Multiple sequence alignment - TraesCS5B01G078500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G078500 chr5B 100.000 3071 0 0 1774 4844 94386663 94389733 0.000000e+00 5672
1 TraesCS5B01G078500 chr5B 100.000 1462 0 0 1 1462 94384890 94386351 0.000000e+00 2700
2 TraesCS5B01G078500 chr5B 96.396 111 4 0 1 111 18077069 18076959 2.980000e-42 183
3 TraesCS5B01G078500 chr5D 95.557 1733 68 4 2758 4487 90000236 89998510 0.000000e+00 2765
4 TraesCS5B01G078500 chr5D 93.981 1163 42 8 313 1462 90002452 90001305 0.000000e+00 1735
5 TraesCS5B01G078500 chr5D 96.680 994 26 2 1774 2762 90001259 90000268 0.000000e+00 1646
6 TraesCS5B01G078500 chr5D 84.946 279 32 4 4566 4844 89998482 89998214 1.720000e-69 274
7 TraesCS5B01G078500 chr5A 93.936 1748 90 9 2758 4490 83631103 83629357 0.000000e+00 2627
8 TraesCS5B01G078500 chr5A 92.419 1174 58 14 313 1462 83633310 83632144 0.000000e+00 1646
9 TraesCS5B01G078500 chr5A 93.628 973 49 5 1793 2762 83632097 83631135 0.000000e+00 1441
10 TraesCS5B01G078500 chr5A 93.443 183 7 5 137 318 290391686 290391864 2.870000e-67 267
11 TraesCS5B01G078500 chr5A 94.915 118 4 2 1 118 508283762 508283647 2.980000e-42 183
12 TraesCS5B01G078500 chr6B 95.376 173 6 2 147 317 696483558 696483386 1.720000e-69 274
13 TraesCS5B01G078500 chr6B 94.068 118 6 1 1 117 172239738 172239621 1.390000e-40 178
14 TraesCS5B01G078500 chr4D 94.857 175 8 1 143 316 477898787 477898961 6.180000e-69 272
15 TraesCS5B01G078500 chr6D 93.407 182 10 2 148 327 392896972 392897153 7.990000e-68 268
16 TraesCS5B01G078500 chr6D 92.973 185 8 5 131 314 218383783 218383963 1.030000e-66 265
17 TraesCS5B01G078500 chr3D 93.855 179 9 2 137 314 79558718 79558541 7.990000e-68 268
18 TraesCS5B01G078500 chr3B 93.407 182 11 1 135 315 571752509 571752690 7.990000e-68 268
19 TraesCS5B01G078500 chr3B 92.935 184 10 2 132 314 655849404 655849585 1.030000e-66 265
20 TraesCS5B01G078500 chr2D 92.513 187 9 4 145 330 475088508 475088326 3.720000e-66 263
21 TraesCS5B01G078500 chr7B 96.396 111 4 0 1 111 133326628 133326738 2.980000e-42 183
22 TraesCS5B01G078500 chr7B 96.396 111 4 0 1 111 378358842 378358952 2.980000e-42 183
23 TraesCS5B01G078500 chr1D 96.396 111 4 0 1 111 368493704 368493814 2.980000e-42 183
24 TraesCS5B01G078500 chrUn 93.496 123 7 1 1 122 16890345 16890467 1.070000e-41 182
25 TraesCS5B01G078500 chr1B 94.828 116 4 2 1 115 625574708 625574594 3.850000e-41 180
26 TraesCS5B01G078500 chr1B 94.783 115 6 0 1 115 659726010 659725896 3.850000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G078500 chr5B 94384890 94389733 4843 False 4186.000000 5672 100.000000 1 4844 2 chr5B.!!$F1 4843
1 TraesCS5B01G078500 chr5D 89998214 90002452 4238 True 1605.000000 2765 92.791000 313 4844 4 chr5D.!!$R1 4531
2 TraesCS5B01G078500 chr5A 83629357 83633310 3953 True 1904.666667 2627 93.327667 313 4490 3 chr5A.!!$R2 4177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
633 637 0.108329 CGCCAAATCTGACGGTAGGT 60.108 55.0 0.00 0.0 0.00 3.08 F
937 941 0.179108 ATTTCGGAGGCTGCGACTAC 60.179 55.0 30.79 0.0 40.66 2.73 F
2470 2510 0.250513 GTAGGCAAGGTGGTCTCCAG 59.749 60.0 0.00 0.0 32.34 3.86 F
2933 3021 0.391661 TGCAAAGCACTCCTCGATCC 60.392 55.0 0.00 0.0 31.71 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2154 2194 1.067821 CTATGACCAAGGACGGCTCTC 59.932 57.143 0.00 0.0 0.00 3.20 R
2831 2912 0.958822 AACCAAGGCAACGTCCAATC 59.041 50.000 0.00 0.0 46.39 2.67 R
3580 3669 0.178998 AGTCGCCTCGCTATTCCCTA 60.179 55.000 0.00 0.0 0.00 3.53 R
4523 4626 0.179032 TACACACAGGCCACCACTTG 60.179 55.000 5.01 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
82 83 8.434589 ACATCCCTTTTTATTCATTTTGAGGA 57.565 30.769 0.00 0.00 0.00 3.71
83 84 8.314021 ACATCCCTTTTTATTCATTTTGAGGAC 58.686 33.333 0.00 0.00 0.00 3.85
84 85 7.847711 TCCCTTTTTATTCATTTTGAGGACA 57.152 32.000 0.00 0.00 0.00 4.02
85 86 8.256356 TCCCTTTTTATTCATTTTGAGGACAA 57.744 30.769 0.00 0.00 0.00 3.18
86 87 8.367156 TCCCTTTTTATTCATTTTGAGGACAAG 58.633 33.333 0.00 0.00 37.32 3.16
87 88 8.150296 CCCTTTTTATTCATTTTGAGGACAAGT 58.850 33.333 0.00 0.00 37.32 3.16
94 95 6.494893 TCATTTTGAGGACAAGTATTTCCG 57.505 37.500 0.00 0.00 36.95 4.30
95 96 5.414454 TCATTTTGAGGACAAGTATTTCCGG 59.586 40.000 0.00 0.00 36.95 5.14
96 97 4.627284 TTTGAGGACAAGTATTTCCGGA 57.373 40.909 0.00 0.00 36.95 5.14
97 98 4.837093 TTGAGGACAAGTATTTCCGGAT 57.163 40.909 4.15 0.00 36.95 4.18
98 99 4.137116 TGAGGACAAGTATTTCCGGATG 57.863 45.455 4.15 0.97 36.95 3.51
99 100 3.118408 TGAGGACAAGTATTTCCGGATGG 60.118 47.826 4.15 0.00 36.95 3.51
100 101 3.112263 AGGACAAGTATTTCCGGATGGA 58.888 45.455 4.15 0.00 44.61 3.41
101 102 9.894518 TTTGAGGACAAGTATTTCCGGATGGAG 62.895 44.444 4.15 0.00 40.39 3.86
115 116 6.887013 TCCGGATGGAGAGAGTACTATATAC 58.113 44.000 0.00 0.00 40.17 1.47
116 117 6.442885 TCCGGATGGAGAGAGTACTATATACA 59.557 42.308 0.00 0.00 40.17 2.29
117 118 6.539464 CCGGATGGAGAGAGTACTATATACAC 59.461 46.154 0.00 0.00 37.49 2.90
118 119 7.104290 CGGATGGAGAGAGTACTATATACACA 58.896 42.308 0.00 0.00 0.00 3.72
119 120 7.606839 CGGATGGAGAGAGTACTATATACACAA 59.393 40.741 0.00 0.00 0.00 3.33
120 121 8.732531 GGATGGAGAGAGTACTATATACACAAC 58.267 40.741 0.00 0.00 0.00 3.32
121 122 7.725818 TGGAGAGAGTACTATATACACAACG 57.274 40.000 0.00 0.00 0.00 4.10
122 123 7.278135 TGGAGAGAGTACTATATACACAACGT 58.722 38.462 0.00 0.00 0.00 3.99
123 124 8.424133 TGGAGAGAGTACTATATACACAACGTA 58.576 37.037 0.00 0.00 0.00 3.57
124 125 9.265901 GGAGAGAGTACTATATACACAACGTAA 57.734 37.037 0.00 0.00 32.59 3.18
160 161 5.226194 AGTACTGTATACTACTCCCTCCG 57.774 47.826 4.17 0.00 0.00 4.63
161 162 4.657969 AGTACTGTATACTACTCCCTCCGT 59.342 45.833 4.17 0.00 0.00 4.69
