 0.401395 TCCTTTGTGTCCCACCTCCT 60.401 55.0 0.0 0.0 32.73 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2465 3507 0.755686 CAGCTCCTACATGGGACTCC 59.244 60.0 0.0 0.0 36.2 3.85 R
2767 5381 1.052124 ACAACGGGGAGGAGAACACA 61.052 55.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.358247 TTTGAGGACGCGGCCTTC 60.358 61.111 38.50 27.42 38.73 3.46
82 83 1.447838 GACGCGGCCTTCAATGAGA 60.448 57.895 12.47 0.00 0.00 3.27
87 88 1.745141 GCGGCCTTCAATGAGAGACAT 60.745 52.381 0.00 0.00 41.45 3.06
88 89 2.483714 GCGGCCTTCAATGAGAGACATA 60.484 50.000 0.00 0.00 38.38 2.29
92 93 3.563390 GCCTTCAATGAGAGACATAAGCC 59.437 47.826 0.00 0.00 38.38 4.35
99 100 2.166459 TGAGAGACATAAGCCTGTTCCG 59.834 50.000 0.00 0.00 0.00 4.30
345 346 2.748641 TAGGATGGCGAGGGATCCCC 62.749 65.000 28.11 17.38 45.90 4.81
390 391 0.526662 CGTAGCTTCTTGGACGAGGT 59.473 55.000 0.00 0.00 37.50 3.85
397 398 0.606604 TCTTGGACGAGGTAAGGTGC 59.393 55.000 0.00 0.00 0.00 5.01
537 555 5.520649 GGAAGGAGAAGCTACAATAGAAACG 59.479 44.000 0.00 0.00 0.00 3.60
545 563 9.216117 AGAAGCTACAATAGAAACGTAATTTGT 57.784 29.630 0.00 0.00 0.00 2.83
547 565 8.319143 AGCTACAATAGAAACGTAATTTGTGT 57.681 30.769 10.61 5.27 0.00 3.72
557 576 7.593644 AGAAACGTAATTTGTGTAATCTTTGCC 59.406 33.333 0.00 0.00 0.00 4.52
569 588 4.510038 AATCTTTGCCAGCTTACACTTG 57.490 40.909 0.00 0.00 0.00 3.16
615 645 4.627923 TGTGTTTTTACCGATTACGACG 57.372 40.909 0.00 0.00 42.66 5.12
619 649 4.148000 TGTTTTTACCGATTACGACGTGAC 59.852 41.667 11.56 0.89 42.66 3.67
702 735 3.996921 ATTTATGCCCCATTGCAACAA 57.003 38.095 0.00 0.00 45.84 2.83
911 945 0.036875 CTCCTTTGTGTCCCACCTCC 59.963 60.000 0.00 0.00 32.73 4.30
912 946 0.401395 TCCTTTGTGTCCCACCTCCT 60.401 55.000 0.00 0.00 32.73 3.69
913 947 0.036875 CCTTTGTGTCCCACCTCCTC 59.963 60.000 0.00 0.00 32.73 3.71
936 981 1.403687 CCCAATCCTCGTCTCCTCCC 61.404 65.000 0.00 0.00 0.00 4.30
985 1041 2.753009 ATCGGCTGGCTTGAAGCACA 62.753 55.000 19.89 13.06 44.75 4.57
1084 2116 1.146358 CTTAAGGCCTAGTGCGCGTC 61.146 60.000 5.16 0.00 42.61 5.19
1097 2129 1.063327 CGCGTCTCTGGCTCTGTAG 59.937 63.158 0.00 0.00 0.00 2.74
1104 2136 2.310349 TCTCTGGCTCTGTAGAAGTCCT 59.690 50.000 0.00 0.00 0.00 3.85
1114 2146 2.838202 TGTAGAAGTCCTGATGTTCCCC 59.162 50.000 0.00 0.00 0.00 4.81
1175 2208 2.812658 AGAGGGAAGGCATCCTTTTTG 58.187 47.619 8.88 0.00 44.82 2.44
1186 2219 2.259511 CTTTTTGGGCGCCAGCTC 59.740 61.111 30.85 11.60 46.24 4.09
1214 2248 2.155155 CGTCCTACTTTCTTTCGTGCAC 59.845 50.000 6.82 6.82 0.00 4.57
1244 2278 2.821969 CAAGGTTGCTATGCTTTCTGGT 59.178 45.455 0.00 0.00 0.00 4.00
1245 2279 2.440409 AGGTTGCTATGCTTTCTGGTG 58.560 47.619 0.00 0.00 0.00 4.17
1246 2280 1.474077 GGTTGCTATGCTTTCTGGTGG 59.526 52.381 0.00 0.00 0.00 4.61
1247 2281 2.162681 GTTGCTATGCTTTCTGGTGGT 58.837 47.619 0.00 0.00 0.00 4.16
1248 2282 2.558359 GTTGCTATGCTTTCTGGTGGTT 59.442 45.455 0.00 0.00 0.00 3.67
1249 2283 2.875296 TGCTATGCTTTCTGGTGGTTT 58.125 42.857 0.00 0.00 0.00 3.27
1315 2350 5.578727 TGTGCAAAAGTCATTAAACAACCAC 59.421 36.000 0.00 0.00 0.00 4.16
1332 2367 4.148128 ACCACCAAAATGCATGTTTTCA 57.852 36.364 0.00 0.00 0.00 2.69
1333 2368 4.716794 ACCACCAAAATGCATGTTTTCAT 58.283 34.783 0.00 0.00 41.78 2.57
1344 2379 2.270352 TGTTTTCATGCCGGAAGAGT 57.730 45.000 5.05 0.00 0.00 3.24
1345 2380 1.879380 TGTTTTCATGCCGGAAGAGTG 59.121 47.619 5.05 0.00 0.00 3.51
1346 2381 2.151202 GTTTTCATGCCGGAAGAGTGA 58.849 47.619 5.05 0.00 0.00 3.41
1347 2382 2.749621 GTTTTCATGCCGGAAGAGTGAT 59.250 45.455 5.05 0.00 0.00 3.06
1348 2383 2.787473 TTCATGCCGGAAGAGTGATT 57.213 45.000 5.05 0.00 0.00 2.57
1349 2384 2.315925 TCATGCCGGAAGAGTGATTC 57.684 50.000 5.05 0.00 0.00 2.52
1350 2385 1.833630 TCATGCCGGAAGAGTGATTCT 59.166 47.619 5.05 0.00 37.93 2.40
1362 2397 5.407407 AGAGTGATTCTTCCGTGTATTGT 57.593 39.130 0.00 0.00 29.61 2.71
1363 2398 5.794894 AGAGTGATTCTTCCGTGTATTGTT 58.205 37.500 0.00 0.00 29.61 2.83
1364 2399 6.931838 AGAGTGATTCTTCCGTGTATTGTTA 58.068 36.000 0.00 0.00 29.61 2.41
1365 2400 7.383687 AGAGTGATTCTTCCGTGTATTGTTAA 58.616 34.615 0.00 0.00 29.61 2.01
1366 2401 7.545965 AGAGTGATTCTTCCGTGTATTGTTAAG 59.454 37.037 0.00 0.00 29.61 1.85
1367 2402 6.594159 AGTGATTCTTCCGTGTATTGTTAAGG 59.406 38.462 0.00 0.00 0.00 2.69
1368 2403 5.878116 TGATTCTTCCGTGTATTGTTAAGGG 59.122 40.000 0.00 0.00 0.00 3.95
1369 2404 4.210724 TCTTCCGTGTATTGTTAAGGGG 57.789 45.455 0.00 0.00 0.00 4.79
1370 2405 3.583966 TCTTCCGTGTATTGTTAAGGGGT 59.416 43.478 0.00 0.00 0.00 4.95
1371 2406 3.337694 TCCGTGTATTGTTAAGGGGTG 57.662 47.619 0.00 0.00 0.00 4.61
1372 2407 2.638855 TCCGTGTATTGTTAAGGGGTGT 59.361 45.455 0.00 0.00 0.00 4.16
1373 2408 3.072768 TCCGTGTATTGTTAAGGGGTGTT 59.927 43.478 0.00 0.00 0.00 3.32
1374 2409 3.822167 CCGTGTATTGTTAAGGGGTGTTT 59.178 43.478 0.00 0.00 0.00 2.83
1375 2410 4.320641 CCGTGTATTGTTAAGGGGTGTTTG 60.321 45.833 0.00 0.00 0.00 2.93
1376 2411 4.276431 CGTGTATTGTTAAGGGGTGTTTGT 59.724 41.667 0.00 0.00 0.00 2.83
1377 2412 5.469421 CGTGTATTGTTAAGGGGTGTTTGTA 59.531 40.000 0.00 0.00 0.00 2.41
1378 2413 6.017275 CGTGTATTGTTAAGGGGTGTTTGTAA 60.017 38.462 0.00 0.00 0.00 2.41
1379 2414 7.140705 GTGTATTGTTAAGGGGTGTTTGTAAC 58.859 38.462 0.00 0.00 0.00 2.50
1380 2415 6.832384 TGTATTGTTAAGGGGTGTTTGTAACA 59.168 34.615 0.00 0.00 39.52 2.41
1398 2433 9.832445 TTTGTAACACAAACTCTATTCTCTCTT 57.168 29.630 0.45 0.00 42.55 2.85
1425 2460 7.979115 TTAATATACGTGGCAAATCTTTTGC 57.021 32.000 14.88 14.88 44.22 3.68
1433 2468 3.519908 GCAAATCTTTTGCCCGTTTTC 57.480 42.857 12.74 0.00 39.38 2.29
