Multiple sequence alignment - TraesCS5B01G075500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G075500 chr5B 100.000 4544 0 0 1 4544 90072427 90076970 0.000000e+00 8392.0
1 TraesCS5B01G075500 chr5B 96.985 199 5 1 1 198 592773098 592772900 2.620000e-87 333.0
2 TraesCS5B01G075500 chr5B 96.970 198 6 0 1 198 673371622 673371819 2.620000e-87 333.0
3 TraesCS5B01G075500 chr5B 96.970 198 6 0 1 198 694869812 694869615 2.620000e-87 333.0
4 TraesCS5B01G075500 chr5B 80.676 207 38 2 199 404 134053984 134053779 4.710000e-35 159.0
5 TraesCS5B01G075500 chr5B 74.405 336 55 20 444 757 448286292 448285966 1.030000e-21 115.0
6 TraesCS5B01G075500 chr5D 95.250 3284 104 29 444 3714 81731940 81735184 0.000000e+00 5153.0
7 TraesCS5B01G075500 chr5D 96.893 708 19 3 3839 4544 81735182 81735888 0.000000e+00 1182.0
8 TraesCS5B01G075500 chr5D 81.159 207 30 5 192 393 43082584 43082382 1.690000e-34 158.0
9 TraesCS5B01G075500 chr5D 81.218 197 32 2 199 391 411155699 411155894 2.190000e-33 154.0
10 TraesCS5B01G075500 chr5A 92.516 3287 170 38 470 3727 77785004 77788243 0.000000e+00 4638.0
11 TraesCS5B01G075500 chr5A 77.410 363 54 18 443 791 708357205 708356857 1.670000e-44 191.0
12 TraesCS5B01G075500 chr1B 97.475 198 5 0 1 198 564510586 564510783 5.630000e-89 339.0
13 TraesCS5B01G075500 chr1B 96.970 198 6 0 1 198 815655 815458 2.620000e-87 333.0
14 TraesCS5B01G075500 chr1B 96.970 198 6 0 1 198 564475596 564475793 2.620000e-87 333.0
15 TraesCS5B01G075500 chr1B 97.449 196 4 1 4 198 687778966 687778771 2.620000e-87 333.0
16 TraesCS5B01G075500 chr1B 80.054 371 34 17 443 790 593225585 593225232 5.880000e-59 239.0
17 TraesCS5B01G075500 chr1B 81.560 141 22 4 444 583 53360371 53360508 3.720000e-21 113.0
18 TraesCS5B01G075500 chr1B 94.737 38 2 0 4360 4397 573144575 573144612 4.910000e-05 60.2
19 TraesCS5B01G075500 chrUn 96.970 198 6 0 1 198 86725019 86725216 2.620000e-87 333.0
20 TraesCS5B01G075500 chr7B 96.970 198 6 0 1 198 704394394 704394591 2.620000e-87 333.0
21 TraesCS5B01G075500 chr7B 78.302 212 41 4 199 407 633043908 633044117 1.030000e-26 132.0
22 TraesCS5B01G075500 chr6B 82.879 257 20 15 502 743 175330799 175330552 4.610000e-50 209.0
23 TraesCS5B01G075500 chr6B 78.440 218 37 6 199 415 702984917 702985125 2.850000e-27 134.0
24 TraesCS5B01G075500 chr3B 83.838 198 30 2 199 395 416035780 416035976 2.160000e-43 187.0
25 TraesCS5B01G075500 chr1A 87.857 140 15 2 444 583 430238051 430237914 3.640000e-36 163.0
26 TraesCS5B01G075500 chr1A 85.714 140 16 3 444 583 430237545 430237680 1.320000e-30 145.0
27 TraesCS5B01G075500 chr7D 77.273 308 47 14 466 759 28339485 28339187 4.710000e-35 159.0
28 TraesCS5B01G075500 chr2B 80.189 212 34 5 199 404 33546331 33546122 7.870000e-33 152.0
29 TraesCS5B01G075500 chr3D 81.287 171 32 0 199 369 446115465 446115635 6.130000e-29 139.0
30 TraesCS5B01G075500 chr3D 78.000 200 33 7 199 393 7975938 7975745 1.030000e-21 115.0
31 TraesCS5B01G075500 chr3A 78.409 176 15 11 633 791 729350451 729350620 4.840000e-15 93.5
32 TraesCS5B01G075500 chr1D 73.958 192 35 11 4330 4517 423733879 423734059 3.800000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G075500 chr5B 90072427 90076970 4543 False 8392.0 8392 100.0000 1 4544 1 chr5B.!!$F1 4543
1 TraesCS5B01G075500 chr5D 81731940 81735888 3948 False 3167.5 5153 96.0715 444 4544 2 chr5D.!!$F2 4100
2 TraesCS5B01G075500 chr5A 77785004 77788243 3239 False 4638.0 4638 92.5160 470 3727 1 chr5A.!!$F1 3257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.037326 TTTCGGCTCGCTTCAGTGAT 60.037 50.0 0.0 0.0 33.67 3.06 F
296 297 0.037326 TTCGGCTCGCTTCAGTGATT 60.037 50.0 0.0 0.0 33.67 2.57 F
441 442 0.104120 GCCTCCTTTTGCGTGGTTTT 59.896 50.0 0.0 0.0 0.00 2.43 F
2238 2253 0.793861 GCATCGTCGCCAAGTTTGTA 59.206 50.0 0.0 0.0 0.00 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2199 2214 0.031585 CGACGACCAAGAACACCTCA 59.968 55.000 0.0 0.0 0.0 3.86 R
2388 2403 1.806542 ACCAGCACGTTGATCATGAAC 59.193 47.619 0.0 0.0 0.0 3.18 R
2495 2510 0.605589 CTCCTCGCTGACCTTCTTGT 59.394 55.000 0.0 0.0 0.0 3.16 R
3824 3855 0.744281 TGTCTGTGTTGAGAGTCGCA 59.256 50.000 0.0 0.0 0.0 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.561143 ACTTGGTACATGAAAACCAGCA 58.439 40.909 15.43 5.59 46.11 4.41
23 24 3.569701 ACTTGGTACATGAAAACCAGCAG 59.430 43.478 15.43 13.92 46.11 4.24
24 25 3.500448 TGGTACATGAAAACCAGCAGA 57.500 42.857 13.06 0.00 40.84 4.26
25 26 3.411446 TGGTACATGAAAACCAGCAGAG 58.589 45.455 13.06 0.00 40.84 3.35
26 27 3.072330 TGGTACATGAAAACCAGCAGAGA 59.928 43.478 13.06 0.00 40.84 3.10
27 28 3.686726 GGTACATGAAAACCAGCAGAGAG 59.313 47.826 0.00 0.00 35.73 3.20
28 29 3.498774 ACATGAAAACCAGCAGAGAGT 57.501 42.857 0.00 0.00 0.00 3.24
29 30 3.406764 ACATGAAAACCAGCAGAGAGTC 58.593 45.455 0.00 0.00 0.00 3.36