162 163 4.516652 ACTGTATACTACTCCCTCCGTT 57.483 45.455 4.17 0.00 0.00 4.44
163 164 4.459330 ACTGTATACTACTCCCTCCGTTC 58.541 47.826 4.17 0.00 0.00 3.95
164 165 3.819902 CTGTATACTACTCCCTCCGTTCC 59.180 52.174 4.17 0.00 0.00 3.62
165 166 3.461085 TGTATACTACTCCCTCCGTTCCT 59.539 47.826 4.17 0.00 0.00 3.36
166 167 4.660303 TGTATACTACTCCCTCCGTTCCTA 59.340 45.833 4.17 0.00 0.00 2.94
167 168 4.803329 ATACTACTCCCTCCGTTCCTAA 57.197 45.455 0.00 0.00 0.00 2.69
168 169 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
169 170 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
170 171 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
171 172 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
172 173 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
173 174 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
174 175 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
175 176 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
176 177 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
177 178 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
178 179 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
179 180 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
180 181 7.415206 CCCTCCGTTCCTAAATATTTGTCTTTG 60.415 40.741 11.05 0.00 0.00 2.77
181 182 7.120726 CCTCCGTTCCTAAATATTTGTCTTTGT 59.879 37.037 11.05 0.00 0.00 2.83
182 183 9.158233 CTCCGTTCCTAAATATTTGTCTTTGTA 57.842 33.333 11.05 0.00 0.00 2.41
183 184 9.675464 TCCGTTCCTAAATATTTGTCTTTGTAT 57.325 29.630 11.05 0.00 0.00 2.29
212 213 7.843490 TTTAACAAGTGACTACATATGGAGC 57.157 36.000 15.30 8.47 0.00 4.70
213 214 5.420725 AACAAGTGACTACATATGGAGCA 57.579 39.130 15.30 10.95 0.00 4.26
214 215 5.420725 ACAAGTGACTACATATGGAGCAA 57.579 39.130 15.30 0.16 0.00 3.91
215 216 5.804639 ACAAGTGACTACATATGGAGCAAA 58.195 37.500 15.30 0.00 0.00 3.68
216 217 6.237901 ACAAGTGACTACATATGGAGCAAAA 58.762 36.000 15.30 0.00 0.00 2.44
217 218 6.886459 ACAAGTGACTACATATGGAGCAAAAT 59.114 34.615 15.30 0.00 0.00 1.82
218 219 6.932356 AGTGACTACATATGGAGCAAAATG 57.068 37.500 15.30 0.00 0.00 2.32
219 220 6.653020 AGTGACTACATATGGAGCAAAATGA 58.347 36.000 15.30 0.00 0.00 2.57
220 221 6.765036 AGTGACTACATATGGAGCAAAATGAG 59.235 38.462 15.30 0.00 0.00 2.90
221 222 6.540189 GTGACTACATATGGAGCAAAATGAGT 59.460 38.462 15.30 0.00 0.00 3.41
222 223 6.539826 TGACTACATATGGAGCAAAATGAGTG 59.460 38.462 15.30 0.00 0.00 3.51
223 224 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
224 225 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
225 226 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
226 227 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
227 228 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
228 229 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
229 230 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
230 231 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
231 232 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
266 267 9.642343 ATGTCTATATATATCCGTATGTGGTGT 57.358 33.333 0.00 0.00 0.00 4.16
267 268 9.117183 TGTCTATATATATCCGTATGTGGTGTC 57.883 37.037 0.00 0.00 0.00 3.67
268 269 8.566260 GTCTATATATATCCGTATGTGGTGTCC 58.434 40.741 0.00 0.00 0.00 4.02
269 270 8.276477 TCTATATATATCCGTATGTGGTGTCCA 58.724 37.037 0.00 0.00 0.00 4.02
270 271 7.914427 ATATATATCCGTATGTGGTGTCCAT 57.086 36.000 0.00 0.00 35.28 3.41
271 272 4.974645 ATATCCGTATGTGGTGTCCATT 57.025 40.909 0.00 0.00 35.28 3.16
272 273 3.644966 ATCCGTATGTGGTGTCCATTT 57.355 42.857 0.00 0.00 35.28 2.32
273 274 2.705730 TCCGTATGTGGTGTCCATTTG 58.294 47.619 0.00 0.00 35.28 2.32
274 275 2.303311 TCCGTATGTGGTGTCCATTTGA 59.697 45.455 0.00 0.00 35.28 2.69
275 276 3.078097 CCGTATGTGGTGTCCATTTGAA 58.922 45.455 0.00 0.00 35.28 2.69
276 277 3.504134 CCGTATGTGGTGTCCATTTGAAA 59.496 43.478 0.00 0.00 35.28 2.69
277 278 4.157656 CCGTATGTGGTGTCCATTTGAAAT 59.842 41.667 0.00 0.00 35.28 2.17
278 279 5.331902 CGTATGTGGTGTCCATTTGAAATC 58.668 41.667 0.00 0.00 35.28 2.17
279 280 5.123820 CGTATGTGGTGTCCATTTGAAATCT 59.876 40.000 0.00 0.00 35.28 2.40
280 281 5.649782 ATGTGGTGTCCATTTGAAATCTC 57.350 39.130 0.00 0.00 35.28 2.75
281 282 4.728772 TGTGGTGTCCATTTGAAATCTCT 58.271 39.130 0.00 0.00 35.28 3.10
282 283 5.875224 TGTGGTGTCCATTTGAAATCTCTA 58.125 37.500 0.00 0.00 35.28 2.43
283 284 6.303054 TGTGGTGTCCATTTGAAATCTCTAA 58.697 36.000 0.00 0.00 35.28 2.10
284 285 6.775142 TGTGGTGTCCATTTGAAATCTCTAAA 59.225 34.615 0.00 0.00 35.28 1.85
285 286 7.286546 TGTGGTGTCCATTTGAAATCTCTAAAA 59.713 33.333 0.00 0.00 35.28 1.52
286 287 8.141268 GTGGTGTCCATTTGAAATCTCTAAAAA 58.859 33.333 0.00 0.00 35.28 1.94
287 288 8.359642 TGGTGTCCATTTGAAATCTCTAAAAAG 58.640 33.333 0.00 0.00 0.00 2.27
288 289 8.576442 GGTGTCCATTTGAAATCTCTAAAAAGA 58.424 33.333 0.00 0.00 0.00 2.52
289 290 9.399403 GTGTCCATTTGAAATCTCTAAAAAGAC 57.601 33.333 0.00 0.00 0.00 3.01
290 291 9.130661 TGTCCATTTGAAATCTCTAAAAAGACA 57.869 29.630 0.00 0.00 29.75 3.41
291 292 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
308 309 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
309 310 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
310 311 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
311 312 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
497 498 0.249447 CGCTGACTTGACCACTGACA 60.249 55.000 0.00 0.00 0.00 3.58
512 514 1.668151 GACAACTGGCTGGTCGACC 60.668 63.158 28.17 28.17 0.00 4.79
556 558 2.202797 CCACCAGATGAGGACGCG 60.203 66.667 3.53 3.53 0.00 6.01
581 583 1.977009 AGTCAGCGTCCGGTCATCA 60.977 57.895 0.00 0.00 0.00 3.07
593 595 3.743017 TCATCAGGGGGCAAGGGC 61.743 66.667 0.00 0.00 40.13 5.19