1434 2469 2.869192 GCAAATCTTTTGCCCGTTTTCA 59.131 40.909 12.74 0.00 39.38 2.69
1435 2470 3.311048 GCAAATCTTTTGCCCGTTTTCAA 59.689 39.130 12.74 0.00 39.38 2.69
1436 2471 4.552572 GCAAATCTTTTGCCCGTTTTCAAG 60.553 41.667 12.74 0.00 39.38 3.02
1437 2472 4.664150 AATCTTTTGCCCGTTTTCAAGA 57.336 36.364 0.00 0.00 0.00 3.02
1438 2473 4.664150 ATCTTTTGCCCGTTTTCAAGAA 57.336 36.364 0.00 0.00 0.00 2.52
1439 2474 4.457834 TCTTTTGCCCGTTTTCAAGAAA 57.542 36.364 0.00 0.00 0.00 2.52
1440 2475 4.822026 TCTTTTGCCCGTTTTCAAGAAAA 58.178 34.783 3.98 3.98 37.90 2.29
1441 2476 5.238583 TCTTTTGCCCGTTTTCAAGAAAAA 58.761 33.333 9.35 0.00 41.37 1.94
1543 2578 1.474330 TCGTCTAGATGCTGGCTTCA 58.526 50.000 7.11 0.00 0.00 3.02
1549 2584 1.811778 AGATGCTGGCTTCATCCCTA 58.188 50.000 13.30 0.00 40.79 3.53
1606 2641 1.898574 CGGCCTGCTGACCAGTTTT 60.899 57.895 0.00 0.00 40.06 2.43
1879 2917 3.258498 CGAAAACATCGTCGCACTG 57.742 52.632 0.00 0.00 46.52 3.66
1882 2920 0.586319 AAAACATCGTCGCACTGGTG 59.414 50.000 0.00 0.00 0.00 4.17
1940 2978 1.153686 GCGGAGAACGGTACCCTTC 60.154 63.158 13.94 13.94 44.51 3.46
2203 3241 3.351416 GACGAACAACCACCGCCC 61.351 66.667 0.00 0.00 0.00 6.13
2321 3363 5.063944 AGCATATGACTTCAGTTGCTTAACG 59.936 40.000 6.97 0.00 41.96 3.18
2452 3494 2.282407 GCCATTGAATTTGCCATCACC 58.718 47.619 0.00 0.00 0.00 4.02
2465 3507 3.138930 ATCACCGACGATGGAGGCG 62.139 63.158 0.00 0.00 0.00 5.52
2469 3511 3.518998 CGACGATGGAGGCGGAGT 61.519 66.667 0.00 0.00 0.00 3.85
2470 3512 2.413765 GACGATGGAGGCGGAGTC 59.586 66.667 0.00 0.00 0.00 3.36
2473 3515 2.764128 GATGGAGGCGGAGTCCCA 60.764 66.667 2.80 0.00 36.93 4.37
2476 3518 3.083997 GGAGGCGGAGTCCCATGT 61.084 66.667 2.80 0.00 0.00 3.21
2478 3520 1.742768 GAGGCGGAGTCCCATGTAG 59.257 63.158 2.80 0.00 0.00 2.74
2479 3521 1.749334 GAGGCGGAGTCCCATGTAGG 61.749 65.000 2.80 0.00 37.03 3.18
2480 3522 1.760875 GGCGGAGTCCCATGTAGGA 60.761 63.158 2.80 0.00 41.22 2.94
2481 3523 1.742768 GCGGAGTCCCATGTAGGAG 59.257 63.158 2.80 0.00 41.22 3.69
2482 3524 1.742768 CGGAGTCCCATGTAGGAGC 59.257 63.158 2.80 0.00 41.22 4.70
2864 5480 1.819903 TGTAACCGGCAAAAATAGGGC 59.180 47.619 0.00 0.00 0.00 5.19
2884 5500 4.438744 GGGCTGTGATATGTGTAGTTTTGC 60.439 45.833 0.00 0.00 0.00 3.68
2945 5563 5.705441 TGATCATGGGTTTTCAGTTGTACTC 59.295 40.000 0.00 0.00 0.00 2.59
3056 5683 2.027003 AGAGTACTCTCTCCGTTCGG 57.973 55.000 20.00 4.74 46.84 4.30
3057 5684 1.554160 AGAGTACTCTCTCCGTTCGGA 59.446 52.381 20.00 13.34 46.84 4.55
3058 5685 2.027377 AGAGTACTCTCTCCGTTCGGAA 60.027 50.000 20.00 5.84 46.84 4.30
3059 5686 2.746362 GAGTACTCTCTCCGTTCGGAAA 59.254 50.000 15.91 1.07 37.68 3.13
3060 5687 3.354467 AGTACTCTCTCCGTTCGGAAAT 58.646 45.455 14.79 0.00 33.41 2.17
3061 5688 4.521146 AGTACTCTCTCCGTTCGGAAATA 58.479 43.478 14.79 3.46 33.41 1.40
3062 5689 3.779271 ACTCTCTCCGTTCGGAAATAC 57.221 47.619 14.79 0.00 33.41 1.89
3063 5690 3.354467 ACTCTCTCCGTTCGGAAATACT 58.646 45.455 14.79 0.00 33.41 2.12
3064 5691 3.762823 ACTCTCTCCGTTCGGAAATACTT 59.237 43.478 14.79 0.00 33.41 2.24
3065 5692 4.106029 TCTCTCCGTTCGGAAATACTTG 57.894 45.455 14.79 2.23 33.41 3.16
3066 5693 3.508793 TCTCTCCGTTCGGAAATACTTGT 59.491 43.478 14.79 0.00 33.41 3.16
3067 5694 3.841643 TCTCCGTTCGGAAATACTTGTC 58.158 45.455 14.79 0.00 33.41 3.18
3068 5695 2.597305 CTCCGTTCGGAAATACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3069 5696 2.228582 TCCGTTCGGAAATACTTGTCGA 59.771 45.455 11.66 0.00 0.00 4.20
3070 5697 2.988493 CCGTTCGGAAATACTTGTCGAA 59.012 45.455 5.19 0.00 37.48 3.71
3071 5698 3.615496 CCGTTCGGAAATACTTGTCGAAT 59.385 43.478 5.19 0.00 40.96 3.34
3072 5699 4.799949 CCGTTCGGAAATACTTGTCGAATA 59.200 41.667 5.19 0.00 40.96 1.75
3073 5700 5.289193 CCGTTCGGAAATACTTGTCGAATAA 59.711 40.000 5.19 0.00 40.96 1.40
3074 5701 6.183360 CCGTTCGGAAATACTTGTCGAATAAA 60.183 38.462 5.19 0.00 40.96 1.40
3075 5702 7.396419 CGTTCGGAAATACTTGTCGAATAAAT 58.604 34.615 0.00 0.00 40.96 1.40
3076 5703 7.369800 CGTTCGGAAATACTTGTCGAATAAATG 59.630 37.037 0.00 0.00 40.96 2.32
3077 5704 7.241663 TCGGAAATACTTGTCGAATAAATGG 57.758 36.000 0.00 0.00 0.00 3.16
3078 5705 7.042950 TCGGAAATACTTGTCGAATAAATGGA 58.957 34.615 0.00 0.00 0.00 3.41
3079 5706 7.713507 TCGGAAATACTTGTCGAATAAATGGAT 59.286 33.333 0.00 0.00 0.00 3.41
3080 5707 8.984764 CGGAAATACTTGTCGAATAAATGGATA 58.015 33.333 0.00 0.00 0.00 2.59
3087 5714 9.801873 ACTTGTCGAATAAATGGATAAAAATGG 57.198 29.630 0.00 0.00 0.00 3.16
3090 5717 9.964303 TGTCGAATAAATGGATAAAAATGGATG 57.036 29.630 0.00 0.00 0.00 3.51
3091 5718 9.965824 GTCGAATAAATGGATAAAAATGGATGT 57.034 29.630 0.00 0.00 0.00 3.06
3130 5757 7.798486 ATACGTCTAGATACATTCATTTCGC 57.202 36.000 0.00 0.00 0.00 4.70
3131 5758 5.833082 ACGTCTAGATACATTCATTTCGCT 58.167 37.500 0.00 0.00 0.00 4.93
3132 5759 5.687730 ACGTCTAGATACATTCATTTCGCTG 59.312 40.000 0.00 0.00 0.00 5.18
3133 5760 5.915196 CGTCTAGATACATTCATTTCGCTGA 59.085 40.000 0.00 0.00 0.00 4.26
3134 5761 6.129326 CGTCTAGATACATTCATTTCGCTGAC 60.129 42.308 0.00 0.00 0.00 3.51
3135 5762 6.697455 GTCTAGATACATTCATTTCGCTGACA 59.303 38.462 0.00 0.00 0.00 3.58
3136 5763 7.222805 GTCTAGATACATTCATTTCGCTGACAA 59.777 37.037 0.00 0.00 0.00 3.18
3137 5764 6.355397 AGATACATTCATTTCGCTGACAAG 57.645 37.500 0.00 0.00 0.00 3.16
3138 5765 5.877012 AGATACATTCATTTCGCTGACAAGT 59.123 36.000 0.00 0.00 0.00 3.16
3139 5766 7.041721 AGATACATTCATTTCGCTGACAAGTA 58.958 34.615 0.00 0.00 0.00 2.24
3140 5767 7.712639 AGATACATTCATTTCGCTGACAAGTAT 59.287 33.333 0.00 0.00 0.00 2.12
3141 5768 6.500684 ACATTCATTTCGCTGACAAGTATT 57.499 33.333 0.00 0.00 0.00 1.89
