AutoCloner

Multiple sequence alignment - TraesCS5B01G078000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5B01G078000	chr5B	100.000	2273	0	0	1	2273	94082420	94084692	0.000000e+00	4198.0
1	TraesCS5B01G078000	chr7B	97.002	1301	39	0	1	1301	493222269	493223569	0.000000e+00	2187.0
2	TraesCS5B01G078000	chr7B	72.334	347	85	10	1840	2179	697533307	697532965	5.170000e-17	99.0
3	TraesCS5B01G078000	chr1B	96.202	1290	49	0	1	1290	477489551	477490840	0.000000e+00	2111.0
4	TraesCS5B01G078000	chr3A	93.865	1304	78	2	1	1303	456805015	456806317	0.000000e+00	1964.0
5	TraesCS5B01G078000	chr6A	93.630	1303	79	2	1	1303	486382698	486383996	0.000000e+00	1943.0
6	TraesCS5B01G078000	chr6A	91.276	1089	92	2	213	1301	29171000	29169915	0.000000e+00	1482.0
7	TraesCS5B01G078000	chr6A	93.953	215	13	0	1	215	29180105	29179891	2.180000e-85	326.0
8	TraesCS5B01G078000	chr6A	73.199	347	78	11	1828	2164	13370346	13370687	6.640000e-21	111.0
9	TraesCS5B01G078000	chr4A	92.518	1283	85	8	33	1305	632313208	632314489	0.000000e+00	1827.0
10	TraesCS5B01G078000	chr4A	89.551	1024	106	1	278	1301	552270593	552271615	0.000000e+00	1297.0
11	TraesCS5B01G078000	chr5D	93.148	1153	78	1	153	1305	440927001	440925850	0.000000e+00	1690.0
12	TraesCS5B01G078000	chr5D	80.180	111	18	2	1840	1946	350976941	350977051	1.870000e-11	80.5
13	TraesCS5B01G078000	chr6B	88.497	1304	148	2	1	1302	133347230	133348533	0.000000e+00	1576.0
14	TraesCS5B01G078000	chr6B	74.691	324	68	13	1840	2155	490324412	490324729	5.090000e-27	132.0
15	TraesCS5B01G078000	chr3B	92.600	973	71	1	1	973	683516798	683517769	0.000000e+00	1397.0
16	TraesCS5B01G078000	chr3B	97.619	42	1	0	1907	1948	675565801	675565842	3.130000e-09	73.1
17	TraesCS5B01G078000	chr5A	91.876	517	37	4	1299	1814	82294471	82294983	0.000000e+00	717.0
18	TraesCS5B01G078000	chr5A	93.867	375	16	3	1816	2185	82295021	82295393	1.970000e-155	558.0
19	TraesCS5B01G078000	chr5A	95.946	74	3	0	2200	2273	82295377	82295450	1.100000e-23	121.0
20	TraesCS5B01G078000	chr5A	97.143	35	1	0	2109	2143	354313664	354313630	2.440000e-05	60.2
21	TraesCS5B01G078000	chr6D	73.294	337	79	6	1828	2157	11809384	11809716	1.850000e-21	113.0
22	TraesCS5B01G078000	chr7D	71.924	317	81	6	1840	2149	463288263	463287948	4.020000e-13	86.1
23	TraesCS5B01G078000	chr7A	87.838	74	8	1	1882	1954	692005861	692005788	4.020000e-13	86.1
24	TraesCS5B01G078000	chr7A	78.571	126	21	3	1816	1936	449974779	449974655	6.730000e-11	78.7
25	TraesCS5B01G078000	chr1D	75.325	154	35	2	1880	2031	120953788	120953636	1.130000e-08	71.3

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5B01G078000	chr5B	94082420	94084692	2272	False	4198.000000	4198	100.000000	1	2273	1	chr5B.!!$F1	2272