633 637 0.108329 CGCCAAATCTGACGGTAGGT 60.108 55.000 0.00 0.00 0.00 3.08
659 663 4.394920 TCGCCACTGTCTTTTAATGGAATC 59.605 41.667 0.00 0.00 31.69 2.52
792 796 1.410882 CCATCGGTTTGGGTTGTTGTT 59.589 47.619 0.00 0.00 32.80 2.83
799 803 1.938585 TTGGGTTGTTGTTTGGTGGA 58.061 45.000 0.00 0.00 0.00 4.02
813 817 0.949105 GGTGGAAAGAAGCGAGCGAA 60.949 55.000 0.00 0.00 0.00 4.70
918 922 1.361668 GCTGCGATCTTGGCGAGAAA 61.362 55.000 8.86 0.00 38.06 2.52
937 941 0.179108 ATTTCGGAGGCTGCGACTAC 60.179 55.000 30.79 0.00 40.66 2.73
938 942 2.221906 TTTCGGAGGCTGCGACTACC 62.222 60.000 30.79 3.01 40.66 3.18
939 943 4.554363 CGGAGGCTGCGACTACCG 62.554 72.222 24.84 8.52 42.21 4.02
940 944 3.138798 GGAGGCTGCGACTACCGA 61.139 66.667 0.00 0.00 41.76 4.69
941 945 2.102553 GAGGCTGCGACTACCGAC 59.897 66.667 0.00 0.00 41.76 4.79
942 946 2.361357 AGGCTGCGACTACCGACT 60.361 61.111 0.00 0.00 41.76 4.18
943 947 1.077930 AGGCTGCGACTACCGACTA 60.078 57.895 0.00 0.00 41.76 2.59
947 951 2.159544 GGCTGCGACTACCGACTATATC 60.160 54.545 0.00 0.00 41.76 1.63
1378 1387 8.946085 TGTAAGTAATTTGCTGAAATGGACTAG 58.054 33.333 0.00 0.00 32.24 2.57
1423 1456 9.472361 TTCTACACATGTTTCTCAAAGTAGTAC 57.528 33.333 12.68 0.00 34.02 2.73
1459 1496 5.605534 CCAAATGTCATGGTGGTTTGTTTA 58.394 37.500 7.40 0.00 33.08 2.01
1837 1874 3.306502 CCAAATGGCCTAATGATGGATGC 60.307 47.826 3.32 0.00 0.00 3.91
1919 1956 7.653767 ATGTTCTCTAGTTAAACCGAGTTTG 57.346 36.000 10.95 0.00 36.37 2.93
1929 1966 4.320608 AAACCGAGTTTGCACATTCATT 57.679 36.364 0.00 0.00 34.23 2.57
2069 2109 0.609131 AAGGGGACATGGCTCAAACG 60.609 55.000 0.00 0.00 0.00 3.60
2254 2294 0.806492 CGAGGCGGTAAGAAAGGAGC 60.806 60.000 0.00 0.00 0.00 4.70
2470 2510 0.250513 GTAGGCAAGGTGGTCTCCAG 59.749 60.000 0.00 0.00 32.34 3.86
2526 2566 1.889105 ATAGCATGCCCGCAAGACG 60.889 57.895 15.66 0.00 43.15 4.18
2598 2643 6.406400 CCTGGTCCTAGTCTCTTGTAATTCAG 60.406 46.154 0.00 0.00 0.00 3.02
2764 2845 7.502120 AAACTCCATCCTGAAATTGATATCG 57.498 36.000 0.00 0.00 0.00 2.92
2775 2856 7.814587 CCTGAAATTGATATCGCATGTACTAGA 59.185 37.037 0.00 0.00 0.00 2.43
2831 2912 7.550551 TCAGATAAAGGCAACAGTCTAATTCTG 59.449 37.037 0.00 0.00 41.41 3.02
2866 2947 5.414454 GCCTTGGTTTCATGTTCAGTATACA 59.586 40.000 5.50 0.00 0.00 2.29
2933 3021 0.391661 TGCAAAGCACTCCTCGATCC 60.392 55.000 0.00 0.00 31.71 3.36
3077 3165 2.362397 GTTAGTCGATCTCATCTGGGCA 59.638 50.000 0.00 0.00 0.00 5.36
3209 3297 3.750130 GCTTTCACAGTGACAGTCATGAT 59.250 43.478 16.47 0.00 0.00 2.45
3303 3391 2.089980 CTGAATTTGCCAGAGACCCTG 58.910 52.381 0.00 0.00 42.55 4.45
3444 3532 2.432628 GGGAGCAGTTGACCGACG 60.433 66.667 0.00 0.00 0.00 5.12
3580 3669 2.102757 TGTGTGGAAAATGCATGTGCTT 59.897 40.909 0.00 0.00 42.66 3.91
3738 3827 5.932303 GCTCTACCTTGATAGTCACAAACAA 59.068 40.000 0.00 0.00 0.00 2.83
3741 3830 7.152645 TCTACCTTGATAGTCACAAACAAGAC 58.847 38.462 0.00 0.00 39.84 3.01
3750 3839 0.169230 ACAAACAAGACGCGCAAACA 59.831 45.000 5.73 0.00 0.00 2.83
3760 3849 1.528248 CGCGCAAACAAAGTTCGGTG 61.528 55.000 8.75 0.00 0.00 4.94
3801 3890 0.393673 CCAATGCACCGGTGGACATA 60.394 55.000 34.58 5.73 34.05 2.29
3810 3899 0.600255 CGGTGGACATATTCTCGCCC 60.600 60.000 0.00 0.00 0.00 6.13
3906 3995 5.105513 TGAAAGGAAAAGGAACAAACCAGAC 60.106 40.000 0.00 0.00 0.00 3.51
3962 4051 7.307694 CACATCTTTTTGTGCATATACTGTGT 58.692 34.615 0.00 0.00 40.45 3.72
3965 4054 6.667370 TCTTTTTGTGCATATACTGTGTGTG 58.333 36.000 0.00 0.00 0.00 3.82
3967 4056 5.355467 TTTGTGCATATACTGTGTGTGTG 57.645 39.130 3.52 0.00 0.00 3.82
3976 4065 7.904977 GCATATACTGTGTGTGTGTAATCAAAG 59.095 37.037 3.52 0.00 0.00 2.77
4055 4144 5.984233 TTGTGTATCGGTTATGCAAGATC 57.016 39.130 0.00 0.00 31.46 2.75
4067 4156 3.008835 TGCAAGATCAGATTCCCCAAG 57.991 47.619 0.00 0.00 0.00 3.61
4135 4224 1.947013 CATGCATCGCAAGCTAGGG 59.053 57.895 0.00 0.00 43.62 3.53
4193 4282 1.619363 TGGGTCCAGGATTCCAGGG 60.619 63.158 13.74 10.23 30.56 4.45
4195 4284 2.386935 GGTCCAGGATTCCAGGGGG 61.387 68.421 13.74 5.50 30.56 5.40
4228 4317 5.860182 CACAAGATTGCTTAGATTTGTGTGG 59.140 40.000 6.92 0.00 40.06 4.17
4229 4318 5.047802 ACAAGATTGCTTAGATTTGTGTGGG 60.048 40.000 0.00 0.00 31.81 4.61
4230 4319 3.445096 AGATTGCTTAGATTTGTGTGGGC 59.555 43.478 0.00 0.00 0.00 5.36
4231 4320 1.164411 TGCTTAGATTTGTGTGGGCG 58.836 50.000 0.00 0.00 0.00 6.13
4232 4321 0.179163 GCTTAGATTTGTGTGGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
4233 4322 1.453155 CTTAGATTTGTGTGGGCGCT 58.547 50.000 7.64 0.00 0.00 5.92
4236 4325 0.324943 AGATTTGTGTGGGCGCTAGT 59.675 50.000 7.64 0.00 0.00 2.57
4250 4348 3.365164 GGCGCTAGTACTAGTGTAGCATC 60.365 52.174 33.17 20.53 43.55 3.91
4386 4486 9.424319 CTTGCTTGAGTAGAGTGTTATTCTTTA 57.576 33.333 0.00 0.00 0.00 1.85
4410 4510 5.297029 ACTTTTTCAAGTCAAGTAGAGTGCC 59.703 40.000 0.00 0.00 39.15 5.01
4463 4566 3.530928 ATATCCCATGTCCCAATGGTG 57.469 47.619 0.00 0.00 44.93 4.17
4490 4593 1.544724 ATTGCGGCCTGTGTGTAATT 58.455 45.000 0.00 0.00 0.00 1.40
4491 4594 0.595588 TTGCGGCCTGTGTGTAATTG 59.404 50.000 0.00 0.00 0.00 2.32
4492 4595 0.536233 TGCGGCCTGTGTGTAATTGT 60.536 50.000 0.00 0.00 0.00 2.71
4493 4596 0.596082 GCGGCCTGTGTGTAATTGTT 59.404 50.000 0.00 0.00 0.00 2.83
4494 4597 1.401018 GCGGCCTGTGTGTAATTGTTC 60.401 52.381 0.00 0.00 0.00 3.18
4495 4598 1.876799 CGGCCTGTGTGTAATTGTTCA 59.123 47.619 0.00 0.00 0.00 3.18
4496 4599 2.487762 CGGCCTGTGTGTAATTGTTCAT 59.512 45.455 0.00 0.00 0.00 2.57
4497 4600 3.057596 CGGCCTGTGTGTAATTGTTCATT 60.058 43.478 0.00 0.00 0.00 2.57
4498 4601 4.236935 GGCCTGTGTGTAATTGTTCATTG 58.763 43.478 0.00 0.00 0.00 2.82
4499 4602 4.261994 GGCCTGTGTGTAATTGTTCATTGT 60.262 41.667 0.00 0.00 0.00 2.71
4500 4603 4.917415 GCCTGTGTGTAATTGTTCATTGTC 59.083 41.667 0.00 0.00 0.00 3.18
