Multiple sequence alignment - TraesCS5B01G077200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G077200 chr5B 100.000 4796 0 0 1 4796 93206850 93211645 0.000000e+00 8857.0
1 TraesCS5B01G077200 chr5B 89.832 954 84 7 1 949 375711486 375710541 0.000000e+00 1212.0
2 TraesCS5B01G077200 chr5B 87.421 954 77 17 1 950 327195251 327196165 0.000000e+00 1057.0
3 TraesCS5B01G077200 chr5B 93.333 60 4 0 2309 2368 93209046 93209105 6.610000e-14 89.8
4 TraesCS5B01G077200 chr5B 93.333 60 4 0 2197 2256 93209158 93209217 6.610000e-14 89.8
5 TraesCS5B01G077200 chr5D 94.341 2085 95 10 1452 3518 87169529 87171608 0.000000e+00 3175.0
6 TraesCS5B01G077200 chr5D 93.220 1298 57 15 3508 4796 87171627 87172902 0.000000e+00 1881.0
7 TraesCS5B01G077200 chr5D 92.323 495 26 3 960 1450 87169004 87169490 0.000000e+00 693.0
8 TraesCS5B01G077200 chr5D 96.552 116 4 0 2197 2312 87170342 87170457 4.900000e-45 193.0
9 TraesCS5B01G077200 chr5D 94.828 116 6 0 2253 2368 87170286 87170401 1.060000e-41 182.0
10 TraesCS5B01G077200 chr5D 96.667 60 2 0 2197 2256 87170398 87170457 3.050000e-17 100.0
11 TraesCS5B01G077200 chr5A 94.050 2084 100 11 1452 3517 80151555 80153632 0.000000e+00 3140.0
12 TraesCS5B01G077200 chr5A 91.775 1313 67 17 3508 4796 80153656 80154951 0.000000e+00 1788.0
13 TraesCS5B01G077200 chr5A 91.919 495 28 3 960 1450 80151030 80151516 0.000000e+00 682.0
14 TraesCS5B01G077200 chr5A 96.552 116 4 0 2197 2312 80152368 80152483 4.900000e-45 193.0
15 TraesCS5B01G077200 chr5A 95.690 116 5 0 2253 2368 80152312 80152427 2.280000e-43 187.0
16 TraesCS5B01G077200 chr5A 95.000 60 3 0 2197 2256 80152424 80152483 1.420000e-15 95.3
17 TraesCS5B01G077200 chr3A 90.114 961 78 7 1 957 418764895 418763948 0.000000e+00 1232.0
18 TraesCS5B01G077200 chr1A 89.627 964 80 9 1 957 327011159 327010209 0.000000e+00 1208.0
19 TraesCS5B01G077200 chr3B 89.562 958 84 9 1 954 700810563 700811508 0.000000e+00 1201.0
20 TraesCS5B01G077200 chr4D 89.397 962 82 10 1 957 116523797 116522851 0.000000e+00 1194.0
21 TraesCS5B01G077200 chr4D 89.282 961 84 10 1 957 421047871 421046926 0.000000e+00 1186.0
22 TraesCS5B01G077200 chr2B 89.413 954 90 5 1 950 488004917 488003971 0.000000e+00 1192.0
23 TraesCS5B01G077200 chr2B 88.970 961 81 6 1 957 636460059 636459120 0.000000e+00 1164.0
24 TraesCS5B01G077200 chr2B 88.773 962 78 13 1 957 783918733 783917797 0.000000e+00 1151.0
25 TraesCS5B01G077200 chr2B 87.734 962 79 14 1 957 783932596 783931669 0.000000e+00 1086.0
26 TraesCS5B01G077200 chr2B 89.610 693 56 8 1 690 65431993 65431314 0.000000e+00 867.0
27 TraesCS5B01G077200 chr3D 88.762 961 91 7 1 957 515988223 515987276 0.000000e+00 1160.0
28 TraesCS5B01G077200 chr1D 89.882 850 68 8 106 950 429021017 429021853 0.000000e+00 1077.0
29 TraesCS5B01G077200 chr1D 87.179 195 22 3 1 193 80951025 80950832 8.080000e-53 219.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G077200 chr5B 93206850 93211645 4795 False 3012.200000 8857 95.555333 1 4796 3 chr5B.!!$F2 4795
1 TraesCS5B01G077200 chr5B 375710541 375711486 945 True 1212.000000 1212 89.832000 1 949 1 chr5B.!!$R1 948
2 TraesCS5B01G077200 chr5B 327195251 327196165 914 False 1057.000000 1057 87.421000 1 950 1 chr5B.!!$F1 949
3 TraesCS5B01G077200 chr5D 87169004 87172902 3898 False 1037.333333 3175 94.655167 960 4796 6 chr5D.!!$F1 3836
4 TraesCS5B01G077200 chr5A 80151030 80154951 3921 False 1014.216667 3140 94.164333 960 4796 6 chr5A.!!$F1 3836
5 TraesCS5B01G077200 chr3A 418763948 418764895 947 True 1232.000000 1232 90.114000 1 957 1 chr3A.!!$R1 956
6 TraesCS5B01G077200 chr1A 327010209 327011159 950 True 1208.000000 1208 89.627000 1 957 1 chr1A.!!$R1 956
7 TraesCS5B01G077200 chr3B 700810563 700811508 945 False 1201.000000 1201 89.562000 1 954 1 chr3B.!!$F1 953