3142 5769 6.913170 ACATTCATTTCGCTGACAAGTATTT 58.087 32.000 0.00 0.00 0.00 1.40
3143 5770 7.023575 ACATTCATTTCGCTGACAAGTATTTC 58.976 34.615 0.00 0.00 0.00 2.17
3144 5771 6.801539 TTCATTTCGCTGACAAGTATTTCT 57.198 33.333 0.00 0.00 0.00 2.52
3145 5772 6.169419 TCATTTCGCTGACAAGTATTTCTG 57.831 37.500 0.00 0.00 0.00 3.02
3146 5773 5.122239 TCATTTCGCTGACAAGTATTTCTGG 59.878 40.000 0.00 0.00 0.00 3.86
3147 5774 3.953712 TCGCTGACAAGTATTTCTGGA 57.046 42.857 0.00 0.00 0.00 3.86
3148 5775 3.585862 TCGCTGACAAGTATTTCTGGAC 58.414 45.455 0.00 0.00 0.00 4.02
3149 5776 2.345641 CGCTGACAAGTATTTCTGGACG 59.654 50.000 0.00 0.00 0.00 4.79
3150 5777 2.673368 GCTGACAAGTATTTCTGGACGG 59.327 50.000 0.00 0.00 0.00 4.79
3151 5778 3.616560 GCTGACAAGTATTTCTGGACGGA 60.617 47.826 0.00 0.00 0.00 4.69
3152 5779 4.177026 CTGACAAGTATTTCTGGACGGAG 58.823 47.826 0.00 0.00 0.00 4.63
3153 5780 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
3154 5781 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3155 5782 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
3156 5783 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
3157 5784 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
3233 5860 8.858186 CAAACGCAATTTTATCATTGTACATGA 58.142 29.630 0.00 3.44 36.63 3.07
3236 5863 9.585099 ACGCAATTTTATCATTGTACATGATTT 57.415 25.926 19.23 9.76 39.30 2.17
3273 5900 2.360350 CGCAGCCCATCTGTTGGT 60.360 61.111 4.19 0.00 44.83 3.67
3274 5901 1.973281 CGCAGCCCATCTGTTGGTT 60.973 57.895 4.19 0.00 44.83 3.67
3275 5902 1.588082 GCAGCCCATCTGTTGGTTG 59.412 57.895 4.19 3.77 44.83 3.77
3276 5903 1.880819 GCAGCCCATCTGTTGGTTGG 61.881 60.000 4.19 0.00 44.83 3.77
3277 5904 1.607467 AGCCCATCTGTTGGTTGGC 60.607 57.895 4.19 0.00 44.83 4.52
3278 5905 1.607467 GCCCATCTGTTGGTTGGCT 60.607 57.895 4.19 0.00 44.83 4.75
3279 5906 1.598701 GCCCATCTGTTGGTTGGCTC 61.599 60.000 4.19 0.00 44.83 4.70
3280 5907 1.308069 CCCATCTGTTGGTTGGCTCG 61.308 60.000 4.19 0.00 44.83 5.03
3281 5908 1.503542 CATCTGTTGGTTGGCTCGC 59.496 57.895 0.00 0.00 0.00 5.03
3282 5909 1.073025 ATCTGTTGGTTGGCTCGCA 59.927 52.632 0.00 0.00 0.00 5.10
3283 5910 0.957395 ATCTGTTGGTTGGCTCGCAG 60.957 55.000 0.00 0.00 0.00 5.18
3284 5911 3.259425 CTGTTGGTTGGCTCGCAGC 62.259 63.158 0.11 0.11 41.46 5.25
3329 5956 2.672961 TTCTTGTATCACGCTGAGGG 57.327 50.000 0.00 0.00 0.00 4.30
3330 5957 1.847328 TCTTGTATCACGCTGAGGGA 58.153 50.000 2.65 0.00 36.24 4.20
3331 5958 1.751351 TCTTGTATCACGCTGAGGGAG 59.249 52.381 2.65 0.00 34.57 4.30
3332 5959 1.751351 CTTGTATCACGCTGAGGGAGA 59.249 52.381 2.65 0.41 34.57 3.71
3333 5960 1.847328 TGTATCACGCTGAGGGAGAA 58.153 50.000 2.65 0.00 34.57 2.87
3334 5961 1.751351 TGTATCACGCTGAGGGAGAAG 59.249 52.381 2.65 0.00 34.57 2.85
3335 5962 2.025155 GTATCACGCTGAGGGAGAAGA 58.975 52.381 2.65 0.00 34.57 2.87
3336 5963 0.820871 ATCACGCTGAGGGAGAAGAC 59.179 55.000 2.65 0.00 34.57 3.01
3337 5964 0.251386 TCACGCTGAGGGAGAAGACT 60.251 55.000 2.65 0.00 0.00 3.24
3338 5965 0.172352 CACGCTGAGGGAGAAGACTC 59.828 60.000 2.65 0.00 41.94 3.36
3339 5966 0.039035 ACGCTGAGGGAGAAGACTCT 59.961 55.000 2.65 0.00 42.28 3.24
3340 5967 1.181786 CGCTGAGGGAGAAGACTCTT 58.818 55.000 0.00 0.00 42.28 2.85
3341 5968 1.135141 CGCTGAGGGAGAAGACTCTTG 60.135 57.143 0.00 0.00 42.28 3.02
3342 5969 1.899142 GCTGAGGGAGAAGACTCTTGT 59.101 52.381 0.00 0.00 42.28 3.16
3343 5970 2.353605 GCTGAGGGAGAAGACTCTTGTG 60.354 54.545 0.00 0.00 42.28 3.33
3344 5971 3.161067 CTGAGGGAGAAGACTCTTGTGA 58.839 50.000 0.00 0.00 42.28 3.58
3345 5972 3.768757 CTGAGGGAGAAGACTCTTGTGAT 59.231 47.826 0.00 0.00 42.28 3.06
3346 5973 3.513119 TGAGGGAGAAGACTCTTGTGATG 59.487 47.826 0.00 0.00 42.28 3.07
3347 5974 2.836981 AGGGAGAAGACTCTTGTGATGG 59.163 50.000 0.00 0.00 42.28 3.51
3348 5975 2.569404 GGGAGAAGACTCTTGTGATGGT 59.431 50.000 0.00 0.00 42.28 3.55
3349 5976 3.008485 GGGAGAAGACTCTTGTGATGGTT 59.992 47.826 0.00 0.00 42.28 3.67
3350 5977 4.505742 GGGAGAAGACTCTTGTGATGGTTT 60.506 45.833 0.00 0.00 42.28 3.27
3351 5978 5.066593 GGAGAAGACTCTTGTGATGGTTTT 58.933 41.667 0.00 0.00 42.28 2.43
3352 5979 5.532779 GGAGAAGACTCTTGTGATGGTTTTT 59.467 40.000 0.00 0.00 42.28 1.94
3369 5996 1.770294 TTTTTCCTTCGGCCTTGTGT 58.230 45.000 0.00 0.00 0.00 3.72
3370 5997 1.028905 TTTTCCTTCGGCCTTGTGTG 58.971 50.000 0.00 0.00 0.00 3.82
3371 5998 0.821711 TTTCCTTCGGCCTTGTGTGG 60.822 55.000 0.00 0.00 0.00 4.17
3372 5999 2.672996 CCTTCGGCCTTGTGTGGG 60.673 66.667 0.00 0.00 0.00 4.61
3378 6005 2.730094 GCCTTGTGTGGGCTTGTG 59.270 61.111 0.00 0.00 45.57 3.33
3379 6006 1.827789 GCCTTGTGTGGGCTTGTGA 60.828 57.895 0.00 0.00 45.57 3.58
3380 6007 2.032981 CCTTGTGTGGGCTTGTGAC 58.967 57.895 0.00 0.00 0.00 3.67
3381 6008 0.751277 CCTTGTGTGGGCTTGTGACA 60.751 55.000 0.00 0.00 0.00 3.58
3382 6009 1.321474 CTTGTGTGGGCTTGTGACAT 58.679 50.000 0.00 0.00 0.00 3.06
3383 6010 1.682854 CTTGTGTGGGCTTGTGACATT 59.317 47.619 0.00 0.00 0.00 2.71
3384 6011 1.031235 TGTGTGGGCTTGTGACATTG 58.969 50.000 0.00 0.00 0.00 2.82
3385 6012 0.318955 GTGTGGGCTTGTGACATTGC 60.319 55.000 3.06 3.06 0.00 3.56
3386 6013 1.290009 GTGGGCTTGTGACATTGCC 59.710 57.895 17.93 17.93 44.22 4.52
3387 6014 1.152589 TGGGCTTGTGACATTGCCA 60.153 52.632 24.29 12.53 46.53 4.92
3388 6015 1.290009 GGGCTTGTGACATTGCCAC 59.710 57.895 24.29 14.03 46.53 5.01
3389 6016 1.462731 GGGCTTGTGACATTGCCACA 61.463 55.000 24.29 1.27 46.53 4.17
3390 6017 0.604578 GGCTTGTGACATTGCCACAT 59.395 50.000 20.22 0.00 43.17 3.21
3391 6018 1.001181 GGCTTGTGACATTGCCACATT 59.999 47.619 20.22 0.00 43.17 2.71