4501 4604 5.278463 GCCTGTGTGTAATTGTTCATTGTCT 60.278 40.000 0.00 0.00 0.00 3.41
4502 4605 6.735694 GCCTGTGTGTAATTGTTCATTGTCTT 60.736 38.462 0.00 0.00 0.00 3.01
4503 4606 7.202526 CCTGTGTGTAATTGTTCATTGTCTTT 58.797 34.615 0.00 0.00 0.00 2.52
4504 4607 7.379529 CCTGTGTGTAATTGTTCATTGTCTTTC 59.620 37.037 0.00 0.00 0.00 2.62
4505 4608 7.766283 TGTGTGTAATTGTTCATTGTCTTTCA 58.234 30.769 0.00 0.00 0.00 2.69
4506 4609 8.412456 TGTGTGTAATTGTTCATTGTCTTTCAT 58.588 29.630 0.00 0.00 0.00 2.57
4507 4610 9.891828 GTGTGTAATTGTTCATTGTCTTTCATA 57.108 29.630 0.00 0.00 0.00 2.15
4516 4619 9.109393 TGTTCATTGTCTTTCATATAGCTTACC 57.891 33.333 0.00 0.00 0.00 2.85
4517 4620 9.109393 GTTCATTGTCTTTCATATAGCTTACCA 57.891 33.333 0.00 0.00 0.00 3.25
4518 4621 8.662781 TCATTGTCTTTCATATAGCTTACCAC 57.337 34.615 0.00 0.00 0.00 4.16
4519 4622 8.486210 TCATTGTCTTTCATATAGCTTACCACT 58.514 33.333 0.00 0.00 0.00 4.00
4520 4623 9.113838 CATTGTCTTTCATATAGCTTACCACTT 57.886 33.333 0.00 0.00 0.00 3.16
4521 4624 8.492673 TTGTCTTTCATATAGCTTACCACTTG 57.507 34.615 0.00 0.00 0.00 3.16
4522 4625 6.538742 TGTCTTTCATATAGCTTACCACTTGC 59.461 38.462 0.00 0.00 0.00 4.01
4523 4626 6.017852 GTCTTTCATATAGCTTACCACTTGCC 60.018 42.308 0.00 0.00 0.00 4.52
4524 4627 5.366482 TTCATATAGCTTACCACTTGCCA 57.634 39.130 0.00 0.00 0.00 4.92
4525 4628 5.366482 TCATATAGCTTACCACTTGCCAA 57.634 39.130 0.00 0.00 0.00 4.52
4526 4629 5.368145 TCATATAGCTTACCACTTGCCAAG 58.632 41.667 2.11 2.11 0.00 3.61
4527 4630 3.721087 ATAGCTTACCACTTGCCAAGT 57.279 42.857 3.74 3.74 44.06 3.16
4539 4642 2.195683 CCAAGTGGTGGCCTGTGT 59.804 61.111 3.32 0.00 41.72 3.72
4540 4643 2.195567 CCAAGTGGTGGCCTGTGTG 61.196 63.158 3.32 0.00 41.72 3.82
4541 4644 1.453745 CAAGTGGTGGCCTGTGTGT 60.454 57.895 3.32 0.00 0.00 3.72
4542 4645 0.179032 CAAGTGGTGGCCTGTGTGTA 60.179 55.000 3.32 0.00 0.00 2.90
4543 4646 0.548989 AAGTGGTGGCCTGTGTGTAA 59.451 50.000 3.32 0.00 0.00 2.41
4544 4647 0.771127 AGTGGTGGCCTGTGTGTAAT 59.229 50.000 3.32 0.00 0.00 1.89
4545 4648 1.165270 GTGGTGGCCTGTGTGTAATC 58.835 55.000 3.32 0.00 0.00 1.75
4546 4649 1.064003 TGGTGGCCTGTGTGTAATCT 58.936 50.000 3.32 0.00 0.00 2.40
4547 4650 1.271325 TGGTGGCCTGTGTGTAATCTG 60.271 52.381 3.32 0.00 0.00 2.90
4548 4651 1.453155 GTGGCCTGTGTGTAATCTGG 58.547 55.000 3.32 0.00 0.00 3.86
4553 4656 3.146066 GCCTGTGTGTAATCTGGTTTCA 58.854 45.455 0.00 0.00 0.00 2.69
4562 4665 7.491048 GTGTGTAATCTGGTTTCACAAATTTGT 59.509 33.333 18.13 18.13 45.64 2.83
4589 4700 4.037858 CAATAGGGTGAAATTGCTCAGC 57.962 45.455 0.00 0.00 41.99 4.26
4593 4704 0.813821 GGTGAAATTGCTCAGCCTCC 59.186 55.000 0.00 0.00 37.77 4.30
4596 4707 1.203038 TGAAATTGCTCAGCCTCCCAA 60.203 47.619 0.00 0.00 0.00 4.12
4616 4727 3.164026 GCACAGCCATGAGTCATGA 57.836 52.632 30.63 0.00 43.81 3.07
4617 4728 1.456296 GCACAGCCATGAGTCATGAA 58.544 50.000 30.63 0.00 43.81 2.57
4618 4729 1.131883 GCACAGCCATGAGTCATGAAC 59.868 52.381 30.63 22.02 43.81 3.18
4620 4731 2.418976 CACAGCCATGAGTCATGAACAG 59.581 50.000 30.63 20.86 43.81 3.16
4621 4732 1.400846 CAGCCATGAGTCATGAACAGC 59.599 52.381 30.63 24.17 43.81 4.40
4622 4733 1.281287 AGCCATGAGTCATGAACAGCT 59.719 47.619 30.63 25.73 43.81 4.24
4623 4734 1.400846 GCCATGAGTCATGAACAGCTG 59.599 52.381 30.63 13.48 43.81 4.24
4624 4735 2.708051 CCATGAGTCATGAACAGCTGT 58.292 47.619 30.63 15.25 43.81 4.40
4625 4736 2.418976 CCATGAGTCATGAACAGCTGTG 59.581 50.000 30.63 8.03 43.81 3.66
4626 4737 3.332034 CATGAGTCATGAACAGCTGTGA 58.668 45.455 26.07 10.62 43.81 3.58
4627 4738 3.690475 TGAGTCATGAACAGCTGTGAT 57.310 42.857 22.49 12.95 0.00 3.06
4628 4739 3.332034 TGAGTCATGAACAGCTGTGATG 58.668 45.455 22.49 23.47 0.00 3.07
4633 4744 0.473755 TGAACAGCTGTGATGGTGGT 59.526 50.000 22.49 0.61 39.48 4.16
4637 4748 0.518636 CAGCTGTGATGGTGGTTTCG 59.481 55.000 5.25 0.00 0.00 3.46
4641 4752 2.870435 GCTGTGATGGTGGTTTCGTAGT 60.870 50.000 0.00 0.00 0.00 2.73
4648 4759 1.084289 GTGGTTTCGTAGTGGGCATC 58.916 55.000 0.00 0.00 0.00 3.91
4656 4767 1.931172 CGTAGTGGGCATCGTTTTAGG 59.069 52.381 0.00 0.00 0.00 2.69
4659 4770 2.981898 AGTGGGCATCGTTTTAGGTAC 58.018 47.619 0.00 0.00 0.00 3.34
4660 4771 2.303600 AGTGGGCATCGTTTTAGGTACA 59.696 45.455 0.00 0.00 0.00 2.90
4661 4772 2.417586 GTGGGCATCGTTTTAGGTACAC 59.582 50.000 0.00 0.00 0.00 2.90
4662 4773 2.038689 TGGGCATCGTTTTAGGTACACA 59.961 45.455 0.00 0.00 0.00 3.72
4663 4774 2.417586 GGGCATCGTTTTAGGTACACAC 59.582 50.000 0.00 0.00 0.00 3.82
4664 4775 3.332034 GGCATCGTTTTAGGTACACACT 58.668 45.455 0.00 0.00 0.00 3.55
4667 4778 4.817517 CATCGTTTTAGGTACACACTCCT 58.182 43.478 0.00 0.00 37.80 3.69
4670 4781 5.072741 TCGTTTTAGGTACACACTCCTAGT 58.927 41.667 0.00 0.00 37.57 2.57
4685 4796 5.066246 CACTCCTAGTAGGTCTACTTTTCCG 59.934 48.000 16.02 4.89 43.35 4.30
4690 4801 6.482973 CCTAGTAGGTCTACTTTTCCGTCTAG 59.517 46.154 14.85 4.47 43.35 2.43
4700 4811 9.204570 TCTACTTTTCCGTCTAGAAAATCTTTG 57.795 33.333 0.00 0.00 43.02 2.77
4713 4824 6.536447 AGAAAATCTTTGCAAACATCCCAAT 58.464 32.000 8.05 0.00 0.00 3.16
4716 4827 4.952071 TCTTTGCAAACATCCCAATCAA 57.048 36.364 8.05 0.00 0.00 2.57
4725 4836 5.835113 AACATCCCAATCAAATCCTAACG 57.165 39.130 0.00 0.00 0.00 3.18
4748 4859 5.643777 CGAAGTATCAACAGTTTTGGAGGAT 59.356 40.000 0.00 0.00 0.00 3.24
4750 4861 6.126863 AGTATCAACAGTTTTGGAGGATCA 57.873 37.500 0.00 0.00 36.25 2.92
4772 4883 1.608590 GCAGGCAACACACTACAACAT 59.391 47.619 0.00 0.00 41.41 2.71
4778 4889 3.490761 GCAACACACTACAACATTTGCCT 60.491 43.478 0.00 0.00 33.36 4.75
4781 4892 3.502211 ACACACTACAACATTTGCCTAGC 59.498 43.478 0.00 0.00 0.00 3.42
4788 4899 3.108144 CAACATTTGCCTAGCGTAATGC 58.892 45.455 11.73 0.00 46.98 3.56