1	TraesCS5B01G078000	chr7B	493222269	493223569	1300	False	2187.000000	2187	97.002000	1	1301	1	chr7B.!!$F1	1300
2	TraesCS5B01G078000	chr1B	477489551	477490840	1289	False	2111.000000	2111	96.202000	1	1290	1	chr1B.!!$F1	1289
3	TraesCS5B01G078000	chr3A	456805015	456806317	1302	False	1964.000000	1964	93.865000	1	1303	1	chr3A.!!$F1	1302
4	TraesCS5B01G078000	chr6A	486382698	486383996	1298	False	1943.000000	1943	93.630000	1	1303	1	chr6A.!!$F2	1302
5	TraesCS5B01G078000	chr6A	29169915	29171000	1085	True	1482.000000	1482	91.276000	213	1301	1	chr6A.!!$R1	1088
6	TraesCS5B01G078000	chr4A	632313208	632314489	1281	False	1827.000000	1827	92.518000	33	1305	1	chr4A.!!$F2	1272
7	TraesCS5B01G078000	chr4A	552270593	552271615	1022	False	1297.000000	1297	89.551000	278	1301	1	chr4A.!!$F1	1023
8	TraesCS5B01G078000	chr5D	440925850	440927001	1151	True	1690.000000	1690	93.148000	153	1305	1	chr5D.!!$R1	1152
9	TraesCS5B01G078000	chr6B	133347230	133348533	1303	False	1576.000000	1576	88.497000	1	1302	1	chr6B.!!$F1	1301
10	TraesCS5B01G078000	chr3B	683516798	683517769	971	False	1397.000000	1397	92.600000	1	973	1	chr3B.!!$F2	972
11	TraesCS5B01G078000	chr5A	82294471	82295450	979	False	465.333333	717	93.896333	1299	2273	3	chr5A.!!$F1	974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
738	739	0.036875	AGGCTTTGGTGGTGCTAGAC	59.963	55.0	0.0	0.0	0.0	2.59	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2121	2174	0.912486	ACTCAACCCTATCACAGGCC	59.088	55.0	0.0	0.0	43.98	5.19	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	5.480422	AGTGATACATTACACACAGTCTCCA	59.520	40.000	0.00	0.00	39.18	3.86
158	159	6.128336	GCTGATGCTATCTTGAACATACCATC	60.128	42.308	0.00	0.00	36.03	3.51
252	253	1.693627	ATCGGGCTCTTATGACTCGT	58.306	50.000	0.00	0.00	0.00	4.18
293	294	1.685148	GAAGGGACGACTACGGGTAT	58.315	55.000	0.00	0.00	44.46	2.73
343	344	4.164843	AGGTTGTGGAAGCTAAAAGTGA	57.835	40.909	0.00	0.00	38.17	3.41
728	729	3.011032	AGAATGATCAAGGAGGCTTTGGT	59.989	43.478	0.00	0.00	0.00	3.67
738	739	0.036875	AGGCTTTGGTGGTGCTAGAC	59.963	55.000	0.00	0.00	0.00	2.59
1083	1093	2.419574	GGTAGCGCCAGTTCTATTGGAA	60.420	50.000	2.29	0.00	37.96	3.53
1265	1276	2.629137	CTGATCATGCAGGAGCTAGAGT	59.371	50.000	18.20	0.00	42.74	3.24
1327	1338	0.183731	GGGAATGATGGGTGTCCTCC	59.816	60.000	0.00	0.00	0.00	4.30
1358	1369	2.793288	TTTCCAGTTATTCGGGTCCC	57.207	50.000	0.00	0.00	33.18	4.46
1360	1371	1.887797	TCCAGTTATTCGGGTCCCAT	58.112	50.000	9.12	0.00	33.18	4.00
1368	1379	5.529800	AGTTATTCGGGTCCCATAAAAATCG	59.470	40.000	9.12	0.00	0.00	3.34
