Multiple sequence alignment - TraesCS5B01G076600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G076600 chr5B 100.000 2780 0 0 1 2780 92230422 92227643 0.000000e+00 5134.0
1 TraesCS5B01G076600 chr5B 100.000 148 0 0 3170 3317 92227253 92227106 1.170000e-69 274.0
2 TraesCS5B01G076600 chr5B 95.604 91 3 1 1243 1333 396067900 396067989 9.590000e-31 145.0
3 TraesCS5B01G076600 chr5B 93.684 95 6 0 658 752 245963787 245963881 3.450000e-30 143.0
4 TraesCS5B01G076600 chr5D 93.088 1577 90 9 751 2318 84889436 84891002 0.000000e+00 2290.0
5 TraesCS5B01G076600 chr5D 88.136 118 11 3 3170 3285 504926707 504926823 1.600000e-28 137.0
6 TraesCS5B01G076600 chr5D 93.056 72 2 3 1 70 84877344 84877414 5.850000e-18 102.0
7 TraesCS5B01G076600 chr5A 91.736 1573 84 20 757 2318 79280560 79282097 0.000000e+00 2143.0
8 TraesCS5B01G076600 chr5A 83.025 324 38 11 1 313 79279098 79279415 9.060000e-71 278.0
9 TraesCS5B01G076600 chr5A 84.211 95 12 2 2388 2479 706500521 706500427 4.560000e-14 89.8
10 TraesCS5B01G076600 chr5A 100.000 40 0 0 2435 2474 530312881 530312920 1.280000e-09 75.0
11 TraesCS5B01G076600 chr3B 95.960 198 5 3 2583 2780 780261270 780261076 5.340000e-83 318.0
12 TraesCS5B01G076600 chr3B 94.355 124 6 1 402 525 132389822 132389700 4.370000e-44 189.0
13 TraesCS5B01G076600 chr3B 91.000 100 9 0 658 757 60736787 60736886 5.770000e-28 135.0
14 TraesCS5B01G076600 chr3B 86.250 80 10 1 2396 2474 647175922 647176001 5.900000e-13 86.1
15 TraesCS5B01G076600 chr3B 88.060 67 6 2 523 588 817063674 817063739 9.870000e-11 78.7
16 TraesCS5B01G076600 chr6B 94.203 138 7 1 3180 3317 91036514 91036650 3.350000e-50 209.0
17 TraesCS5B01G076600 chr6B 94.355 124 7 0 405 528 44106527 44106404 1.210000e-44 191.0
18 TraesCS5B01G076600 chr6B 92.800 125 9 0 405 529 470914946 470914822 7.310000e-42 182.0
19 TraesCS5B01G076600 chr6B 92.929 99 7 0 658 756 712110070 712110168 9.590000e-31 145.0
20 TraesCS5B01G076600 chr4B 94.444 126 7 0 398 523 612251086 612251211 9.390000e-46 195.0
21 TraesCS5B01G076600 chr4B 93.684 95 6 0 658 752 657303858 657303764 3.450000e-30 143.0
22 TraesCS5B01G076600 chr4B 84.000 100 9 4 2388 2480 667625684 667625783 4.560000e-14 89.8
23 TraesCS5B01G076600 chr1B 94.958 119 6 0 404 522 368556705 368556587 1.570000e-43 187.0
24 TraesCS5B01G076600 chr1B 94.872 117 6 0 405 521 130628880 130628764 2.030000e-42 183.0
25 TraesCS5B01G076600 chr1B 92.800 125 7 2 397 521 583149515 583149637 2.630000e-41 180.0
26 TraesCS5B01G076600 chr1B 92.929 99 6 1 658 755 681719610 681719512 3.450000e-30 143.0
27 TraesCS5B01G076600 chr1B 92.784 97 7 0 657 753 589044752 589044656 1.240000e-29 141.0
28 TraesCS5B01G076600 chr1B 86.154 65 8 1 2416 2479 662581169 662581233 5.940000e-08 69.4
29 TraesCS5B01G076600 chr2B 93.548 124 7 1 404 527 658228189 658228311 2.030000e-42 183.0
30 TraesCS5B01G076600 chr2B 88.298 94 9 2 2387 2478 243784658 243784751 9.730000e-21 111.0
31 TraesCS5B01G076600 chr2B 83.333 96 14 2 2387 2480 545259442 545259347 1.640000e-13 87.9
32 TraesCS5B01G076600 chr2B 81.373 102 16 3 2381 2480 689712330 689712230 2.740000e-11 80.5
33 TraesCS5B01G076600 chr4A 92.188 128 9 1 404 531 660714406 660714280 2.630000e-41 180.0
34 TraesCS5B01G076600 chr4A 90.196 102 10 0 658 759 668587916 668587815 2.080000e-27 134.0
35 TraesCS5B01G076600 chr4A 87.097 62 6 2 2409 2468 591855723 591855784 5.940000e-08 69.4
36 TraesCS5B01G076600 chr3D 92.857 98 7 0 658 755 439679582 439679485 3.450000e-30 143.0
37 TraesCS5B01G076600 chr3D 92.708 96 7 0 658 753 401178954 401179049 4.460000e-29 139.0
38 TraesCS5B01G076600 chr3D 100.000 31 0 0 2450 2480 505782117 505782147 1.290000e-04 58.4
39 TraesCS5B01G076600 chr7A 81.197 117 18 2 293 408 161647078 161646965 1.270000e-14 91.6
40 TraesCS5B01G076600 chr7A 91.304 46 3 1 514 558 134996988 134997033 9.940000e-06 62.1
41 TraesCS5B01G076600 chr7A 87.037 54 5 2 508 561 135001612 135001663 3.570000e-05 60.2
42 TraesCS5B01G076600 chr3A 88.732 71 7 1 520 590 690435772 690435841 5.900000e-13 86.1
43 TraesCS5B01G076600 chr3A 85.075 67 8 2 523 588 739801595 739801660 2.140000e-07 67.6
44 TraesCS5B01G076600 chr2A 83.158 95 14 2 2387 2479 607821112 607821018 5.900000e-13 86.1
45 TraesCS5B01G076600 chr2A 84.337 83 12 1 2395 2476 200620768 200620850 2.740000e-11 80.5
46 TraesCS5B01G076600 chr2D 83.908 87 11 2 2395 2479 187642525 187642610 2.740000e-11 80.5
47 TraesCS5B01G076600 chr6D 84.507 71 11 0 2408 2478 439385 439315 1.650000e-08 71.3
48 TraesCS5B01G076600 chr7D 88.136 59 5 2 510 568 135974764 135974820 5.940000e-08 69.4
49 TraesCS5B01G076600 chr7D 86.885 61 7 1 520 580 56524886 56524945 2.140000e-07 67.6
50 TraesCS5B01G076600 chr7D 88.462 52 5 1 511 561 135944298 135944349 9.940000e-06 62.1
51 TraesCS5B01G076600 chr7B 77.049 122 15 9 282 402 71653700 71653809 1.290000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G076600 chr5B 92227106 92230422 3316 True 2704.0 5134 100.0000 1 3317 2 chr5B.!!$R1 3316
1 TraesCS5B01G076600 chr5D 84889436 84891002 1566 False 2290.0 2290 93.0880 751 2318 1 chr5D.!!$F2 1567
2 TraesCS5B01G076600 chr5A 79279098 79282097 2999 False 1210.5 2143 87.3805 1 2318 2 chr5A.!!$F2 2317

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
523 536 0.038744 TCCGAACGGAGGGAGTACTT 59.961 55.0 12.04 0.0 39.76 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2360 3113 0.035152 AACAATGGGATCAGAGCGCA 60.035 50.0 11.47 8.0 0.0 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 87 6.369005 TGTTTTGTTGCTTGTGTGATTTTTG 58.631 32.000 0.00 0.00 0.00 2.44
85 98 3.118847 TGCTTGTGTGATTTTTGGCTTGA 60.119 39.130 0.00 0.00 0.00 3.02
89 102 6.458615 GCTTGTGTGATTTTTGGCTTGAATTT 60.459 34.615 0.00 0.00 0.00 1.82
101 114 6.849085 TGGCTTGAATTTGCTATTCCTTAA 57.151 33.333 8.88 0.00 0.00 1.85
144 157 7.296856 TCTTAATGCAATATTCAGATGGGGAA 58.703 34.615 0.00 0.00 0.00 3.97
206 219 7.728847 AAAAAGATTGTAAAACCTGAATGGC 57.271 32.000 0.00 0.00 40.22 4.40
220 233 4.202609 CCTGAATGGCATAGATAAAGGGGT 60.203 45.833 0.00 0.00 0.00 4.95
225 238 3.525609 TGGCATAGATAAAGGGGTGTGAA 59.474 43.478 0.00 0.00 0.00 3.18
230 243 6.688922 GCATAGATAAAGGGGTGTGAATGAGA 60.689 42.308 0.00 0.00 0.00 3.27
235 248 0.693049 GGGGTGTGAATGAGACAGGT 59.307 55.000 0.00 0.00 0.00 4.00
241 254 3.868077 GTGTGAATGAGACAGGTCATAGC 59.132 47.826 1.84 0.00 36.07 2.97
246 259 1.112113 GAGACAGGTCATAGCGGGAA 58.888 55.000 1.84 0.00 0.00 3.97
249 262 2.029623 GACAGGTCATAGCGGGAAGTA 58.970 52.381 0.00 0.00 0.00 2.24
250 263 2.628657 GACAGGTCATAGCGGGAAGTAT 59.371 50.000 0.00 0.00 0.00 2.12
262 275 6.481434 AGCGGGAAGTATCATAAACTAGTT 57.519 37.500 1.12 1.12 0.00 2.24
263 276 7.592885 AGCGGGAAGTATCATAAACTAGTTA 57.407 36.000 8.92 0.00 0.00 2.24
301 314 7.485825 TGTATACAATGCAATTTCGTTTTCG 57.514 32.000 2.20 0.00 38.67 3.46