4819 4930 4.344359 TTTGGTTTTGGATTTAGCACCC 57.656 40.909 0.00 0.00 0.00 4.61
4838 4949 3.256936 GCAGAGCAATGCGTGTCA 58.743 55.556 11.30 0.00 36.28 3.58
4839 4950 1.154338 GCAGAGCAATGCGTGTCAC 60.154 57.895 11.30 0.00 36.28 3.67
4841 4952 0.587768 CAGAGCAATGCGTGTCACAA 59.412 50.000 3.42 0.00 0.00 3.33
4842 4953 0.870393 AGAGCAATGCGTGTCACAAG 59.130 50.000 3.42 0.00 0.00 3.16
4843 4954 0.867746 GAGCAATGCGTGTCACAAGA 59.132 50.000 3.42 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.540538 TCCTCAAAATGAATAAAAAGGGATGTA 57.459 29.630 0.00 0.00 0.00 2.29
57 58 8.314021 GTCCTCAAAATGAATAAAAAGGGATGT 58.686 33.333 0.00 0.00 0.00 3.06
58 59 8.313292 TGTCCTCAAAATGAATAAAAAGGGATG 58.687 33.333 0.00 0.00 0.00 3.51
59 60 8.434589 TGTCCTCAAAATGAATAAAAAGGGAT 57.565 30.769 0.00 0.00 0.00 3.85
60 61 7.847711 TGTCCTCAAAATGAATAAAAAGGGA 57.152 32.000 0.00 0.00 0.00 4.20
61 62 8.150296 ACTTGTCCTCAAAATGAATAAAAAGGG 58.850 33.333 0.00 0.00 32.87 3.95
68 69 8.673711 CGGAAATACTTGTCCTCAAAATGAATA 58.326 33.333 0.00 0.00 32.87 1.75
69 70 7.362920 CCGGAAATACTTGTCCTCAAAATGAAT 60.363 37.037 0.00 0.00 32.87 2.57
70 71 6.072175 CCGGAAATACTTGTCCTCAAAATGAA 60.072 38.462 0.00 0.00 32.87 2.57
71 72 5.414454 CCGGAAATACTTGTCCTCAAAATGA 59.586 40.000 0.00 0.00 32.87 2.57
72 73 5.414454 TCCGGAAATACTTGTCCTCAAAATG 59.586 40.000 0.00 0.00 32.87 2.32
73 74 5.566469 TCCGGAAATACTTGTCCTCAAAAT 58.434 37.500 0.00 0.00 32.87 1.82
74 75 4.975631 TCCGGAAATACTTGTCCTCAAAA 58.024 39.130 0.00 0.00 32.87 2.44
75 76 4.627284 TCCGGAAATACTTGTCCTCAAA 57.373 40.909 0.00 0.00 32.87 2.69
76 77 4.513442 CATCCGGAAATACTTGTCCTCAA 58.487 43.478 9.01 0.00 0.00 3.02
77 78 3.118408 CCATCCGGAAATACTTGTCCTCA 60.118 47.826 9.01 0.00 0.00 3.86
78 79 3.134081 TCCATCCGGAAATACTTGTCCTC 59.866 47.826 9.01 0.00 38.83 3.71
79 80 3.112263 TCCATCCGGAAATACTTGTCCT 58.888 45.455 9.01 0.00 38.83 3.85
80 81 3.134081 TCTCCATCCGGAAATACTTGTCC 59.866 47.826 9.01 0.00 42.21 4.02
81 82 4.099573 TCTCTCCATCCGGAAATACTTGTC 59.900 45.833 9.01 0.00 42.21 3.18
82 83 4.030913 TCTCTCCATCCGGAAATACTTGT 58.969 43.478 9.01 0.00 42.21 3.16
83 84 4.100189 ACTCTCTCCATCCGGAAATACTTG 59.900 45.833 9.01 0.00 42.21 3.16
84 85 4.290942 ACTCTCTCCATCCGGAAATACTT 58.709 43.478 9.01 0.00 42.21 2.24
85 86 3.917300 ACTCTCTCCATCCGGAAATACT 58.083 45.455 9.01 0.00 42.21 2.12
86 87 4.828387 AGTACTCTCTCCATCCGGAAATAC 59.172 45.833 9.01 0.00 42.21 1.89
87 88 5.063017 AGTACTCTCTCCATCCGGAAATA 57.937 43.478 9.01 0.00 42.21 1.40
88 89 3.917300 AGTACTCTCTCCATCCGGAAAT 58.083 45.455 9.01 0.00 42.21 2.17
89 90 3.383698 AGTACTCTCTCCATCCGGAAA 57.616 47.619 9.01 0.00 42.21 3.13
90 91 4.726035 ATAGTACTCTCTCCATCCGGAA 57.274 45.455 9.01 0.00 42.21 4.30
91 92 6.442885 TGTATATAGTACTCTCTCCATCCGGA 59.557 42.308 6.61 6.61 39.79 5.14
92 93 6.539464 GTGTATATAGTACTCTCTCCATCCGG 59.461 46.154 0.00 0.00 0.00 5.14
93 94 7.104290 TGTGTATATAGTACTCTCTCCATCCG 58.896 42.308 0.00 0.00 0.00 4.18
94 95 8.732531 GTTGTGTATATAGTACTCTCTCCATCC 58.267 40.741 0.00 0.00 0.00 3.51
95 96 8.444715 CGTTGTGTATATAGTACTCTCTCCATC 58.555 40.741 0.00 0.00 0.00 3.51
96 97 7.937942 ACGTTGTGTATATAGTACTCTCTCCAT 59.062 37.037 0.00 0.00 0.00 3.41
97 98 7.278135 ACGTTGTGTATATAGTACTCTCTCCA 58.722 38.462 0.00 0.00 0.00 3.86
98 99 7.727331 ACGTTGTGTATATAGTACTCTCTCC 57.273 40.000 0.00 0.00 0.00 3.71
134 135 7.882271 CGGAGGGAGTAGTATACAGTACTTAAT 59.118 40.741 5.50 0.00 46.26 1.40
135 136 7.147479 ACGGAGGGAGTAGTATACAGTACTTAA 60.147 40.741 5.50 0.00 46.26 1.85
136 137 6.327626 ACGGAGGGAGTAGTATACAGTACTTA 59.672 42.308 5.50 0.00 46.26 2.24
137 138 5.131809 ACGGAGGGAGTAGTATACAGTACTT 59.868 44.000 5.50 0.00 46.26 2.24
138 139 4.657969 ACGGAGGGAGTAGTATACAGTACT 59.342 45.833 5.50 5.13 46.26 2.73
139 140 4.967036 ACGGAGGGAGTAGTATACAGTAC 58.033 47.826 5.50 0.00 46.26 2.73
140 141 5.455326 GGAACGGAGGGAGTAGTATACAGTA 60.455 48.000 5.50 0.00 46.26 2.74
141 142 4.459330 GAACGGAGGGAGTAGTATACAGT 58.541 47.826 5.50 0.00 46.26 3.55
142 143 3.819902 GGAACGGAGGGAGTAGTATACAG 59.180 52.174 5.50 0.00 46.26 2.74
143 144 3.461085 AGGAACGGAGGGAGTAGTATACA 59.539 47.826 5.50 0.00 46.26 2.29
144 145 4.097551 AGGAACGGAGGGAGTAGTATAC 57.902 50.000 0.00 0.00 43.47 1.47
145 146 5.912149 TTAGGAACGGAGGGAGTAGTATA 57.088 43.478 0.00 0.00 0.00 1.47
146 147 4.803329 TTAGGAACGGAGGGAGTAGTAT 57.197 45.455 0.00 0.00 0.00 2.12
147 148 4.591321 TTTAGGAACGGAGGGAGTAGTA 57.409 45.455 0.00 0.00 0.00 1.82
148 149 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
149 150 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
150 151 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
151 152 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
152 153 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
153 154 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
154 155 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
155 156 7.120726 ACAAAGACAAATATTTAGGAACGGAGG 59.879 37.037 0.00 0.00 0.00 4.30
156 157 8.040716 ACAAAGACAAATATTTAGGAACGGAG 57.959 34.615 0.00 0.00 0.00 4.63
157 158 7.989416 ACAAAGACAAATATTTAGGAACGGA 57.011 32.000 0.00 0.00 0.00 4.69
186 187 8.893727 GCTCCATATGTAGTCACTTGTTAAAAT 58.106 33.333 1.24 0.00 0.00 1.82
187 188 7.880713 TGCTCCATATGTAGTCACTTGTTAAAA 59.119 33.333 1.24 0.00 0.00 1.52
188 189 7.390823 TGCTCCATATGTAGTCACTTGTTAAA 58.609 34.615 1.24 0.00 0.00 1.52
189 190 6.941857 TGCTCCATATGTAGTCACTTGTTAA 58.058 36.000 1.24 0.00 0.00 2.01
190 191 6.538945 TGCTCCATATGTAGTCACTTGTTA 57.461 37.500 1.24 0.00 0.00 2.41
191 192 5.420725 TGCTCCATATGTAGTCACTTGTT 57.579 39.130 1.24 0.00 0.00 2.83
192 193 5.420725 TTGCTCCATATGTAGTCACTTGT 57.579 39.130 1.24 0.00 0.00 3.16