3392 6019 2.063266 GCTTGTGACATTGCCACATTG 58.937 47.619 6.63 4.78 43.17 2.82
3393 6020 2.679450 CTTGTGACATTGCCACATTGG 58.321 47.619 6.63 0.00 43.17 3.16
3394 6021 0.967662 TGTGACATTGCCACATTGGG 59.032 50.000 1.27 0.00 39.36 4.12
3402 6029 4.850193 CCACATTGGGCCAGTTCT 57.150 55.556 6.23 0.00 32.67 3.01
3403 6030 3.056213 CCACATTGGGCCAGTTCTT 57.944 52.632 6.23 0.00 32.67 2.52
3404 6031 1.341080 CCACATTGGGCCAGTTCTTT 58.659 50.000 6.23 0.00 32.67 2.52
3405 6032 1.693606 CCACATTGGGCCAGTTCTTTT 59.306 47.619 6.23 0.00 32.67 2.27
3406 6033 2.104622 CCACATTGGGCCAGTTCTTTTT 59.895 45.455 6.23 0.00 32.67 1.94
3427 6054 5.959618 TTTTCTTTTTGTCCTAGGCTAGC 57.040 39.130 16.26 6.04 0.00 3.42
3428 6055 4.910458 TTCTTTTTGTCCTAGGCTAGCT 57.090 40.909 16.26 3.22 0.00 3.32
3429 6056 6.368779 TTTCTTTTTGTCCTAGGCTAGCTA 57.631 37.500 16.26 3.42 0.00 3.32
3430 6057 6.368779 TTCTTTTTGTCCTAGGCTAGCTAA 57.631 37.500 16.26 7.51 0.00 3.09
3431 6058 5.978814 TCTTTTTGTCCTAGGCTAGCTAAG 58.021 41.667 16.26 11.87 0.00 2.18
3432 6059 4.755266 TTTTGTCCTAGGCTAGCTAAGG 57.245 45.455 22.63 22.63 0.00 2.69
3433 6060 2.383442 TGTCCTAGGCTAGCTAAGGG 57.617 55.000 25.89 17.95 0.00 3.95
3434 6061 1.133136 TGTCCTAGGCTAGCTAAGGGG 60.133 57.143 25.89 16.59 0.00 4.79
3435 6062 1.133104 GTCCTAGGCTAGCTAAGGGGT 60.133 57.143 25.89 4.55 0.00 4.95
3436 6063 1.133136 TCCTAGGCTAGCTAAGGGGTG 60.133 57.143 25.89 9.16 0.00 4.61
3437 6064 0.682292 CTAGGCTAGCTAAGGGGTGC 59.318 60.000 15.72 0.00 0.00 5.01
3438 6065 0.031515 TAGGCTAGCTAAGGGGTGCA 60.032 55.000 15.72 0.00 0.00 4.57
3439 6066 1.153147 GGCTAGCTAAGGGGTGCAC 60.153 63.158 15.72 8.80 0.00 4.57
3440 6067 1.521681 GCTAGCTAAGGGGTGCACG 60.522 63.158 11.45 0.00 0.00 5.34
3441 6068 1.144057 CTAGCTAAGGGGTGCACGG 59.856 63.158 11.45 0.00 0.00 4.94
3442 6069 2.311688 CTAGCTAAGGGGTGCACGGG 62.312 65.000 11.45 0.00 0.00 5.28
3443 6070 2.808761 TAGCTAAGGGGTGCACGGGA 62.809 60.000 11.45 0.00 0.00 5.14
3444 6071 2.584608 CTAAGGGGTGCACGGGAG 59.415 66.667 11.45 0.00 0.00 4.30
3445 6072 1.987855 CTAAGGGGTGCACGGGAGA 60.988 63.158 11.45 0.00 0.00 3.71
3446 6073 1.306654 TAAGGGGTGCACGGGAGAT 60.307 57.895 11.45 0.00 0.00 2.75
3447 6074 0.031917 TAAGGGGTGCACGGGAGATA 60.032 55.000 11.45 0.00 0.00 1.98
3448 6075 0.912487 AAGGGGTGCACGGGAGATAA 60.912 55.000 11.45 0.00 0.00 1.75
3449 6076 1.153229 GGGGTGCACGGGAGATAAC 60.153 63.158 11.45 0.00 0.00 1.89
3450 6077 1.600107 GGGTGCACGGGAGATAACA 59.400 57.895 11.45 0.00 0.00 2.41
3451 6078 0.035820 GGGTGCACGGGAGATAACAA 60.036 55.000 11.45 0.00 0.00 2.83
3452 6079 1.369625 GGTGCACGGGAGATAACAAG 58.630 55.000 11.45 0.00 0.00 3.16
3453 6080 1.066430 GGTGCACGGGAGATAACAAGA 60.066 52.381 11.45 0.00 0.00 3.02
3454 6081 2.000447 GTGCACGGGAGATAACAAGAC 59.000 52.381 0.00 0.00 0.00 3.01
3455 6082 1.278238 GCACGGGAGATAACAAGACG 58.722 55.000 0.00 0.00 0.00 4.18
3456 6083 1.922570 CACGGGAGATAACAAGACGG 58.077 55.000 0.00 0.00 0.00 4.79
3457 6084 0.822164 ACGGGAGATAACAAGACGGG 59.178 55.000 0.00 0.00 0.00 5.28
3458 6085 0.822164 CGGGAGATAACAAGACGGGT 59.178 55.000 0.00 0.00 0.00 5.28
3459 6086 1.206371 CGGGAGATAACAAGACGGGTT 59.794 52.381 0.00 0.00 0.00 4.11
3460 6087 2.354403 CGGGAGATAACAAGACGGGTTT 60.354 50.000 0.00 0.00 0.00 3.27
3461 6088 3.682696 GGGAGATAACAAGACGGGTTTT 58.317 45.455 0.00 0.00 0.00 2.43
3462 6089 4.077108 GGGAGATAACAAGACGGGTTTTT 58.923 43.478 0.00 0.00 0.00 1.94
3484 6111 6.959671 TTTCTGCATTTCGTTTTTCTTTGT 57.040 29.167 0.00 0.00 0.00 2.83
3485 6112 6.959671 TTCTGCATTTCGTTTTTCTTTGTT 57.040 29.167 0.00 0.00 0.00 2.83
3486 6113 6.329838 TCTGCATTTCGTTTTTCTTTGTTG 57.670 33.333 0.00 0.00 0.00 3.33
3487 6114 5.866633 TCTGCATTTCGTTTTTCTTTGTTGT 59.133 32.000 0.00 0.00 0.00 3.32
3488 6115 6.367422 TCTGCATTTCGTTTTTCTTTGTTGTT 59.633 30.769 0.00 0.00 0.00 2.83
3489 6116 6.302615 TGCATTTCGTTTTTCTTTGTTGTTG 58.697 32.000 0.00 0.00 0.00 3.33
3490 6117 6.073548 TGCATTTCGTTTTTCTTTGTTGTTGT 60.074 30.769 0.00 0.00 0.00 3.32
3491 6118 7.116376 TGCATTTCGTTTTTCTTTGTTGTTGTA 59.884 29.630 0.00 0.00 0.00 2.41
3492 6119 8.113675 GCATTTCGTTTTTCTTTGTTGTTGTAT 58.886 29.630 0.00 0.00 0.00 2.29
3493 6120 9.965748 CATTTCGTTTTTCTTTGTTGTTGTATT 57.034 25.926 0.00 0.00 0.00 1.89
3587 6214 8.848474 TTTTTGTTTGGGAGAAAACATGTAAA 57.152 26.923 0.00 0.00 46.44 2.01
3588 6215 8.485976 TTTTGTTTGGGAGAAAACATGTAAAG 57.514 30.769 0.00 0.00 46.44 1.85
3589 6216 6.783708 TGTTTGGGAGAAAACATGTAAAGT 57.216 33.333 0.00 0.00 43.34 2.66
3590 6217 7.176589 TGTTTGGGAGAAAACATGTAAAGTT 57.823 32.000 0.00 0.00 43.34 2.66
3591 6218 7.616313 TGTTTGGGAGAAAACATGTAAAGTTT 58.384 30.769 0.00 0.00 43.34 2.66
3593 6220 8.941977 GTTTGGGAGAAAACATGTAAAGTTTTT 58.058 29.630 0.00 0.00 46.01 1.94
3621 6248 9.956640 AAAACTGATTCTACTCAGATGAGATTT 57.043 29.630 16.52 0.00 44.48 2.17
3622 6249 8.945481 AACTGATTCTACTCAGATGAGATTTG 57.055 34.615 16.52 3.94 44.48 2.32
3623 6250 7.499292 ACTGATTCTACTCAGATGAGATTTGG 58.501 38.462 16.52 0.00 44.48 3.28
3624 6251 7.125507 ACTGATTCTACTCAGATGAGATTTGGT 59.874 37.037 16.52 0.00 44.48 3.67
3625 6252 7.495901 TGATTCTACTCAGATGAGATTTGGTC 58.504 38.462 16.52 7.59 44.74 4.02
3626 6253 6.857437 TTCTACTCAGATGAGATTTGGTCA 57.143 37.500 16.52 0.00 44.74 4.02
3627 6254 6.857437 TCTACTCAGATGAGATTTGGTCAA 57.143 37.500 16.52 0.00 44.74 3.18
3628 6255 7.429374 TCTACTCAGATGAGATTTGGTCAAT 57.571 36.000 16.52 0.00 44.74 2.57
3629 6256 7.855375 TCTACTCAGATGAGATTTGGTCAATT 58.145 34.615 16.52 0.00 44.74 2.32
3630 6257 8.324306 TCTACTCAGATGAGATTTGGTCAATTT 58.676 33.333 16.52 0.00 44.74 1.82