8 TraesCS5B01G077200 chr4D 116522851 116523797 946 True 1194.000000 1194 89.397000 1 957 1 chr4D.!!$R1 956
9 TraesCS5B01G077200 chr4D 421046926 421047871 945 True 1186.000000 1186 89.282000 1 957 1 chr4D.!!$R2 956
10 TraesCS5B01G077200 chr2B 488003971 488004917 946 True 1192.000000 1192 89.413000 1 950 1 chr2B.!!$R2 949
11 TraesCS5B01G077200 chr2B 636459120 636460059 939 True 1164.000000 1164 88.970000 1 957 1 chr2B.!!$R3 956
12 TraesCS5B01G077200 chr2B 783917797 783918733 936 True 1151.000000 1151 88.773000 1 957 1 chr2B.!!$R4 956
13 TraesCS5B01G077200 chr2B 783931669 783932596 927 True 1086.000000 1086 87.734000 1 957 1 chr2B.!!$R5 956
14 TraesCS5B01G077200 chr2B 65431314 65431993 679 True 867.000000 867 89.610000 1 690 1 chr2B.!!$R1 689
15 TraesCS5B01G077200 chr3D 515987276 515988223 947 True 1160.000000 1160 88.762000 1 957 1 chr3D.!!$R1 956
16 TraesCS5B01G077200 chr1D 429021017 429021853 836 False 1077.000000 1077 89.882000 106 950 1 chr1D.!!$F1 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 985 0.032678 CCATAGACTACTGCAGCCCG 59.967 60.0 15.27 4.69 0.00 6.13 F
1328 1359 0.179029 CACGACCCCAATACCCCATC 60.179 60.0 0.00 0.00 0.00 3.51 F
2760 2844 0.249868 TTGCACAGTTCCGTCCTGAG 60.250 55.0 0.00 0.00 34.04 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1779 1851 0.698238 ACAGCCAAGCCAGTGGATAA 59.302 50.0 15.20 0.00 41.65 1.75 R
3208 3292 0.036105 CACCAGCAGCCATGTACTCA 60.036 55.0 0.00 0.00 0.00 3.41 R
4746 4888 0.034616 GGAGCAATCCTCGGGATCAG 59.965 60.0 5.97 4.18 42.27 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 90 1.409427 CCACCGTAGAGGAAGATCCAC 59.591 57.143 0.00 0.00 45.00 4.02
92 93 2.291670 ACCGTAGAGGAAGATCCACAGT 60.292 50.000 0.00 0.00 45.00 3.55
268 274 2.733218 CCAAGCACTTCGTCGCGA 60.733 61.111 3.71 3.71 0.00 5.87
271 277 1.372997 AAGCACTTCGTCGCGATGT 60.373 52.632 26.40 13.64 43.18 3.06
346 355 2.699073 CTGATGAACGGCAGGATGG 58.301 57.895 0.00 0.00 35.86 3.51
575 586 3.065371 AGTCTGCTTTATGGTTTATGCGC 59.935 43.478 0.00 0.00 0.00 6.09
586 597 6.935741 ATGGTTTATGCGCTGAACTATTTA 57.064 33.333 9.73 0.00 0.00 1.40
770 794 3.514706 TCAGGCATTGCATACAACCAAAT 59.485 39.130 11.39 0.00 38.99 2.32
777 801 5.991933 TTGCATACAACCAAATACCATGT 57.008 34.783 0.00 0.00 0.00 3.21
798 823 6.921486 TGTCTAGGTTTGTCCACTAACATA 57.079 37.500 6.41 3.12 39.02 2.29
803 829 4.349930 AGGTTTGTCCACTAACATACAGGT 59.650 41.667 6.41 0.00 39.02 4.00
833 859 2.113986 GGCAGTGTGGTTCAGCCT 59.886 61.111 0.00 0.00 42.01 4.58
837 863 1.611673 GCAGTGTGGTTCAGCCTATGT 60.612 52.381 0.00 0.00 38.35 2.29
840 866 4.323417 CAGTGTGGTTCAGCCTATGTAAA 58.677 43.478 0.00 0.00 38.35 2.01
842 868 3.124636 GTGTGGTTCAGCCTATGTAAACG 59.875 47.826 0.00 0.00 38.35 3.60
846 872 5.049267 GTGGTTCAGCCTATGTAAACGAAAA 60.049 40.000 0.00 0.00 38.35 2.29
861 887 2.297033 ACGAAAAGACATGCAGGCAATT 59.703 40.909 0.00 0.00 0.00 2.32
875 901 3.184986 CAGGCAATTAAACAACTTGCAGC 59.815 43.478 11.65 0.00 45.44 5.25
881 907 1.185315 AAACAACTTGCAGCTGGTGT 58.815 45.000 17.12 0.35 0.00 4.16
914 940 1.742761 TTTGCATAGTCAGGCTGAGC 58.257 50.000 19.38 17.91 31.14 4.26
940 966 0.595095 GGCTATGCAATGCAGCTACC 59.405 55.000 14.98 8.74 43.65 3.18
950 977 4.502259 GCAATGCAGCTACCATAGACTACT 60.502 45.833 0.00 0.00 0.00 2.57
954 981 3.551863 GCAGCTACCATAGACTACTGCAG 60.552 52.174 13.48 13.48 46.28 4.41
957 984 1.123928 ACCATAGACTACTGCAGCCC 58.876 55.000 15.27 0.00 0.00 5.19
958 985 0.032678 CCATAGACTACTGCAGCCCG 59.967 60.000 15.27 4.69 0.00 6.13
1047 1078 3.462678 GTCTCCACCCTCCTCGCC 61.463 72.222 0.00 0.00 0.00 5.54
1324 1355 2.124445 GGCACGACCCCAATACCC 60.124 66.667 0.00 0.00 0.00 3.69
1325 1356 2.124445 GCACGACCCCAATACCCC 60.124 66.667 0.00 0.00 0.00 4.95