305 318 4.564769 ACAATGCAATTTCGTTTTCGTGTT 59.435 33.333 0.00 0.00 38.51 3.32
313 326 7.159659 GCAATTTCGTTTTCGTGTTAAACTTTG 59.840 33.333 0.00 0.00 44.46 2.77
314 327 8.366666 CAATTTCGTTTTCGTGTTAAACTTTGA 58.633 29.630 0.00 0.00 44.46 2.69
315 328 8.623310 ATTTCGTTTTCGTGTTAAACTTTGAT 57.377 26.923 0.00 0.00 44.46 2.57
316 329 8.450385 TTTCGTTTTCGTGTTAAACTTTGATT 57.550 26.923 0.00 0.00 44.46 2.57
317 330 8.450385 TTCGTTTTCGTGTTAAACTTTGATTT 57.550 26.923 0.00 0.00 44.46 2.17
318 331 9.552114 TTCGTTTTCGTGTTAAACTTTGATTTA 57.448 25.926 0.00 0.00 44.46 1.40
319 332 9.719279 TCGTTTTCGTGTTAAACTTTGATTTAT 57.281 25.926 0.00 0.00 44.46 1.40
346 359 9.767228 AATTATGGTTAACAAAACAAGGGTTAC 57.233 29.630 8.10 0.00 35.82 2.50
347 360 6.793505 ATGGTTAACAAAACAAGGGTTACA 57.206 33.333 8.10 0.00 35.82 2.41
355 368 5.186021 ACAAAACAAGGGTTACATGTCACAA 59.814 36.000 12.06 0.00 35.82 3.33
357 370 5.923733 AACAAGGGTTACATGTCACAAAA 57.076 34.783 12.06 0.00 34.87 2.44
358 371 5.514274 ACAAGGGTTACATGTCACAAAAG 57.486 39.130 12.06 2.27 0.00 2.27
360 373 5.833131 ACAAGGGTTACATGTCACAAAAGAT 59.167 36.000 12.06 0.00 0.00 2.40
362 375 7.174946 ACAAGGGTTACATGTCACAAAAGATAG 59.825 37.037 12.06 0.00 0.00 2.08
396 409 7.359181 CCGAAAAGTTCTTTAAAATGTGCATCC 60.359 37.037 0.00 0.00 0.00 3.51
401 414 7.669427 AGTTCTTTAAAATGTGCATCCAATGA 58.331 30.769 0.00 0.00 0.00 2.57
402 415 7.599998 AGTTCTTTAAAATGTGCATCCAATGAC 59.400 33.333 0.00 0.00 0.00 3.06
404 417 7.613585 TCTTTAAAATGTGCATCCAATGACAT 58.386 30.769 0.00 0.00 34.67 3.06
406 419 8.700722 TTTAAAATGTGCATCCAATGACATAC 57.299 30.769 0.00 0.00 33.66 2.39
409 422 3.544684 TGTGCATCCAATGACATACTCC 58.455 45.455 0.00 0.00 0.00 3.85
410 423 2.880890 GTGCATCCAATGACATACTCCC 59.119 50.000 0.00 0.00 0.00 4.30
411 424 2.779430 TGCATCCAATGACATACTCCCT 59.221 45.455 0.00 0.00 0.00 4.20
412 425 3.181451 TGCATCCAATGACATACTCCCTC 60.181 47.826 0.00 0.00 0.00 4.30
414 427 3.129262 TCCAATGACATACTCCCTCCA 57.871 47.619 0.00 0.00 0.00 3.86
415 428 3.668821 TCCAATGACATACTCCCTCCAT 58.331 45.455 0.00 0.00 0.00 3.41
417 430 4.103153 TCCAATGACATACTCCCTCCATTC 59.897 45.833 0.00 0.00 0.00 2.67
419 432 3.026707 TGACATACTCCCTCCATTCGA 57.973 47.619 0.00 0.00 0.00 3.71
421 434 3.772572 TGACATACTCCCTCCATTCGAAA 59.227 43.478 0.00 0.00 0.00 3.46
422 435 4.408921 TGACATACTCCCTCCATTCGAAAT 59.591 41.667 0.00 0.00 0.00 2.17
423 436 5.104527 TGACATACTCCCTCCATTCGAAATT 60.105 40.000 0.00 0.00 0.00 1.82
424 437 6.099125 TGACATACTCCCTCCATTCGAAATTA 59.901 38.462 0.00 0.00 0.00 1.40
425 438 6.289064 ACATACTCCCTCCATTCGAAATTAC 58.711 40.000 0.00 0.00 0.00 1.89
427 440 5.437191 ACTCCCTCCATTCGAAATTACTT 57.563 39.130 0.00 0.00 0.00 2.24
428 441 5.186198 ACTCCCTCCATTCGAAATTACTTG 58.814 41.667 0.00 0.00 0.00 3.16
429 442 3.945285 TCCCTCCATTCGAAATTACTTGC 59.055 43.478 0.00 0.00 0.00 4.01
430 443 3.066760 CCCTCCATTCGAAATTACTTGCC 59.933 47.826 0.00 0.00 0.00 4.52
431 444 3.694072 CCTCCATTCGAAATTACTTGCCA 59.306 43.478 0.00 0.00 0.00 4.92
432 445 4.438744 CCTCCATTCGAAATTACTTGCCAC 60.439 45.833 0.00 0.00 0.00 5.01
433 446 4.075682 TCCATTCGAAATTACTTGCCACA 58.924 39.130 0.00 0.00 0.00 4.17
435 448 5.010112 TCCATTCGAAATTACTTGCCACAAA 59.990 36.000 0.00 0.00 0.00 2.83
436 449 5.694006 CCATTCGAAATTACTTGCCACAAAA 59.306 36.000 0.00 0.00 0.00 2.44
438 451 7.095271 CCATTCGAAATTACTTGCCACAAAAAT 60.095 33.333 0.00 0.00 0.00 1.82
439 452 6.761731 TCGAAATTACTTGCCACAAAAATG 57.238 33.333 0.00 0.00 0.00 2.32
443 456 7.543868 CGAAATTACTTGCCACAAAAATGGATA 59.456 33.333 0.00 0.00 43.02 2.59
444 457 9.213799 GAAATTACTTGCCACAAAAATGGATAA 57.786 29.630 0.00 0.00 43.02 1.75
445 458 9.566432 AAATTACTTGCCACAAAAATGGATAAA 57.434 25.926 0.00 0.00 43.02 1.40
448 461 7.008021 ACTTGCCACAAAAATGGATAAAGAT 57.992 32.000 0.00 0.00 43.02 2.40
451 464 7.002250 TGCCACAAAAATGGATAAAGATGAA 57.998 32.000 0.00 0.00 43.02 2.57
452 465 7.622713 TGCCACAAAAATGGATAAAGATGAAT 58.377 30.769 0.00 0.00 43.02 2.57
453 466 7.549842 TGCCACAAAAATGGATAAAGATGAATG 59.450 33.333 0.00 0.00 43.02 2.67
499 512 9.521503 TCTAGATACATTCATTTCTTGAACGAG 57.478 33.333 0.00 0.00 46.80 4.18
500 513 9.307121 CTAGATACATTCATTTCTTGAACGAGT 57.693 33.333 0.00 0.00 46.80 4.18
502 515 9.653287 AGATACATTCATTTCTTGAACGAGTAA 57.347 29.630 0.00 0.00 46.80 2.24
506 519 8.237267 ACATTCATTTCTTGAACGAGTAATTCC 58.763 33.333 0.00 0.00 46.80 3.01
507 520 6.403333 TCATTTCTTGAACGAGTAATTCCG 57.597 37.500 0.00 0.00 0.00 4.30
510 523 5.834239 TTCTTGAACGAGTAATTCCGAAC 57.166 39.130 0.00 0.00 0.00 3.95
511 524 3.916172 TCTTGAACGAGTAATTCCGAACG 59.084 43.478 0.00 0.00 0.00 3.95
512 525 2.598589 TGAACGAGTAATTCCGAACGG 58.401 47.619 6.94 6.94 0.00 4.44
513 526 2.228582 TGAACGAGTAATTCCGAACGGA 59.771 45.455 12.04 12.04 43.52 4.69
514 527 2.556534 ACGAGTAATTCCGAACGGAG 57.443 50.000 15.34 5.60 46.06 4.63
515 528 1.133790 ACGAGTAATTCCGAACGGAGG 59.866 52.381 15.34 4.28 46.06 4.30
516 529 1.535437 CGAGTAATTCCGAACGGAGGG 60.535 57.143 15.34 0.00 46.06 4.30
517 530 1.753073 GAGTAATTCCGAACGGAGGGA 59.247 52.381 15.34 2.49 46.06 4.20
518 531 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
519 532 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
521 534 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
523 536 0.038744 TCCGAACGGAGGGAGTACTT 59.961 55.000 12.04 0.00 39.76 2.24
527 1115 3.056607 CCGAACGGAGGGAGTACTTTTTA 60.057 47.826 7.53 0.00 37.50 1.52
536 1124 7.931948 CGGAGGGAGTACTTTTTAATGACATAT 59.068 37.037 0.00 0.00 0.00 1.78
596 1185 9.614792 AGTTAGACATAAAAATATGAGGTGGAC 57.385 33.333 3.03 0.00 0.00 4.02
630 1219 1.212250 AATACACACCCCTCACCCCC 61.212 60.000 0.00 0.00 0.00 5.40
632 1221 2.424989 TACACACCCCTCACCCCCAT 62.425 60.000 0.00 0.00 0.00 4.00
638 1227 4.802051 CCTCACCCCCATGCGTGG 62.802 72.222 18.73 18.73 45.61 4.94
737 1326 6.737254 TTCATTTCTTGGACGAGTAATTCC 57.263 37.500 0.00 0.00 0.00 3.01
739 1328 4.524316 TTTCTTGGACGAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
740 1329 4.524316 TTCTTGGACGAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
742 1331 2.267188 TGGACGAGTAATTCCGAACG 57.733 50.000 0.00 0.00 0.00 3.95
744 1333 2.228582 TGGACGAGTAATTCCGAACGAA 59.771 45.455 0.00 0.00 34.14 3.85
745 1334 2.850647 GGACGAGTAATTCCGAACGAAG 59.149 50.000 0.00 0.00 32.78 3.79
746 1335 2.850647 GACGAGTAATTCCGAACGAAGG 59.149 50.000 0.00 0.00 32.78 3.46
747 1336 2.190981 CGAGTAATTCCGAACGAAGGG 58.809 52.381 0.00 0.00 32.78 3.95
748 1337 2.159338 CGAGTAATTCCGAACGAAGGGA 60.159 50.000 0.00 0.00 32.78 4.20
765 1500 1.212616 GGAGTAGATGTCACGCATGC 58.787 55.000 7.91 7.91 38.06 4.06
781 1516 3.058160 GCTGCCACTGCGGTCATT 61.058 61.111 0.00 0.00 46.11 2.57
794 1529 1.267038 CGGTCATTTTCAGCGTCGATG 60.267 52.381 3.58 3.58 0.00 3.84
827 1562 8.526147 GTGACTGGTAATTTGTAGGTCTACTAA 58.474 37.037 9.24 8.22 37.00 2.24