30 31 3.072184 ACATGAAAACCAGCAGAGAGTCT 59.928 43.478 0.00 0.00 0.00 3.24
31 32 3.117491 TGAAAACCAGCAGAGAGTCTG 57.883 47.619 0.00 0.00 46.90 3.51
34 35 3.307445 CCAGCAGAGAGTCTGGGG 58.693 66.667 0.00 0.00 44.43 4.96
35 36 2.365586 CCAGCAGAGAGTCTGGGGG 61.366 68.421 0.00 0.00 44.43 5.40
53 54 4.684484 GGGGGACGAATAGTTTGTATCT 57.316 45.455 0.00 0.00 0.00 1.98
54 55 4.377897 GGGGGACGAATAGTTTGTATCTG 58.622 47.826 0.00 0.00 0.00 2.90
55 56 4.100498 GGGGGACGAATAGTTTGTATCTGA 59.900 45.833 0.00 0.00 0.00 3.27
56 57 5.395990 GGGGGACGAATAGTTTGTATCTGAA 60.396 44.000 0.00 0.00 0.00 3.02
57 58 5.522824 GGGGACGAATAGTTTGTATCTGAAC 59.477 44.000 0.00 0.00 0.00 3.18
58 59 6.103997 GGGACGAATAGTTTGTATCTGAACA 58.896 40.000 0.00 0.00 0.00 3.18
59 60 6.761714 GGGACGAATAGTTTGTATCTGAACAT 59.238 38.462 0.00 0.00 0.00 2.71
60 61 7.280205 GGGACGAATAGTTTGTATCTGAACATT 59.720 37.037 0.00 0.00 0.00 2.71
61 62 9.309516 GGACGAATAGTTTGTATCTGAACATTA 57.690 33.333 0.00 0.00 0.00 1.90
69 70 9.442047 AGTTTGTATCTGAACATTAAAGAGGAG 57.558 33.333 0.00 0.00 0.00 3.69
70 71 7.849804 TTGTATCTGAACATTAAAGAGGAGC 57.150 36.000 0.00 0.00 0.00 4.70
71 72 6.946340 TGTATCTGAACATTAAAGAGGAGCA 58.054 36.000 0.00 0.00 0.00 4.26
72 73 6.818644 TGTATCTGAACATTAAAGAGGAGCAC 59.181 38.462 0.00 0.00 0.00 4.40
73 74 4.245660 TCTGAACATTAAAGAGGAGCACG 58.754 43.478 0.00 0.00 0.00 5.34
74 75 4.021456 TCTGAACATTAAAGAGGAGCACGA 60.021 41.667 0.00 0.00 0.00 4.35
75 76 3.994392 TGAACATTAAAGAGGAGCACGAC 59.006 43.478 0.00 0.00 0.00 4.34
76 77 2.973945 ACATTAAAGAGGAGCACGACC 58.026 47.619 0.00 0.00 0.00 4.79
77 78 2.567615 ACATTAAAGAGGAGCACGACCT 59.432 45.455 0.00 0.00 40.80 3.85
90 91 3.814577 CGACCTCGTTGGAACTGAT 57.185 52.632 4.38 0.00 39.71 2.90
91 92 2.080286 CGACCTCGTTGGAACTGATT 57.920 50.000 4.38 0.00 39.71 2.57
92 93 2.413837 CGACCTCGTTGGAACTGATTT 58.586 47.619 4.38 0.00 39.71 2.17
93 94 2.157668 CGACCTCGTTGGAACTGATTTG 59.842 50.000 4.38 0.00 39.71 2.32
94 95 3.139077 GACCTCGTTGGAACTGATTTGT 58.861 45.455 4.38 0.00 39.71 2.83
95 96 3.551846 ACCTCGTTGGAACTGATTTGTT 58.448 40.909 4.38 0.00 39.71 2.83
96 97 3.315191 ACCTCGTTGGAACTGATTTGTTG 59.685 43.478 4.38 0.00 39.71 3.33
97 98 3.315191 CCTCGTTGGAACTGATTTGTTGT 59.685 43.478 0.00 0.00 38.35 3.32
98 99 4.282068 CTCGTTGGAACTGATTTGTTGTG 58.718 43.478 0.00 0.00 0.00 3.33
99 100 3.692101 TCGTTGGAACTGATTTGTTGTGT 59.308 39.130 0.00 0.00 0.00 3.72
100 101 3.790820 CGTTGGAACTGATTTGTTGTGTG 59.209 43.478 0.00 0.00 0.00 3.82
101 102 4.674101 CGTTGGAACTGATTTGTTGTGTGT 60.674 41.667 0.00 0.00 0.00 3.72
102 103 5.167845 GTTGGAACTGATTTGTTGTGTGTT 58.832 37.500 0.00 0.00 0.00 3.32
103 104 4.992688 TGGAACTGATTTGTTGTGTGTTC 58.007 39.130 0.00 0.00 33.70 3.18
104 105 4.142271 TGGAACTGATTTGTTGTGTGTTCC 60.142 41.667 13.17 13.17 46.95 3.62
105 106 4.142271 GGAACTGATTTGTTGTGTGTTCCA 60.142 41.667 14.64 0.00 46.39 3.53
106 107 5.451798 GGAACTGATTTGTTGTGTGTTCCAT 60.452 40.000 14.64 0.00 46.39 3.41
107 108 5.596836 ACTGATTTGTTGTGTGTTCCATT 57.403 34.783 0.00 0.00 0.00 3.16
108 109 5.976458 ACTGATTTGTTGTGTGTTCCATTT 58.024 33.333 0.00 0.00 0.00 2.32
109 110 5.811613 ACTGATTTGTTGTGTGTTCCATTTG 59.188 36.000 0.00 0.00 0.00 2.32
110 111 5.970592 TGATTTGTTGTGTGTTCCATTTGA 58.029 33.333 0.00 0.00 0.00 2.69
111 112 6.041511 TGATTTGTTGTGTGTTCCATTTGAG 58.958 36.000 0.00 0.00 0.00 3.02
112 113 4.383850 TTGTTGTGTGTTCCATTTGAGG 57.616 40.909 0.00 0.00 0.00 3.86
113 114 3.625853 TGTTGTGTGTTCCATTTGAGGA 58.374 40.909 0.00 0.00 35.41 3.71
114 115 3.631686 TGTTGTGTGTTCCATTTGAGGAG 59.368 43.478 0.00 0.00 39.25 3.69
115 116 3.576078 TGTGTGTTCCATTTGAGGAGT 57.424 42.857 0.00 0.00 39.25 3.85
116 117 3.897239 TGTGTGTTCCATTTGAGGAGTT 58.103 40.909 0.00 0.00 39.25 3.01
117 118 3.882888 TGTGTGTTCCATTTGAGGAGTTC 59.117 43.478 0.00 0.00 39.25 3.01
118 119 4.137543 GTGTGTTCCATTTGAGGAGTTCT 58.862 43.478 0.00 0.00 39.25 3.01
119 120 4.580580 GTGTGTTCCATTTGAGGAGTTCTT 59.419 41.667 0.00 0.00 39.25 2.52
120 121 4.821805 TGTGTTCCATTTGAGGAGTTCTTC 59.178 41.667 0.00 0.00 39.25 2.87
121 122 4.065088 TGTTCCATTTGAGGAGTTCTTCG 58.935 43.478 0.00 0.00 39.25 3.79
122 123 2.699954 TCCATTTGAGGAGTTCTTCGC 58.300 47.619 0.00 0.00 32.77 4.70
123 124 1.394917 CCATTTGAGGAGTTCTTCGCG 59.605 52.381 0.00 0.00 0.00 5.87
124 125 2.069273 CATTTGAGGAGTTCTTCGCGT 58.931 47.619 5.77 0.00 0.00 6.01
125 126 2.234300 TTTGAGGAGTTCTTCGCGTT 57.766 45.000 5.77 0.00 0.00 4.84
126 127 2.234300 TTGAGGAGTTCTTCGCGTTT 57.766 45.000 5.77 0.00 0.00 3.60
127 128 2.234300 TGAGGAGTTCTTCGCGTTTT 57.766 45.000 5.77 0.00 0.00 2.43
128 129 2.557317 TGAGGAGTTCTTCGCGTTTTT 58.443 42.857 5.77 0.00 0.00 1.94
129 130 2.542595 TGAGGAGTTCTTCGCGTTTTTC 59.457 45.455 5.77 0.00 0.00 2.29
130 131 2.542595 GAGGAGTTCTTCGCGTTTTTCA 59.457 45.455 5.77 0.00 0.00 2.69
131 132 2.940410 AGGAGTTCTTCGCGTTTTTCAA 59.060 40.909 5.77 0.00 0.00 2.69