193 194 6.741992 TTTTGCTCCATATGTAGTCACTTG 57.258 37.500 1.24 0.00 0.00 3.16
194 195 7.112122 TCATTTTGCTCCATATGTAGTCACTT 58.888 34.615 1.24 0.00 0.00 3.16
195 196 6.653020 TCATTTTGCTCCATATGTAGTCACT 58.347 36.000 1.24 0.00 0.00 3.41
196 197 6.540189 ACTCATTTTGCTCCATATGTAGTCAC 59.460 38.462 1.24 0.00 0.00 3.67
197 198 6.539826 CACTCATTTTGCTCCATATGTAGTCA 59.460 38.462 1.24 0.00 0.00 3.41
198 199 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
199 200 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
200 201 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
201 202 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
202 203 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
203 204 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
204 205 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
205 206 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
206 207 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
207 208 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
208 209 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
209 210 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
210 211 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
211 212 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
240 241 9.642343 ACACCACATACGGATATATATAGACAT 57.358 33.333 0.00 0.00 0.00 3.06
241 242 9.117183 GACACCACATACGGATATATATAGACA 57.883 37.037 0.00 0.00 0.00 3.41
242 243 8.566260 GGACACCACATACGGATATATATAGAC 58.434 40.741 0.00 0.00 0.00 2.59
243 244 8.276477 TGGACACCACATACGGATATATATAGA 58.724 37.037 0.00 0.00 0.00 1.98
244 245 8.459911 TGGACACCACATACGGATATATATAG 57.540 38.462 0.00 0.00 0.00 1.31
245 246 9.429109 AATGGACACCACATACGGATATATATA 57.571 33.333 0.00 0.00 35.80 0.86
246 247 7.914427 ATGGACACCACATACGGATATATAT 57.086 36.000 0.00 0.00 35.80 0.86
247 248 7.727578 AATGGACACCACATACGGATATATA 57.272 36.000 0.00 0.00 35.80 0.86
248 249 6.620877 AATGGACACCACATACGGATATAT 57.379 37.500 0.00 0.00 35.80 0.86
249 250 6.042208 TCAAATGGACACCACATACGGATATA 59.958 38.462 0.00 0.00 35.80 0.86
250 251 4.974645 AATGGACACCACATACGGATAT 57.025 40.909 0.00 0.00 35.80 1.63
251 252 4.162509 TCAAATGGACACCACATACGGATA 59.837 41.667 0.00 0.00 35.80 2.59
252 253 3.054728 TCAAATGGACACCACATACGGAT 60.055 43.478 0.00 0.00 35.80 4.18
253 254 2.303311 TCAAATGGACACCACATACGGA 59.697 45.455 0.00 0.00 35.80 4.69
254 255 2.705730 TCAAATGGACACCACATACGG 58.294 47.619 0.00 0.00 35.80 4.02
255 256 4.757799 TTTCAAATGGACACCACATACG 57.242 40.909 0.00 0.00 35.80 3.06
256 257 6.375455 AGAGATTTCAAATGGACACCACATAC 59.625 38.462 0.00 0.00 35.80 2.39
257 258 6.484288 AGAGATTTCAAATGGACACCACATA 58.516 36.000 0.00 0.00 35.80 2.29
258 259 5.327732 AGAGATTTCAAATGGACACCACAT 58.672 37.500 0.00 0.00 35.80 3.21
259 260 4.728772 AGAGATTTCAAATGGACACCACA 58.271 39.130 0.00 0.00 35.80 4.17
260 261 6.817765 TTAGAGATTTCAAATGGACACCAC 57.182 37.500 0.00 0.00 35.80 4.16
261 262 7.831691 TTTTAGAGATTTCAAATGGACACCA 57.168 32.000 0.00 0.00 38.19 4.17
262 263 8.576442 TCTTTTTAGAGATTTCAAATGGACACC 58.424 33.333 0.00 0.00 0.00 4.16
263 264 9.399403 GTCTTTTTAGAGATTTCAAATGGACAC 57.601 33.333 0.00 0.00 0.00 3.67
264 265 9.130661 TGTCTTTTTAGAGATTTCAAATGGACA 57.869 29.630 0.00 0.00 0.00 4.02
265 266 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
282 283 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
283 284 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
284 285 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
285 286 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
286 287 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
287 288 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
288 289 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
289 290 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
290 291 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
291 292 6.785963 TCATACTCCCTCCGTTCCTAAATATT 59.214 38.462 0.00 0.00 0.00 1.28
292 293 6.320518 TCATACTCCCTCCGTTCCTAAATAT 58.679 40.000 0.00 0.00 0.00 1.28
293 294 5.708544 TCATACTCCCTCCGTTCCTAAATA 58.291 41.667 0.00 0.00 0.00 1.40
294 295 4.553678 TCATACTCCCTCCGTTCCTAAAT 58.446 43.478 0.00 0.00 0.00 1.40
295 296 3.985127 TCATACTCCCTCCGTTCCTAAA 58.015 45.455 0.00 0.00 0.00 1.85
296 297 3.675348 TCATACTCCCTCCGTTCCTAA 57.325 47.619 0.00 0.00 0.00 2.69
297 298 3.897657 ATCATACTCCCTCCGTTCCTA 57.102 47.619 0.00 0.00 0.00 2.94
298 299 2.777459 ATCATACTCCCTCCGTTCCT 57.223 50.000 0.00 0.00 0.00 3.36
299 300 2.966516 AGAATCATACTCCCTCCGTTCC 59.033 50.000 0.00 0.00 0.00 3.62
300 301 4.372656 CAAGAATCATACTCCCTCCGTTC 58.627 47.826 0.00 0.00 0.00 3.95
301 302 3.432326 GCAAGAATCATACTCCCTCCGTT 60.432 47.826 0.00 0.00 0.00 4.44
302 303 2.103263 GCAAGAATCATACTCCCTCCGT 59.897 50.000 0.00 0.00 0.00 4.69
303 304 2.103094 TGCAAGAATCATACTCCCTCCG 59.897 50.000 0.00 0.00 0.00 4.63
304 305 3.845781 TGCAAGAATCATACTCCCTCC 57.154 47.619 0.00 0.00 0.00 4.30
305 306 3.501445 GCATGCAAGAATCATACTCCCTC 59.499 47.826 14.21 0.00 0.00 4.30
306 307 3.484407 GCATGCAAGAATCATACTCCCT 58.516 45.455 14.21 0.00 0.00 4.20
307 308 2.555757 GGCATGCAAGAATCATACTCCC 59.444 50.000 21.36 0.00 0.00 4.30
308 309 2.225019 CGGCATGCAAGAATCATACTCC 59.775 50.000 21.36 0.00 0.00 3.85
309 310 2.874701 ACGGCATGCAAGAATCATACTC 59.125 45.455 21.36 0.00 0.00 2.59
310 311 2.615447 CACGGCATGCAAGAATCATACT 59.385 45.455 21.36 0.00 0.00 2.12
311 312 2.990941 CACGGCATGCAAGAATCATAC 58.009 47.619 21.36 0.00 0.00 2.39
342 343 7.586300 CAGTACTGTATTTTCAAACTTTGACCG 59.414 37.037 15.06 0.00 39.87 4.79
512 514 4.343323 TGGTGGTGACGGCCATGG 62.343 66.667 7.63 7.63 41.08 3.66
556 558 2.022129 CGGACGCTGACTGGTCAAC 61.022 63.158 4.94 0.00 39.39 3.18