857 1592 4.056740 CAAACTATTTGTGCATTGCCACA 58.943 39.130 6.12 7.88 43.48 4.17
881 1616 8.153550 ACACATTATCTATCCTCAAGAATGTCC 58.846 37.037 0.00 0.00 27.15 4.02
882 1617 8.152898 CACATTATCTATCCTCAAGAATGTCCA 58.847 37.037 0.00 0.00 27.15 4.02
883 1618 8.717717 ACATTATCTATCCTCAAGAATGTCCAA 58.282 33.333 0.00 0.00 0.00 3.53
884 1619 8.997323 CATTATCTATCCTCAAGAATGTCCAAC 58.003 37.037 0.00 0.00 0.00 3.77
886 1621 6.566079 TCTATCCTCAAGAATGTCCAACAT 57.434 37.500 0.00 0.00 41.31 2.71
892 1629 5.530171 CCTCAAGAATGTCCAACATGATAGG 59.470 44.000 0.00 0.00 37.97 2.57
900 1637 5.337894 ATGTCCAACATGATAGGATCGATCC 60.338 44.000 33.14 33.14 41.37 3.36
940 1677 2.571757 GCCACTCGATCGTCACCA 59.428 61.111 15.94 0.00 0.00 4.17
943 1680 1.092348 CCACTCGATCGTCACCAGTA 58.908 55.000 15.94 0.00 0.00 2.74
988 1732 1.841450 GAGCGAACAGGGTCTAATCG 58.159 55.000 0.00 0.00 36.64 3.34
994 1738 2.935481 ACAGGGTCTAATCGAACGTC 57.065 50.000 0.00 0.00 0.00 4.34
1016 1760 0.943835 AAAATGGCGCGAACTTTGGC 60.944 50.000 12.10 0.00 0.00 4.52
1122 1872 2.663196 GACAAGGCGGGCTACACT 59.337 61.111 3.84 0.00 0.00 3.55
1553 2303 0.402121 GAGGCCTTCACCTTCCAGTT 59.598 55.000 6.77 0.00 41.32 3.16
1600 2350 1.216444 GTGAGCCTGACGCAGATCA 59.784 57.895 8.20 8.74 41.38 2.92
1698 2448 2.548067 CGCCACAAAGTTCTCCTACTGT 60.548 50.000 0.00 0.00 0.00 3.55
1711 2461 2.590611 TCCTACTGTCTCACCCCCTATT 59.409 50.000 0.00 0.00 0.00 1.73
1849 2602 2.830321 ACGTTCTACTACCTCCCTTTGG 59.170 50.000 0.00 0.00 0.00 3.28
1850 2603 2.830321 CGTTCTACTACCTCCCTTTGGT 59.170 50.000 0.00 0.00 41.28 3.67
1913 2666 3.760035 GTTCGAGCTCAGGCGGGA 61.760 66.667 15.40 0.00 44.37 5.14
1969 2722 4.415150 CCGGCAGCCCTGTCACAT 62.415 66.667 5.63 0.00 34.22 3.21
2019 2772 2.747686 GAGGAAGTGACCCGGCAA 59.252 61.111 0.00 0.00 0.00 4.52
2027 2780 2.112297 GACCCGGCAACTGAACCA 59.888 61.111 0.00 0.00 0.00 3.67
2028 2781 1.303317 GACCCGGCAACTGAACCAT 60.303 57.895 0.00 0.00 0.00 3.55
2088 2841 3.276846 GTGGCACGGCAAGACGTT 61.277 61.111 0.00 0.00 46.25 3.99
2089 2842 1.957186 GTGGCACGGCAAGACGTTA 60.957 57.895 0.00 0.00 46.25 3.18
2318 3071 2.814341 CTGCAGCGTGCTCTGAGG 60.814 66.667 0.00 0.00 45.31 3.86
2320 3073 4.756458 GCAGCGTGCTCTGAGGCT 62.756 66.667 6.83 3.98 40.96 4.58
2321 3074 2.508887 CAGCGTGCTCTGAGGCTC 60.509 66.667 7.79 7.79 34.89 4.70
2322 3075 2.679642 AGCGTGCTCTGAGGCTCT 60.680 61.111 16.72 0.00 31.46 4.09
2323 3076 2.508887 GCGTGCTCTGAGGCTCTG 60.509 66.667 16.72 15.59 0.00 3.35
2324 3077 2.999485 GCGTGCTCTGAGGCTCTGA 61.999 63.158 20.91 20.91 0.00 3.27
2325 3078 1.139308 CGTGCTCTGAGGCTCTGAG 59.861 63.158 34.29 34.29 42.93 3.35
2335 3088 2.686835 GCTCTGAGCCCCTCACCT 60.687 66.667 18.80 0.00 35.39 4.00
2336 3089 2.297129 GCTCTGAGCCCCTCACCTT 61.297 63.158 18.80 0.00 35.39 3.50
2337 3090 1.601171 CTCTGAGCCCCTCACCTTG 59.399 63.158 0.00 0.00 35.39 3.61
2338 3091 2.045536 CTGAGCCCCTCACCTTGC 60.046 66.667 0.00 0.00 35.39 4.01
2339 3092 2.530151 TGAGCCCCTCACCTTGCT 60.530 61.111 0.00 0.00 35.39 3.91
2340 3093 2.134630 CTGAGCCCCTCACCTTGCTT 62.135 60.000 0.00 0.00 35.39 3.91
2341 3094 1.676967 GAGCCCCTCACCTTGCTTG 60.677 63.158 0.00 0.00 33.41 4.01
2342 3095 2.116125 GCCCCTCACCTTGCTTGT 59.884 61.111 0.00 0.00 0.00 3.16
2343 3096 2.270986 GCCCCTCACCTTGCTTGTG 61.271 63.158 0.00 0.00 35.01 3.33
2344 3097 1.151450 CCCCTCACCTTGCTTGTGT 59.849 57.895 0.00 0.00 35.25 3.72
2345 3098 1.174712 CCCCTCACCTTGCTTGTGTG 61.175 60.000 0.00 0.00 35.25 3.82
2346 3099 0.466189 CCCTCACCTTGCTTGTGTGT 60.466 55.000 0.00 0.00 35.25 3.72
2347 3100 0.947244 CCTCACCTTGCTTGTGTGTC 59.053 55.000 0.00 0.00 35.25 3.67
2348 3101 0.947244 CTCACCTTGCTTGTGTGTCC 59.053 55.000 0.00 0.00 35.25 4.02
2349 3102 0.546122 TCACCTTGCTTGTGTGTCCT 59.454 50.000 0.00 0.00 35.25 3.85
2350 3103 0.947244 CACCTTGCTTGTGTGTCCTC 59.053 55.000 0.00 0.00 0.00 3.71
2351 3104 0.839946 ACCTTGCTTGTGTGTCCTCT 59.160 50.000 0.00 0.00 0.00 3.69
2352 3105 1.202698 ACCTTGCTTGTGTGTCCTCTC 60.203 52.381 0.00 0.00 0.00 3.20
2353 3106 1.071385 CCTTGCTTGTGTGTCCTCTCT 59.929 52.381 0.00 0.00 0.00 3.10
2354 3107 2.300152 CCTTGCTTGTGTGTCCTCTCTA 59.700 50.000 0.00 0.00 0.00 2.43
2355 3108 3.321497 CTTGCTTGTGTGTCCTCTCTAC 58.679 50.000 0.00 0.00 0.00 2.59
2356 3109 2.598565 TGCTTGTGTGTCCTCTCTACT 58.401 47.619 0.00 0.00 0.00 2.57
2357 3110 2.297315 TGCTTGTGTGTCCTCTCTACTG 59.703 50.000 0.00 0.00 0.00 2.74
2358 3111 2.297597 GCTTGTGTGTCCTCTCTACTGT 59.702 50.000 0.00 0.00 0.00 3.55
2359 3112 3.506455 GCTTGTGTGTCCTCTCTACTGTA 59.494 47.826 0.00 0.00 0.00 2.74
2360 3113 4.158764 GCTTGTGTGTCCTCTCTACTGTAT 59.841 45.833 0.00 0.00 0.00 2.29
2361 3114 5.644977 TTGTGTGTCCTCTCTACTGTATG 57.355 43.478 0.00 0.00 0.00 2.39
2362 3115 3.444034 TGTGTGTCCTCTCTACTGTATGC 59.556 47.826 0.00 0.00 0.00 3.14
2363 3116 2.683362 TGTGTCCTCTCTACTGTATGCG 59.317 50.000 0.00 0.00 0.00 4.73
2364 3117 1.676529 TGTCCTCTCTACTGTATGCGC 59.323 52.381 0.00 0.00 0.00 6.09
2365 3118 1.950909 GTCCTCTCTACTGTATGCGCT 59.049 52.381 9.73 0.00 0.00 5.92
2366 3119 2.031508 GTCCTCTCTACTGTATGCGCTC 60.032 54.545 9.73 0.00 0.00 5.03
2367 3120 2.158740 TCCTCTCTACTGTATGCGCTCT 60.159 50.000 9.73 0.00 0.00 4.09
2368 3121 2.031245 CCTCTCTACTGTATGCGCTCTG 60.031 54.545 9.73 6.09 0.00 3.35
2369 3122 2.875317 CTCTCTACTGTATGCGCTCTGA 59.125 50.000 9.73 0.00 0.00 3.27
2370 3123 3.481453 TCTCTACTGTATGCGCTCTGAT 58.519 45.455 9.73 0.00 0.00 2.90
2371 3124 3.500299 TCTCTACTGTATGCGCTCTGATC 59.500 47.826 9.73 0.00 0.00 2.92
2372 3125 2.554462 TCTACTGTATGCGCTCTGATCC 59.446 50.000 9.73 0.00 0.00 3.36
2373 3126 0.390860 ACTGTATGCGCTCTGATCCC 59.609 55.000 9.73 0.00 0.00 3.85
2374 3127 0.390492 CTGTATGCGCTCTGATCCCA 59.610 55.000 9.73 0.00 0.00 4.37
2375 3128 1.001746 CTGTATGCGCTCTGATCCCAT 59.998 52.381 9.73 0.00 0.00 4.00
2376 3129 1.417517 TGTATGCGCTCTGATCCCATT 59.582 47.619 9.73 0.00 0.00 3.16
2377 3130 1.802960 GTATGCGCTCTGATCCCATTG 59.197 52.381 9.73 0.00 0.00 2.82
2378 3131 0.182061 ATGCGCTCTGATCCCATTGT 59.818 50.000 9.73 0.00 0.00 2.71
2379 3132 0.035152 TGCGCTCTGATCCCATTGTT 60.035 50.000 9.73 0.00 0.00 2.83
2380 3133 1.098050 GCGCTCTGATCCCATTGTTT 58.902 50.000 0.00 0.00 0.00 2.83
2381 3134 1.474077 GCGCTCTGATCCCATTGTTTT 59.526 47.619 0.00 0.00 0.00 2.43
2382 3135 2.682856 GCGCTCTGATCCCATTGTTTTA 59.317 45.455 0.00 0.00 0.00 1.52
2383 3136 3.316308 GCGCTCTGATCCCATTGTTTTAT 59.684 43.478 0.00 0.00 0.00 1.40
2384 3137 4.515191 GCGCTCTGATCCCATTGTTTTATA 59.485 41.667 0.00 0.00 0.00 0.98
2385 3138 5.560953 GCGCTCTGATCCCATTGTTTTATAC 60.561 44.000 0.00 0.00 0.00 1.47
2386 3139 5.760253 CGCTCTGATCCCATTGTTTTATACT 59.240 40.000 0.00 0.00 0.00 2.12
2387 3140 6.929049 CGCTCTGATCCCATTGTTTTATACTA 59.071 38.462 0.00 0.00 0.00 1.82
2388 3141 7.095607 CGCTCTGATCCCATTGTTTTATACTAC 60.096 40.741 0.00 0.00 0.00 2.73