3631 6258 7.771927 ACTCAGATGAGATTTGGTCAATTTT 57.228 32.000 16.52 0.00 44.74 1.82
3632 6259 8.186709 ACTCAGATGAGATTTGGTCAATTTTT 57.813 30.769 16.52 0.00 44.74 1.94
3633 6260 8.086522 ACTCAGATGAGATTTGGTCAATTTTTG 58.913 33.333 16.52 0.00 44.74 2.44
3634 6261 8.180706 TCAGATGAGATTTGGTCAATTTTTGA 57.819 30.769 0.00 0.00 37.33 2.69
3635 6262 8.640651 TCAGATGAGATTTGGTCAATTTTTGAA 58.359 29.630 0.00 0.00 42.15 2.69
3636 6263 9.263538 CAGATGAGATTTGGTCAATTTTTGAAA 57.736 29.630 0.00 0.00 42.15 2.69
3639 6266 8.961294 TGAGATTTGGTCAATTTTTGAAATGT 57.039 26.923 0.00 0.00 42.15 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 4.574013 GGAACAGGCTTATGTCTCTCATTG 59.426 45.833 0.00 0.00 37.91 2.82
82 83 0.107654 GGCGGAACAGGCTTATGTCT 60.108 55.000 0.00 0.00 31.50 3.41
87 88 1.748879 GCATGGCGGAACAGGCTTA 60.749 57.895 0.00 0.00 44.10 3.09
88 89 3.064324 GCATGGCGGAACAGGCTT 61.064 61.111 0.00 0.00 44.10 4.35
92 93 1.078918 TCAGAGCATGGCGGAACAG 60.079 57.895 0.00 0.00 0.00 3.16
118 119 1.198759 AAGACCCATGCCACCTACGT 61.199 55.000 0.00 0.00 0.00 3.57
325 326 1.545706 GGGATCCCTCGCCATCCTAC 61.546 65.000 24.69 0.00 38.98 3.18
350 351 1.961180 CTGTCCGACATGGGGTCTCC 61.961 65.000 0.62 0.00 44.68 3.71
373 374 2.758979 CCTTACCTCGTCCAAGAAGCTA 59.241 50.000 0.00 0.00 0.00 3.32
375 376 1.275573 ACCTTACCTCGTCCAAGAAGC 59.724 52.381 0.00 0.00 0.00 3.86
381 382 1.541310 CCTGCACCTTACCTCGTCCA 61.541 60.000 0.00 0.00 0.00 4.02
537 555 6.389906 AGCTGGCAAAGATTACACAAATTAC 58.610 36.000 0.00 0.00 0.00 1.89
547 565 4.082787 GCAAGTGTAAGCTGGCAAAGATTA 60.083 41.667 0.00 0.00 35.68 1.75
557 576 3.435105 TTTTGGTGCAAGTGTAAGCTG 57.565 42.857 0.00 0.00 0.00 4.24
656 689 4.772624 TCTAGCGGATTAGCCTATGATTGT 59.227 41.667 0.00 0.00 38.01 2.71
663 696 7.926555 GCATAAATATTCTAGCGGATTAGCCTA 59.073 37.037 0.00 0.00 38.01 3.93
702 735 3.544684 TCCAATCAGCTAATCGCACATT 58.455 40.909 0.00 0.00 42.61 2.71
720 753 2.234661 CTCAGCAACTACCACTGATCCA 59.765 50.000 0.00 0.00 39.57 3.41
725 758 3.321497 GAAGACTCAGCAACTACCACTG 58.679 50.000 0.00 0.00 0.00 3.66
734 767 1.188219 AGAGGGCGAAGACTCAGCAA 61.188 55.000 4.78 0.00 35.90 3.91
806 839 0.584396 CTCGATAGCTCGCGTCTCTT 59.416 55.000 5.77 0.00 44.65 2.85
911 945 1.038130 AGACGAGGATTGGGGACGAG 61.038 60.000 0.00 0.00 0.00 4.18
912 946 1.000019 AGACGAGGATTGGGGACGA 60.000 57.895 0.00 0.00 0.00 4.20
913 947 1.437986 GAGACGAGGATTGGGGACG 59.562 63.158 0.00 0.00 0.00 4.79
959 1015 4.845580 AGCCAGCCGATGCGAAGG 62.846 66.667 0.00 0.00 44.33 3.46
985 1041 0.034767 TCCATCGTCGGGAGTAGTGT 60.035 55.000 0.00 0.00 0.00 3.55
1084 2116 2.426738 CAGGACTTCTACAGAGCCAGAG 59.573 54.545 0.00 0.00 0.00 3.35
1097 2129 0.744771 GCGGGGAACATCAGGACTTC 60.745 60.000 0.00 0.00 0.00 3.01
1104 2136 4.090588 GGACGGCGGGGAACATCA 62.091 66.667 13.24 0.00 0.00 3.07
1135 2167 6.146673 CCCTCTAAAACAAAGTACGTACTTGG 59.853 42.308 34.93 33.49 45.17 3.61
1175 2208 4.452733 AACTACGAGCTGGCGCCC 62.453 66.667 26.77 9.73 36.60 6.13
1186 2219 4.552660 CGAAAGAAAGTAGGACGAACTACG 59.447 45.833 12.94 0.00 46.14 3.51
1281 2315 7.837202 AATGACTTTTGCACAATTATGATGG 57.163 32.000 0.00 0.00 0.00 3.51
1311 2346 4.148128 TGAAAACATGCATTTTGGTGGT 57.852 36.364 0.00 0.00 31.90 4.16
1340 2375 5.407407 ACAATACACGGAAGAATCACTCT 57.593 39.130 0.00 0.00 35.13 3.24
1341 2376 7.201530 CCTTAACAATACACGGAAGAATCACTC 60.202 40.741 0.00 0.00 0.00 3.51
1342 2377 6.594159 CCTTAACAATACACGGAAGAATCACT 59.406 38.462 0.00 0.00 0.00 3.41
1343 2378 6.183360 CCCTTAACAATACACGGAAGAATCAC 60.183 42.308 0.00 0.00 0.00 3.06
1344 2379 5.878116 CCCTTAACAATACACGGAAGAATCA 59.122 40.000 0.00 0.00 0.00 2.57
1345 2380 5.296035 CCCCTTAACAATACACGGAAGAATC 59.704 44.000 0.00 0.00 0.00 2.52
1346 2381 5.190677 CCCCTTAACAATACACGGAAGAAT 58.809 41.667 0.00 0.00 0.00 2.40
1347 2382 4.041938 ACCCCTTAACAATACACGGAAGAA 59.958 41.667 0.00 0.00 0.00 2.52
1348 2383 3.583966 ACCCCTTAACAATACACGGAAGA 59.416 43.478 0.00 0.00 0.00 2.87
1349 2384 3.687698 CACCCCTTAACAATACACGGAAG 59.312 47.826 0.00 0.00 0.00 3.46
1350 2385 3.072768 ACACCCCTTAACAATACACGGAA 59.927 43.478 0.00 0.00 0.00 4.30
1352 2387 3.062122 ACACCCCTTAACAATACACGG 57.938 47.619 0.00 0.00 0.00 4.94
1353 2388 4.276431 ACAAACACCCCTTAACAATACACG 59.724 41.667 0.00 0.00 0.00 4.49
1354 2389 5.777850 ACAAACACCCCTTAACAATACAC 57.222 39.130 0.00 0.00 0.00 2.90
1355 2390 6.832384 TGTTACAAACACCCCTTAACAATACA 59.168 34.615 0.00 0.00 36.25 2.29
1356 2391 7.274603 TGTTACAAACACCCCTTAACAATAC 57.725 36.000 0.00 0.00 36.25 1.89
1372 2407 9.832445 AAGAGAGAATAGAGTTTGTGTTACAAA 57.168 29.630 3.20 3.20 44.91 2.83
1399 2434 9.030301 GCAAAAGATTTGCCACGTATATTAATT 57.970 29.630 15.12 0.00 39.38 1.40
1400 2435 8.574196 GCAAAAGATTTGCCACGTATATTAAT 57.426 30.769 15.12 0.00 39.38 1.40
1401 2436 7.979115 GCAAAAGATTTGCCACGTATATTAA 57.021 32.000 15.12 0.00 39.38 1.40
1413 2448 2.869192 TGAAAACGGGCAAAAGATTTGC 59.131 40.909 17.18 17.18 44.22 3.68
1414 2449 4.808364 TCTTGAAAACGGGCAAAAGATTTG 59.192 37.500 0.00 0.00 0.00 2.32
1415 2450 5.017294 TCTTGAAAACGGGCAAAAGATTT 57.983 34.783 0.00 0.00 0.00 2.17
1416 2451 4.664150 TCTTGAAAACGGGCAAAAGATT 57.336 36.364 0.00 0.00 0.00 2.40
1417 2452 4.664150 TTCTTGAAAACGGGCAAAAGAT 57.336 36.364 0.00 0.00 0.00 2.40
1418 2453 4.457834 TTTCTTGAAAACGGGCAAAAGA 57.542 36.364 0.00 0.00 0.00 2.52
1419 2454 5.538067 TTTTTCTTGAAAACGGGCAAAAG 57.462 34.783 7.90 0.00 32.44 2.27
1440 2475 4.053469 CCACAATTGGGTCGAAGTTTTT 57.947 40.909 10.83 0.00 39.57 1.94