1376	1387	6.016610	CGGGTCCCATAAAAATCGTTGAATAT	60.017	38.462	9.12	0.00	0.00	1.28
1377	1388	7.145323	GGGTCCCATAAAAATCGTTGAATATG	58.855	38.462	1.78	0.00	0.00	1.78
1436	1447	3.829948	TCGTAGTTTAAAGAGTGGCTCG	58.170	45.455	0.00	0.00	35.36	5.03
1437	1448	2.921754	CGTAGTTTAAAGAGTGGCTCGG	59.078	50.000	0.00	0.00	35.36	4.63
1443	1454	5.104900	AGTTTAAAGAGTGGCTCGGATACAT	60.105	40.000	0.00	0.00	35.36	2.29
1450	1461	1.348696	TGGCTCGGATACATCATGCAT	59.651	47.619	0.00	0.00	0.00	3.96
1516	1527	3.444916	TCATAGAGCGGCTCGTAAAAAG	58.555	45.455	23.15	10.84	35.36	2.27
1518	1529	2.450609	AGAGCGGCTCGTAAAAAGAA	57.549	45.000	23.15	0.00	35.36	2.52
1519	1530	2.338500	AGAGCGGCTCGTAAAAAGAAG	58.662	47.619	23.15	0.00	35.36	2.85
1520	1531	1.393883	GAGCGGCTCGTAAAAAGAAGG	59.606	52.381	15.09	0.00	0.00	3.46
1551	1562	3.627732	AGCGACTATTGGACGATACAG	57.372	47.619	0.00	0.00	0.00	2.74
1559	1570	0.606096	TGGACGATACAGGTGTGTGG	59.394	55.000	0.00	0.00	37.52	4.17
1576	1587	5.126222	GTGTGTGGAGAGAAGATATGAGTGA	59.874	44.000	0.00	0.00	0.00	3.41
1579	1590	6.265196	GTGTGGAGAGAAGATATGAGTGATCT	59.735	42.308	0.00	0.00	35.08	2.75
1581	1592	8.001292	TGTGGAGAGAAGATATGAGTGATCTTA	58.999	37.037	0.00	0.00	42.42	2.10
1604	1615	6.107901	AGCTCTATCATCACAGGGTATTTC	57.892	41.667	0.00	0.00	0.00	2.17
1675	1687	7.232737	TCTGGATCATGTGAACGGTATAGTTAT	59.767	37.037	0.00	0.00	34.00	1.89
1701	1713	7.114095	TGTGAAGATGAATGAAATCCTGATGA	58.886	34.615	0.00	0.00	0.00	2.92
1714	1726	2.963101	TCCTGATGACCCCTTATACGTG	59.037	50.000	0.00	0.00	0.00	4.49
1716	1728	3.492656	CCTGATGACCCCTTATACGTGTG	60.493	52.174	0.00	0.00	0.00	3.82
1717	1729	3.367321	TGATGACCCCTTATACGTGTGA	58.633	45.455	0.00	0.00	0.00	3.58
1749	1761	1.006400	AGGCTCTTTTCTCCATTGGGG	59.994	52.381	2.09	0.00	38.37	4.96
1750	1762	1.005924	GGCTCTTTTCTCCATTGGGGA	59.994	52.381	0.00	0.00	45.89	4.81
1832	1880	7.870954	CCAATGCTAAATAGTCGAGTAATACCA	59.129	37.037	3.64	0.00	0.00	3.25
1885	1937	5.311121	TGATCCCTAAGGTACACCAGAAAAA	59.689	40.000	0.38	0.00	38.89	1.94
1906	1958	9.827411	GAAAAAGTGACACAATTTAGACCTATC	57.173	33.333	8.59	0.00	30.35	2.08
1912	1964	8.230486	GTGACACAATTTAGACCTATCAGTTTG	58.770	37.037	0.00	0.00	0.00	2.93
1927	1979	5.994887	TCAGTTTGTGTAATGTGGTGTAC	57.005	39.130	0.00	0.00	0.00	2.90
1939	1991	7.707464	TGTAATGTGGTGTACAAGGTTATATCG	59.293	37.037	0.00	0.00	43.77	2.92
1969	2022	1.742411	GCGGCTAGCCACAAGTTATCA	60.742	52.381	32.47	0.00	40.81	2.15
1975	2028	4.274459	GCTAGCCACAAGTTATCATTCCAG	59.726	45.833	2.29	0.00	0.00	3.86
2009	2062	6.206829	AGTCCTACACAAAGTGCTTTTATTCC	59.793	38.462	0.00	0.00	36.98	3.01
2100	2153	1.026718	GGAAGGAAGGATGGTGTGCG	61.027	60.000	0.00	0.00	0.00	5.34