2389 3142 7.934120 GCTCTGATCCCATTGTTTTATACTACT 59.066 37.037 0.00 0.00 0.00 2.57
2390 3143 9.482627 CTCTGATCCCATTGTTTTATACTACTC 57.517 37.037 0.00 0.00 0.00 2.59
2391 3144 8.429641 TCTGATCCCATTGTTTTATACTACTCC 58.570 37.037 0.00 0.00 0.00 3.85
2392 3145 8.331931 TGATCCCATTGTTTTATACTACTCCT 57.668 34.615 0.00 0.00 0.00 3.69
2393 3146 8.429641 TGATCCCATTGTTTTATACTACTCCTC 58.570 37.037 0.00 0.00 0.00 3.71
2394 3147 7.989947 TCCCATTGTTTTATACTACTCCTCT 57.010 36.000 0.00 0.00 0.00 3.69
2395 3148 7.792032 TCCCATTGTTTTATACTACTCCTCTG 58.208 38.462 0.00 0.00 0.00 3.35
2396 3149 7.402071 TCCCATTGTTTTATACTACTCCTCTGT 59.598 37.037 0.00 0.00 0.00 3.41
2397 3150 8.047310 CCCATTGTTTTATACTACTCCTCTGTT 58.953 37.037 0.00 0.00 0.00 3.16
2398 3151 9.449719 CCATTGTTTTATACTACTCCTCTGTTT 57.550 33.333 0.00 0.00 0.00 2.83
2410 3163 8.867097 ACTACTCCTCTGTTTACAAATACAAGA 58.133 33.333 0.00 0.00 0.00 3.02
2411 3164 9.877178 CTACTCCTCTGTTTACAAATACAAGAT 57.123 33.333 0.00 0.00 0.00 2.40
2412 3165 8.553459 ACTCCTCTGTTTACAAATACAAGATG 57.447 34.615 0.00 0.00 0.00 2.90
2413 3166 7.119846 ACTCCTCTGTTTACAAATACAAGATGC 59.880 37.037 0.00 0.00 0.00 3.91
2414 3167 7.168219 TCCTCTGTTTACAAATACAAGATGCT 58.832 34.615 0.00 0.00 0.00 3.79
2415 3168 7.334421 TCCTCTGTTTACAAATACAAGATGCTC 59.666 37.037 0.00 0.00 0.00 4.26
2416 3169 7.335422 CCTCTGTTTACAAATACAAGATGCTCT 59.665 37.037 0.00 0.00 0.00 4.09
2417 3170 9.371136 CTCTGTTTACAAATACAAGATGCTCTA 57.629 33.333 0.00 0.00 0.00 2.43
2418 3171 9.890629 TCTGTTTACAAATACAAGATGCTCTAT 57.109 29.630 0.00 0.00 0.00 1.98
2449 3202 9.772973 TTCTGATTAAAATGTATATAGGCGTGT 57.227 29.630 0.00 0.00 0.00 4.49
2450 3203 9.772973 TCTGATTAAAATGTATATAGGCGTGTT 57.227 29.630 0.00 0.00 0.00 3.32
2457 3210 8.726870 AAATGTATATAGGCGTGTTTTAGTGT 57.273 30.769 0.00 0.00 0.00 3.55
2458 3211 7.709269 ATGTATATAGGCGTGTTTTAGTGTG 57.291 36.000 0.00 0.00 0.00 3.82
2459 3212 6.632909 TGTATATAGGCGTGTTTTAGTGTGT 58.367 36.000 0.00 0.00 0.00 3.72
2460 3213 7.098477 TGTATATAGGCGTGTTTTAGTGTGTT 58.902 34.615 0.00 0.00 0.00 3.32
2461 3214 7.603404 TGTATATAGGCGTGTTTTAGTGTGTTT 59.397 33.333 0.00 0.00 0.00 2.83
2462 3215 3.414549 AGGCGTGTTTTAGTGTGTTTG 57.585 42.857 0.00 0.00 0.00 2.93
2463 3216 2.750712 AGGCGTGTTTTAGTGTGTTTGT 59.249 40.909 0.00 0.00 0.00 2.83
2464 3217 3.191791 AGGCGTGTTTTAGTGTGTTTGTT 59.808 39.130 0.00 0.00 0.00 2.83
2465 3218 3.544682 GGCGTGTTTTAGTGTGTTTGTTC 59.455 43.478 0.00 0.00 0.00 3.18
2466 3219 4.159857 GCGTGTTTTAGTGTGTTTGTTCA 58.840 39.130 0.00 0.00 0.00 3.18
2467 3220 4.029750 GCGTGTTTTAGTGTGTTTGTTCAC 59.970 41.667 0.00 0.00 38.63 3.18
2468 3221 5.387279 CGTGTTTTAGTGTGTTTGTTCACT 58.613 37.500 0.00 0.00 45.21 3.41
2469 3222 6.535811 CGTGTTTTAGTGTGTTTGTTCACTA 58.464 36.000 0.00 0.00 43.39 2.74
2477 3230 7.391148 AGTGTGTTTGTTCACTAATTTCAGT 57.609 32.000 0.00 0.00 42.13 3.41
2478 3231 7.472543 AGTGTGTTTGTTCACTAATTTCAGTC 58.527 34.615 0.00 0.00 42.13 3.51
2479 3232 6.691388 GTGTGTTTGTTCACTAATTTCAGTCC 59.309 38.462 0.00 0.00 38.90 3.85
2480 3233 6.375736 TGTGTTTGTTCACTAATTTCAGTCCA 59.624 34.615 0.00 0.00 38.90 4.02
2481 3234 7.094162 TGTGTTTGTTCACTAATTTCAGTCCAA 60.094 33.333 0.00 0.00 38.90 3.53
2482 3235 7.920682 GTGTTTGTTCACTAATTTCAGTCCAAT 59.079 33.333 0.00 0.00 35.68 3.16
2483 3236 8.474025 TGTTTGTTCACTAATTTCAGTCCAATT 58.526 29.630 0.00 0.00 0.00 2.32
2484 3237 9.959749 GTTTGTTCACTAATTTCAGTCCAATTA 57.040 29.630 0.00 0.00 0.00 1.40
2524 3277 9.454859 TTGTAAAAATTTGGATTTGGTCAAACT 57.545 25.926 0.00 0.00 35.69 2.66
2525 3278 9.454859 TGTAAAAATTTGGATTTGGTCAAACTT 57.545 25.926 0.00 0.00 35.69 2.66
2528 3281 7.936496 AAATTTGGATTTGGTCAAACTTTGT 57.064 28.000 1.44 0.00 35.97 2.83
2529 3282 9.454859 AAAATTTGGATTTGGTCAAACTTTGTA 57.545 25.926 1.44 0.00 33.15 2.41
2530 3283 9.454859 AAATTTGGATTTGGTCAAACTTTGTAA 57.545 25.926 1.44 0.00 35.97 2.41
2531 3284 9.454859 AATTTGGATTTGGTCAAACTTTGTAAA 57.545 25.926 1.44 3.52 35.97 2.01
2532 3285 8.485976 TTTGGATTTGGTCAAACTTTGTAAAG 57.514 30.769 2.94 2.94 41.73 1.85
2558 3311 9.983804 GTATTACTTAGGTCAAAACTAACATGC 57.016 33.333 0.00 0.00 0.00 4.06
2559 3312 8.863872 ATTACTTAGGTCAAAACTAACATGCT 57.136 30.769 0.00 0.00 0.00 3.79
2560 3313 6.560253 ACTTAGGTCAAAACTAACATGCTG 57.440 37.500 0.00 0.00 0.00 4.41
2561 3314 6.296026 ACTTAGGTCAAAACTAACATGCTGA 58.704 36.000 0.00 0.00 0.00 4.26
2562 3315 6.428159 ACTTAGGTCAAAACTAACATGCTGAG 59.572 38.462 0.00 0.00 0.00 3.35
2563 3316 4.718961 AGGTCAAAACTAACATGCTGAGT 58.281 39.130 0.00 0.00 0.00 3.41
2564 3317 5.865085 AGGTCAAAACTAACATGCTGAGTA 58.135 37.500 0.00 0.00 0.00 2.59
2565 3318 6.296026 AGGTCAAAACTAACATGCTGAGTAA 58.704 36.000 0.00 0.00 0.00 2.24
2566 3319 6.770785 AGGTCAAAACTAACATGCTGAGTAAA 59.229 34.615 0.00 0.00 0.00 2.01
2567 3320 7.448469 AGGTCAAAACTAACATGCTGAGTAAAT 59.552 33.333 0.00 0.00 0.00 1.40
2568 3321 8.726988 GGTCAAAACTAACATGCTGAGTAAATA 58.273 33.333 0.00 0.00 0.00 1.40
2574 3327 9.607285 AACTAACATGCTGAGTAAATAAAAACG 57.393 29.630 0.00 0.00 0.00 3.60
2575 3328 8.995220 ACTAACATGCTGAGTAAATAAAAACGA 58.005 29.630 0.00 0.00 0.00 3.85
2576 3329 9.820229 CTAACATGCTGAGTAAATAAAAACGAA 57.180 29.630 0.00 0.00 0.00 3.85
2577 3330 8.728088 AACATGCTGAGTAAATAAAAACGAAG 57.272 30.769 0.00 0.00 0.00 3.79
2578 3331 8.094798 ACATGCTGAGTAAATAAAAACGAAGA 57.905 30.769 0.00 0.00 0.00 2.87
2579 3332 8.730680 ACATGCTGAGTAAATAAAAACGAAGAT 58.269 29.630 0.00 0.00 0.00 2.40
2582 3335 8.388103 TGCTGAGTAAATAAAAACGAAGATAGC 58.612 33.333 0.00 0.00 0.00 2.97
2583 3336 8.388103 GCTGAGTAAATAAAAACGAAGATAGCA 58.612 33.333 0.00 0.00 0.00 3.49
2584 3337 9.690434 CTGAGTAAATAAAAACGAAGATAGCAC 57.310 33.333 0.00 0.00 0.00 4.40
2585 3338 9.431887 TGAGTAAATAAAAACGAAGATAGCACT 57.568 29.630 0.00 0.00 0.00 4.40
2590 3343 5.613358 AAAAACGAAGATAGCACTTGAGG 57.387 39.130 0.00 0.00 0.00 3.86
2591 3344 2.969628 ACGAAGATAGCACTTGAGGG 57.030 50.000 0.00 0.00 0.00 4.30
2592 3345 2.180276 ACGAAGATAGCACTTGAGGGT 58.820 47.619 0.00 0.00 0.00 4.34
2593 3346 2.567615 ACGAAGATAGCACTTGAGGGTT 59.432 45.455 0.00 0.00 0.00 4.11
2594 3347 3.767673 ACGAAGATAGCACTTGAGGGTTA 59.232 43.478 0.00 0.00 0.00 2.85
2595 3348 4.113354 CGAAGATAGCACTTGAGGGTTAC 58.887 47.826 0.00 0.00 0.00 2.50
2596 3349 4.142138 CGAAGATAGCACTTGAGGGTTACT 60.142 45.833 0.00 0.00 0.00 2.24
2597 3350 4.744795 AGATAGCACTTGAGGGTTACTG 57.255 45.455 0.00 0.00 0.00 2.74
2598 3351 4.097418 AGATAGCACTTGAGGGTTACTGT 58.903 43.478 0.00 0.00 0.00 3.55
2599 3352 2.841442 AGCACTTGAGGGTTACTGTC 57.159 50.000 0.00 0.00 0.00 3.51
2600 3353 2.330216 AGCACTTGAGGGTTACTGTCT 58.670 47.619 0.00 0.00 0.00 3.41
2601 3354 3.507411 AGCACTTGAGGGTTACTGTCTA 58.493 45.455 0.00 0.00 0.00 2.59
2602 3355 3.511934 AGCACTTGAGGGTTACTGTCTAG 59.488 47.826 0.00 0.00 0.00 2.43