1326 1357 2.974041 GCACGACCCCAATACCCCA 61.974 63.158 0.00 0.00 0.00 4.96
1327 1358 1.919771 CACGACCCCAATACCCCAT 59.080 57.895 0.00 0.00 0.00 4.00
1328 1359 0.179029 CACGACCCCAATACCCCATC 60.179 60.000 0.00 0.00 0.00 3.51
1335 1366 2.029073 AATACCCCATCGAGCGCG 59.971 61.111 2.41 2.41 39.35 6.86
1342 1373 1.226859 CCATCGAGCGCGGTTTCTA 60.227 57.895 14.00 0.00 38.28 2.10
1343 1374 0.597637 CCATCGAGCGCGGTTTCTAT 60.598 55.000 14.00 0.75 38.28 1.98
1365 1396 6.879276 ATCGTAGTAGAAATTGGATCTCGA 57.121 37.500 0.00 0.00 0.00 4.04
1382 1413 1.764180 CGAGAGACGGTCCTAGTCGC 61.764 65.000 4.14 0.00 42.97 5.19
1387 1418 1.935327 GACGGTCCTAGTCGCAGCTT 61.935 60.000 0.00 0.00 0.00 3.74
1391 1422 1.634702 GTCCTAGTCGCAGCTTCTTG 58.365 55.000 0.00 0.00 0.00 3.02
1406 1437 3.811497 GCTTCTTGGCTTCTTGCAAATTT 59.189 39.130 0.00 0.00 45.15 1.82
1411 1442 4.178545 TGGCTTCTTGCAAATTTAGCTC 57.821 40.909 16.40 10.21 45.15 4.09
1424 1455 6.603095 CAAATTTAGCTCGCTTTAGTTCTGT 58.397 36.000 0.00 0.00 0.00 3.41
1425 1456 5.786401 ATTTAGCTCGCTTTAGTTCTGTG 57.214 39.130 0.00 0.00 0.00 3.66
1431 1462 4.437239 CTCGCTTTAGTTCTGTGATGGAT 58.563 43.478 0.00 0.00 0.00 3.41
1437 1468 5.860941 TTAGTTCTGTGATGGATCCTCTC 57.139 43.478 14.23 10.40 0.00 3.20
1450 1481 0.895530 TCCTCTCGCCGTTCTGATTT 59.104 50.000 0.00 0.00 0.00 2.17
1451 1482 1.275291 TCCTCTCGCCGTTCTGATTTT 59.725 47.619 0.00 0.00 0.00 1.82
1453 1484 3.056393 TCCTCTCGCCGTTCTGATTTTTA 60.056 43.478 0.00 0.00 0.00 1.52
1457 1488 6.249035 TCTCGCCGTTCTGATTTTTATTTT 57.751 33.333 0.00 0.00 0.00 1.82
1458 1489 6.083630 TCTCGCCGTTCTGATTTTTATTTTG 58.916 36.000 0.00 0.00 0.00 2.44
1459 1490 6.003234 TCGCCGTTCTGATTTTTATTTTGA 57.997 33.333 0.00 0.00 0.00 2.69
1460 1491 5.854338 TCGCCGTTCTGATTTTTATTTTGAC 59.146 36.000 0.00 0.00 0.00 3.18
1461 1492 5.627367 CGCCGTTCTGATTTTTATTTTGACA 59.373 36.000 0.00 0.00 0.00 3.58
1468 1535 8.351495 TCTGATTTTTATTTTGACAACTGCAC 57.649 30.769 0.00 0.00 0.00 4.57
1470 1537 8.715191 TGATTTTTATTTTGACAACTGCACTT 57.285 26.923 0.00 0.00 0.00 3.16
1483 1553 5.163754 ACAACTGCACTTTACTTCTGTGAAC 60.164 40.000 0.00 0.00 33.95 3.18
1498 1568 4.276678 TCTGTGAACTGAGAAAAATGCAGG 59.723 41.667 0.00 0.00 34.05 4.85
1505 1575 3.754965 TGAGAAAAATGCAGGCTAGTGT 58.245 40.909 0.00 0.00 0.00 3.55
1509 1579 5.070001 AGAAAAATGCAGGCTAGTGTTGTA 58.930 37.500 0.00 0.00 0.00 2.41
1510 1580 4.766404 AAAATGCAGGCTAGTGTTGTAC 57.234 40.909 0.00 0.00 0.00 2.90
1511 1581 3.703001 AATGCAGGCTAGTGTTGTACT 57.297 42.857 0.00 0.00 43.56 2.73
1512 1582 2.455674 TGCAGGCTAGTGTTGTACTG 57.544 50.000 0.00 0.00 40.65 2.74
1519 1589 4.701171 AGGCTAGTGTTGTACTGAGTACTC 59.299 45.833 21.95 16.32 40.65 2.59
1526 1596 6.776603 AGTGTTGTACTGAGTACTCCTTAACT 59.223 38.462 21.95 13.68 39.49 2.24
1581 1653 7.048629 TGGAACTTAATCAAAGCAAATGTGA 57.951 32.000 0.00 0.00 38.93 3.58
1592 1664 2.489329 AGCAAATGTGATGTACTGGCAC 59.511 45.455 0.00 0.54 0.00 5.01
1595 1667 2.760634 ATGTGATGTACTGGCACGAA 57.239 45.000 0.00 0.00 35.37 3.85
1599 1671 3.056465 TGTGATGTACTGGCACGAACATA 60.056 43.478 4.99 0.00 35.37 2.29
1607 1679 5.195001 ACTGGCACGAACATAAAAATGTT 57.805 34.783 3.52 3.52 46.37 2.71
1626 1698 5.083533 TGTTTGAACTGCATTTTCAGGTT 57.916 34.783 10.00 0.00 38.36 3.50
1630 1702 4.681744 TGAACTGCATTTTCAGGTTGTTC 58.318 39.130 6.77 4.45 38.36 3.18
1686 1758 2.238942 ATCCGCGCTTCACAATGATA 57.761 45.000 5.56 0.00 0.00 2.15
1740 1812 4.202567 TGGGAGGCTCTTAACAAATTCACT 60.203 41.667 15.23 0.00 0.00 3.41
1749 1821 3.626028 AACAAATTCACTCCGCAGTTC 57.374 42.857 0.00 0.00 0.00 3.01
1776 1848 5.818136 TTGATACAAGTGGCTATGCTTTC 57.182 39.130 0.00 0.00 0.00 2.62
1779 1851 3.146104 ACAAGTGGCTATGCTTTCACT 57.854 42.857 0.00 0.00 41.59 3.41