2116	2169	3.069289	TGTGCGATGAAGATGGATATGC	58.931	45.455	0.00	0.00	0.00	3.14
2118	2171	3.069289	TGCGATGAAGATGGATATGCAC	58.931	45.455	0.00	0.00	0.00	4.57
2119	2172	3.069289	GCGATGAAGATGGATATGCACA	58.931	45.455	0.00	0.00	0.00	4.57
2120	2173	3.499537	GCGATGAAGATGGATATGCACAA	59.500	43.478	0.00	0.00	0.00	3.33
2121	2174	4.378149	GCGATGAAGATGGATATGCACAAG	60.378	45.833	0.00	0.00	0.00	3.16
2122	2175	4.153655	CGATGAAGATGGATATGCACAAGG	59.846	45.833	0.00	0.00	0.00	3.61
2123	2176	3.216800	TGAAGATGGATATGCACAAGGC	58.783	45.455	0.00	0.00	45.13	4.35
2124	2177	2.283145	AGATGGATATGCACAAGGCC	57.717	50.000	0.00	0.00	43.89	5.19
2125	2178	1.779092	AGATGGATATGCACAAGGCCT	59.221	47.619	0.00	0.00	43.89	5.19
2126	2179	1.884579	GATGGATATGCACAAGGCCTG	59.115	52.381	5.69	2.82	43.89	4.85
2175	2228	3.674997	AGCAATGCTTTCGAAACTAGGA	58.325	40.909	6.47	0.00	33.89	2.94
2176	2229	4.265073	AGCAATGCTTTCGAAACTAGGAT	58.735	39.130	6.47	1.20	33.89	3.24
2177	2230	4.702131	AGCAATGCTTTCGAAACTAGGATT	59.298	37.500	6.47	7.82	33.89	3.01
2178	2231	5.183904	AGCAATGCTTTCGAAACTAGGATTT	59.816	36.000	6.47	0.00	33.89	2.17
2179	2232	5.513141	GCAATGCTTTCGAAACTAGGATTTC	59.487	40.000	6.47	1.70	35.59	2.17
2180	2233	6.611381	CAATGCTTTCGAAACTAGGATTTCA	58.389	36.000	6.47	0.00	38.30	2.69
2181	2234	7.253422	CAATGCTTTCGAAACTAGGATTTCAT	58.747	34.615	6.47	0.00	38.30	2.57
2182	2235	6.182039	TGCTTTCGAAACTAGGATTTCATG	57.818	37.500	6.47	0.00	38.30	3.07
2183	2236	5.705441	TGCTTTCGAAACTAGGATTTCATGT	59.295	36.000	6.47	0.00	38.30	3.21
2184	2237	6.206634	TGCTTTCGAAACTAGGATTTCATGTT	59.793	34.615	6.47	0.00	38.30	2.71
2185	2238	7.084486	GCTTTCGAAACTAGGATTTCATGTTT	58.916	34.615	6.47	0.00	38.30	2.83
2186	2239	7.595130	GCTTTCGAAACTAGGATTTCATGTTTT	59.405	33.333	6.47	0.00	38.30	2.43
2187	2240	8.795786	TTTCGAAACTAGGATTTCATGTTTTG	57.204	30.769	6.47	0.00	38.30	2.44
2188	2241	7.504924	TCGAAACTAGGATTTCATGTTTTGT	57.495	32.000	6.63	0.00	38.30	2.83
2189	2242	7.936584	TCGAAACTAGGATTTCATGTTTTGTT	58.063	30.769	6.63	0.00	38.30	2.83
2190	2243	8.410141	TCGAAACTAGGATTTCATGTTTTGTTT	58.590	29.630	6.63	0.00	38.30	2.83
2191	2244	9.030301	CGAAACTAGGATTTCATGTTTTGTTTT	57.970	29.630	6.63	0.00	38.30	2.43
2231	2284	7.773489	TTTCATGTTGATTGGGTAAATCTGA	57.227	32.000	0.00	0.00	44.42	3.27
2246	2299	7.283127	GGGTAAATCTGATTATGACATGTGTGT	59.717	37.037	1.15	0.00	42.49	3.72

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	5.221803	ACCAAGAGTCACTGTCAATGAGATT	60.222	40.000	0.00	0.00	0.00	2.40
343	344	1.535462	GAACACACGCACTTTAGGCAT	59.465	47.619	0.00	0.00	0.00	4.40
394	395	2.159296	TGTGCTGTAATGTACGCTCGAT	60.159	45.455	0.00	0.00	32.30	3.59