2603 3356 3.368531 GCACTTGAGGGTTACTGTCTAGG 60.369 52.174 0.00 0.00 0.00 3.02
2604 3357 3.195825 CACTTGAGGGTTACTGTCTAGGG 59.804 52.174 0.00 0.00 0.00 3.53
2605 3358 2.544844 TGAGGGTTACTGTCTAGGGG 57.455 55.000 0.00 0.00 0.00 4.79
2606 3359 1.121378 GAGGGTTACTGTCTAGGGGC 58.879 60.000 0.00 0.00 0.00 5.80
2607 3360 0.416231 AGGGTTACTGTCTAGGGGCA 59.584 55.000 0.00 0.00 0.00 5.36
2608 3361 0.540454 GGGTTACTGTCTAGGGGCAC 59.460 60.000 0.00 0.00 0.00 5.01
2609 3362 1.569653 GGTTACTGTCTAGGGGCACT 58.430 55.000 0.00 0.00 0.00 4.40
2610 3363 1.481363 GGTTACTGTCTAGGGGCACTC 59.519 57.143 0.00 0.00 0.00 3.51
2611 3364 2.176889 GTTACTGTCTAGGGGCACTCA 58.823 52.381 0.00 0.00 0.00 3.41
2612 3365 2.565834 GTTACTGTCTAGGGGCACTCAA 59.434 50.000 0.00 0.00 0.00 3.02
2613 3366 1.729586 ACTGTCTAGGGGCACTCAAA 58.270 50.000 0.00 0.00 0.00 2.69
2614 3367 1.348036 ACTGTCTAGGGGCACTCAAAC 59.652 52.381 0.00 0.00 0.00 2.93
2615 3368 1.347707 CTGTCTAGGGGCACTCAAACA 59.652 52.381 0.00 0.00 0.00 2.83
2616 3369 1.985159 TGTCTAGGGGCACTCAAACAT 59.015 47.619 0.00 0.00 0.00 2.71
2617 3370 2.290260 TGTCTAGGGGCACTCAAACATG 60.290 50.000 0.00 0.00 0.00 3.21
2618 3371 1.985159 TCTAGGGGCACTCAAACATGT 59.015 47.619 0.00 0.00 0.00 3.21
2619 3372 3.055385 GTCTAGGGGCACTCAAACATGTA 60.055 47.826 0.00 0.00 0.00 2.29
2620 3373 3.780294 TCTAGGGGCACTCAAACATGTAT 59.220 43.478 0.00 0.00 0.00 2.29
2621 3374 3.456380 AGGGGCACTCAAACATGTATT 57.544 42.857 0.00 0.00 0.00 1.89
2622 3375 4.584638 AGGGGCACTCAAACATGTATTA 57.415 40.909 0.00 0.00 0.00 0.98
2623 3376 4.929479 AGGGGCACTCAAACATGTATTAA 58.071 39.130 0.00 0.00 0.00 1.40
2624 3377 5.329399 AGGGGCACTCAAACATGTATTAAA 58.671 37.500 0.00 0.00 0.00 1.52
2625 3378 5.957774 AGGGGCACTCAAACATGTATTAAAT 59.042 36.000 0.00 0.00 0.00 1.40
2626 3379 6.042143 GGGGCACTCAAACATGTATTAAATG 58.958 40.000 0.00 0.00 0.00 2.32
2627 3380 6.350949 GGGGCACTCAAACATGTATTAAATGT 60.351 38.462 0.00 0.00 39.95 2.71
2763 3516 9.995003 AAAACATGAAAGCTTTTATATTCCACA 57.005 25.926 15.36 5.17 0.00 4.17
3193 3946 7.433708 ACACGTGACTGAAATTATTCATGAA 57.566 32.000 25.01 11.26 44.29 2.57
3194 3947 8.044060 ACACGTGACTGAAATTATTCATGAAT 57.956 30.769 25.01 23.75 44.29 2.57
3195 3948 9.161629 ACACGTGACTGAAATTATTCATGAATA 57.838 29.630 25.01 21.67 44.29 1.75
3196 3949 9.642312 CACGTGACTGAAATTATTCATGAATAG 57.358 33.333 23.61 16.98 44.29 1.73
3197 3950 9.383519 ACGTGACTGAAATTATTCATGAATAGT 57.616 29.630 23.61 19.68 44.29 2.12
3212 3965 9.567776 TTCATGAATAGTTTTTAACTCAGGTGA 57.432 29.630 3.38 0.00 41.77 4.02
3213 3966 9.567776 TCATGAATAGTTTTTAACTCAGGTGAA 57.432 29.630 0.00 0.00 41.77 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 6.551385 AAATCACACAAGCAACAAAACAAA 57.449 29.167 0.00 0.00 0.00 2.83
59 60 3.373439 GCCAAAAATCACACAAGCAACAA 59.627 39.130 0.00 0.00 0.00 2.83
62 70 3.540314 AGCCAAAAATCACACAAGCAA 57.460 38.095 0.00 0.00 0.00 3.91
79 87 8.443160 GTTTTTAAGGAATAGCAAATTCAAGCC 58.557 33.333 12.28 0.00 0.00 4.35
115 128 8.636213 CCCATCTGAATATTGCATTAAGAAAGT 58.364 33.333 0.00 0.00 0.00 2.66
116 129 8.086522 CCCCATCTGAATATTGCATTAAGAAAG 58.913 37.037 0.00 0.00 0.00 2.62
120 133 7.373493 GTTCCCCATCTGAATATTGCATTAAG 58.627 38.462 0.00 0.00 0.00 1.85
121 134 6.267471 GGTTCCCCATCTGAATATTGCATTAA 59.733 38.462 0.00 0.00 0.00 1.40
122 135 5.774690 GGTTCCCCATCTGAATATTGCATTA 59.225 40.000 0.00 0.00 0.00 1.90
127 140 5.302823 GGAAAGGTTCCCCATCTGAATATTG 59.697 44.000 0.00 0.00 44.30 1.90
186 199 7.118723 TCTATGCCATTCAGGTTTTACAATCT 58.881 34.615 0.00 0.00 40.61 2.40
195 208 5.388654 CCCTTTATCTATGCCATTCAGGTT 58.611 41.667 0.00 0.00 40.61 3.50
196 209 4.202609 CCCCTTTATCTATGCCATTCAGGT 60.203 45.833 0.00 0.00 40.61 4.00
206 219 6.708054 GTCTCATTCACACCCCTTTATCTATG 59.292 42.308 0.00 0.00 0.00 2.23
220 233 3.429410 CGCTATGACCTGTCTCATTCACA 60.429 47.826 0.00 0.00 32.86 3.58
225 238 1.043816 CCCGCTATGACCTGTCTCAT 58.956 55.000 0.00 0.00 35.05 2.90
230 243 2.154567 TACTTCCCGCTATGACCTGT 57.845 50.000 0.00 0.00 0.00 4.00
235 248 6.665992 AGTTTATGATACTTCCCGCTATGA 57.334 37.500 0.00 0.00 0.00 2.15
241 254 9.420551 GGAATAACTAGTTTATGATACTTCCCG 57.579 37.037 14.49 0.00 30.21 5.14
278 291 7.060174 ACACGAAAACGAAATTGCATTGTATAC 59.940 33.333 0.00 0.00 0.00 1.47
286 299 5.800941 AGTTTAACACGAAAACGAAATTGCA 59.199 32.000 0.00 0.00 40.86 4.08
291 304 8.450385 AATCAAAGTTTAACACGAAAACGAAA 57.550 26.923 0.00 0.00 40.86 3.46
320 333 9.767228 GTAACCCTTGTTTTGTTAACCATAATT 57.233 29.630 2.48 0.00 35.87 1.40
321 334 8.925338 TGTAACCCTTGTTTTGTTAACCATAAT 58.075 29.630 2.48 0.00 35.87 1.28
322 335 8.302515 TGTAACCCTTGTTTTGTTAACCATAA 57.697 30.769 2.48 0.00 35.87 1.90
323 336 7.893124 TGTAACCCTTGTTTTGTTAACCATA 57.107 32.000 2.48 0.00 35.87 2.74
324 337 6.793505 TGTAACCCTTGTTTTGTTAACCAT 57.206 33.333 2.48 0.00 35.87 3.55
325 338 6.154706 ACATGTAACCCTTGTTTTGTTAACCA 59.845 34.615 0.00 0.00 35.87 3.67
326 339 6.575267 ACATGTAACCCTTGTTTTGTTAACC 58.425 36.000 0.00 0.00 35.87 2.85
327 340 7.221259 GTGACATGTAACCCTTGTTTTGTTAAC 59.779 37.037 1.31 0.00 35.87 2.01
328 341 7.093902 TGTGACATGTAACCCTTGTTTTGTTAA 60.094 33.333 11.00 0.00 35.87 2.01
329 342 6.377429 TGTGACATGTAACCCTTGTTTTGTTA 59.623 34.615 11.00 0.00 35.87 2.41
330 343 5.186021 TGTGACATGTAACCCTTGTTTTGTT 59.814 36.000 11.00 0.00 35.87 2.83
331 344 4.707448 TGTGACATGTAACCCTTGTTTTGT 59.293 37.500 11.00 0.00 35.87 2.83
346 359 8.755941 CGGTAATAGTCTATCTTTTGTGACATG 58.244 37.037 0.00 0.00 32.41 3.21
347 360 8.692710 TCGGTAATAGTCTATCTTTTGTGACAT 58.307 33.333 0.00 0.00 32.41 3.06
380 393 7.837202 ATGTCATTGGATGCACATTTTAAAG 57.163 32.000 0.00 0.00 31.59 1.85
384 397 6.406177 GGAGTATGTCATTGGATGCACATTTT 60.406 38.462 0.00 0.00 34.86 1.82
396 409 4.060900 CGAATGGAGGGAGTATGTCATTG 58.939 47.826 0.00 0.00 0.00 2.82
401 414 5.373812 AATTTCGAATGGAGGGAGTATGT 57.626 39.130 0.00 0.00 0.00 2.29
402 415 6.525629 AGTAATTTCGAATGGAGGGAGTATG 58.474 40.000 0.00 0.00 0.00 2.39
404 417 6.346096 CAAGTAATTTCGAATGGAGGGAGTA 58.654 40.000 0.00 0.00 0.00 2.59
406 419 4.035675 GCAAGTAATTTCGAATGGAGGGAG 59.964 45.833 0.00 0.00 0.00 4.30
409 422 3.694072 TGGCAAGTAATTTCGAATGGAGG 59.306 43.478 0.00 0.00 0.00 4.30
410 423 4.155826 TGTGGCAAGTAATTTCGAATGGAG 59.844 41.667 0.00 0.00 0.00 3.86
411 424 4.075682 TGTGGCAAGTAATTTCGAATGGA 58.924 39.130 0.00 0.00 0.00 3.41
412 425 4.433186 TGTGGCAAGTAATTTCGAATGG 57.567 40.909 0.00 0.00 0.00 3.16
414 427 7.095271 CCATTTTTGTGGCAAGTAATTTCGAAT 60.095 33.333 0.00 0.00 31.43 3.34
415 428 6.201806 CCATTTTTGTGGCAAGTAATTTCGAA 59.798 34.615 0.00 0.00 31.43 3.71
417 430 5.694006 TCCATTTTTGTGGCAAGTAATTTCG 59.306 36.000 0.00 0.00 39.19 3.46
419 432 9.566432 TTTATCCATTTTTGTGGCAAGTAATTT 57.434 25.926 0.00 0.00 39.19 1.82
421 434 8.592809 TCTTTATCCATTTTTGTGGCAAGTAAT 58.407 29.630 0.00 0.00 39.19 1.89