132 133 3.564225 AGGAGTTCTTCGCGTTTTTCAAT 59.436 39.130 5.77 0.00 0.00 2.57
133 134 3.906601 GGAGTTCTTCGCGTTTTTCAATC 59.093 43.478 5.77 0.00 0.00 2.67
134 135 4.523813 GAGTTCTTCGCGTTTTTCAATCA 58.476 39.130 5.77 0.00 0.00 2.57
135 136 4.915704 AGTTCTTCGCGTTTTTCAATCAA 58.084 34.783 5.77 0.00 0.00 2.57
136 137 5.336744 AGTTCTTCGCGTTTTTCAATCAAA 58.663 33.333 5.77 0.00 0.00 2.69
137 138 5.802956 AGTTCTTCGCGTTTTTCAATCAAAA 59.197 32.000 5.77 0.00 31.73 2.44
138 139 5.864830 TCTTCGCGTTTTTCAATCAAAAG 57.135 34.783 5.77 0.00 35.34 2.27
139 140 4.737765 TCTTCGCGTTTTTCAATCAAAAGG 59.262 37.500 5.77 0.00 35.34 3.11
140 141 2.792116 TCGCGTTTTTCAATCAAAAGGC 59.208 40.909 5.77 11.64 46.68 4.35
141 142 3.519908 GCGTTTTTCAATCAAAAGGCC 57.480 42.857 10.89 0.00 45.44 5.19
142 143 2.223144 GCGTTTTTCAATCAAAAGGCCC 59.777 45.455 0.00 0.00 45.44 5.80
143 144 3.727726 CGTTTTTCAATCAAAAGGCCCT 58.272 40.909 0.00 0.00 35.34 5.19
144 145 3.740832 CGTTTTTCAATCAAAAGGCCCTC 59.259 43.478 0.00 0.00 35.34 4.30
145 146 3.658757 TTTTCAATCAAAAGGCCCTCG 57.341 42.857 0.00 0.00 30.07 4.63
146 147 2.577606 TTCAATCAAAAGGCCCTCGA 57.422 45.000 0.00 0.00 0.00 4.04
147 148 2.806945 TCAATCAAAAGGCCCTCGAT 57.193 45.000 0.00 0.00 0.00 3.59
148 149 3.924114 TCAATCAAAAGGCCCTCGATA 57.076 42.857 0.00 0.00 0.00 2.92
149 150 4.229304 TCAATCAAAAGGCCCTCGATAA 57.771 40.909 0.00 0.00 0.00 1.75
150 151 4.594970 TCAATCAAAAGGCCCTCGATAAA 58.405 39.130 0.00 0.00 0.00 1.40
151 152 5.200483 TCAATCAAAAGGCCCTCGATAAAT 58.800 37.500 0.00 0.00 0.00 1.40
152 153 5.656416 TCAATCAAAAGGCCCTCGATAAATT 59.344 36.000 0.00 0.00 0.00 1.82
153 154 6.831353 TCAATCAAAAGGCCCTCGATAAATTA 59.169 34.615 0.00 0.00 0.00 1.40
154 155 7.340743 TCAATCAAAAGGCCCTCGATAAATTAA 59.659 33.333 0.00 0.00 0.00 1.40
155 156 6.445357 TCAAAAGGCCCTCGATAAATTAAC 57.555 37.500 0.00 0.00 0.00 2.01
156 157 5.065474 TCAAAAGGCCCTCGATAAATTAACG 59.935 40.000 0.00 0.00 0.00 3.18
157 158 3.121738 AGGCCCTCGATAAATTAACGG 57.878 47.619 0.00 0.00 0.00 4.44
158 159 2.436911 AGGCCCTCGATAAATTAACGGT 59.563 45.455 0.00 0.00 0.00 4.83
159 160 2.804527 GGCCCTCGATAAATTAACGGTC 59.195 50.000 2.99 0.00 0.00 4.79
160 161 3.493873 GGCCCTCGATAAATTAACGGTCT 60.494 47.826 2.99 0.00 0.00 3.85
161 162 4.124970 GCCCTCGATAAATTAACGGTCTT 58.875 43.478 2.99 0.00 0.00 3.01
162 163 4.573607 GCCCTCGATAAATTAACGGTCTTT 59.426 41.667 2.99 0.00 0.00 2.52
163 164 5.065602 GCCCTCGATAAATTAACGGTCTTTT 59.934 40.000 2.99 0.00 0.00 2.27
164 165 6.258507 GCCCTCGATAAATTAACGGTCTTTTA 59.741 38.462 2.99 0.00 0.00 1.52
165 166 7.624661 CCCTCGATAAATTAACGGTCTTTTAC 58.375 38.462 2.99 0.00 0.00 2.01
166 167 7.493645 CCCTCGATAAATTAACGGTCTTTTACT 59.506 37.037 2.99 0.00 0.00 2.24
167 168 9.520204 CCTCGATAAATTAACGGTCTTTTACTA 57.480 33.333 2.99 0.00 0.00 1.82
171 172 9.911980 GATAAATTAACGGTCTTTTACTACTGC 57.088 33.333 0.00 0.00 0.00 4.40
172 173 6.732531 AATTAACGGTCTTTTACTACTGCC 57.267 37.500 0.00 0.00 0.00 4.85
173 174 5.473066 TTAACGGTCTTTTACTACTGCCT 57.527 39.130 0.00 0.00 0.00 4.75
174 175 3.314541 ACGGTCTTTTACTACTGCCTG 57.685 47.619 0.00 0.00 0.00 4.85
175 176 2.631545 ACGGTCTTTTACTACTGCCTGT 59.368 45.455 0.00 0.00 0.00 4.00
176 177 3.828451 ACGGTCTTTTACTACTGCCTGTA 59.172 43.478 0.00 0.00 0.00 2.74
177 178 4.281688 ACGGTCTTTTACTACTGCCTGTAA 59.718 41.667 0.00 0.00 0.00 2.41
178 179 4.863131 CGGTCTTTTACTACTGCCTGTAAG 59.137 45.833 0.00 0.00 31.46 2.34
179 180 5.566230 CGGTCTTTTACTACTGCCTGTAAGT 60.566 44.000 0.00 0.00 31.46 2.24
180 181 6.349611 CGGTCTTTTACTACTGCCTGTAAGTA 60.350 42.308 0.00 0.00 31.46 2.24
181 182 6.810676 GGTCTTTTACTACTGCCTGTAAGTAC 59.189 42.308 0.00 0.00 31.46 2.73
182 183 7.309683 GGTCTTTTACTACTGCCTGTAAGTACT 60.310 40.741 0.00 0.00 31.46 2.73
183 184 8.734386 GTCTTTTACTACTGCCTGTAAGTACTA 58.266 37.037 0.00 0.00 31.46 1.82
184 185 9.471702 TCTTTTACTACTGCCTGTAAGTACTAT 57.528 33.333 0.00 0.00 31.46 2.12
188 189 7.957992 ACTACTGCCTGTAAGTACTATTTCT 57.042 36.000 0.00 0.00 0.00 2.52
189 190 7.773149 ACTACTGCCTGTAAGTACTATTTCTG 58.227 38.462 0.00 0.00 0.00 3.02
190 191 6.607004 ACTGCCTGTAAGTACTATTTCTGT 57.393 37.500 0.00 0.00 0.00 3.41
191 192 6.631962 ACTGCCTGTAAGTACTATTTCTGTC 58.368 40.000 0.00 0.00 0.00 3.51
192 193 6.210784 ACTGCCTGTAAGTACTATTTCTGTCA 59.789 38.462 0.00 0.00 0.00 3.58
193 194 7.093289 ACTGCCTGTAAGTACTATTTCTGTCAT 60.093 37.037 0.00 0.00 0.00 3.06
194 195 7.620880 TGCCTGTAAGTACTATTTCTGTCATT 58.379 34.615 0.00 0.00 0.00 2.57
195 196 8.755028 TGCCTGTAAGTACTATTTCTGTCATTA 58.245 33.333 0.00 0.00 0.00 1.90
196 197 9.595823 GCCTGTAAGTACTATTTCTGTCATTAA 57.404 33.333 0.00 0.00 0.00 1.40
199 200 9.595823 TGTAAGTACTATTTCTGTCATTAAGGC 57.404 33.333 0.00 0.00 0.00 4.35
200 201 9.595823 GTAAGTACTATTTCTGTCATTAAGGCA 57.404 33.333 0.00 0.00 0.00 4.75