1817 1889 1.609072 GTTTGGTTGCAAGGTCCTCTC 59.391 52.381 0.00 0.00 0.00 3.20
2062 2146 5.624159 CATGTTCTCTTGGCCCAATCTATA 58.376 41.667 0.00 0.00 0.00 1.31
2063 2147 5.296151 TGTTCTCTTGGCCCAATCTATAG 57.704 43.478 0.00 0.00 0.00 1.31
2070 2154 5.610982 TCTTGGCCCAATCTATAGTATGGTT 59.389 40.000 18.80 0.77 0.00 3.67
2217 2301 7.575365 CAAAACTAATTGGATGTTCTTTTGGC 58.425 34.615 0.00 0.00 0.00 4.52
2239 2323 4.025647 GCTGTAGCATTTGGTTATCTCGAC 60.026 45.833 0.00 0.00 41.59 4.20
2279 2363 4.098914 TGGATGTTCTTTTGGCTGTAGT 57.901 40.909 0.00 0.00 0.00 2.73
2313 2397 5.862323 TCTCGATGCAAAGTTCTGTACTAAC 59.138 40.000 0.00 0.00 35.54 2.34
2353 2437 2.783135 AGCATTTGGTTGTCTCGATGT 58.217 42.857 0.00 0.00 0.00 3.06
2465 2549 8.308931 CAAGATCCCATATTGTGAATATTTGGG 58.691 37.037 11.46 11.46 41.80 4.12
2482 2566 3.669354 GGAAGTCCCAGAGCGTATG 57.331 57.895 0.00 0.00 34.14 2.39
2486 2570 0.461961 AGTCCCAGAGCGTATGAAGC 59.538 55.000 0.00 0.00 0.00 3.86
2512 2596 5.780793 GGTATACCCTCCATGTGATACTTCT 59.219 44.000 11.17 0.00 0.00 2.85
2547 2631 1.482182 TCCAGATTCCCATCAGTCACG 59.518 52.381 0.00 0.00 0.00 4.35
2605 2689 6.552859 TGAATGCAAGTCATCGACTAAAAA 57.447 33.333 0.00 0.00 42.59 1.94
2614 2698 8.926710 CAAGTCATCGACTAAAAATACTTCTGT 58.073 33.333 0.00 0.00 42.59 3.41
2615 2699 8.467402 AGTCATCGACTAAAAATACTTCTGTG 57.533 34.615 0.00 0.00 41.51 3.66
2700 2784 8.922058 ACATTTGATGAATAAAACAGATGCTC 57.078 30.769 0.00 0.00 31.22 4.26
2731 2815 6.434340 GGAAAGATCAACAACACCTCCTATTT 59.566 38.462 0.00 0.00 0.00 1.40
2760 2844 0.249868 TTGCACAGTTCCGTCCTGAG 60.250 55.000 0.00 0.00 34.04 3.35
2916 3000 5.728471 TCTTGAAAGGCTAGATTCAGACTG 58.272 41.667 0.00 0.00 36.93 3.51
2920 3004 5.105554 TGAAAGGCTAGATTCAGACTGTCTC 60.106 44.000 7.49 0.00 38.57 3.36
2986 3070 6.601217 AGGATCTGGAAAGATTACAAAAGCTC 59.399 38.462 0.00 0.00 29.07 4.09
3058 3142 5.510520 CCAGGATATCTCTTACAGGTCTTGC 60.511 48.000 2.05 0.00 0.00 4.01
3063 3147 4.955811 TCTCTTACAGGTCTTGCTTTCA 57.044 40.909 0.00 0.00 0.00 2.69
3070 3154 5.757850 ACAGGTCTTGCTTTCAAAACTAG 57.242 39.130 0.00 0.00 0.00 2.57
3073 3157 5.529060 CAGGTCTTGCTTTCAAAACTAGAGT 59.471 40.000 0.00 0.00 0.00 3.24
3084 3168 9.110502 CTTTCAAAACTAGAGTTAGAAACCACT 57.889 33.333 14.22 0.00 37.31 4.00
3096 3180 7.248437 AGTTAGAAACCACTTTTTCTTTGTCG 58.752 34.615 3.59 0.00 42.09 4.35
3208 3292 5.240623 TGAGCATTTTGGAATAAGTGTCGTT 59.759 36.000 0.00 0.00 0.00 3.85
3260 3344 5.483685 TGGTGAGTAACTGAGCAAGTATT 57.516 39.130 0.00 0.00 38.56 1.89
3304 3388 3.243535 CCTCAACTTCACTTTCCAAAGGC 60.244 47.826 4.13 0.00 40.31 4.35
3309 3393 2.071778 TCACTTTCCAAAGGCTGCTT 57.928 45.000 0.00 0.00 40.31 3.91
3321 3405 0.601841 GGCTGCTTTGCATGCTTTGT 60.602 50.000 20.33 0.00 38.13 2.83
3339 3423 8.842358 TGCTTTGTACTATAGCTGTTTAGTTT 57.158 30.769 10.04 0.00 35.93 2.66
3355 3439 7.028361 TGTTTAGTTTGAAGTTTTGGGTTACG 58.972 34.615 0.00 0.00 0.00 3.18
3364 3448 3.054166 GTTTTGGGTTACGGATTGCAAC 58.946 45.455 0.00 0.00 0.00 4.17
3411 3495 1.686052 TGCTGTGAACAACAAATCCCC 59.314 47.619 0.00 0.00 38.67 4.81
3428 3512 3.197983 TCCCCCTTTGAATGTACTCCAT 58.802 45.455 0.00 0.00 34.36 3.41
3433 3517 6.129179 CCCCTTTGAATGTACTCCATATTGT 58.871 40.000 0.00 0.00 31.97 2.71
3458 3542 2.668144 TTGGGTGTCAAAGGTAAGGG 57.332 50.000 0.00 0.00 31.46 3.95
3461 3545 2.107552 TGGGTGTCAAAGGTAAGGGAAG 59.892 50.000 0.00 0.00 0.00 3.46
3470 3554 7.116736 GTCAAAGGTAAGGGAAGGATGAATTA 58.883 38.462 0.00 0.00 0.00 1.40
3489 3573 6.592607 TGAATTACTAGAACCATGAACCGAAC 59.407 38.462 0.00 0.00 0.00 3.95
3490 3574 5.471556 TTACTAGAACCATGAACCGAACA 57.528 39.130 0.00 0.00 0.00 3.18
3505 3589 1.200716 CGAACAATGCTGCACTTGGAT 59.799 47.619 20.69 13.23 0.00 3.41
3518 3637 3.870274 CACTTGGATCTGATCTGCTGAA 58.130 45.455 16.61 3.03 0.00 3.02