422 435 7.957002 TCTTTATCCATTTTTGTGGCAAGTAA 58.043 30.769 0.00 0.00 39.19 2.24
423 436 7.531857 TCTTTATCCATTTTTGTGGCAAGTA 57.468 32.000 0.00 0.00 39.19 2.24
424 437 6.418057 TCTTTATCCATTTTTGTGGCAAGT 57.582 33.333 0.00 0.00 39.19 3.16
425 438 7.098477 TCATCTTTATCCATTTTTGTGGCAAG 58.902 34.615 0.00 0.00 39.19 4.01
427 440 6.602410 TCATCTTTATCCATTTTTGTGGCA 57.398 33.333 0.00 0.00 39.19 4.92
428 441 7.550196 ACATTCATCTTTATCCATTTTTGTGGC 59.450 33.333 0.00 0.00 39.19 5.01
483 496 6.647481 TCGGAATTACTCGTTCAAGAAATGAA 59.353 34.615 0.00 0.00 45.71 2.57
484 497 6.160684 TCGGAATTACTCGTTCAAGAAATGA 58.839 36.000 0.00 0.00 35.85 2.57
485 498 6.403333 TCGGAATTACTCGTTCAAGAAATG 57.597 37.500 0.00 0.00 0.00 2.32
486 499 6.400727 CGTTCGGAATTACTCGTTCAAGAAAT 60.401 38.462 0.00 0.00 30.99 2.17
487 500 5.107760 CGTTCGGAATTACTCGTTCAAGAAA 60.108 40.000 0.00 0.00 30.99 2.52
488 501 4.383649 CGTTCGGAATTACTCGTTCAAGAA 59.616 41.667 0.00 0.00 0.00 2.52
490 503 3.060363 CCGTTCGGAATTACTCGTTCAAG 59.940 47.826 5.19 0.00 0.00 3.02
491 504 2.988493 CCGTTCGGAATTACTCGTTCAA 59.012 45.455 5.19 0.00 0.00 2.69
492 505 2.228582 TCCGTTCGGAATTACTCGTTCA 59.771 45.455 11.66 0.00 0.00 3.18
494 507 2.416431 CCTCCGTTCGGAATTACTCGTT 60.416 50.000 14.79 0.00 33.41 3.85
495 508 1.133790 CCTCCGTTCGGAATTACTCGT 59.866 52.381 14.79 0.00 33.41 4.18
496 509 1.535437 CCCTCCGTTCGGAATTACTCG 60.535 57.143 14.79 1.97 33.41 4.18
497 510 1.753073 TCCCTCCGTTCGGAATTACTC 59.247 52.381 14.79 0.00 33.41 2.59
499 512 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
500 513 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
501 514 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
502 515 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
503 516 0.038744 AGTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
504 517 0.038744 AAGTACTCCCTCCGTTCGGA 59.961 55.000 13.34 13.34 0.00 4.55
505 518 0.893447 AAAGTACTCCCTCCGTTCGG 59.107 55.000 4.74 4.74 0.00 4.30
506 519 2.738013 AAAAGTACTCCCTCCGTTCG 57.262 50.000 0.00 0.00 0.00 3.95
507 520 6.091849 GTCATTAAAAAGTACTCCCTCCGTTC 59.908 42.308 0.00 0.00 0.00 3.95
510 523 5.484715 TGTCATTAAAAAGTACTCCCTCCG 58.515 41.667 0.00 0.00 0.00 4.63
599 1188 8.774183 TGAGGGGTGTGTATTAGTACAAAATAT 58.226 33.333 0.00 0.00 42.18 1.28
602 1191 6.232692 GTGAGGGGTGTGTATTAGTACAAAA 58.767 40.000 0.00 0.00 42.18 2.44
615 1204 2.941025 ATGGGGGTGAGGGGTGTG 60.941 66.667 0.00 0.00 0.00 3.82
711 1300 9.057089 GGAATTACTCGTCCAAGAAATGAATAT 57.943 33.333 0.00 0.00 33.79 1.28
713 1302 6.037172 CGGAATTACTCGTCCAAGAAATGAAT 59.963 38.462 0.00 0.00 33.10 2.57
715 1304 4.868171 CGGAATTACTCGTCCAAGAAATGA 59.132 41.667 0.00 0.00 33.10 2.57
716 1305 4.868171 TCGGAATTACTCGTCCAAGAAATG 59.132 41.667 0.00 0.00 33.10 2.32
717 1306 5.080969 TCGGAATTACTCGTCCAAGAAAT 57.919 39.130 0.00 0.00 33.10 2.17
719 1308 4.240096 GTTCGGAATTACTCGTCCAAGAA 58.760 43.478 0.00 0.00 33.10 2.52
722 1311 2.228582 TCGTTCGGAATTACTCGTCCAA 59.771 45.455 0.00 0.00 33.10 3.53
723 1312 1.811965 TCGTTCGGAATTACTCGTCCA 59.188 47.619 0.00 0.00 33.10 4.02
725 1314 2.850647 CCTTCGTTCGGAATTACTCGTC 59.149 50.000 0.00 0.00 33.26 4.20
726 1315 2.416431 CCCTTCGTTCGGAATTACTCGT 60.416 50.000 0.00 0.00 33.26 4.18
727 1316 2.159338 TCCCTTCGTTCGGAATTACTCG 60.159 50.000 0.00 0.00 33.26 4.18
728 1317 3.119209 ACTCCCTTCGTTCGGAATTACTC 60.119 47.826 0.00 0.00 33.26 2.59
729 1318 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
731 1320 4.272489 TCTACTCCCTTCGTTCGGAATTA 58.728 43.478 0.00 0.00 33.26 1.40
734 1323 2.205022 TCTACTCCCTTCGTTCGGAA 57.795 50.000 0.00 0.00 0.00 4.30
736 1325 1.749634 ACATCTACTCCCTTCGTTCGG 59.250 52.381 0.00 0.00 0.00 4.30
737 1326 2.422479 TGACATCTACTCCCTTCGTTCG 59.578 50.000 0.00 0.00 0.00 3.95
739 1328 2.163815 CGTGACATCTACTCCCTTCGTT 59.836 50.000 0.00 0.00 0.00 3.85
740 1329 1.743958 CGTGACATCTACTCCCTTCGT 59.256 52.381 0.00 0.00 0.00 3.85
742 1331 1.476891 TGCGTGACATCTACTCCCTTC 59.523 52.381 0.00 0.00 0.00 3.46
744 1333 1.410517 CATGCGTGACATCTACTCCCT 59.589 52.381 0.00 0.00 36.64 4.20
745 1334 1.858091 CATGCGTGACATCTACTCCC 58.142 55.000 0.00 0.00 36.64 4.30
746 1335 1.202463 AGCATGCGTGACATCTACTCC 60.202 52.381 13.01 0.00 36.64 3.85
747 1336 1.857217 CAGCATGCGTGACATCTACTC 59.143 52.381 13.01 0.00 36.64 2.59
748 1337 1.931906 CAGCATGCGTGACATCTACT 58.068 50.000 13.01 0.00 36.64 2.57
765 1500 0.109597 GAAAATGACCGCAGTGGCAG 60.110 55.000 0.00 0.00 43.94 4.85
775 1510 1.732259 ACATCGACGCTGAAAATGACC 59.268 47.619 5.58 0.00 0.00 4.02
781 1516 1.792367 CTGTTGACATCGACGCTGAAA 59.208 47.619 5.58 0.00 32.90 2.69
805 1540 7.980099 CCAGTTAGTAGACCTACAAATTACCAG 59.020 40.741 9.56 0.00 38.48 4.00
818 1553 2.991866 GTTTGACGCCAGTTAGTAGACC 59.008 50.000 0.00 0.00 0.00 3.85
827 1562 2.031157 GCACAAATAGTTTGACGCCAGT 60.031 45.455 9.21 0.00 43.26 4.00
857 1592 8.267620 TGGACATTCTTGAGGATAGATAATGT 57.732 34.615 0.00 0.00 29.93 2.71
892 1629 8.408043 AGAGGATGAATATAGATGGATCGATC 57.592 38.462 17.36 17.36 0.00 3.69
900 1637 7.151308 GGCGGAATAGAGGATGAATATAGATG 58.849 42.308 0.00 0.00 0.00 2.90
940 1677 7.492669 TCGTGTACGTAGAAGCTAATTACTACT 59.507 37.037 0.00 0.00 40.80 2.57
943 1680 6.668541 TCGTGTACGTAGAAGCTAATTACT 57.331 37.500 0.00 0.00 40.80 2.24
988 1732 1.385567 CGCGCCATTTTTCGACGTTC 61.386 55.000 0.00 0.00 0.00 3.95
994 1738 1.122323 CAAAGTTCGCGCCATTTTTCG 59.878 47.619 0.00 0.00 0.00 3.46
1016 1760 1.073216 CAGTAGCACGAGCAGGAACG 61.073 60.000 7.77 0.00 45.49 3.95
1044 1788 0.391228 TACTTGTGACGAGGCTTGCA 59.609 50.000 4.63 0.00 0.00 4.08
1113 1863 1.736365 GCTCCTCCGTAGTGTAGCCC 61.736 65.000 0.00 0.00 0.00 5.19
1285 2035 3.515286 GTCGATGAGGGCGTCCGA 61.515 66.667 0.00 4.68 38.33 4.55
1513 2263 4.286320 GCCGAGCGACCCGATGAT 62.286 66.667 0.00 0.00 0.00 2.45
1533 2283 1.078848 CTGGAAGGTGAAGGCCTCG 60.079 63.158 5.23 0.00 38.03 4.63
1600 2350 4.699522 GTTCAGGGCGCCCTTCGT 62.700 66.667 45.58 23.70 45.70 3.85
1698 2448 0.619255 TGCGGAAATAGGGGGTGAGA 60.619 55.000 0.00 0.00 0.00 3.27
1774 2527 4.840288 TATGGACGTCACGGCGCG 62.840 66.667 18.91 0.00 34.63 6.86
1849 2602 4.489771 CCCCACGCTGATCCCCAC 62.490 72.222 0.00 0.00 0.00 4.61
1850 2603 4.731853 TCCCCACGCTGATCCCCA 62.732 66.667 0.00 0.00 0.00 4.96
1895 2648 4.069232 CCCGCCTGAGCTCGAACA 62.069 66.667 9.64 0.00 36.60 3.18
1913 2666 1.078426 GACCAATACCCAGCAGCGT 60.078 57.895 0.00 0.00 0.00 5.07
1999 2752 3.382832 CCGGGTCACTTCCTCGCT 61.383 66.667 0.00 0.00 0.00 4.93
2007 2760 1.227853 GTTCAGTTGCCGGGTCACT 60.228 57.895 2.18 0.00 0.00 3.41
2019 2772 0.108138 GCACGAGGCTATGGTTCAGT 60.108 55.000 0.00 0.00 40.25 3.41
2027 2780 4.899239 GCGGCTGCACGAGGCTAT 62.899 66.667 14.08 0.00 45.32 2.97
2046 2799 1.606889 GTCCAGTCCGGTGTCTCCT 60.607 63.158 0.00 0.00 35.57 3.69
2048 2801 1.606889 AGGTCCAGTCCGGTGTCTC 60.607 63.158 0.00 0.00 35.57 3.36