201 202 8.494016 AAGTACTATTTCTGTCATTAAGGCAC 57.506 34.615 0.00 0.00 0.00 5.01
202 203 6.757010 AGTACTATTTCTGTCATTAAGGCACG 59.243 38.462 0.00 0.00 0.00 5.34
203 204 5.730550 ACTATTTCTGTCATTAAGGCACGA 58.269 37.500 0.00 0.00 0.00 4.35
204 205 6.349300 ACTATTTCTGTCATTAAGGCACGAT 58.651 36.000 0.00 0.00 0.00 3.73
205 206 4.944962 TTTCTGTCATTAAGGCACGATG 57.055 40.909 0.00 0.00 0.00 3.84
206 207 3.885724 TCTGTCATTAAGGCACGATGA 57.114 42.857 0.00 0.00 0.00 2.92
207 208 3.521560 TCTGTCATTAAGGCACGATGAC 58.478 45.455 15.68 15.68 46.11 3.06
208 209 3.195610 TCTGTCATTAAGGCACGATGACT 59.804 43.478 20.21 0.88 46.09 3.41
210 211 3.932710 TGTCATTAAGGCACGATGACTTC 59.067 43.478 20.21 0.00 43.55 3.01
211 212 3.309954 GTCATTAAGGCACGATGACTTCC 59.690 47.826 9.01 0.00 43.55 3.46
212 213 2.396590 TTAAGGCACGATGACTTCCC 57.603 50.000 9.01 0.00 43.55 3.97
213 214 0.174845 TAAGGCACGATGACTTCCCG 59.825 55.000 9.01 0.00 43.55 5.14
214 215 1.827399 AAGGCACGATGACTTCCCGT 61.827 55.000 0.87 0.00 43.55 5.28
215 216 1.375523 GGCACGATGACTTCCCGTT 60.376 57.895 0.00 0.00 33.96 4.44
216 217 0.953960 GGCACGATGACTTCCCGTTT 60.954 55.000 0.00 0.00 33.96 3.60
217 218 0.165944 GCACGATGACTTCCCGTTTG 59.834 55.000 0.00 0.00 33.96 2.93
218 219 1.508632 CACGATGACTTCCCGTTTGT 58.491 50.000 0.00 0.00 33.96 2.83
219 220 1.459592 CACGATGACTTCCCGTTTGTC 59.540 52.381 0.00 0.00 33.96 3.18
220 221 1.343465 ACGATGACTTCCCGTTTGTCT 59.657 47.619 0.00 0.00 32.03 3.41
221 222 2.559668 ACGATGACTTCCCGTTTGTCTA 59.440 45.455 0.00 0.00 32.03 2.59
222 223 2.921754 CGATGACTTCCCGTTTGTCTAC 59.078 50.000 0.00 0.00 0.00 2.59
223 224 3.367087 CGATGACTTCCCGTTTGTCTACT 60.367 47.826 0.00 0.00 0.00 2.57
224 225 4.142534 CGATGACTTCCCGTTTGTCTACTA 60.143 45.833 0.00 0.00 0.00 1.82
225 226 4.510038 TGACTTCCCGTTTGTCTACTAC 57.490 45.455 0.00 0.00 0.00 2.73
226 227 3.890756 TGACTTCCCGTTTGTCTACTACA 59.109 43.478 0.00 0.00 35.88 2.74
227 228 4.341806 TGACTTCCCGTTTGTCTACTACAA 59.658 41.667 0.00 0.00 46.41 2.41
239 240 7.443259 TTGTCTACTACAATAAAGTTTGCCC 57.557 36.000 0.00 0.00 43.22 5.36
240 241 5.640357 TGTCTACTACAATAAAGTTTGCCCG 59.360 40.000 0.00 0.00 34.29 6.13
241 242 5.064325 GTCTACTACAATAAAGTTTGCCCGG 59.936 44.000 0.00 0.00 0.00 5.73
242 243 2.490509 ACTACAATAAAGTTTGCCCGGC 59.509 45.455 1.04 1.04 0.00 6.13
243 244 1.627864 ACAATAAAGTTTGCCCGGCT 58.372 45.000 11.61 0.00 0.00 5.52
244 245 1.544246 ACAATAAAGTTTGCCCGGCTC 59.456 47.619 11.61 1.41 0.00 4.70
245 246 1.135112 CAATAAAGTTTGCCCGGCTCC 60.135 52.381 11.61 0.00 0.00 4.70
246 247 1.029947 ATAAAGTTTGCCCGGCTCCG 61.030 55.000 11.61 0.48 39.44 4.63
256 257 3.043419 CGGCTCCGGTGATAGAGG 58.957 66.667 7.92 0.00 35.56 3.69
257 258 2.565645 CGGCTCCGGTGATAGAGGG 61.566 68.421 7.92 0.00 35.56 4.30
258 259 2.210711 GGCTCCGGTGATAGAGGGG 61.211 68.421 7.92 0.00 0.00 4.79
259 260 2.873525 GCTCCGGTGATAGAGGGGC 61.874 68.421 7.92 0.00 45.02 5.80
260 261 2.520982 TCCGGTGATAGAGGGGCG 60.521 66.667 0.00 0.00 0.00 6.13
261 262 2.520982 CCGGTGATAGAGGGGCGA 60.521 66.667 0.00 0.00 0.00 5.54
262 263 1.908793 CCGGTGATAGAGGGGCGAT 60.909 63.158 0.00 0.00 0.00 4.58
263 264 1.290324 CGGTGATAGAGGGGCGATG 59.710 63.158 0.00 0.00 0.00 3.84
264 265 1.179174 CGGTGATAGAGGGGCGATGA 61.179 60.000 0.00 0.00 0.00 2.92
265 266 0.318762 GGTGATAGAGGGGCGATGAC 59.681 60.000 0.00 0.00 0.00 3.06
266 267 0.039074 GTGATAGAGGGGCGATGACG 60.039 60.000 0.00 0.00 42.93 4.35
267 268 1.179174 TGATAGAGGGGCGATGACGG 61.179 60.000 0.00 0.00 40.15 4.79
275 276 2.885644 GCGATGACGGCGACATGT 60.886 61.111 27.80 7.41 40.15 3.21
276 277 2.452813 GCGATGACGGCGACATGTT 61.453 57.895 27.80 6.62 40.15 2.71
277 278 1.966493 GCGATGACGGCGACATGTTT 61.966 55.000 27.80 6.23 40.15 2.83
278 279 0.442310 CGATGACGGCGACATGTTTT 59.558 50.000 27.80 5.83 35.72 2.43
279 280 1.526986 CGATGACGGCGACATGTTTTC 60.527 52.381 27.80 13.72 35.72 2.29
280 281 0.442310 ATGACGGCGACATGTTTTCG 59.558 50.000 22.91 6.95 39.56 3.46
281 282 1.131826 GACGGCGACATGTTTTCGG 59.868 57.895 16.62 8.82 36.96 4.30
284 285 4.745549 GCGACATGTTTTCGGCTC 57.254 55.556 0.00 0.00 36.96 4.70
285 286 1.225745 GCGACATGTTTTCGGCTCG 60.226 57.895 0.00 0.00 36.96 5.03
286 287 1.225745 CGACATGTTTTCGGCTCGC 60.226 57.895 0.00 0.00 32.66 5.03
287 288 1.626654 CGACATGTTTTCGGCTCGCT 61.627 55.000 0.00 0.00 32.66 4.93
288 289 0.517316 GACATGTTTTCGGCTCGCTT 59.483 50.000 0.00 0.00 0.00 4.68
289 290 0.517316 ACATGTTTTCGGCTCGCTTC 59.483 50.000 0.00 0.00 0.00 3.86
290 291 0.516877 CATGTTTTCGGCTCGCTTCA 59.483 50.000 0.00 0.00 0.00 3.02
291 292 0.798776 ATGTTTTCGGCTCGCTTCAG 59.201 50.000 0.00 0.00 0.00 3.02
292 293 0.531974 TGTTTTCGGCTCGCTTCAGT 60.532 50.000 0.00 0.00 0.00 3.41
293 294 0.110644 GTTTTCGGCTCGCTTCAGTG 60.111 55.000 0.00 0.00 0.00 3.66
294 295 0.249699 TTTTCGGCTCGCTTCAGTGA 60.250 50.000 0.00 0.00 0.00 3.41