3524 3643 5.691896 TGGATCTGATCTGCTGAAATTGAT 58.308 37.500 16.61 0.05 0.00 2.57
3526 3645 5.107026 GGATCTGATCTGCTGAAATTGATCG 60.107 44.000 16.61 0.00 38.40 3.69
3530 3649 5.872635 TGATCTGCTGAAATTGATCGTTTC 58.127 37.500 13.56 13.56 38.40 2.78
3747 3866 4.336713 AGGTTTTCAGAGCAGAAGTTTCAC 59.663 41.667 0.00 0.00 0.00 3.18
3759 3878 5.504010 GCAGAAGTTTCACGAAGATTTCACA 60.504 40.000 0.00 0.00 0.00 3.58
3762 3881 6.967199 AGAAGTTTCACGAAGATTTCACAAAC 59.033 34.615 0.00 0.00 0.00 2.93
3794 3913 4.273480 CCCAGTTTTATTAGGACGCTCATG 59.727 45.833 0.00 0.00 0.00 3.07
3795 3914 5.116180 CCAGTTTTATTAGGACGCTCATGA 58.884 41.667 0.00 0.00 0.00 3.07
3797 3916 4.804139 AGTTTTATTAGGACGCTCATGACG 59.196 41.667 13.71 13.71 0.00 4.35
3798 3917 2.417339 TATTAGGACGCTCATGACGC 57.583 50.000 14.78 11.00 0.00 5.19
3804 3924 0.802222 GACGCTCATGACGCTTGCTA 60.802 55.000 14.78 0.00 0.00 3.49
3827 3947 9.981114 GCTATAATAGCCCAAAAACATTAACAT 57.019 29.630 0.00 0.00 45.95 2.71
3848 3968 4.224991 TGTTCTGCATGATGGAGATTCA 57.775 40.909 17.38 15.63 44.28 2.57
3943 4063 7.115520 CACACACACTGTTGTATAGAGAAGAAG 59.884 40.741 0.00 0.00 33.30 2.85
3998 4118 6.145338 TCTTTGGCACTATACTAGTACTGC 57.855 41.667 15.90 15.90 37.23 4.40
4000 4120 4.913335 TGGCACTATACTAGTACTGCAC 57.087 45.455 21.76 14.97 37.23 4.57
4028 4159 3.117888 GGCCCCAATATCTGAACTTGAGA 60.118 47.826 0.00 0.00 0.00 3.27
4052 4183 1.805943 TCAACTCCATGCATGAACACG 59.194 47.619 28.31 10.81 0.00 4.49
4067 4198 7.172532 TGCATGAACACGTTTCTAAAGTTATCT 59.827 33.333 0.00 0.00 0.00 1.98
4068 4199 8.015658 GCATGAACACGTTTCTAAAGTTATCTT 58.984 33.333 0.00 0.00 35.14 2.40
4074 4205 9.268268 ACACGTTTCTAAAGTTATCTTCATGAA 57.732 29.630 8.12 8.12 32.90 2.57
4123 4254 3.083122 AGCCTCATCTGTGCATTCTTT 57.917 42.857 0.00 0.00 0.00 2.52
4161 4292 2.038557 GCCTTGAGGTTGAAGAGTGGTA 59.961 50.000 0.00 0.00 37.57 3.25
4177 4308 3.591527 AGTGGTATCCATGGGAAAACTGA 59.408 43.478 13.02 0.00 35.28 3.41
4196 4327 6.045072 ACTGATGGAAAATTGGTACTCGTA 57.955 37.500 0.00 0.00 0.00 3.43
4211 4342 4.808077 ACTCGTACCATGTAGTATGACG 57.192 45.455 0.00 0.00 34.15 4.35
4252 4383 0.963962 TCTCAACTCCGGCTAAACGT 59.036 50.000 0.00 0.00 0.00 3.99
4294 4432 1.214589 GGCGACGAAGGCTCTGTTA 59.785 57.895 0.00 0.00 0.00 2.41
4306 4444 6.497624 AAGGCTCTGTTATCTGAATCTCAT 57.502 37.500 0.00 0.00 0.00 2.90
4307 4445 7.522889 CGAAGGCTCTGTTATCTGAATCTCATA 60.523 40.741 0.00 0.00 0.00 2.15
4308 4446 6.991938 AGGCTCTGTTATCTGAATCTCATAC 58.008 40.000 0.00 0.00 0.00 2.39
4309 4447 5.861251 GGCTCTGTTATCTGAATCTCATACG 59.139 44.000 0.00 0.00 0.00 3.06
4310 4448 6.442952 GCTCTGTTATCTGAATCTCATACGT 58.557 40.000 0.00 0.00 0.00 3.57
4311 4449 7.308649 GGCTCTGTTATCTGAATCTCATACGTA 60.309 40.741 0.00 0.00 0.00 3.57
4312 4450 7.535940 GCTCTGTTATCTGAATCTCATACGTAC 59.464 40.741 0.00 0.00 0.00 3.67
4313 4451 8.678593 TCTGTTATCTGAATCTCATACGTACT 57.321 34.615 0.00 0.00 0.00 2.73
4322 4460 9.175060 CTGAATCTCATACGTACTAGTTTCATG 57.825 37.037 21.26 15.50 31.06 3.07
4325 4463 7.387119 TCTCATACGTACTAGTTTCATGTGT 57.613 36.000 0.00 0.00 0.00 3.72
4570 4712 2.763710 TAGCAGATGGGCGCCAGA 60.764 61.111 30.85 15.13 36.75 3.86
4597 4739 3.108289 CTCCACAGCAGCACGTCG 61.108 66.667 0.00 0.00 0.00 5.12
4708 4850 3.064207 CTCTTGCACGTAAGCTTTACCA 58.936 45.455 3.20 0.00 45.62 3.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 77 0.908198 GGCACTGTGGATCTTCCTCT 59.092 55.000 10.21 0.00 37.46 3.69
268 274 2.234661 TCAGCTTGAACTCCATCGACAT 59.765 45.455 0.00 0.00 0.00 3.06
271 277 1.205655 CCTCAGCTTGAACTCCATCGA 59.794 52.381 0.00 0.00 0.00 3.59
630 653 7.118245 CAGAGCATCAACTACTTAACAACATGA 59.882 37.037 0.00 0.00 37.82 3.07
662 685 5.163468 CCACACATCATAAGCAGAGTAGAGT 60.163 44.000 0.00 0.00 0.00 3.24