1441 2476 3.726291 CCACAATTGGGTCGAAGTTTT 57.274 42.857 10.83 0.00 39.57 2.43
1472 2507 9.554724 GCATGTCGAATTTCAAAGAGTAAATTA 57.445 29.630 0.00 0.00 35.87 1.40
1543 2578 0.969894 GCTCCGTATGCAGTAGGGAT 59.030 55.000 14.07 0.00 44.16 3.85
1549 2584 4.530857 GGCGGCTCCGTATGCAGT 62.531 66.667 10.24 0.00 42.09 4.40
1700 2735 2.413142 GCCCTGCTTCATCACAGCC 61.413 63.158 0.00 0.00 36.33 4.85
1879 2917 2.360475 GGAGTGGAAGCAGGCACC 60.360 66.667 0.00 0.00 0.00 5.01
1882 2920 4.785453 CCGGGAGTGGAAGCAGGC 62.785 72.222 0.00 0.00 0.00 4.85
1940 2978 2.764314 GCGGGTGCAGCCACTTATG 61.764 63.158 32.71 17.20 41.75 1.90
2197 3235 2.903350 GGTTGAAACGTGGGCGGT 60.903 61.111 0.00 0.00 43.45 5.68
2203 3241 1.796459 CCGGTAAGAGGTTGAAACGTG 59.204 52.381 0.00 0.00 0.00 4.49
2435 3477 2.159393 CGTCGGTGATGGCAAATTCAAT 60.159 45.455 0.00 0.00 0.00 2.57
2452 3494 3.471244 GACTCCGCCTCCATCGTCG 62.471 68.421 0.00 0.00 0.00 5.12
2465 3507 0.755686 CAGCTCCTACATGGGACTCC 59.244 60.000 0.00 0.00 36.20 3.85
2469 3511 2.072487 GGCCAGCTCCTACATGGGA 61.072 63.158 0.00 0.00 34.52 4.37
2470 3512 2.377810 TGGCCAGCTCCTACATGGG 61.378 63.158 0.00 0.00 34.52 4.00
2473 3515 1.680522 CTCGTGGCCAGCTCCTACAT 61.681 60.000 5.11 0.00 0.00 2.29
2476 3518 1.192146 AAACTCGTGGCCAGCTCCTA 61.192 55.000 5.11 0.00 0.00 2.94
2478 3520 2.032681 AAACTCGTGGCCAGCTCC 59.967 61.111 5.11 0.00 0.00 4.70
2479 3521 2.328099 CCAAACTCGTGGCCAGCTC 61.328 63.158 5.11 0.00 0.00 4.09
2480 3522 2.281761 CCAAACTCGTGGCCAGCT 60.282 61.111 5.11 0.00 0.00 4.24
2767 5381 1.052124 ACAACGGGGAGGAGAACACA 61.052 55.000 0.00 0.00 0.00 3.72
2864 5480 6.486253 ACAGCAAAACTACACATATCACAG 57.514 37.500 0.00 0.00 0.00 3.66
2908 5526 4.132336 CCCATGATCACTTCATACACTGG 58.868 47.826 0.00 0.00 43.40 4.00
2945 5563 7.465989 TCTTTCTACGTTTACAACAAAACTGG 58.534 34.615 0.00 0.00 37.24 4.00
3045 5672 3.846360 ACAAGTATTTCCGAACGGAGAG 58.154 45.455 15.34 2.86 46.06 3.20
3046 5673 3.671433 CGACAAGTATTTCCGAACGGAGA 60.671 47.826 15.34 12.07 46.06 3.71
3047 5674 2.597305 CGACAAGTATTTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3048 5675 2.228582 TCGACAAGTATTTCCGAACGGA 59.771 45.455 12.04 12.04 43.52 4.69
3049 5676 2.598589 TCGACAAGTATTTCCGAACGG 58.401 47.619 6.94 6.94 0.00 4.44
3050 5677 4.835199 ATTCGACAAGTATTTCCGAACG 57.165 40.909 0.00 0.00 41.15 3.95
3051 5678 7.638683 CCATTTATTCGACAAGTATTTCCGAAC 59.361 37.037 0.00 0.00 41.15 3.95
3052 5679 7.549842 TCCATTTATTCGACAAGTATTTCCGAA 59.450 33.333 0.00 0.00 42.27 4.30
3053 5680 7.042950 TCCATTTATTCGACAAGTATTTCCGA 58.957 34.615 0.00 0.00 0.00 4.55
3054 5681 7.241663 TCCATTTATTCGACAAGTATTTCCG 57.758 36.000 0.00 0.00 0.00 4.30
3061 5688 9.801873 CCATTTTTATCCATTTATTCGACAAGT 57.198 29.630 0.00 0.00 0.00 3.16
3064 5691 9.964303 CATCCATTTTTATCCATTTATTCGACA 57.036 29.630 0.00 0.00 0.00 4.35
3065 5692 9.965824 ACATCCATTTTTATCCATTTATTCGAC 57.034 29.630 0.00 0.00 0.00 4.20
3104 5731 8.700644 GCGAAATGAATGTATCTAGACGTATTT 58.299 33.333 0.00 0.00 0.00 1.40
3105 5732 8.082852 AGCGAAATGAATGTATCTAGACGTATT 58.917 33.333 0.00 0.00 0.00 1.89
3106 5733 7.539022 CAGCGAAATGAATGTATCTAGACGTAT 59.461 37.037 0.00 0.00 0.00 3.06
3107 5734 6.856426 CAGCGAAATGAATGTATCTAGACGTA 59.144 38.462 0.00 0.00 0.00 3.57
3108 5735 5.687730 CAGCGAAATGAATGTATCTAGACGT 59.312 40.000 0.00 0.00 0.00 4.34
3109 5736 5.915196 TCAGCGAAATGAATGTATCTAGACG 59.085 40.000 0.00 0.00 0.00 4.18
3110 5737 6.697455 TGTCAGCGAAATGAATGTATCTAGAC 59.303 38.462 0.00 0.00 0.00 2.59
3111 5738 6.805713 TGTCAGCGAAATGAATGTATCTAGA 58.194 36.000 0.00 0.00 0.00 2.43
3112 5739 7.223582 ACTTGTCAGCGAAATGAATGTATCTAG 59.776 37.037 0.00 0.00 0.00 2.43
3113 5740 7.041721 ACTTGTCAGCGAAATGAATGTATCTA 58.958 34.615 0.00 0.00 0.00 1.98
3114 5741 5.877012 ACTTGTCAGCGAAATGAATGTATCT 59.123 36.000 0.00 0.00 0.00 1.98
3115 5742 6.111768 ACTTGTCAGCGAAATGAATGTATC 57.888 37.500 0.00 0.00 0.00 2.24
3116 5743 7.792374 ATACTTGTCAGCGAAATGAATGTAT 57.208 32.000 0.00 0.00 0.00 2.29
3117 5744 7.609760 AATACTTGTCAGCGAAATGAATGTA 57.390 32.000 0.00 0.00 0.00 2.29
3118 5745 6.500684 AATACTTGTCAGCGAAATGAATGT 57.499 33.333 0.00 0.00 0.00 2.71
3119 5746 7.217636 CAGAAATACTTGTCAGCGAAATGAATG 59.782 37.037 0.00 0.00 0.00 2.67
3120 5747 7.246311 CAGAAATACTTGTCAGCGAAATGAAT 58.754 34.615 0.00 0.00 0.00 2.57
3121 5748 6.348458 CCAGAAATACTTGTCAGCGAAATGAA 60.348 38.462 0.00 0.00 0.00 2.57
3122 5749 5.122239 CCAGAAATACTTGTCAGCGAAATGA 59.878 40.000 0.00 0.00 0.00 2.57
3123 5750 5.122239 TCCAGAAATACTTGTCAGCGAAATG 59.878 40.000 0.00 0.00 0.00 2.32
3124 5751 5.122396 GTCCAGAAATACTTGTCAGCGAAAT 59.878 40.000 0.00 0.00 0.00 2.17
3125 5752 4.451096 GTCCAGAAATACTTGTCAGCGAAA 59.549 41.667 0.00 0.00 0.00 3.46
3126 5753 3.994392 GTCCAGAAATACTTGTCAGCGAA 59.006 43.478 0.00 0.00 0.00 4.70
3127 5754 3.585862 GTCCAGAAATACTTGTCAGCGA 58.414 45.455 0.00 0.00 0.00 4.93
3128 5755 2.345641 CGTCCAGAAATACTTGTCAGCG 59.654 50.000 0.00 0.00 0.00 5.18
3129 5756 2.673368 CCGTCCAGAAATACTTGTCAGC 59.327 50.000 0.00 0.00 0.00 4.26
3130 5757 4.177026 CTCCGTCCAGAAATACTTGTCAG 58.823 47.826 0.00 0.00 0.00 3.51
3131 5758 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
3132 5759 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3133 5760 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3134 5761 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3135 5762 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
3136 5763 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
3137 5764 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