2049 2802 1.908793 CAGGTCCAGTCCGGTGTCT 60.909 63.158 0.00 0.00 35.57 3.41
2080 2833 3.426525 GGTACGACCTTGTTAACGTCTTG 59.573 47.826 0.26 0.00 39.59 3.02
2082 2835 3.288809 GGTACGACCTTGTTAACGTCT 57.711 47.619 0.26 0.00 39.59 4.18
2181 2934 3.444717 GATGAGCATGCACGCCGTG 62.445 63.158 21.98 13.95 36.51 4.94
2196 2949 2.022195 TCGTAACCTCCTTCCTCGATG 58.978 52.381 0.00 0.00 0.00 3.84
2318 3071 2.297129 AAGGTGAGGGGCTCAGAGC 61.297 63.158 14.69 14.69 41.46 4.09
2319 3072 1.601171 CAAGGTGAGGGGCTCAGAG 59.399 63.158 0.00 0.00 41.46 3.35
2320 3073 2.596851 GCAAGGTGAGGGGCTCAGA 61.597 63.158 0.00 0.00 41.46 3.27
2321 3074 2.045536 GCAAGGTGAGGGGCTCAG 60.046 66.667 0.00 0.00 41.46 3.35
2322 3075 2.156098 AAGCAAGGTGAGGGGCTCA 61.156 57.895 0.00 0.00 38.25 4.26
2323 3076 1.676967 CAAGCAAGGTGAGGGGCTC 60.677 63.158 0.00 0.00 35.11 4.70
2324 3077 2.437897 CAAGCAAGGTGAGGGGCT 59.562 61.111 0.00 0.00 38.45 5.19
2325 3078 2.116125 ACAAGCAAGGTGAGGGGC 59.884 61.111 0.00 0.00 0.00 5.80
2326 3079 1.151450 ACACAAGCAAGGTGAGGGG 59.849 57.895 9.05 0.00 39.53 4.79
2327 3080 0.466189 ACACACAAGCAAGGTGAGGG 60.466 55.000 9.05 2.15 39.53 4.30
2328 3081 0.947244 GACACACAAGCAAGGTGAGG 59.053 55.000 9.05 4.15 39.53 3.86
2329 3082 0.947244 GGACACACAAGCAAGGTGAG 59.053 55.000 9.05 4.31 39.53 3.51
2330 3083 0.546122 AGGACACACAAGCAAGGTGA 59.454 50.000 9.05 0.00 39.53 4.02
2331 3084 0.947244 GAGGACACACAAGCAAGGTG 59.053 55.000 1.47 1.47 41.95 4.00
2332 3085 0.839946 AGAGGACACACAAGCAAGGT 59.160 50.000 0.00 0.00 0.00 3.50
2333 3086 1.071385 AGAGAGGACACACAAGCAAGG 59.929 52.381 0.00 0.00 0.00 3.61
2334 3087 2.540265 AGAGAGGACACACAAGCAAG 57.460 50.000 0.00 0.00 0.00 4.01
2335 3088 2.965831 AGTAGAGAGGACACACAAGCAA 59.034 45.455 0.00 0.00 0.00 3.91
2336 3089 2.297315 CAGTAGAGAGGACACACAAGCA 59.703 50.000 0.00 0.00 0.00 3.91
2337 3090 2.297597 ACAGTAGAGAGGACACACAAGC 59.702 50.000 0.00 0.00 0.00 4.01
2338 3091 5.645624 CATACAGTAGAGAGGACACACAAG 58.354 45.833 0.00 0.00 0.00 3.16
2339 3092 4.082190 GCATACAGTAGAGAGGACACACAA 60.082 45.833 0.00 0.00 0.00 3.33
2340 3093 3.444034 GCATACAGTAGAGAGGACACACA 59.556 47.826 0.00 0.00 0.00 3.72
2341 3094 3.487711 CGCATACAGTAGAGAGGACACAC 60.488 52.174 0.00 0.00 0.00 3.82
2342 3095 2.683362 CGCATACAGTAGAGAGGACACA 59.317 50.000 0.00 0.00 0.00 3.72
2343 3096 2.541999 GCGCATACAGTAGAGAGGACAC 60.542 54.545 0.30 0.00 0.00 3.67
2344 3097 1.676529 GCGCATACAGTAGAGAGGACA 59.323 52.381 0.30 0.00 0.00 4.02
2345 3098 1.950909 AGCGCATACAGTAGAGAGGAC 59.049 52.381 11.47 0.00 0.00 3.85
2346 3099 2.158740 AGAGCGCATACAGTAGAGAGGA 60.159 50.000 11.47 0.00 0.00 3.71
2347 3100 2.031245 CAGAGCGCATACAGTAGAGAGG 60.031 54.545 11.47 0.00 0.00 3.69
2348 3101 2.875317 TCAGAGCGCATACAGTAGAGAG 59.125 50.000 11.47 0.00 0.00 3.20
2349 3102 2.919228 TCAGAGCGCATACAGTAGAGA 58.081 47.619 11.47 0.00 0.00 3.10
2350 3103 3.365868 GGATCAGAGCGCATACAGTAGAG 60.366 52.174 11.47 0.00 0.00 2.43
2351 3104 2.554462 GGATCAGAGCGCATACAGTAGA 59.446 50.000 11.47 0.00 0.00 2.59
2352 3105 2.352225 GGGATCAGAGCGCATACAGTAG 60.352 54.545 11.47 0.00 0.00 2.57
2353 3106 1.613925 GGGATCAGAGCGCATACAGTA 59.386 52.381 11.47 0.00 0.00 2.74
2354 3107 0.390860 GGGATCAGAGCGCATACAGT 59.609 55.000 11.47 0.00 0.00 3.55
2355 3108 0.390492 TGGGATCAGAGCGCATACAG 59.610 55.000 11.47 0.00 0.00 2.74
2356 3109 1.051008 ATGGGATCAGAGCGCATACA 58.949 50.000 16.08 0.00 37.18 2.29
2357 3110 1.802960 CAATGGGATCAGAGCGCATAC 59.197 52.381 17.72 0.00 37.86 2.39
2358 3111 1.417517 ACAATGGGATCAGAGCGCATA 59.582 47.619 17.72 0.00 37.86 3.14
2359 3112 0.182061 ACAATGGGATCAGAGCGCAT 59.818 50.000 12.23 12.23 40.14 4.73
2360 3113 0.035152 AACAATGGGATCAGAGCGCA 60.035 50.000 11.47 8.00 0.00 6.09
2361 3114 1.098050 AAACAATGGGATCAGAGCGC 58.902 50.000 0.00 0.00 0.00 5.92
2362 3115 5.760253 AGTATAAAACAATGGGATCAGAGCG 59.240 40.000 0.00 0.00 0.00 5.03
2363 3116 7.934120 AGTAGTATAAAACAATGGGATCAGAGC 59.066 37.037 0.00 0.00 0.00 4.09
2364 3117 9.482627 GAGTAGTATAAAACAATGGGATCAGAG 57.517 37.037 0.00 0.00 0.00 3.35
2365 3118 8.429641 GGAGTAGTATAAAACAATGGGATCAGA 58.570 37.037 0.00 0.00 0.00 3.27
2366 3119 8.432805 AGGAGTAGTATAAAACAATGGGATCAG 58.567 37.037 0.00 0.00 0.00 2.90
2367 3120 8.331931 AGGAGTAGTATAAAACAATGGGATCA 57.668 34.615 0.00 0.00 0.00 2.92
2368 3121 8.652290 AGAGGAGTAGTATAAAACAATGGGATC 58.348 37.037 0.00 0.00 0.00 3.36
2369 3122 8.432805 CAGAGGAGTAGTATAAAACAATGGGAT 58.567 37.037 0.00 0.00 0.00 3.85
2370 3123 7.402071 ACAGAGGAGTAGTATAAAACAATGGGA 59.598 37.037 0.00 0.00 0.00 4.37
2371 3124 7.565680 ACAGAGGAGTAGTATAAAACAATGGG 58.434 38.462 0.00 0.00 0.00 4.00
2372 3125 9.449719 AAACAGAGGAGTAGTATAAAACAATGG 57.550 33.333 0.00 0.00 0.00 3.16
2384 3137 8.867097 TCTTGTATTTGTAAACAGAGGAGTAGT 58.133 33.333 0.00 0.00 0.00 2.73
2385 3138 9.877178 ATCTTGTATTTGTAAACAGAGGAGTAG 57.123 33.333 0.00 0.00 0.00 2.57
2386 3139 9.653287 CATCTTGTATTTGTAAACAGAGGAGTA 57.347 33.333 0.00 0.00 0.00 2.59
2387 3140 7.119846 GCATCTTGTATTTGTAAACAGAGGAGT 59.880 37.037 0.00 0.00 0.00 3.85
2388 3141 7.335422 AGCATCTTGTATTTGTAAACAGAGGAG 59.665 37.037 0.00 0.00 0.00 3.69
2389 3142 7.168219 AGCATCTTGTATTTGTAAACAGAGGA 58.832 34.615 0.00 0.00 0.00 3.71
2390 3143 7.383102 AGCATCTTGTATTTGTAAACAGAGG 57.617 36.000 0.00 0.00 0.00 3.69
2423 3176 9.772973 ACACGCCTATATACATTTTAATCAGAA 57.227 29.630 0.00 0.00 0.00 3.02
2424 3177 9.772973 AACACGCCTATATACATTTTAATCAGA 57.227 29.630 0.00 0.00 0.00 3.27
2431 3184 9.169592 ACACTAAAACACGCCTATATACATTTT 57.830 29.630 0.00 0.00 0.00 1.82
2432 3185 8.609176 CACACTAAAACACGCCTATATACATTT 58.391 33.333 0.00 0.00 0.00 2.32
2433 3186 7.767198 ACACACTAAAACACGCCTATATACATT 59.233 33.333 0.00 0.00 0.00 2.71
2434 3187 7.270047 ACACACTAAAACACGCCTATATACAT 58.730 34.615 0.00 0.00 0.00 2.29
2435 3188 6.632909 ACACACTAAAACACGCCTATATACA 58.367 36.000 0.00 0.00 0.00 2.29
2436 3189 7.529880 AACACACTAAAACACGCCTATATAC 57.470 36.000 0.00 0.00 0.00 1.47
2437 3190 7.603404 ACAAACACACTAAAACACGCCTATATA 59.397 33.333 0.00 0.00 0.00 0.86
2438 3191 6.428771 ACAAACACACTAAAACACGCCTATAT 59.571 34.615 0.00 0.00 0.00 0.86
2439 3192 5.759273 ACAAACACACTAAAACACGCCTATA 59.241 36.000 0.00 0.00 0.00 1.31
2440 3193 4.577283 ACAAACACACTAAAACACGCCTAT 59.423 37.500 0.00 0.00 0.00 2.57
2441 3194 3.940221 ACAAACACACTAAAACACGCCTA 59.060 39.130 0.00 0.00 0.00 3.93
2442 3195 2.750712 ACAAACACACTAAAACACGCCT 59.249 40.909 0.00 0.00 0.00 5.52
2443 3196 3.139603 ACAAACACACTAAAACACGCC 57.860 42.857 0.00 0.00 0.00 5.68
2444 3197 4.029750 GTGAACAAACACACTAAAACACGC 59.970 41.667 0.00 0.00 40.11 5.34
2445 3198 5.387279 AGTGAACAAACACACTAAAACACG 58.613 37.500 0.00 0.00 44.06 4.49
2452 3205 8.500753 ACTGAAATTAGTGAACAAACACACTA 57.499 30.769 0.00 0.00 44.06 2.74