295 296 0.037326 TTTCGGCTCGCTTCAGTGAT 60.037 50.000 0.00 0.00 33.67 3.06
296 297 0.037326 TTCGGCTCGCTTCAGTGATT 60.037 50.000 0.00 0.00 33.67 2.57
297 298 0.815095 TCGGCTCGCTTCAGTGATTA 59.185 50.000 0.00 0.00 33.67 1.75
298 299 1.409064 TCGGCTCGCTTCAGTGATTAT 59.591 47.619 0.00 0.00 33.67 1.28
299 300 2.621526 TCGGCTCGCTTCAGTGATTATA 59.378 45.455 0.00 0.00 33.67 0.98
300 301 2.983136 CGGCTCGCTTCAGTGATTATAG 59.017 50.000 0.00 0.00 33.67 1.31
301 302 3.551046 CGGCTCGCTTCAGTGATTATAGT 60.551 47.826 0.00 0.00 33.67 2.12
302 303 3.984633 GGCTCGCTTCAGTGATTATAGTC 59.015 47.826 0.00 0.00 33.67 2.59
303 304 3.666334 GCTCGCTTCAGTGATTATAGTCG 59.334 47.826 0.00 0.00 33.67 4.18
304 305 4.790123 GCTCGCTTCAGTGATTATAGTCGT 60.790 45.833 0.00 0.00 33.67 4.34
305 306 4.845387 TCGCTTCAGTGATTATAGTCGTC 58.155 43.478 0.00 0.00 0.00 4.20
306 307 3.659899 CGCTTCAGTGATTATAGTCGTCG 59.340 47.826 0.00 0.00 0.00 5.12
307 308 4.552184 CGCTTCAGTGATTATAGTCGTCGA 60.552 45.833 0.00 0.00 0.00 4.20
308 309 5.453648 GCTTCAGTGATTATAGTCGTCGAT 58.546 41.667 0.00 0.00 0.00 3.59
309 310 6.600350 GCTTCAGTGATTATAGTCGTCGATA 58.400 40.000 0.00 0.00 0.00 2.92
310 311 6.739100 GCTTCAGTGATTATAGTCGTCGATAG 59.261 42.308 0.00 0.00 0.00 2.08
326 327 5.948992 TCGATAGATGGTCTATGAGTGTG 57.051 43.478 4.32 0.00 39.63 3.82
327 328 4.762251 TCGATAGATGGTCTATGAGTGTGG 59.238 45.833 4.32 0.00 39.63 4.17
328 329 4.762251 CGATAGATGGTCTATGAGTGTGGA 59.238 45.833 4.32 0.00 39.63 4.02
329 330 5.417266 CGATAGATGGTCTATGAGTGTGGAT 59.583 44.000 4.32 0.00 39.63 3.41
330 331 4.952071 AGATGGTCTATGAGTGTGGATG 57.048 45.455 0.00 0.00 0.00 3.51
331 332 4.293494 AGATGGTCTATGAGTGTGGATGT 58.707 43.478 0.00 0.00 0.00 3.06
332 333 5.458595 AGATGGTCTATGAGTGTGGATGTA 58.541 41.667 0.00 0.00 0.00 2.29
333 334 5.899547 AGATGGTCTATGAGTGTGGATGTAA 59.100 40.000 0.00 0.00 0.00 2.41
334 335 6.556495 AGATGGTCTATGAGTGTGGATGTAAT 59.444 38.462 0.00 0.00 0.00 1.89
335 336 6.560003 TGGTCTATGAGTGTGGATGTAATT 57.440 37.500 0.00 0.00 0.00 1.40
336 337 6.957631 TGGTCTATGAGTGTGGATGTAATTT 58.042 36.000 0.00 0.00 0.00 1.82
337 338 7.402054 TGGTCTATGAGTGTGGATGTAATTTT 58.598 34.615 0.00 0.00 0.00 1.82
338 339 7.888021 TGGTCTATGAGTGTGGATGTAATTTTT 59.112 33.333 0.00 0.00 0.00 1.94
339 340 9.391006 GGTCTATGAGTGTGGATGTAATTTTTA 57.609 33.333 0.00 0.00 0.00 1.52
347 348 9.528489 AGTGTGGATGTAATTTTTACTTATGGT 57.472 29.630 0.00 0.00 0.00 3.55
348 349 9.567848 GTGTGGATGTAATTTTTACTTATGGTG 57.432 33.333 0.00 0.00 0.00 4.17
349 350 9.303116 TGTGGATGTAATTTTTACTTATGGTGT 57.697 29.630 0.00 0.00 0.00 4.16
362 363 9.492973 TTTACTTATGGTGTTCTTTGTACTACC 57.507 33.333 0.00 0.00 0.00 3.18
363 364 7.312415 ACTTATGGTGTTCTTTGTACTACCT 57.688 36.000 0.00 0.00 0.00 3.08
364 365 7.742767 ACTTATGGTGTTCTTTGTACTACCTT 58.257 34.615 0.00 0.00 0.00 3.50
365 366 7.660208 ACTTATGGTGTTCTTTGTACTACCTTG 59.340 37.037 0.00 0.00 0.00 3.61
366 367 5.617528 TGGTGTTCTTTGTACTACCTTGA 57.382 39.130 0.00 0.00 0.00 3.02
367 368 5.362263 TGGTGTTCTTTGTACTACCTTGAC 58.638 41.667 0.00 0.00 0.00 3.18
368 369 5.104859 TGGTGTTCTTTGTACTACCTTGACA 60.105 40.000 0.00 0.00 0.00 3.58
369 370 5.465724 GGTGTTCTTTGTACTACCTTGACAG 59.534 44.000 0.00 0.00 0.00 3.51
385 386 7.395190 CCTTGACAGGTGATGAATAAATTGA 57.605 36.000 0.00 0.00 35.06 2.57
386 387 7.829725 CCTTGACAGGTGATGAATAAATTGAA 58.170 34.615 0.00 0.00 35.06 2.69
387 388 8.306038 CCTTGACAGGTGATGAATAAATTGAAA 58.694 33.333 0.00 0.00 35.06 2.69
388 389 9.350357 CTTGACAGGTGATGAATAAATTGAAAG 57.650 33.333 0.00 0.00 0.00 2.62
389 390 8.408043 TGACAGGTGATGAATAAATTGAAAGT 57.592 30.769 0.00 0.00 0.00 2.66
390 391 8.859090 TGACAGGTGATGAATAAATTGAAAGTT 58.141 29.630 0.00 0.00 0.00 2.66
391 392 9.696917 GACAGGTGATGAATAAATTGAAAGTTT 57.303 29.630 0.00 0.00 0.00 2.66
428 429 2.980246 AAAGTAGGCAAAAGCCTCCT 57.020 45.000 12.98 3.76 41.06 3.69
429 430 2.980246 AAGTAGGCAAAAGCCTCCTT 57.020 45.000 12.98 10.40 41.06 3.36
430 431 2.980246 AGTAGGCAAAAGCCTCCTTT 57.020 45.000 12.98 0.00 42.93 3.11
436 437 3.965780 AAAAGCCTCCTTTTGCGTG 57.034 47.368 1.02 0.00 46.58 5.34
437 438 0.389025 AAAAGCCTCCTTTTGCGTGG 59.611 50.000 1.02 0.00 46.58 4.94
438 439 0.755327 AAAGCCTCCTTTTGCGTGGT 60.755 50.000 0.00 0.00 38.06 4.16
439 440 0.755327 AAGCCTCCTTTTGCGTGGTT 60.755 50.000 0.00 0.00 0.00 3.67
440 441 0.755327 AGCCTCCTTTTGCGTGGTTT 60.755 50.000 0.00 0.00 0.00 3.27
441 442 0.104120 GCCTCCTTTTGCGTGGTTTT 59.896 50.000 0.00 0.00 0.00 2.43
442 443 1.472552 GCCTCCTTTTGCGTGGTTTTT 60.473 47.619 0.00 0.00 0.00 1.94
538 539 5.979517 ACAAATGTTCTAAGAGCTTGCAAAC 59.020 36.000 0.00 0.00 0.00 2.93
552 553 5.464389 AGCTTGCAAACTTTCATCATGAAAC 59.536 36.000 8.85 0.03 41.02 2.78
556 557 4.148696 GCAAACTTTCATCATGAAACCACG 59.851 41.667 8.85 2.38 41.02 4.94
585 586 4.209080 GGAAGTTGTGGCAAAAGAAAATCG 59.791 41.667 0.00 0.00 0.00 3.34