3138 5765 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
3139 5766 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
3140 5767 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.00 0.00 2.52
3141 5768 2.544844 AATACTCCCTCCGTCCAGAA 57.455 50.000 0.00 0.00 0.00 3.02
3142 5769 2.024273 AGAAATACTCCCTCCGTCCAGA 60.024 50.000 0.00 0.00 0.00 3.86
3143 5770 2.389715 AGAAATACTCCCTCCGTCCAG 58.610 52.381 0.00 0.00 0.00 3.86
3144 5771 2.544844 AGAAATACTCCCTCCGTCCA 57.455 50.000 0.00 0.00 0.00 4.02
3145 5772 3.908643 AAAGAAATACTCCCTCCGTCC 57.091 47.619 0.00 0.00 0.00 4.79
3146 5773 5.087391 AGAAAAGAAATACTCCCTCCGTC 57.913 43.478 0.00 0.00 0.00 4.79
3147 5774 5.500546 AAGAAAAGAAATACTCCCTCCGT 57.499 39.130 0.00 0.00 0.00 4.69
3148 5775 6.819397 AAAAGAAAAGAAATACTCCCTCCG 57.181 37.500 0.00 0.00 0.00 4.63
3149 5776 7.867909 CACAAAAAGAAAAGAAATACTCCCTCC 59.132 37.037 0.00 0.00 0.00 4.30
3150 5777 8.630037 TCACAAAAAGAAAAGAAATACTCCCTC 58.370 33.333 0.00 0.00 0.00 4.30
3151 5778 8.533569 TCACAAAAAGAAAAGAAATACTCCCT 57.466 30.769 0.00 0.00 0.00 4.20
3152 5779 9.594478 TTTCACAAAAAGAAAAGAAATACTCCC 57.406 29.630 0.00 0.00 32.47 4.30
3263 5890 1.236616 TGCGAGCCAACCAACAGATG 61.237 55.000 0.00 0.00 0.00 2.90
3264 5891 0.957395 CTGCGAGCCAACCAACAGAT 60.957 55.000 0.00 0.00 0.00 2.90
3265 5892 1.597854 CTGCGAGCCAACCAACAGA 60.598 57.895 0.00 0.00 0.00 3.41
3266 5893 2.949106 CTGCGAGCCAACCAACAG 59.051 61.111 0.00 0.00 0.00 3.16
3267 5894 3.286751 GCTGCGAGCCAACCAACA 61.287 61.111 0.00 0.00 34.48 3.33
3307 5934 3.751175 CCCTCAGCGTGATACAAGAAAAA 59.249 43.478 0.00 0.00 0.00 1.94
3308 5935 3.007506 TCCCTCAGCGTGATACAAGAAAA 59.992 43.478 0.00 0.00 0.00 2.29
3309 5936 2.565391 TCCCTCAGCGTGATACAAGAAA 59.435 45.455 0.00 0.00 0.00 2.52
3310 5937 2.166459 CTCCCTCAGCGTGATACAAGAA 59.834 50.000 0.00 0.00 0.00 2.52
3311 5938 1.751351 CTCCCTCAGCGTGATACAAGA 59.249 52.381 0.00 0.00 0.00 3.02
3312 5939 1.751351 TCTCCCTCAGCGTGATACAAG 59.249 52.381 0.00 0.00 0.00 3.16
3313 5940 1.847328 TCTCCCTCAGCGTGATACAA 58.153 50.000 0.00 0.00 0.00 2.41
3314 5941 1.751351 CTTCTCCCTCAGCGTGATACA 59.249 52.381 0.00 0.00 0.00 2.29
3315 5942 2.025155 TCTTCTCCCTCAGCGTGATAC 58.975 52.381 0.00 0.00 0.00 2.24
3316 5943 2.025155 GTCTTCTCCCTCAGCGTGATA 58.975 52.381 0.00 0.00 0.00 2.15
3317 5944 0.820871 GTCTTCTCCCTCAGCGTGAT 59.179 55.000 0.00 0.00 0.00 3.06
3318 5945 0.251386 AGTCTTCTCCCTCAGCGTGA 60.251 55.000 0.00 0.00 0.00 4.35
3319 5946 0.172352 GAGTCTTCTCCCTCAGCGTG 59.828 60.000 0.00 0.00 34.87 5.34
3320 5947 0.039035 AGAGTCTTCTCCCTCAGCGT 59.961 55.000 0.00 0.00 41.26 5.07
3321 5948 1.135141 CAAGAGTCTTCTCCCTCAGCG 60.135 57.143 1.26 0.00 41.26 5.18
3322 5949 1.899142 ACAAGAGTCTTCTCCCTCAGC 59.101 52.381 1.26 0.00 41.26 4.26
3323 5950 3.161067 TCACAAGAGTCTTCTCCCTCAG 58.839 50.000 1.26 0.00 41.26 3.35
3324 5951 3.244887 TCACAAGAGTCTTCTCCCTCA 57.755 47.619 1.26 0.00 41.26 3.86
3325 5952 3.118811 CCATCACAAGAGTCTTCTCCCTC 60.119 52.174 1.26 0.00 41.26 4.30
3326 5953 2.836981 CCATCACAAGAGTCTTCTCCCT 59.163 50.000 1.26 0.00 41.26 4.20
3327 5954 2.569404 ACCATCACAAGAGTCTTCTCCC 59.431 50.000 1.26 0.00 41.26 4.30
3328 5955 3.971245 ACCATCACAAGAGTCTTCTCC 57.029 47.619 1.26 0.00 41.26 3.71
3329 5956 6.625873 AAAAACCATCACAAGAGTCTTCTC 57.374 37.500 1.26 0.00 40.70 2.87
3356 5983 3.365265 GCCCACACAAGGCCGAAG 61.365 66.667 0.00 0.00 45.16 3.79
3362 5989 0.751277 TGTCACAAGCCCACACAAGG 60.751 55.000 0.00 0.00 0.00 3.61
3363 5990 1.321474 ATGTCACAAGCCCACACAAG 58.679 50.000 0.00 0.00 0.00 3.16
3364 5991 1.408340 CAATGTCACAAGCCCACACAA 59.592 47.619 0.00 0.00 0.00 3.33
3365 5992 1.031235 CAATGTCACAAGCCCACACA 58.969 50.000 0.00 0.00 0.00 3.72
3366 5993 0.318955 GCAATGTCACAAGCCCACAC 60.319 55.000 0.00 0.00 0.00 3.82
3367 5994 1.462731 GGCAATGTCACAAGCCCACA 61.463 55.000 12.52 0.00 41.25 4.17
3368 5995 1.290009 GGCAATGTCACAAGCCCAC 59.710 57.895 12.52 0.00 41.25 4.61
3369 5996 1.152589 TGGCAATGTCACAAGCCCA 60.153 52.632 18.97 5.96 46.45 5.36
3370 5997 1.290009 GTGGCAATGTCACAAGCCC 59.710 57.895 18.97 9.01 46.45 5.19
3371 5998 2.040330 TGTGGCAATGTCACAAGCC 58.960 52.632 19.11 15.86 45.44 4.35
3376 6003 3.818586 CCCAATGTGGCAATGTCAC 57.181 52.632 11.55 11.55 38.79 3.67
3385 6012 1.341080 AAAGAACTGGCCCAATGTGG 58.659 50.000 0.00 0.00 37.25 4.17
3386 6013 3.473923 AAAAAGAACTGGCCCAATGTG 57.526 42.857 0.00 0.00 0.00 3.21
3404 6031 6.068670 AGCTAGCCTAGGACAAAAAGAAAAA 58.931 36.000 14.75 0.00 0.00 1.94
3405 6032 5.631119 AGCTAGCCTAGGACAAAAAGAAAA 58.369 37.500 14.75 0.00 0.00 2.29
3406 6033 5.242795 AGCTAGCCTAGGACAAAAAGAAA 57.757 39.130 14.75 0.00 0.00 2.52
3407 6034 4.910458 AGCTAGCCTAGGACAAAAAGAA 57.090 40.909 14.75 0.00 0.00 2.52
3408 6035 5.104900 CCTTAGCTAGCCTAGGACAAAAAGA 60.105 44.000 22.36 0.00 0.00 2.52
3409 6036 5.119694 CCTTAGCTAGCCTAGGACAAAAAG 58.880 45.833 22.36 7.96 0.00 2.27
3410 6037 4.080526 CCCTTAGCTAGCCTAGGACAAAAA 60.081 45.833 26.47 0.00 0.00 1.94
3411 6038 3.454812 CCCTTAGCTAGCCTAGGACAAAA 59.545 47.826 26.47 0.00 0.00 2.44
3412 6039 3.039011 CCCTTAGCTAGCCTAGGACAAA 58.961 50.000 26.47 4.41 0.00 2.83
3413 6040 2.679082 CCCTTAGCTAGCCTAGGACAA 58.321 52.381 26.47 0.00 0.00 3.18
3414 6041 1.133136 CCCCTTAGCTAGCCTAGGACA 60.133 57.143 26.47 0.00 0.00 4.02
3415 6042 1.133104 ACCCCTTAGCTAGCCTAGGAC 60.133 57.143 26.47 3.76 0.00 3.85
3416 6043 1.133136 CACCCCTTAGCTAGCCTAGGA 60.133 57.143 26.47 4.11 0.00 2.94
3417 6044 1.343069 CACCCCTTAGCTAGCCTAGG 58.657 60.000 20.67 20.67 0.00 3.02