494	495	2.622452	CCCCAGAACCTCTTTGCATGAT	60.622	50.000	0.00	0.00	0.00	2.45
546	547	1.492133	TTTCTGGGTGGAGAGCAGGG	61.492	60.000	0.00	0.00	0.00	4.45
572	573	7.391833	ACCTTGAGTCACAAAGAATATCTTTCC	59.608	37.037	2.47	0.00	42.60	3.13
738	739	0.911769	TGGTGTGCTCCATAGGAAGG	59.088	55.000	0.00	0.00	31.96	3.46
771	772	1.191535	CAGGTGGTCTCCATCCGTAA	58.808	55.000	0.00	0.00	34.66	3.18
798	799	3.634397	TCAGTGTTGATCTTGATCCCC	57.366	47.619	7.99	0.23	0.00	4.81
1180	1191	1.017387	CAGCTCGAAACCCCTAATGC	58.983	55.000	0.00	0.00	0.00	3.56
1265	1276	8.531146	GGGGAAATGAGAACTTTATTCAATCAA	58.469	33.333	0.00	0.00	0.00	2.57
1306	1317	0.921896	AGGACACCCATCATTCCCTG	59.078	55.000	0.00	0.00	33.88	4.45
1313	1324	0.413434	TCAGAGGAGGACACCCATCA	59.587	55.000	0.00	0.00	33.88	3.07
1338	1349	2.578940	TGGGACCCGAATAACTGGAAAT	59.421	45.455	5.91	0.00	0.00	2.17
1350	1361	3.011119	CAACGATTTTTATGGGACCCGA	58.989	45.455	5.91	0.00	0.00	5.14
1353	1364	7.860872	GTCATATTCAACGATTTTTATGGGACC	59.139	37.037	0.00	0.00	0.00	4.46
1376	1387	5.517411	CCGTGCATTACTACGAAATTAGTCA	59.483	40.000	0.00	0.00	42.54	3.41
1377	1388	5.051240	CCCGTGCATTACTACGAAATTAGTC	60.051	44.000	0.00	0.00	42.54	2.59
1387	1398	4.186159	ACACAATACCCGTGCATTACTAC	58.814	43.478	0.00	0.00	37.93	2.73
1436	1447	8.102800	TCAATTTACTCATGCATGATGTATCC	57.897	34.615	28.81	0.00	36.02	2.59
1465	1476	9.753674	AAAGGTTGTATTTCTATCTCCATGAAA	57.246	29.630	0.00	0.00	34.75	2.69
1516	1527	2.421424	AGTCGCTTGATGCAATTCCTTC	59.579	45.455	0.00	0.00	43.06	3.46
1518	1529	2.119801	AGTCGCTTGATGCAATTCCT	57.880	45.000	0.00	0.00	43.06	3.36
1519	1530	4.285292	CAATAGTCGCTTGATGCAATTCC	58.715	43.478	0.00	0.00	43.06	3.01
1520	1531	4.035558	TCCAATAGTCGCTTGATGCAATTC	59.964	41.667	0.00	0.00	43.06	2.17
1544	1555	2.092323	TCTCTCCACACACCTGTATCG	58.908	52.381	0.00	0.00	0.00	2.92
1551	1562	4.404073	ACTCATATCTTCTCTCCACACACC	59.596	45.833	0.00	0.00	0.00	4.16
1559	1570	8.340618	AGCTAAGATCACTCATATCTTCTCTC	57.659	38.462	1.80	0.00	41.61	3.20
1576	1587	5.401750	ACCCTGTGATGATAGAGCTAAGAT	58.598	41.667	0.00	0.00	0.00	2.40
1579	1590	7.523873	CGAAATACCCTGTGATGATAGAGCTAA	60.524	40.741	0.00	0.00	0.00	3.09
1581	1592	5.279206	CGAAATACCCTGTGATGATAGAGCT	60.279	44.000	0.00	0.00	0.00	4.09
1604	1615	1.529438	TGCGAGGTAAAAAGTTCAGCG	59.471	47.619	0.00	0.00	0.00	5.18
1608	1619	3.242936	TGCACTTGCGAGGTAAAAAGTTC	60.243	43.478	5.79	0.00	45.83	3.01
1675	1687	7.612633	TCATCAGGATTTCATTCATCTTCACAA	59.387	33.333	0.00	0.00	0.00	3.33
1695	1707	3.383505	TCACACGTATAAGGGGTCATCAG	59.616	47.826	0.00	0.00	0.00	2.90
1701	1713	2.537633	TCCTCACACGTATAAGGGGT	57.462	50.000	8.84	0.00	0.00	4.95
1714	1726	2.835156	AGAGCCTTCCTTACTTCCTCAC	59.165	50.000	0.00	0.00	0.00	3.51