588 589 4.984161 AGTTGTGGCAAAAGAAAATCGATG 59.016 37.500 0.00 0.00 0.00 3.84
593 594 5.633182 GTGGCAAAAGAAAATCGATGCTTTA 59.367 36.000 16.62 4.26 34.37 1.85
606 607 8.620533 AATCGATGCTTTAAAAATGCTACTTC 57.379 30.769 0.00 0.00 0.00 3.01
649 658 1.757682 AGTTTTGCCACGACTTCCAA 58.242 45.000 0.00 0.00 0.00 3.53
658 667 2.095853 CCACGACTTCCAATGATTTCGG 59.904 50.000 0.00 0.00 32.28 4.30
694 703 9.630098 TTTCAAGCTCTTAGAATATTTGCAAAG 57.370 29.630 18.19 0.90 0.00 2.77
695 704 8.340618 TCAAGCTCTTAGAATATTTGCAAAGT 57.659 30.769 18.19 6.04 0.00 2.66
698 707 8.976986 AGCTCTTAGAATATTTGCAAAGTTTG 57.023 30.769 18.19 11.41 0.00 2.93
699 708 8.579863 AGCTCTTAGAATATTTGCAAAGTTTGT 58.420 29.630 18.19 13.44 0.00 2.83
701 710 9.897744 CTCTTAGAATATTTGCAAAGTTTGTCA 57.102 29.630 18.19 12.01 0.00 3.58
770 781 7.615403 AGTTACTGTTCATCTTTATGAGCTCA 58.385 34.615 20.79 20.79 42.97 4.26
772 783 5.426504 ACTGTTCATCTTTATGAGCTCAGG 58.573 41.667 22.96 11.79 42.97 3.86
789 800 2.038557 TCAGGTGTAGAAGGGCACTTTC 59.961 50.000 0.84 0.00 36.97 2.62
1116 1131 3.323775 TGACCCCCTCAAGTTCTACTTT 58.676 45.455 0.00 0.00 36.03 2.66
1125 1140 4.240323 TCAAGTTCTACTTTCCCCTCCTT 58.760 43.478 0.00 0.00 36.03 3.36
1167 1182 0.982852 TCATCCTCTCCCACGCCATT 60.983 55.000 0.00 0.00 0.00 3.16
1227 1242 1.663379 CCCAGATCCTCGTACGTGCA 61.663 60.000 16.05 0.00 0.00 4.57
1251 1266 2.280052 GCTCTCGCTCCTCCATGC 60.280 66.667 0.00 0.00 0.00 4.06
1579 1594 1.872234 CACCTCGCCATGTACGTCG 60.872 63.158 0.00 0.00 0.00 5.12
1581 1596 2.954868 CTCGCCATGTACGTCGCC 60.955 66.667 0.00 0.00 0.00 5.54
1674 1689 1.153549 GTCGCTCTCGGCCTTCATT 60.154 57.895 0.00 0.00 37.74 2.57
1893 1908 4.051167 CTCATGGGGCTGGTGGCA 62.051 66.667 0.00 0.00 44.01 4.92
2174 2189 3.270027 GGATGAACGTCCACATGATCAA 58.730 45.455 0.00 0.00 38.20 2.57
2238 2253 0.793861 GCATCGTCGCCAAGTTTGTA 59.206 50.000 0.00 0.00 0.00 2.41
2355 2370 2.203070 GCCTCGGCGTTCATGGAT 60.203 61.111 6.85 0.00 0.00 3.41
2506 2521 1.070134 CGGTGGAGAACAAGAAGGTCA 59.930 52.381 0.00 0.00 35.97 4.02
2610 2625 3.129502 CCGACTACGCCGGTCTCA 61.130 66.667 1.90 0.00 41.91 3.27
2629 2644 2.380932 TCAGTGTACCTCCTCCACCTTA 59.619 50.000 0.00 0.00 0.00 2.69
2675 2690 2.821810 GCTCCGCTCCTTCAAGCC 60.822 66.667 0.00 0.00 39.17 4.35
2677 2692 4.082523 TCCGCTCCTTCAAGCCCG 62.083 66.667 0.00 0.00 39.17 6.13
2684 2699 4.697756 CTTCAAGCCCGGCGACCA 62.698 66.667 9.30 0.00 0.00 4.02
2832 2847 1.204062 CACCATGCACAACGACGTC 59.796 57.895 5.18 5.18 0.00 4.34
2957 2972 2.362736 CATCCAGGACACCAACATCAG 58.637 52.381 0.00 0.00 0.00 2.90
2982 2997 4.796231 AACTACGCGCCCTGCTCG 62.796 66.667 5.73 0.00 42.66 5.03
2995 3010 3.838271 GCTCGGTCGCCATCCTCA 61.838 66.667 0.00 0.00 0.00 3.86
3228 3243 2.122167 GGAGGACGAGCTGGACGAT 61.122 63.158 1.44 0.00 34.70 3.73
3294 3309 0.670239 TCATGTACAGCCAGCACACG 60.670 55.000 0.33 0.00 0.00 4.49
3366 3381 4.436998 GACCTGCTCGTGGTCGGG 62.437 72.222 0.00 0.00 43.55 5.14
3474 3489 3.920196 ACGTCCGCCGACTTTGGT 61.920 61.111 3.71 0.00 40.70 3.67
3545 3560 2.747855 GCTCTGCCCCGTTTGAGG 60.748 66.667 0.00 0.00 0.00 3.86
3582 3597 8.882415 TTAAATTCCTCCAGTCGTAATCATAC 57.118 34.615 0.00 0.00 0.00 2.39
3583 3598 6.479972 AATTCCTCCAGTCGTAATCATACA 57.520 37.500 0.00 0.00 32.02 2.29
3584 3599 5.515797 TTCCTCCAGTCGTAATCATACAG 57.484 43.478 0.00 0.00 32.02 2.74
3602 3617 8.942338 TCATACAGTATTTAACTACAAGCTGG 57.058 34.615 5.85 0.00 35.76 4.85
3603 3618 8.755028 TCATACAGTATTTAACTACAAGCTGGA 58.245 33.333 0.00 0.00 35.76 3.86
3604 3619 9.035607 CATACAGTATTTAACTACAAGCTGGAG 57.964 37.037 0.00 0.00 35.76 3.86
3605 3620 7.005709 ACAGTATTTAACTACAAGCTGGAGT 57.994 36.000 0.00 0.00 45.16 3.85
3606 3621 8.130671 ACAGTATTTAACTACAAGCTGGAGTA 57.869 34.615 0.00 0.00 41.63 2.59
3607 3622 8.033626 ACAGTATTTAACTACAAGCTGGAGTAC 58.966 37.037 0.00 0.00 41.63 2.73
3648 3675 9.528489 AAATTTGTAATGGTAACCTCATGTAGT 57.472 29.630 0.00 0.00 0.00 2.73
3652 3679 8.136563 TGTAATGGTAACCTCATGTAGTAACA 57.863 34.615 0.00 0.00 40.69 2.41
3654 3681 9.257651 GTAATGGTAACCTCATGTAGTAACATC 57.742 37.037 0.00 0.00 44.70 3.06
3655 3682 7.676683 ATGGTAACCTCATGTAGTAACATCT 57.323 36.000 0.00 0.00 44.70 2.90
3656 3683 7.490657 TGGTAACCTCATGTAGTAACATCTT 57.509 36.000 0.00 0.00 44.70 2.40
3659 3686 5.359194 ACCTCATGTAGTAACATCTTGGG 57.641 43.478 0.00 0.00 44.70 4.12
3660 3687 5.030147 ACCTCATGTAGTAACATCTTGGGA 58.970 41.667 0.00 0.00 44.70 4.37
3661 3688 5.129485 ACCTCATGTAGTAACATCTTGGGAG 59.871 44.000 0.00 0.00 44.70 4.30
3662 3689 5.453903 CCTCATGTAGTAACATCTTGGGAGG 60.454 48.000 7.18 7.18 44.70 4.30
3663 3690 3.906720 TGTAGTAACATCTTGGGAGGC 57.093 47.619 0.00 0.00 0.00 4.70
3664 3691 3.450904 TGTAGTAACATCTTGGGAGGCT 58.549 45.455 0.00 0.00 0.00 4.58
3676 3703 1.343075 TGGGAGGCTTAGGTCCTACTG 60.343 57.143 0.00 0.00 34.86 2.74