770 794 4.164981 AGTGGACAAACCTAGACATGGTA 58.835 43.478 0.00 0.00 36.69 3.25
777 801 6.070995 CCTGTATGTTAGTGGACAAACCTAGA 60.071 42.308 0.00 0.00 39.86 2.43
798 823 1.752788 GCCTGGTGTTTGGTTACCTGT 60.753 52.381 2.07 0.00 37.84 4.00
803 829 1.064314 ACACTGCCTGGTGTTTGGTTA 60.064 47.619 0.00 0.00 46.71 2.85
833 859 5.391523 GCCTGCATGTCTTTTCGTTTACATA 60.392 40.000 0.00 0.00 31.55 2.29
837 863 2.881513 TGCCTGCATGTCTTTTCGTTTA 59.118 40.909 0.00 0.00 0.00 2.01
840 866 1.317613 TTGCCTGCATGTCTTTTCGT 58.682 45.000 0.00 0.00 0.00 3.85
842 868 5.695816 TGTTTAATTGCCTGCATGTCTTTTC 59.304 36.000 0.00 0.00 0.00 2.29
846 872 4.281688 AGTTGTTTAATTGCCTGCATGTCT 59.718 37.500 0.00 0.00 0.00 3.41
861 887 2.374184 ACACCAGCTGCAAGTTGTTTA 58.626 42.857 8.66 0.00 44.42 2.01
875 901 1.825090 TGCAGCCTCAAATACACCAG 58.175 50.000 0.00 0.00 0.00 4.00
914 940 0.029834 GCATTGCATAGCCTTCACGG 59.970 55.000 3.15 0.00 0.00 4.94
915 941 0.734309 TGCATTGCATAGCCTTCACG 59.266 50.000 7.38 0.00 31.71 4.35
917 943 0.742505 GCTGCATTGCATAGCCTTCA 59.257 50.000 12.53 0.00 38.13 3.02
940 966 0.747255 ACGGGCTGCAGTAGTCTATG 59.253 55.000 16.64 0.00 0.00 2.23
950 977 1.292223 GAGAACAGTACGGGCTGCA 59.708 57.895 0.50 0.00 39.96 4.41
954 981 0.243095 ACTTCGAGAACAGTACGGGC 59.757 55.000 0.00 0.00 0.00 6.13
957 984 1.462283 TCGGACTTCGAGAACAGTACG 59.538 52.381 12.42 12.42 46.95 3.67
1011 1042 1.376466 GAAGGTGAGAAGGCCAGCA 59.624 57.895 5.01 0.00 34.73 4.41
1313 1344 1.705997 GCTCGATGGGGTATTGGGGT 61.706 60.000 0.00 0.00 0.00 4.95
1319 1350 3.991051 CCGCGCTCGATGGGGTAT 61.991 66.667 5.56 0.00 38.10 2.73
1323 1354 2.622903 TAGAAACCGCGCTCGATGGG 62.623 60.000 5.56 0.00 38.10 4.00
1324 1355 0.597637 ATAGAAACCGCGCTCGATGG 60.598 55.000 5.56 0.19 38.10 3.51
1325 1356 0.778815 GATAGAAACCGCGCTCGATG 59.221 55.000 5.56 0.00 38.10 3.84
1326 1357 0.660595 CGATAGAAACCGCGCTCGAT 60.661 55.000 5.56 0.00 36.32 3.59
1327 1358 1.298116 CGATAGAAACCGCGCTCGA 60.298 57.895 5.56 0.00 36.32 4.04
1328 1359 0.316442 TACGATAGAAACCGCGCTCG 60.316 55.000 5.56 7.94 41.38 5.03
1342 1373 6.711194 TCTCGAGATCCAATTTCTACTACGAT 59.289 38.462 12.08 0.00 0.00 3.73
1343 1374 6.053650 TCTCGAGATCCAATTTCTACTACGA 58.946 40.000 12.08 0.00 0.00 3.43
1365 1396 0.745128 CTGCGACTAGGACCGTCTCT 60.745 60.000 0.00 0.00 0.00 3.10
1382 1413 0.956633 TGCAAGAAGCCAAGAAGCTG 59.043 50.000 0.00 0.00 44.11 4.24
1387 1418 4.281688 AGCTAAATTTGCAAGAAGCCAAGA 59.718 37.500 16.13 0.00 44.83 3.02
1391 1422 3.174375 CGAGCTAAATTTGCAAGAAGCC 58.826 45.455 16.13 9.84 44.83 4.35
1406 1437 4.424626 CATCACAGAACTAAAGCGAGCTA 58.575 43.478 0.00 0.00 0.00 3.32
1411 1442 3.557595 GGATCCATCACAGAACTAAAGCG 59.442 47.826 6.95 0.00 0.00 4.68
1424 1455 1.043116 AACGGCGAGAGGATCCATCA 61.043 55.000 16.62 0.00 33.66 3.07
1425 1456 0.319125 GAACGGCGAGAGGATCCATC 60.319 60.000 16.62 10.66 33.66 3.51
1431 1462 0.895530 AAATCAGAACGGCGAGAGGA 59.104 50.000 16.62 6.20 0.00 3.71
1437 1468 5.627367 TGTCAAAATAAAAATCAGAACGGCG 59.373 36.000 4.80 4.80 0.00 6.46
1450 1481 9.296400 GAAGTAAAGTGCAGTTGTCAAAATAAA 57.704 29.630 7.73 0.00 0.00 1.40
1451 1482 8.682710 AGAAGTAAAGTGCAGTTGTCAAAATAA 58.317 29.630 7.73 0.00 0.00 1.40
1453 1484 6.974622 CAGAAGTAAAGTGCAGTTGTCAAAAT 59.025 34.615 7.73 0.00 0.00 1.82
1457 1488 4.332543 CACAGAAGTAAAGTGCAGTTGTCA 59.667 41.667 7.73 0.00 0.00 3.58
1458 1489 4.570772 TCACAGAAGTAAAGTGCAGTTGTC 59.429 41.667 7.73 4.30 33.44 3.18
1459 1490 4.513442 TCACAGAAGTAAAGTGCAGTTGT 58.487 39.130 7.73 0.00 33.44 3.32
1460 1491 5.065218 AGTTCACAGAAGTAAAGTGCAGTTG 59.935 40.000 7.73 0.00 33.44 3.16
1461 1492 5.065218 CAGTTCACAGAAGTAAAGTGCAGTT 59.935 40.000 0.00 0.00 33.44 3.16
1468 1535 9.443283 CATTTTTCTCAGTTCACAGAAGTAAAG 57.557 33.333 0.00 0.00 30.32 1.85