633 637 2.512485 TTAAAAGACAGTGGCGACGA 57.488 45.000 0.00 0.00 0.00 4.20
681 685 3.036429 ATCGGTGCTTCTCCTGGGC 62.036 63.158 0.00 0.00 0.00 5.36
682 686 1.153289 CATCGGTGCTTCTCCTGGG 60.153 63.158 0.00 0.00 0.00 4.45
721 725 2.981859 CTCGCTATTGTTAGTGGGGT 57.018 50.000 0.00 0.00 36.72 4.95
774 778 2.159028 CCAAACAACAACCCAAACCGAT 60.159 45.455 0.00 0.00 0.00 4.18
778 782 2.028020 TCCACCAAACAACAACCCAAAC 60.028 45.455 0.00 0.00 0.00 2.93
792 796 1.227999 CGCTCGCTTCTTTCCACCAA 61.228 55.000 0.00 0.00 0.00 3.67
813 817 1.136565 CATCCAAAACCGCGCGAAT 59.863 52.632 34.63 16.98 0.00 3.34
918 922 0.179108 GTAGTCGCAGCCTCCGAAAT 60.179 55.000 0.00 0.00 36.36 2.17
939 943 2.162008 GGACTTCCTCGCCGATATAGTC 59.838 54.545 11.75 11.75 0.00 2.59
940 944 2.161030 GGACTTCCTCGCCGATATAGT 58.839 52.381 0.00 0.00 0.00 2.12
941 945 2.923605 GGACTTCCTCGCCGATATAG 57.076 55.000 0.00 0.00 0.00 1.31
949 953 1.141234 CTTACCCGGACTTCCTCGC 59.859 63.158 0.73 0.00 0.00 5.03
1196 1200 2.126071 CGACGAATGTGGACGCCT 60.126 61.111 0.00 0.00 0.00 5.52
1206 1210 4.001248 TCGTACACCCCGACGAAT 57.999 55.556 0.00 0.00 44.56 3.34
1423 1456 5.247507 TGACATTTGGTTCAAACTCACAG 57.752 39.130 0.00 0.00 36.13 3.66
1824 1861 5.549347 AGAGCTAACAGCATCCATCATTAG 58.451 41.667 0.38 0.00 45.56 1.73
1837 1874 6.183360 ACAGTGTGATCAGATAGAGCTAACAG 60.183 42.308 0.00 0.00 32.67 3.16
1888 1925 7.705325 TCGGTTTAACTAGAGAACATATTCAGC 59.295 37.037 0.00 0.00 37.29 4.26
1919 1956 6.846350 AGACTGTTTAGCTAAATGAATGTGC 58.154 36.000 21.28 7.15 0.00 4.57
1929 1966 5.069914 TCAGACCACAAGACTGTTTAGCTAA 59.930 40.000 0.86 0.86 31.64 3.09
2069 2109 1.078143 ACTGAGGCGATCTTTGGCC 60.078 57.895 0.00 0.00 46.43 5.36
2154 2194 1.067821 CTATGACCAAGGACGGCTCTC 59.932 57.143 0.00 0.00 0.00 3.20
2160 2200 2.873133 GTCCTCTATGACCAAGGACG 57.127 55.000 5.12 0.00 46.92 4.79
2254 2294 2.327200 TCAGGATGCTGCTGAATGAG 57.673 50.000 9.76 0.00 41.94 2.90
2499 2539 2.224606 CGGGCATGCTATGATTGTTCT 58.775 47.619 18.92 0.00 0.00 3.01
2526 2566 4.102649 GTTTTGCAGTACGCCATTTATCC 58.897 43.478 7.13 0.00 41.33 2.59
2677 2722 9.768215 AAATCCTCCCAAAATCTAAACTGAATA 57.232 29.630 0.00 0.00 0.00 1.75
2764 2845 7.222417 GCATCATGACATAGATCTAGTACATGC 59.778 40.741 24.82 18.70 35.41 4.06
2775 2856 9.986157 AATAATTTAGGGCATCATGACATAGAT 57.014 29.630 0.00 0.00 0.00 1.98
2831 2912 0.958822 AACCAAGGCAACGTCCAATC 59.041 50.000 0.00 0.00 46.39 2.67
2866 2947 3.790091 CATCGAGAACAGATGTGTCCAT 58.210 45.455 0.00 0.00 40.27 3.41
2991 3079 3.216292 GGGTTTGCCACACTGCGT 61.216 61.111 0.00 0.00 36.17 5.24
3013 3101 5.833131 ACAAAAAGGAGACAATGGCTTTAGA 59.167 36.000 0.00 0.00 0.00 2.10
3209 3297 8.664798 CAAAGAAATAATAATGTCGAGTGTGGA 58.335 33.333 0.00 0.00 0.00 4.02
3303 3391 5.008019 CAGGACACACATATTGCTGGAATAC 59.992 44.000 3.63 0.00 28.94 1.89
3444 3532 2.586357 GATCTCCACCGCCGCTTC 60.586 66.667 0.00 0.00 0.00 3.86
3537 3626 6.471198 CACAACAACACATCATATTCTGCATC 59.529 38.462 0.00 0.00 0.00 3.91
3580 3669 0.178998 AGTCGCCTCGCTATTCCCTA 60.179 55.000 0.00 0.00 0.00 3.53
3738 3827 0.315869 CGAACTTTGTTTGCGCGTCT 60.316 50.000 8.43 0.00 0.00 4.18
3741 3830 1.298041 ACCGAACTTTGTTTGCGCG 60.298 52.632 0.00 0.00 0.00 6.86
3750 3839 1.228154 GTCCAGGCCACCGAACTTT 60.228 57.895 5.01 0.00 0.00 2.66
3760 3849 4.404691 CCTGAAACTGTCCAGGCC 57.595 61.111 13.79 0.00 42.84 5.19
3810 3899 3.234630 TTCCACGGTTCGGCCTGAG 62.235 63.158 0.00 0.00 34.25 3.35
3906 3995 4.091509 CGGTCTAGGTGACTTCAAATTTCG 59.908 45.833 0.00 0.00 44.74 3.46
3950 4039 6.902224 TGATTACACACACACAGTATATGC 57.098 37.500 0.00 0.00 0.00 3.14
3962 4051 4.085357 AGAGTGGCTTTGATTACACACA 57.915 40.909 0.00 0.00 36.35 3.72
3965 4054 4.833390 ACCTAGAGTGGCTTTGATTACAC 58.167 43.478 0.00 0.00 0.00 2.90
3967 4056 5.524281 GCTTACCTAGAGTGGCTTTGATTAC 59.476 44.000 0.00 0.00 0.00 1.89
3976 4065 2.432510 ACATCAGCTTACCTAGAGTGGC 59.567 50.000 0.00 0.00 0.00 5.01
4055 4144 6.294955 CCTTTTCTCTTTTCTTGGGGAATCTG 60.295 42.308 0.00 0.00 33.53 2.90
4067 4156 6.495181 AGATTTCCCCTTCCTTTTCTCTTTTC 59.505 38.462 0.00 0.00 0.00 2.29
4135 4224 5.766222 ACAAAGCTTCATGATCAAACAGTC 58.234 37.500 0.00 0.00 0.00 3.51
4193 4282 5.405935 AGCAATCTTGTGTTATTTTCCCC 57.594 39.130 0.00 0.00 0.00 4.81
4195 4284 9.860898 AATCTAAGCAATCTTGTGTTATTTTCC 57.139 29.630 0.00 0.00 33.85 3.13
4228 4317 1.945394 TGCTACACTAGTACTAGCGCC 59.055 52.381 26.54 12.87 36.66 6.53
4229 4318 3.664798 CGATGCTACACTAGTACTAGCGC 60.665 52.174 26.54 22.22 36.66 5.92
4230 4319 3.664798 GCGATGCTACACTAGTACTAGCG 60.665 52.174 26.54 20.73 36.66 4.26
4231 4320 3.365164 GGCGATGCTACACTAGTACTAGC 60.365 52.174 26.54 17.12 36.66 3.42
4232 4321 3.120615 CGGCGATGCTACACTAGTACTAG 60.121 52.174 25.30 25.30 39.04 2.57
4233 4322 2.804527 CGGCGATGCTACACTAGTACTA 59.195 50.000 0.00 1.89 0.00 1.82
4236 4325 1.671979 ACGGCGATGCTACACTAGTA 58.328 50.000 16.62 0.00 0.00 1.82
4271 4369 1.789078 CTTTTGCGGCAGCTGACAGT 61.789 55.000 22.03 0.00 45.42 3.55
4272 4370 1.081641 CTTTTGCGGCAGCTGACAG 60.082 57.895 22.03 13.68 45.42 3.51
4386 4486 5.297029 GGCACTCTACTTGACTTGAAAAAGT 59.703 40.000 0.00 0.00 37.82 2.66
4394 4494 0.969894 AGCGGCACTCTACTTGACTT 59.030 50.000 1.45 0.00 0.00 3.01
4399 4499 3.133003 ACAATATCAGCGGCACTCTACTT 59.867 43.478 1.45 0.00 0.00 2.24
4410 4510 6.090763 TCACACAAAAGACTACAATATCAGCG 59.909 38.462 0.00 0.00 0.00 5.18
4463 4566 1.102978 ACAGGCCGCAATATGAAACC 58.897 50.000 0.00 0.00 0.00 3.27
4490 4593 9.109393 GGTAAGCTATATGAAAGACAATGAACA 57.891 33.333 0.00 0.00 0.00 3.18
4491 4594 9.109393 TGGTAAGCTATATGAAAGACAATGAAC 57.891 33.333 0.00 0.00 0.00 3.18
4492 4595 9.109393 GTGGTAAGCTATATGAAAGACAATGAA 57.891 33.333 0.00 0.00 0.00 2.57