3679 3706 3.438225 GGGAGGCTTAGGTCCTACTGTAT 60.438 52.174 0.00 0.00 34.86 2.29
3727 3758 0.899717 ATTCAGGCCGGCACACAATT 60.900 50.000 30.85 2.95 0.00 2.32
3728 3759 1.804396 TTCAGGCCGGCACACAATTG 61.804 55.000 30.85 13.66 0.00 2.32
3729 3760 3.683937 AGGCCGGCACACAATTGC 61.684 61.111 30.85 7.16 42.18 3.56
3730 3761 3.683937 GGCCGGCACACAATTGCT 61.684 61.111 30.85 0.00 42.56 3.91
3731 3762 2.339712 GCCGGCACACAATTGCTT 59.660 55.556 24.80 0.00 42.56 3.91
3732 3763 1.734117 GCCGGCACACAATTGCTTC 60.734 57.895 24.80 0.00 42.56 3.86
3733 3764 1.959085 CCGGCACACAATTGCTTCT 59.041 52.632 5.05 0.00 42.56 2.85
3734 3765 0.314935 CCGGCACACAATTGCTTCTT 59.685 50.000 5.05 0.00 42.56 2.52
3735 3766 1.666888 CCGGCACACAATTGCTTCTTC 60.667 52.381 5.05 0.00 42.56 2.87
3736 3767 1.267806 CGGCACACAATTGCTTCTTCT 59.732 47.619 5.05 0.00 42.56 2.85
3737 3768 2.287788 CGGCACACAATTGCTTCTTCTT 60.288 45.455 5.05 0.00 42.56 2.52
3738 3769 3.311966 GGCACACAATTGCTTCTTCTTC 58.688 45.455 5.05 0.00 42.56 2.87
3739 3770 3.005155 GGCACACAATTGCTTCTTCTTCT 59.995 43.478 5.05 0.00 42.56 2.85
3740 3771 4.500375 GGCACACAATTGCTTCTTCTTCTT 60.500 41.667 5.05 0.00 42.56 2.52
3741 3772 4.678742 GCACACAATTGCTTCTTCTTCTTC 59.321 41.667 5.05 0.00 39.59 2.87
3742 3773 5.506982 GCACACAATTGCTTCTTCTTCTTCT 60.507 40.000 5.05 0.00 39.59 2.85
3743 3774 6.501781 CACACAATTGCTTCTTCTTCTTCTT 58.498 36.000 5.05 0.00 0.00 2.52
3744 3775 6.976925 CACACAATTGCTTCTTCTTCTTCTTT 59.023 34.615 5.05 0.00 0.00 2.52
3745 3776 7.490402 CACACAATTGCTTCTTCTTCTTCTTTT 59.510 33.333 5.05 0.00 0.00 2.27
3746 3777 8.037166 ACACAATTGCTTCTTCTTCTTCTTTTT 58.963 29.630 5.05 0.00 0.00 1.94
3747 3778 8.325997 CACAATTGCTTCTTCTTCTTCTTTTTG 58.674 33.333 5.05 0.00 0.00 2.44
3748 3779 7.493645 ACAATTGCTTCTTCTTCTTCTTTTTGG 59.506 33.333 5.05 0.00 0.00 3.28
3749 3780 4.936891 TGCTTCTTCTTCTTCTTTTTGGC 58.063 39.130 0.00 0.00 0.00 4.52
3750 3781 4.402155 TGCTTCTTCTTCTTCTTTTTGGCA 59.598 37.500 0.00 0.00 0.00 4.92
3751 3782 4.742167 GCTTCTTCTTCTTCTTTTTGGCAC 59.258 41.667 0.00 0.00 0.00 5.01
3752 3783 5.679638 GCTTCTTCTTCTTCTTTTTGGCACA 60.680 40.000 0.00 0.00 0.00 4.57
3765 3796 2.254918 TGGCACAAAATAATGCGACG 57.745 45.000 0.00 0.00 43.02 5.12
3766 3797 1.807142 TGGCACAAAATAATGCGACGA 59.193 42.857 0.00 0.00 43.02 4.20
3767 3798 2.421775 TGGCACAAAATAATGCGACGAT 59.578 40.909 0.00 0.00 43.02 3.73
3768 3799 3.035942 GGCACAAAATAATGCGACGATC 58.964 45.455 0.00 0.00 43.02 3.69
3769 3800 3.035942 GCACAAAATAATGCGACGATCC 58.964 45.455 0.00 0.00 30.97 3.36
3770 3801 3.486708 GCACAAAATAATGCGACGATCCA 60.487 43.478 0.00 0.00 30.97 3.41
3771 3802 4.789481 GCACAAAATAATGCGACGATCCAT 60.789 41.667 0.00 0.00 30.97 3.41
3772 3803 5.273170 CACAAAATAATGCGACGATCCATT 58.727 37.500 0.00 1.53 35.90 3.16
3773 3804 5.743398 CACAAAATAATGCGACGATCCATTT 59.257 36.000 0.00 0.00 33.93 2.32
3774 3805 6.253298 CACAAAATAATGCGACGATCCATTTT 59.747 34.615 0.00 2.22 33.93 1.82
3775 3806 6.811170 ACAAAATAATGCGACGATCCATTTTT 59.189 30.769 0.00 0.00 33.93 1.94
3776 3807 7.009174 ACAAAATAATGCGACGATCCATTTTTC 59.991 33.333 0.00 0.00 33.93 2.29
3777 3808 5.749596 ATAATGCGACGATCCATTTTTCA 57.250 34.783 0.00 0.00 33.93 2.69
3778 3809 4.637483 AATGCGACGATCCATTTTTCAT 57.363 36.364 0.00 0.00 0.00 2.57
3779 3810 3.673746 TGCGACGATCCATTTTTCATC 57.326 42.857 0.00 0.00 0.00 2.92
3780 3811 3.006247 TGCGACGATCCATTTTTCATCA 58.994 40.909 0.00 0.00 0.00 3.07
3781 3812 3.627123 TGCGACGATCCATTTTTCATCAT 59.373 39.130 0.00 0.00 0.00 2.45
3782 3813 4.096231 TGCGACGATCCATTTTTCATCATT 59.904 37.500 0.00 0.00 0.00 2.57
3783 3814 5.295540 TGCGACGATCCATTTTTCATCATTA 59.704 36.000 0.00 0.00 0.00 1.90
3784 3815 6.183360 TGCGACGATCCATTTTTCATCATTAA 60.183 34.615 0.00 0.00 0.00 1.40
3785 3816 6.857964 GCGACGATCCATTTTTCATCATTAAT 59.142 34.615 0.00 0.00 0.00 1.40
3786 3817 7.379529 GCGACGATCCATTTTTCATCATTAATT 59.620 33.333 0.00 0.00 0.00 1.40
3787 3818 9.236691 CGACGATCCATTTTTCATCATTAATTT 57.763 29.630 0.00 0.00 0.00 1.82
3789 3820 9.236691 ACGATCCATTTTTCATCATTAATTTCG 57.763 29.630 0.00 0.00 0.00 3.46
3790 3821 9.449550 CGATCCATTTTTCATCATTAATTTCGA 57.550 29.630 0.00 0.00 0.00 3.71
3799 3830 9.773328 TTTCATCATTAATTTCGATGACAAGAC 57.227 29.630 13.67 0.00 43.85 3.01
3800 3831 8.491331 TCATCATTAATTTCGATGACAAGACA 57.509 30.769 11.14 0.00 40.37 3.41
3801 3832 8.945057 TCATCATTAATTTCGATGACAAGACAA 58.055 29.630 11.14 0.00 40.37 3.18
3802 3833 9.218359 CATCATTAATTTCGATGACAAGACAAG 57.782 33.333 8.02 0.00 39.09 3.16
3803 3834 8.322906 TCATTAATTTCGATGACAAGACAAGT 57.677 30.769 0.00 0.00 0.00 3.16
3804 3835 8.783093 TCATTAATTTCGATGACAAGACAAGTT 58.217 29.630 0.00 0.00 0.00 2.66
3805 3836 9.055248 CATTAATTTCGATGACAAGACAAGTTC 57.945 33.333 0.00 0.00 0.00 3.01
3806 3837 5.613358 ATTTCGATGACAAGACAAGTTCC 57.387 39.130 0.00 0.00 0.00 3.62