2453 3206 7.391148 ACTGAAATTAGTGAACAAACACACT 57.609 32.000 0.00 0.00 46.81 3.55
2454 3207 6.691388 GGACTGAAATTAGTGAACAAACACAC 59.309 38.462 0.00 0.00 42.45 3.82
2455 3208 6.375736 TGGACTGAAATTAGTGAACAAACACA 59.624 34.615 0.00 0.00 42.45 3.72
2456 3209 6.791303 TGGACTGAAATTAGTGAACAAACAC 58.209 36.000 0.00 0.00 40.60 3.32
2457 3210 7.397892 TTGGACTGAAATTAGTGAACAAACA 57.602 32.000 0.00 0.00 0.00 2.83
2458 3211 8.871686 AATTGGACTGAAATTAGTGAACAAAC 57.128 30.769 0.00 0.00 0.00 2.93
2498 3251 9.454859 AGTTTGACCAAATCCAAATTTTTACAA 57.545 25.926 0.00 0.00 35.14 2.41
2499 3252 9.454859 AAGTTTGACCAAATCCAAATTTTTACA 57.545 25.926 0.00 0.00 35.14 2.41
2502 3255 8.801299 ACAAAGTTTGACCAAATCCAAATTTTT 58.199 25.926 22.23 0.00 38.92 1.94
2503 3256 8.347004 ACAAAGTTTGACCAAATCCAAATTTT 57.653 26.923 22.23 0.00 40.41 1.82
2504 3257 7.936496 ACAAAGTTTGACCAAATCCAAATTT 57.064 28.000 22.23 0.00 34.94 1.82
2505 3258 9.454859 TTTACAAAGTTTGACCAAATCCAAATT 57.545 25.926 22.23 0.00 35.14 1.82
2506 3259 9.108284 CTTTACAAAGTTTGACCAAATCCAAAT 57.892 29.630 22.23 0.00 35.14 2.32
2507 3260 8.097662 ACTTTACAAAGTTTGACCAAATCCAAA 58.902 29.630 22.23 6.72 46.52 3.28
2508 3261 7.616313 ACTTTACAAAGTTTGACCAAATCCAA 58.384 30.769 22.23 1.18 46.52 3.53
2509 3262 7.176589 ACTTTACAAAGTTTGACCAAATCCA 57.823 32.000 22.23 0.00 46.52 3.41
2510 3263 9.758651 AATACTTTACAAAGTTTGACCAAATCC 57.241 29.630 22.23 0.00 46.52 3.01
2532 3285 9.983804 GCATGTTAGTTTTGACCTAAGTAATAC 57.016 33.333 0.00 0.00 0.00 1.89
2533 3286 9.953565 AGCATGTTAGTTTTGACCTAAGTAATA 57.046 29.630 0.00 0.00 0.00 0.98
2534 3287 8.730680 CAGCATGTTAGTTTTGACCTAAGTAAT 58.269 33.333 0.00 0.00 0.00 1.89
2535 3288 7.934665 TCAGCATGTTAGTTTTGACCTAAGTAA 59.065 33.333 0.00 0.00 37.40 2.24
2536 3289 7.446769 TCAGCATGTTAGTTTTGACCTAAGTA 58.553 34.615 0.00 0.00 37.40 2.24
2537 3290 6.296026 TCAGCATGTTAGTTTTGACCTAAGT 58.704 36.000 0.00 0.00 37.40 2.24
2538 3291 6.428159 ACTCAGCATGTTAGTTTTGACCTAAG 59.572 38.462 0.00 0.00 37.40 2.18
2539 3292 6.296026 ACTCAGCATGTTAGTTTTGACCTAA 58.704 36.000 0.00 0.00 37.40 2.69
2540 3293 5.865085 ACTCAGCATGTTAGTTTTGACCTA 58.135 37.500 0.00 0.00 37.40 3.08
2541 3294 4.718961 ACTCAGCATGTTAGTTTTGACCT 58.281 39.130 0.00 0.00 37.40 3.85
2542 3295 6.554334 TTACTCAGCATGTTAGTTTTGACC 57.446 37.500 0.00 0.00 37.40 4.02
2548 3301 9.607285 CGTTTTTATTTACTCAGCATGTTAGTT 57.393 29.630 0.00 0.00 37.40 2.24
2549 3302 8.995220 TCGTTTTTATTTACTCAGCATGTTAGT 58.005 29.630 0.00 0.00 37.40 2.24
2550 3303 9.820229 TTCGTTTTTATTTACTCAGCATGTTAG 57.180 29.630 0.00 0.00 37.40 2.34
2551 3304 9.820229 CTTCGTTTTTATTTACTCAGCATGTTA 57.180 29.630 0.00 0.00 37.40 2.41
2552 3305 8.564574 TCTTCGTTTTTATTTACTCAGCATGTT 58.435 29.630 0.00 0.00 37.40 2.71
2553 3306 8.094798 TCTTCGTTTTTATTTACTCAGCATGT 57.905 30.769 0.00 0.00 37.40 3.21
2556 3309 8.388103 GCTATCTTCGTTTTTATTTACTCAGCA 58.612 33.333 0.00 0.00 0.00 4.41
2557 3310 8.388103 TGCTATCTTCGTTTTTATTTACTCAGC 58.612 33.333 0.00 0.00 0.00 4.26
2558 3311 9.690434 GTGCTATCTTCGTTTTTATTTACTCAG 57.310 33.333 0.00 0.00 0.00 3.35
2559 3312 9.431887 AGTGCTATCTTCGTTTTTATTTACTCA 57.568 29.630 0.00 0.00 0.00 3.41
2564 3317 8.237267 CCTCAAGTGCTATCTTCGTTTTTATTT 58.763 33.333 0.00 0.00 0.00 1.40
2565 3318 7.148239 CCCTCAAGTGCTATCTTCGTTTTTATT 60.148 37.037 0.00 0.00 0.00 1.40
2566 3319 6.316390 CCCTCAAGTGCTATCTTCGTTTTTAT 59.684 38.462 0.00 0.00 0.00 1.40
2567 3320 5.642063 CCCTCAAGTGCTATCTTCGTTTTTA 59.358 40.000 0.00 0.00 0.00 1.52
2568 3321 4.455877 CCCTCAAGTGCTATCTTCGTTTTT 59.544 41.667 0.00 0.00 0.00 1.94
2569 3322 4.003648 CCCTCAAGTGCTATCTTCGTTTT 58.996 43.478 0.00 0.00 0.00 2.43
2570 3323 3.008049 ACCCTCAAGTGCTATCTTCGTTT 59.992 43.478 0.00 0.00 0.00 3.60
2571 3324 2.567615 ACCCTCAAGTGCTATCTTCGTT 59.432 45.455 0.00 0.00 0.00 3.85
2572 3325 2.180276 ACCCTCAAGTGCTATCTTCGT 58.820 47.619 0.00 0.00 0.00 3.85
2573 3326 2.969628 ACCCTCAAGTGCTATCTTCG 57.030 50.000 0.00 0.00 0.00 3.79
2574 3327 5.112686 CAGTAACCCTCAAGTGCTATCTTC 58.887 45.833 0.00 0.00 0.00 2.87
2575 3328 4.532521 ACAGTAACCCTCAAGTGCTATCTT 59.467 41.667 0.00 0.00 0.00 2.40
2576 3329 4.097418 ACAGTAACCCTCAAGTGCTATCT 58.903 43.478 0.00 0.00 0.00 1.98
2577 3330 4.160626 AGACAGTAACCCTCAAGTGCTATC 59.839 45.833 0.00 0.00 0.00 2.08
2578 3331 4.097418 AGACAGTAACCCTCAAGTGCTAT 58.903 43.478 0.00 0.00 0.00 2.97
2579 3332 3.507411 AGACAGTAACCCTCAAGTGCTA 58.493 45.455 0.00 0.00 0.00 3.49
2580 3333 2.330216 AGACAGTAACCCTCAAGTGCT 58.670 47.619 0.00 0.00 0.00 4.40
2581 3334 2.841442 AGACAGTAACCCTCAAGTGC 57.159 50.000 0.00 0.00 0.00 4.40
2582 3335 3.195825 CCCTAGACAGTAACCCTCAAGTG 59.804 52.174 0.00 0.00 0.00 3.16
2583 3336 3.442076 CCCTAGACAGTAACCCTCAAGT 58.558 50.000 0.00 0.00 0.00 3.16
2584 3337 2.766828 CCCCTAGACAGTAACCCTCAAG 59.233 54.545 0.00 0.00 0.00 3.02
2585 3338 2.829023 CCCCTAGACAGTAACCCTCAA 58.171 52.381 0.00 0.00 0.00 3.02
2586 3339 1.621622 GCCCCTAGACAGTAACCCTCA 60.622 57.143 0.00 0.00 0.00 3.86
2587 3340 1.121378 GCCCCTAGACAGTAACCCTC 58.879 60.000 0.00 0.00 0.00 4.30
2588 3341 0.416231 TGCCCCTAGACAGTAACCCT 59.584 55.000 0.00 0.00 0.00 4.34
2589 3342 0.540454 GTGCCCCTAGACAGTAACCC 59.460 60.000 0.00 0.00 0.00 4.11
2590 3343 1.481363 GAGTGCCCCTAGACAGTAACC 59.519 57.143 0.00 0.00 0.00 2.85
2591 3344 2.176889 TGAGTGCCCCTAGACAGTAAC 58.823 52.381 0.00 0.00 0.00 2.50
2592 3345 2.615986 TGAGTGCCCCTAGACAGTAA 57.384 50.000 0.00 0.00 0.00 2.24
2593 3346 2.565834 GTTTGAGTGCCCCTAGACAGTA 59.434 50.000 0.00 0.00 0.00 2.74
2594 3347 1.348036 GTTTGAGTGCCCCTAGACAGT 59.652 52.381 0.00 0.00 0.00 3.55
2595 3348 1.347707 TGTTTGAGTGCCCCTAGACAG 59.652 52.381 0.00 0.00 0.00 3.51
2596 3349 1.429930 TGTTTGAGTGCCCCTAGACA 58.570 50.000 0.00 0.00 0.00 3.41
2597 3350 2.290323 ACATGTTTGAGTGCCCCTAGAC 60.290 50.000 0.00 0.00 0.00 2.59
2598 3351 1.985159 ACATGTTTGAGTGCCCCTAGA 59.015 47.619 0.00 0.00 0.00 2.43
2599 3352 2.496899 ACATGTTTGAGTGCCCCTAG 57.503 50.000 0.00 0.00 0.00 3.02
2600 3353 4.584638 AATACATGTTTGAGTGCCCCTA 57.415 40.909 2.30 0.00 0.00 3.53
2601 3354 3.456380 AATACATGTTTGAGTGCCCCT 57.544 42.857 2.30 0.00 0.00 4.79
2602 3355 5.652994 TTTAATACATGTTTGAGTGCCCC 57.347 39.130 2.30 0.00 0.00 5.80
2603 3356 6.630071 ACATTTAATACATGTTTGAGTGCCC 58.370 36.000 2.30 0.00 30.22 5.36
2737 3490 9.995003 TGTGGAATATAAAAGCTTTCATGTTTT 57.005 25.926 13.10 0.00 0.00 2.43
3169 3922 7.433708 TTCATGAATAATTTCAGTCACGTGT 57.566 32.000 16.51 0.00 44.75 4.49
3170 3923 9.642312 CTATTCATGAATAATTTCAGTCACGTG 57.358 33.333 24.61 9.94 44.75 4.49
3171 3924 9.383519 ACTATTCATGAATAATTTCAGTCACGT 57.616 29.630 24.61 13.70 44.75 4.49
3186 3939 9.567776 TCACCTGAGTTAAAAACTATTCATGAA 57.432 29.630 11.26 11.26 43.03 2.57
3187 3940 9.567776 TTCACCTGAGTTAAAAACTATTCATGA 57.432 29.630 0.00 0.00 43.03 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.