4493 4596 8.486210 AGTGGTAAGCTATATGAAAGACAATGA 58.514 33.333 0.00 0.00 0.00 2.57
4494 4597 8.668510 AGTGGTAAGCTATATGAAAGACAATG 57.331 34.615 0.00 0.00 0.00 2.82
4495 4598 9.113838 CAAGTGGTAAGCTATATGAAAGACAAT 57.886 33.333 0.00 0.00 0.00 2.71
4496 4599 7.065803 GCAAGTGGTAAGCTATATGAAAGACAA 59.934 37.037 0.00 0.00 0.00 3.18
4497 4600 6.538742 GCAAGTGGTAAGCTATATGAAAGACA 59.461 38.462 0.00 0.00 0.00 3.41
4498 4601 6.017852 GGCAAGTGGTAAGCTATATGAAAGAC 60.018 42.308 0.00 0.00 0.00 3.01
4499 4602 6.055588 GGCAAGTGGTAAGCTATATGAAAGA 58.944 40.000 0.00 0.00 0.00 2.52
4500 4603 5.822519 TGGCAAGTGGTAAGCTATATGAAAG 59.177 40.000 0.00 0.00 0.00 2.62
4501 4604 5.750524 TGGCAAGTGGTAAGCTATATGAAA 58.249 37.500 0.00 0.00 0.00 2.69
4502 4605 5.366482 TGGCAAGTGGTAAGCTATATGAA 57.634 39.130 0.00 0.00 0.00 2.57
4503 4606 5.104527 ACTTGGCAAGTGGTAAGCTATATGA 60.105 40.000 30.71 0.00 41.01 2.15
4504 4607 5.126067 ACTTGGCAAGTGGTAAGCTATATG 58.874 41.667 30.71 1.22 41.01 1.78
4505 4608 5.373812 ACTTGGCAAGTGGTAAGCTATAT 57.626 39.130 30.71 2.11 41.01 0.86
4506 4609 4.837093 ACTTGGCAAGTGGTAAGCTATA 57.163 40.909 30.71 0.00 41.01 1.31
4507 4610 3.721087 ACTTGGCAAGTGGTAAGCTAT 57.279 42.857 30.71 2.88 41.01 2.97
4523 4626 0.179032 TACACACAGGCCACCACTTG 60.179 55.000 5.01 0.00 0.00 3.16
4524 4627 0.548989 TTACACACAGGCCACCACTT 59.451 50.000 5.01 0.00 0.00 3.16
4525 4628 0.771127 ATTACACACAGGCCACCACT 59.229 50.000 5.01 0.00 0.00 4.00
4526 4629 1.165270 GATTACACACAGGCCACCAC 58.835 55.000 5.01 0.00 0.00 4.16
4527 4630 1.064003 AGATTACACACAGGCCACCA 58.936 50.000 5.01 0.00 0.00 4.17
4528 4631 1.453155 CAGATTACACACAGGCCACC 58.547 55.000 5.01 0.00 0.00 4.61
4529 4632 1.271379 ACCAGATTACACACAGGCCAC 60.271 52.381 5.01 0.00 0.00 5.01
4530 4633 1.064003 ACCAGATTACACACAGGCCA 58.936 50.000 5.01 0.00 0.00 5.36
4531 4634 2.200373 AACCAGATTACACACAGGCC 57.800 50.000 0.00 0.00 0.00 5.19
4532 4635 3.058224 GTGAAACCAGATTACACACAGGC 60.058 47.826 0.00 0.00 0.00 4.85
4533 4636 4.133820 TGTGAAACCAGATTACACACAGG 58.866 43.478 0.00 0.00 36.72 4.00
4534 4637 5.749596 TTGTGAAACCAGATTACACACAG 57.250 39.130 0.00 0.00 40.37 3.66
4535 4638 6.707440 ATTTGTGAAACCAGATTACACACA 57.293 33.333 0.00 0.00 40.37 3.72
4536 4639 7.491048 ACAAATTTGTGAAACCAGATTACACAC 59.509 33.333 22.71 0.00 40.49 3.82
4537 4640 7.551585 ACAAATTTGTGAAACCAGATTACACA 58.448 30.769 22.71 0.00 40.49 3.72
4553 4656 5.933463 CACCCTATTGCAATCACAAATTTGT 59.067 36.000 16.86 18.13 43.36 2.83
4610 4721 2.161012 CACCATCACAGCTGTTCATGAC 59.839 50.000 26.96 0.00 0.00 3.06
4611 4722 2.429478 CACCATCACAGCTGTTCATGA 58.571 47.619 26.96 18.59 0.00 3.07
4612 4723 1.471287 CCACCATCACAGCTGTTCATG 59.529 52.381 18.94 20.64 0.00 3.07
4615 4726 1.609208 AACCACCATCACAGCTGTTC 58.391 50.000 18.94 0.00 0.00 3.18
4616 4727 1.956477 GAAACCACCATCACAGCTGTT 59.044 47.619 18.94 0.00 0.00 3.16
4617 4728 1.609208 GAAACCACCATCACAGCTGT 58.391 50.000 15.25 15.25 0.00 4.40
4618 4729 0.518636 CGAAACCACCATCACAGCTG 59.481 55.000 13.48 13.48 0.00 4.24
4620 4731 1.732259 CTACGAAACCACCATCACAGC 59.268 52.381 0.00 0.00 0.00 4.40
4621 4732 2.736721 CACTACGAAACCACCATCACAG 59.263 50.000 0.00 0.00 0.00 3.66
4622 4733 2.549134 CCACTACGAAACCACCATCACA 60.549 50.000 0.00 0.00 0.00 3.58
4623 4734 2.073816 CCACTACGAAACCACCATCAC 58.926 52.381 0.00 0.00 0.00 3.06
4624 4735 1.002659 CCCACTACGAAACCACCATCA 59.997 52.381 0.00 0.00 0.00 3.07
4625 4736 1.734163 CCCACTACGAAACCACCATC 58.266 55.000 0.00 0.00 0.00 3.51
4626 4737 0.322187 GCCCACTACGAAACCACCAT 60.322 55.000 0.00 0.00 0.00 3.55
4627 4738 1.071814 GCCCACTACGAAACCACCA 59.928 57.895 0.00 0.00 0.00 4.17
4628 4739 0.322187 ATGCCCACTACGAAACCACC 60.322 55.000 0.00 0.00 0.00 4.61
4633 4744 2.172851 AAACGATGCCCACTACGAAA 57.827 45.000 0.00 0.00 0.00 3.46
4637 4748 2.981898 ACCTAAAACGATGCCCACTAC 58.018 47.619 0.00 0.00 0.00 2.73
4641 4752 2.038689 TGTGTACCTAAAACGATGCCCA 59.961 45.455 0.00 0.00 0.00 5.36
4648 4759 5.382618 ACTAGGAGTGTGTACCTAAAACG 57.617 43.478 0.00 0.00 38.14 3.60
4656 4767 5.988287 AGTAGACCTACTAGGAGTGTGTAC 58.012 45.833 16.65 16.65 43.98 2.90
4659 4770 6.127675 GGAAAAGTAGACCTACTAGGAGTGTG 60.128 46.154 9.28 0.00 44.96 3.82
4660 4771 5.951148 GGAAAAGTAGACCTACTAGGAGTGT 59.049 44.000 9.28 0.00 44.96 3.55
4661 4772 5.066246 CGGAAAAGTAGACCTACTAGGAGTG 59.934 48.000 9.28 0.00 44.96 3.51
4662 4773 5.192176 CGGAAAAGTAGACCTACTAGGAGT 58.808 45.833 9.28 0.00 44.96 3.85
4663 4774 5.192176 ACGGAAAAGTAGACCTACTAGGAG 58.808 45.833 9.28 0.00 44.96 3.69
4664 4775 5.045286 AGACGGAAAAGTAGACCTACTAGGA 60.045 44.000 9.28 0.00 44.96 2.94
4667 4778 7.187824 TCTAGACGGAAAAGTAGACCTACTA 57.812 40.000 9.84 0.00 44.96 1.82
4670 4781 7.765695 TTTTCTAGACGGAAAAGTAGACCTA 57.234 36.000 0.00 0.00 39.37 3.08
4685 4796 6.808704 GGGATGTTTGCAAAGATTTTCTAGAC 59.191 38.462 21.38 7.40 0.00 2.59
4690 4801 6.427547 TGATTGGGATGTTTGCAAAGATTTTC 59.572 34.615 21.38 10.90 0.00 2.29
4700 4811 4.476628 AGGATTTGATTGGGATGTTTGC 57.523 40.909 0.00 0.00 0.00 3.68
4713 4824 7.383687 ACTGTTGATACTTCGTTAGGATTTGA 58.616 34.615 0.00 0.00 0.00 2.69
4716 4827 8.504005 CAAAACTGTTGATACTTCGTTAGGATT 58.496 33.333 0.00 0.00 0.00 3.01
4725 4836 6.655003 TGATCCTCCAAAACTGTTGATACTTC 59.345 38.462 0.00 0.00 0.00 3.01
4748 4859 1.134250 TGTAGTGTGTTGCCTGCTTGA 60.134 47.619 0.00 0.00 0.00 3.02
4750 4861 1.676006 GTTGTAGTGTGTTGCCTGCTT 59.324 47.619 0.00 0.00 0.00 3.91
4788 4899 4.235939 TCCAAAACCAAATGTGATCACG 57.764 40.909 20.54 8.60 0.00 4.35
4819 4930 1.134075 GACACGCATTGCTCTGCAG 59.866 57.895 7.63 7.63 42.40 4.41
4825 4936 3.005205 TCTTGTGACACGCATTGCT 57.995 47.368 7.12 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.