1716	1728	4.561500	AAAGAGCCTTCCTTACTTCCTC	57.438	45.455	0.00	0.00	0.00	3.71
1717	1729	4.599676	AGAAAAGAGCCTTCCTTACTTCCT	59.400	41.667	0.00	0.00	0.00	3.36
1749	1761	2.710902	GCCCGGGTGCCTTCAAATC	61.711	63.158	24.63	0.00	0.00	2.17
1750	1762	2.679996	GCCCGGGTGCCTTCAAAT	60.680	61.111	24.63	0.00	0.00	2.32
1814	1826	6.579865	CCCTTGTGGTATTACTCGACTATTT	58.420	40.000	0.00	0.00	0.00	1.40
1855	1903	6.147473	TGGTGTACCTTAGGGATCATGATAA	58.853	40.000	8.54	0.00	36.82	1.75
1857	1905	4.566837	TGGTGTACCTTAGGGATCATGAT	58.433	43.478	8.25	8.25	36.82	2.45
1885	1937	7.246171	ACTGATAGGTCTAAATTGTGTCACT	57.754	36.000	4.27	0.00	0.00	3.41
1906	1958	5.743026	TGTACACCACATTACACAAACTG	57.257	39.130	0.00	0.00	30.04	3.16
1912	1964	8.726870	ATATAACCTTGTACACCACATTACAC	57.273	34.615	0.00	0.00	36.90	2.90
1927	1979	7.456253	CCGCTATCATTTTCGATATAACCTTG	58.544	38.462	0.00	0.00	0.00	3.61
1939	1991	2.224314	GTGGCTAGCCGCTATCATTTTC	59.776	50.000	35.04	5.97	42.89	2.29
1969	2022	6.841229	TGTGTAGGACTGATTATCTCTGGAAT	59.159	38.462	0.00	0.00	0.00	3.01
1975	2028	6.256757	GCACTTTGTGTAGGACTGATTATCTC	59.743	42.308	0.00	0.00	35.75	2.75
2009	2062	7.201732	GGATGTTGTATGTAATCAGTTTCCCTG	60.202	40.741	0.00	0.00	42.97	4.45
2026	2079	9.733556	ACTTTCATACACAATAAGGATGTTGTA	57.266	29.630	0.00	0.00	38.64	2.41
2100	2153	4.082895	GCCTTGTGCATATCCATCTTCATC	60.083	45.833	0.00	0.00	40.77	2.92
2118	2171	1.281867	TCAACCCTATCACAGGCCTTG	59.718	52.381	0.00	5.46	43.98	3.61
2119	2172	1.561542	CTCAACCCTATCACAGGCCTT	59.438	52.381	0.00	0.00	43.98	4.35
2120	2173	1.207791	CTCAACCCTATCACAGGCCT	58.792	55.000	0.00	0.00	43.98	5.19
2121	2174	0.912486	ACTCAACCCTATCACAGGCC	59.088	55.000	0.00	0.00	43.98	5.19
2122	2175	1.407437	CCACTCAACCCTATCACAGGC	60.407	57.143	0.00	0.00	43.98	4.85
2123	2176	1.210478	CCCACTCAACCCTATCACAGG	59.790	57.143	0.00	0.00	45.07	4.00
2124	2177	1.909302	ACCCACTCAACCCTATCACAG	59.091	52.381	0.00	0.00	0.00	3.66
2125	2178	2.038863	ACCCACTCAACCCTATCACA	57.961	50.000	0.00	0.00	0.00	3.58
2126	2179	3.434940	AAACCCACTCAACCCTATCAC	57.565	47.619	0.00	0.00	0.00	3.06
2194	2247	9.613428	CAATCAACATGAAATCCTAGTTAGGTA	57.387	33.333	0.00	0.00	44.02	3.08
2195	2248	7.557719	CCAATCAACATGAAATCCTAGTTAGGT	59.442	37.037	0.00	0.00	44.02	3.08
2196	2249	7.013655	CCCAATCAACATGAAATCCTAGTTAGG	59.986	40.741	0.00	0.00	45.02	2.69
2197	2250	7.557719	ACCCAATCAACATGAAATCCTAGTTAG	59.442	37.037	0.00	0.00	0.00	2.34
2198	2251	7.410174	ACCCAATCAACATGAAATCCTAGTTA	58.590	34.615	0.00	0.00	0.00	2.24
2246	2299	6.769134	TCTCACTTTATATTCCACTGACGA	57.231	37.500	0.00	0.00	0.00	4.20

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.