1470 1537 7.066887 TGCATTTTTCTCAGTTCACAGAAGTAA 59.933 33.333 0.00 0.00 30.32 2.24
1483 1553 3.755378 ACACTAGCCTGCATTTTTCTCAG 59.245 43.478 0.00 0.00 0.00 3.35
1498 1568 4.701171 AGGAGTACTCAGTACAACACTAGC 59.299 45.833 23.91 1.87 41.03 3.42
1509 1579 8.418597 TGTCATTAAGTTAAGGAGTACTCAGT 57.581 34.615 23.91 13.17 0.00 3.41
1519 1589 8.942338 TGCAGTAGTATGTCATTAAGTTAAGG 57.058 34.615 0.78 0.78 0.00 2.69
1526 1596 9.884636 AATGTACTTGCAGTAGTATGTCATTAA 57.115 29.630 9.48 0.00 33.49 1.40
1548 1618 8.149647 TGCTTTGATTAAGTTCCAATTGAATGT 58.850 29.630 7.12 0.00 36.19 2.71
1572 1644 2.728846 CGTGCCAGTACATCACATTTGC 60.729 50.000 11.07 0.00 0.00 3.68
1581 1653 5.950758 TTTTTATGTTCGTGCCAGTACAT 57.049 34.783 0.00 6.17 36.39 2.29
1592 1664 7.159437 TGCAGTTCAAACATTTTTATGTTCG 57.841 32.000 4.19 0.00 43.29 3.95
1607 1679 4.734398 ACAACCTGAAAATGCAGTTCAA 57.266 36.364 14.55 0.15 34.68 2.69
1630 1702 6.073058 TCGATCCACTTTCTCTTGTTCAAATG 60.073 38.462 0.00 0.00 0.00 2.32
1686 1758 0.251077 CTGAGCCAAGACTTTGCCCT 60.251 55.000 7.61 0.00 32.79 5.19
1740 1812 4.794278 TGTATCAAAGTAGAACTGCGGA 57.206 40.909 0.00 0.00 0.00 5.54
1749 1821 6.051717 AGCATAGCCACTTGTATCAAAGTAG 58.948 40.000 0.00 0.00 38.34 2.57
1776 1848 1.098050 GCCAAGCCAGTGGATAAGTG 58.902 55.000 15.20 1.26 41.65 3.16
1779 1851 0.698238 ACAGCCAAGCCAGTGGATAA 59.302 50.000 15.20 0.00 41.65 1.75
1817 1889 4.280929 TGATCGTGGGATAATGAGTGTAGG 59.719 45.833 0.00 0.00 31.51 3.18
1938 2010 6.512091 GCACCACTGTTTAACGATACTCAAAA 60.512 38.462 0.00 0.00 0.00 2.44
1941 2018 3.991773 GCACCACTGTTTAACGATACTCA 59.008 43.478 0.00 0.00 0.00 3.41
1951 2028 7.066887 CCAGATACAATAATGCACCACTGTTTA 59.933 37.037 0.00 0.00 0.00 2.01
2062 2146 8.540388 ACATATGTCAAGAACACTAACCATACT 58.460 33.333 1.41 0.00 41.75 2.12
2063 2147 8.718102 ACATATGTCAAGAACACTAACCATAC 57.282 34.615 1.41 0.00 41.75 2.39
2070 2154 8.999431 GGAAAGAAACATATGTCAAGAACACTA 58.001 33.333 9.23 0.00 41.75 2.74
2217 2301 4.207224 CGTCGAGATAACCAAATGCTACAG 59.793 45.833 0.00 0.00 0.00 2.74
2239 2323 5.856126 TCCAATTAGTACAGAACTTTGCG 57.144 39.130 0.00 0.00 39.80 4.85
2279 2363 7.552687 AGAACTTTGCATCGAGATAACCAAATA 59.447 33.333 0.00 0.00 0.00 1.40
2313 2397 3.119708 GCTACAGCCAAAAGAACATCCAG 60.120 47.826 0.00 0.00 34.31 3.86
2465 2549 2.815478 CTTCATACGCTCTGGGACTTC 58.185 52.381 0.00 0.00 0.00 3.01
2512 2596 1.913951 CTGGACATACCTGCAGGGCA 61.914 60.000 35.42 23.30 40.27 5.36
2547 2631 6.856426 CACATGATCACAGCACATAATTGATC 59.144 38.462 0.00 0.00 41.93 2.92
2605 2689 6.204882 GCCTAACAACAAGAACACAGAAGTAT 59.795 38.462 0.00 0.00 0.00 2.12
2614 2698 7.817418 AGATTTTAGCCTAACAACAAGAACA 57.183 32.000 0.00 0.00 0.00 3.18
2700 2784 2.171003 GTTGTTGATCTTTCCAGGGGG 58.829 52.381 0.00 0.00 0.00 5.40
2731 2815 5.242434 ACGGAACTGTGCAACTGATATAAA 58.758 37.500 0.00 0.00 39.30 1.40
2760 2844 7.843490 TGCAATAGTAAGTTGACATACCTTC 57.157 36.000 0.00 0.00 0.00 3.46
2916 3000 5.277011 GCAAATTGAAGTTTTGGCTTGAGAC 60.277 40.000 0.00 0.00 35.18 3.36
2920 3004 4.260866 CCAGCAAATTGAAGTTTTGGCTTG 60.261 41.667 0.00 0.00 35.18 4.01
2986 3070 1.554160 AGCTCCACAGATCTGTCCTTG 59.446 52.381 25.58 14.09 42.83 3.61
3058 3142 9.110502 AGTGGTTTCTAACTCTAGTTTTGAAAG 57.889 33.333 16.73 4.48 38.54 2.62
3070 3154 7.428472 CGACAAAGAAAAAGTGGTTTCTAACTC 59.572 37.037 0.89 0.00 45.09 3.01
3073 3157 7.120138 ACTCGACAAAGAAAAAGTGGTTTCTAA 59.880 33.333 0.89 0.00 45.09 2.10
3109 3193 7.776969 AGGTCTCTGTTTCATGCAATAACATAT 59.223 33.333 10.74 0.00 0.00 1.78
3113 3197 5.392380 CCAGGTCTCTGTTTCATGCAATAAC 60.392 44.000 0.00 0.00 39.31 1.89
3148 3232 1.757423 GCCCACAAATTGCACCACCT 61.757 55.000 0.00 0.00 0.00 4.00
3208 3292 0.036105 CACCAGCAGCCATGTACTCA 60.036 55.000 0.00 0.00 0.00 3.41
3260 3344 5.426509 AGGACATCAACCAGAGATCAATACA 59.573 40.000 0.00 0.00 0.00 2.29