3418 6045 0.682292 GCACCCCTTAGCTAGCCTAG 59.318 60.000 12.13 8.91 0.00 3.02
3419 6046 0.031515 TGCACCCCTTAGCTAGCCTA 60.032 55.000 12.13 0.13 0.00 3.93
3420 6047 1.306997 TGCACCCCTTAGCTAGCCT 60.307 57.895 12.13 1.20 0.00 4.58
3421 6048 1.153147 GTGCACCCCTTAGCTAGCC 60.153 63.158 12.13 0.00 0.00 3.93
3422 6049 1.521681 CGTGCACCCCTTAGCTAGC 60.522 63.158 12.15 6.62 0.00 3.42
3423 6050 1.144057 CCGTGCACCCCTTAGCTAG 59.856 63.158 12.15 0.00 0.00 3.42
3424 6051 2.363975 CCCGTGCACCCCTTAGCTA 61.364 63.158 12.15 0.00 0.00 3.32
3425 6052 3.717294 CCCGTGCACCCCTTAGCT 61.717 66.667 12.15 0.00 0.00 3.32
3426 6053 3.682292 CTCCCGTGCACCCCTTAGC 62.682 68.421 12.15 0.00 0.00 3.09
3427 6054 1.338136 ATCTCCCGTGCACCCCTTAG 61.338 60.000 12.15 2.22 0.00 2.18
3428 6055 0.031917 TATCTCCCGTGCACCCCTTA 60.032 55.000 12.15 0.00 0.00 2.69
3429 6056 0.912487 TTATCTCCCGTGCACCCCTT 60.912 55.000 12.15 0.00 0.00 3.95
3430 6057 1.306654 TTATCTCCCGTGCACCCCT 60.307 57.895 12.15 0.00 0.00 4.79
3431 6058 1.153229 GTTATCTCCCGTGCACCCC 60.153 63.158 12.15 0.00 0.00 4.95
3432 6059 0.035820 TTGTTATCTCCCGTGCACCC 60.036 55.000 12.15 0.00 0.00 4.61
3433 6060 1.066430 TCTTGTTATCTCCCGTGCACC 60.066 52.381 12.15 0.00 0.00 5.01
3434 6061 2.000447 GTCTTGTTATCTCCCGTGCAC 59.000 52.381 6.82 6.82 0.00 4.57
3435 6062 1.403647 CGTCTTGTTATCTCCCGTGCA 60.404 52.381 0.00 0.00 0.00 4.57
3436 6063 1.278238 CGTCTTGTTATCTCCCGTGC 58.722 55.000 0.00 0.00 0.00 5.34
3437 6064 1.470979 CCCGTCTTGTTATCTCCCGTG 60.471 57.143 0.00 0.00 0.00 4.94
3438 6065 0.822164 CCCGTCTTGTTATCTCCCGT 59.178 55.000 0.00 0.00 0.00 5.28
3439 6066 0.822164 ACCCGTCTTGTTATCTCCCG 59.178 55.000 0.00 0.00 0.00 5.14
3440 6067 3.345508 AAACCCGTCTTGTTATCTCCC 57.654 47.619 0.00 0.00 0.00 4.30
3459 6086 7.801752 ACAAAGAAAAACGAAATGCAGAAAAA 58.198 26.923 0.00 0.00 0.00 1.94
3460 6087 7.357951 ACAAAGAAAAACGAAATGCAGAAAA 57.642 28.000 0.00 0.00 0.00 2.29
3461 6088 6.959671 ACAAAGAAAAACGAAATGCAGAAA 57.040 29.167 0.00 0.00 0.00 2.52
3462 6089 6.367422 ACAACAAAGAAAAACGAAATGCAGAA 59.633 30.769 0.00 0.00 0.00 3.02
3463 6090 5.866633 ACAACAAAGAAAAACGAAATGCAGA 59.133 32.000 0.00 0.00 0.00 4.26
3464 6091 6.093532 ACAACAAAGAAAAACGAAATGCAG 57.906 33.333 0.00 0.00 0.00 4.41
3465 6092 6.073548 ACAACAACAAAGAAAAACGAAATGCA 60.074 30.769 0.00 0.00 0.00 3.96
3466 6093 6.303370 ACAACAACAAAGAAAAACGAAATGC 58.697 32.000 0.00 0.00 0.00 3.56
3467 6094 9.965748 AATACAACAACAAAGAAAAACGAAATG 57.034 25.926 0.00 0.00 0.00 2.32
3562 6189 8.848474 TTTACATGTTTTCTCCCAAACAAAAA 57.152 26.923 2.30 3.09 46.95 1.94
3563 6190 8.097662 ACTTTACATGTTTTCTCCCAAACAAAA 58.902 29.630 2.30 0.00 46.95 2.44
3564 6191 7.616313 ACTTTACATGTTTTCTCCCAAACAAA 58.384 30.769 2.30 0.00 46.95 2.83
3565 6192 7.176589 ACTTTACATGTTTTCTCCCAAACAA 57.823 32.000 2.30 0.00 46.95 2.83
3567 6194 8.487313 AAAACTTTACATGTTTTCTCCCAAAC 57.513 30.769 2.30 0.00 41.90 2.93
3595 6222 9.956640 AAATCTCATCTGAGTAGAATCAGTTTT 57.043 29.630 6.85 0.00 45.70 2.43
3596 6223 9.381033 CAAATCTCATCTGAGTAGAATCAGTTT 57.619 33.333 6.85 0.00 45.70 2.66
3597 6224 7.986320 CCAAATCTCATCTGAGTAGAATCAGTT 59.014 37.037 6.85 0.00 45.70 3.16
3598 6225 7.125507 ACCAAATCTCATCTGAGTAGAATCAGT 59.874 37.037 6.85 0.00 45.70 3.41
3599 6226 7.499292 ACCAAATCTCATCTGAGTAGAATCAG 58.501 38.462 7.07 0.54 46.70 2.90
3600 6227 7.124750 TGACCAAATCTCATCTGAGTAGAATCA 59.875 37.037 7.07 3.78 42.60 2.57
3601 6228 7.495901 TGACCAAATCTCATCTGAGTAGAATC 58.504 38.462 7.07 1.61 42.60 2.52
3602 6229 7.429374 TGACCAAATCTCATCTGAGTAGAAT 57.571 36.000 7.07 0.00 42.60 2.40
3603 6230 6.857437 TGACCAAATCTCATCTGAGTAGAA 57.143 37.500 7.07 0.00 42.60 2.10
3604 6231 6.857437 TTGACCAAATCTCATCTGAGTAGA 57.143 37.500 7.07 0.00 42.60 2.59
3605 6232 8.503458 AAATTGACCAAATCTCATCTGAGTAG 57.497 34.615 7.07 0.00 42.60 2.57
3606 6233 8.868522 AAAATTGACCAAATCTCATCTGAGTA 57.131 30.769 7.07 0.00 42.60 2.59
3607 6234 7.771927 AAAATTGACCAAATCTCATCTGAGT 57.228 32.000 7.07 0.00 42.60 3.41
3608 6235 8.301720 TCAAAAATTGACCAAATCTCATCTGAG 58.698 33.333 0.56 0.56 37.89 3.35
3609 6236 8.180706 TCAAAAATTGACCAAATCTCATCTGA 57.819 30.769 0.00 0.00 34.08 3.27
3610 6237 8.821147 TTCAAAAATTGACCAAATCTCATCTG 57.179 30.769 0.00 0.00 39.87 2.90
3613 6240 9.563748 ACATTTCAAAAATTGACCAAATCTCAT 57.436 25.926 0.00 0.00 39.87 2.90
3614 6241 8.961294 ACATTTCAAAAATTGACCAAATCTCA 57.039 26.923 0.00 0.00 39.87 3.27
3712 6339 9.542462 CCTCTCCGTGAGTCAAAAATATAAATA 57.458 33.333 0.00 0.00 41.11 1.40
3713 6340 7.499232 CCCTCTCCGTGAGTCAAAAATATAAAT 59.501 37.037 0.00 0.00 41.11 1.40
3714 6341 6.821665 CCCTCTCCGTGAGTCAAAAATATAAA 59.178 38.462 0.00 0.00 41.11 1.40
3715 6342 6.070424 ACCCTCTCCGTGAGTCAAAAATATAA 60.070 38.462 0.00 0.00 41.11 0.98
3716 6343 5.424252 ACCCTCTCCGTGAGTCAAAAATATA 59.576 40.000 0.00 0.00 41.11 0.86
3717 6344 4.225267 ACCCTCTCCGTGAGTCAAAAATAT 59.775 41.667 0.00 0.00 41.11 1.28
3718 6345 3.581332 ACCCTCTCCGTGAGTCAAAAATA 59.419 43.478 0.00 0.00 41.11 1.40
3719 6346 2.372172 ACCCTCTCCGTGAGTCAAAAAT 59.628 45.455 0.00 0.00 41.11 1.82
3720 6347 1.766496 ACCCTCTCCGTGAGTCAAAAA 59.234 47.619 0.00 0.00 41.11 1.94
3721 6348 1.070134 CACCCTCTCCGTGAGTCAAAA 59.930 52.381 0.00 0.00 41.11 2.44
3722 6349 0.679505 CACCCTCTCCGTGAGTCAAA 59.320 55.000 0.00 0.00 41.11 2.69
3723 6350 0.178973 TCACCCTCTCCGTGAGTCAA 60.179 55.000 0.00 0.00 41.11 3.18
3724 6351 0.039764 ATCACCCTCTCCGTGAGTCA 59.960 55.000 0.00 0.00 43.17 3.41
3725 6352 2.889200 ATCACCCTCTCCGTGAGTC 58.111 57.895 0.00 0.00 43.17 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.