3261 3345 5.923204 AGGACATCAACCAGAGATCAATAC 58.077 41.667 0.00 0.00 0.00 1.89
3304 3388 3.293311 AGTACAAAGCATGCAAAGCAG 57.707 42.857 21.98 5.78 43.65 4.24
3309 3393 5.185454 ACAGCTATAGTACAAAGCATGCAA 58.815 37.500 21.98 0.00 38.75 4.08
3339 3423 3.004944 GCAATCCGTAACCCAAAACTTCA 59.995 43.478 0.00 0.00 0.00 3.02
3380 3464 5.163874 TGTTGTTCACAGCAAAGAAAAATGC 60.164 36.000 0.00 0.00 42.87 3.56
3428 3512 8.024145 ACCTTTGACACCCAAAAATTACAATA 57.976 30.769 0.00 0.00 43.50 1.90
3433 3517 6.042208 CCCTTACCTTTGACACCCAAAAATTA 59.958 38.462 0.00 0.00 43.50 1.40
3458 3542 8.831550 GTTCATGGTTCTAGTAATTCATCCTTC 58.168 37.037 0.00 0.00 0.00 3.46
3461 3545 6.202954 CGGTTCATGGTTCTAGTAATTCATCC 59.797 42.308 0.00 0.00 0.00 3.51
3470 3554 4.345859 TTGTTCGGTTCATGGTTCTAGT 57.654 40.909 0.00 0.00 0.00 2.57
3489 3573 2.089201 TCAGATCCAAGTGCAGCATTG 58.911 47.619 0.00 4.54 0.00 2.82
3490 3574 2.502142 TCAGATCCAAGTGCAGCATT 57.498 45.000 0.00 0.00 0.00 3.56
3505 3589 4.763073 ACGATCAATTTCAGCAGATCAGA 58.237 39.130 0.00 0.00 37.36 3.27
3518 3637 6.866480 AGGCAATGTTATGAAACGATCAATT 58.134 32.000 0.00 0.00 42.54 2.32
3747 3866 1.070175 ACCGCGTTTGTGAAATCTTCG 60.070 47.619 4.92 0.00 0.00 3.79
3827 3947 4.080751 TCTGAATCTCCATCATGCAGAACA 60.081 41.667 0.00 0.00 0.00 3.18
3832 3952 2.775960 ACCTCTGAATCTCCATCATGCA 59.224 45.455 0.00 0.00 0.00 3.96
3848 3968 1.818642 GCAGATGCACTCAAACCTCT 58.181 50.000 0.00 0.00 41.59 3.69
3998 4118 3.705579 TCAGATATTGGGGCCAAAATGTG 59.294 43.478 4.39 6.28 39.55 3.21
4000 4120 4.406649 AGTTCAGATATTGGGGCCAAAATG 59.593 41.667 4.39 0.00 39.55 2.32
4028 4159 5.232463 GTGTTCATGCATGGAGTTGAATTT 58.768 37.500 25.97 0.00 31.39 1.82
4079 4210 8.515414 GCTTACAAGAATCTTTCCACACTAATT 58.485 33.333 0.00 0.00 0.00 1.40
4080 4211 7.121315 GGCTTACAAGAATCTTTCCACACTAAT 59.879 37.037 0.00 0.00 0.00 1.73
4081 4212 6.430000 GGCTTACAAGAATCTTTCCACACTAA 59.570 38.462 0.00 0.00 0.00 2.24
4082 4213 5.938125 GGCTTACAAGAATCTTTCCACACTA 59.062 40.000 0.00 0.00 0.00 2.74
4123 4254 2.425592 CCACCAACAGGCGTCAGA 59.574 61.111 0.00 0.00 0.00 3.27
4161 4292 4.335735 TTCCATCAGTTTTCCCATGGAT 57.664 40.909 15.22 0.00 43.47 3.41
4196 4327 3.134081 CCCCTTTCGTCATACTACATGGT 59.866 47.826 0.00 0.00 0.00 3.55
4201 4332 4.646492 TCCTAACCCCTTTCGTCATACTAC 59.354 45.833 0.00 0.00 0.00 2.73
4202 4333 4.646492 GTCCTAACCCCTTTCGTCATACTA 59.354 45.833 0.00 0.00 0.00 1.82
4203 4334 3.450096 GTCCTAACCCCTTTCGTCATACT 59.550 47.826 0.00 0.00 0.00 2.12
4294 4432 9.121658 TGAAACTAGTACGTATGAGATTCAGAT 57.878 33.333 19.48 0.00 30.22 2.90
4306 4444 8.496707 TCATCTACACATGAAACTAGTACGTA 57.503 34.615 0.00 0.00 29.41 3.57
4307 4445 7.120873 ACTCATCTACACATGAAACTAGTACGT 59.879 37.037 0.00 0.00 32.24 3.57
4308 4446 7.473366 ACTCATCTACACATGAAACTAGTACG 58.527 38.462 0.00 0.00 32.24 3.67
4309 4447 9.291664 GAACTCATCTACACATGAAACTAGTAC 57.708 37.037 0.00 0.00 32.24 2.73
4310 4448 9.244292 AGAACTCATCTACACATGAAACTAGTA 57.756 33.333 0.00 0.00 36.32 1.82
4311 4449 8.128322 AGAACTCATCTACACATGAAACTAGT 57.872 34.615 0.00 0.00 36.32 2.57
4325 4463 7.233389 AGTGCTTCAAAGTAGAACTCATCTA 57.767 36.000 0.00 0.00 39.71 1.98
4570 4712 2.373707 GCTGTGGAGCTCCCTGGAT 61.374 63.158 29.95 0.00 42.52 3.41
4708 4850 0.765903 ATCATGGCACGGAGGAGGAT 60.766 55.000 0.00 0.00 0.00 3.24
4746 4888 0.034616 GGAGCAATCCTCGGGATCAG 59.965 60.000 5.97 4.18 42.27 2.90
4748 4890 1.005630 CGGAGCAATCCTCGGGATC 60.006 63.158 5.97 0.00 42.27 3.36
4749 4891 0.833834 ATCGGAGCAATCCTCGGGAT 60.834 55.000 0.05 0.05 45.46 3.85
4750 4892 1.457643 ATCGGAGCAATCCTCGGGA 60.458 57.895 0.00 0.00 41.71 5.14
4751 4893 1.301244 CATCGGAGCAATCCTCGGG 60.301 63.158 0.00 0.00 41.71 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.