3807 3838 3.744238 TCGATGACAAGACAAGTTCCA 57.256 42.857 0.00 0.00 0.00 3.53
3808 3839 4.066646 TCGATGACAAGACAAGTTCCAA 57.933 40.909 0.00 0.00 0.00 3.53
3809 3840 4.641396 TCGATGACAAGACAAGTTCCAAT 58.359 39.130 0.00 0.00 0.00 3.16
3810 3841 5.063204 TCGATGACAAGACAAGTTCCAATT 58.937 37.500 0.00 0.00 0.00 2.32
3811 3842 5.530915 TCGATGACAAGACAAGTTCCAATTT 59.469 36.000 0.00 0.00 0.00 1.82
3812 3843 5.626543 CGATGACAAGACAAGTTCCAATTTG 59.373 40.000 0.00 0.00 0.00 2.32
3813 3844 5.913137 TGACAAGACAAGTTCCAATTTGT 57.087 34.783 0.18 0.18 40.85 2.83
3814 3845 5.649557 TGACAAGACAAGTTCCAATTTGTG 58.350 37.500 5.04 0.00 38.70 3.33
3815 3846 4.432712 ACAAGACAAGTTCCAATTTGTGC 58.567 39.130 5.04 0.00 38.70 4.57
3816 3847 4.160252 ACAAGACAAGTTCCAATTTGTGCT 59.840 37.500 5.04 1.03 38.70 4.40
3817 3848 5.111293 CAAGACAAGTTCCAATTTGTGCTT 58.889 37.500 5.04 5.99 38.70 3.91
3818 3849 6.127479 ACAAGACAAGTTCCAATTTGTGCTTA 60.127 34.615 5.04 0.00 38.70 3.09
3819 3850 6.655078 AGACAAGTTCCAATTTGTGCTTAT 57.345 33.333 5.04 0.00 38.70 1.73
3820 3851 6.449698 AGACAAGTTCCAATTTGTGCTTATG 58.550 36.000 5.04 0.00 38.70 1.90
3821 3852 6.265196 AGACAAGTTCCAATTTGTGCTTATGA 59.735 34.615 5.04 0.00 38.70 2.15
3822 3853 6.996509 ACAAGTTCCAATTTGTGCTTATGAT 58.003 32.000 0.00 0.00 37.44 2.45
3823 3854 7.092716 ACAAGTTCCAATTTGTGCTTATGATC 58.907 34.615 0.00 0.00 37.44 2.92
3824 3855 7.039504 ACAAGTTCCAATTTGTGCTTATGATCT 60.040 33.333 0.00 0.00 37.44 2.75
3825 3856 6.860080 AGTTCCAATTTGTGCTTATGATCTG 58.140 36.000 0.00 0.00 0.00 2.90
3826 3857 5.252969 TCCAATTTGTGCTTATGATCTGC 57.747 39.130 0.00 0.00 0.00 4.26
3827 3858 4.039703 CCAATTTGTGCTTATGATCTGCG 58.960 43.478 0.00 0.00 0.00 5.18
3828 3859 4.201940 CCAATTTGTGCTTATGATCTGCGA 60.202 41.667 0.00 0.00 0.00 5.10
3829 3860 4.542662 ATTTGTGCTTATGATCTGCGAC 57.457 40.909 0.00 0.00 0.00 5.19
3830 3861 2.967599 TGTGCTTATGATCTGCGACT 57.032 45.000 0.00 0.00 0.00 4.18
3831 3862 2.814269 TGTGCTTATGATCTGCGACTC 58.186 47.619 0.00 0.00 0.00 3.36
3832 3863 2.428530 TGTGCTTATGATCTGCGACTCT 59.571 45.455 0.00 0.00 0.00 3.24
3833 3864 3.049206 GTGCTTATGATCTGCGACTCTC 58.951 50.000 0.00 0.00 0.00 3.20
3834 3865 2.689983 TGCTTATGATCTGCGACTCTCA 59.310 45.455 0.00 0.00 0.00 3.27
3835 3866 3.131046 TGCTTATGATCTGCGACTCTCAA 59.869 43.478 0.00 0.00 0.00 3.02
3836 3867 3.489047 GCTTATGATCTGCGACTCTCAAC 59.511 47.826 0.00 0.00 0.00 3.18
3837 3868 4.676546 CTTATGATCTGCGACTCTCAACA 58.323 43.478 0.00 0.00 0.00 3.33
3838 3869 2.354109 TGATCTGCGACTCTCAACAC 57.646 50.000 0.00 0.00 0.00 3.32
3839 3870 1.613437 TGATCTGCGACTCTCAACACA 59.387 47.619 0.00 0.00 0.00 3.72
3840 3871 2.257894 GATCTGCGACTCTCAACACAG 58.742 52.381 0.00 0.00 0.00 3.66
3860 3891 6.425114 ACACAGACAATACACAAACTGAGATC 59.575 38.462 0.00 0.00 0.00 2.75
3894 3925 4.844655 ACTACTCAACAGACCTAAACCCAT 59.155 41.667 0.00 0.00 0.00 4.00
3899 3930 4.104102 TCAACAGACCTAAACCCATGTTCT 59.896 41.667 0.00 0.00 32.15 3.01
3903 3934 5.072600 ACAGACCTAAACCCATGTTCTAACA 59.927 40.000 0.00 0.00 44.06 2.41
3907 3938 5.768164 ACCTAAACCCATGTTCTAACACTTG 59.232 40.000 0.00 0.00 42.51 3.16
3966 3997 7.810658 ACATTATTGATCATCGAATAACAGCC 58.189 34.615 0.00 0.00 29.13 4.85
3976 4007 3.943381 TCGAATAACAGCCGAGAAGTCTA 59.057 43.478 0.00 0.00 0.00 2.59
4032 4063 2.222027 CCGTTTCTCCAACTGAAGCTT 58.778 47.619 0.00 0.00 32.53 3.74
4073 4105 1.574702 GCCCGGCAGTAATATTCGGC 61.575 60.000 3.91 4.78 39.41 5.54
4074 4106 0.250124 CCCGGCAGTAATATTCGGCA 60.250 55.000 0.00 0.00 39.41 5.69
4105 4137 4.768448 TGAATGACATCAACTCCAGCATTT 59.232 37.500 0.00 0.00 0.00 2.32
4162 4194 1.380302 GCCCTGATGCCCCGATAAT 59.620 57.895 0.00 0.00 0.00 1.28
4173 4205 3.687212 TGCCCCGATAATATTGCATAACG 59.313 43.478 0.00 0.00 0.00 3.18
4177 4209 5.175859 CCCGATAATATTGCATAACGACCT 58.824 41.667 0.00 0.00 0.00 3.85
4182 4214 8.162880 CGATAATATTGCATAACGACCTTCTTC 58.837 37.037 0.00 0.00 0.00 2.87
4284 4316 8.118976 AGAACAGATGTGATGAAAACAATCAT 57.881 30.769 0.00 0.00 42.62 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.720046 TGCTGGTTTTCATGTACCAAGTA 58.280 39.130 14.75 8.43 43.46 2.24
1 2 3.561143 TGCTGGTTTTCATGTACCAAGT 58.439 40.909 14.75 0.00 43.46 3.16
2 3 3.820467 TCTGCTGGTTTTCATGTACCAAG 59.180 43.478 14.75 11.45 43.46 3.61
3 4 3.820467 CTCTGCTGGTTTTCATGTACCAA 59.180 43.478 14.75 4.52 43.46 3.67
4 5 3.072330 TCTCTGCTGGTTTTCATGTACCA 59.928 43.478 13.68 13.68 41.97 3.25
5 6 3.674997 TCTCTGCTGGTTTTCATGTACC 58.325 45.455 7.25 7.25 34.93 3.34
6 7 4.319177 ACTCTCTGCTGGTTTTCATGTAC 58.681 43.478 0.00 0.00 0.00 2.90
7 8 4.284490 AGACTCTCTGCTGGTTTTCATGTA 59.716 41.667 0.00 0.00 0.00 2.29
8 9 3.072184 AGACTCTCTGCTGGTTTTCATGT 59.928 43.478 0.00 0.00 0.00 3.21
9 10 3.436015 CAGACTCTCTGCTGGTTTTCATG 59.564 47.826 0.00 0.00 37.72 3.07
10 11 3.558746 CCAGACTCTCTGCTGGTTTTCAT 60.559 47.826 0.00 0.00 45.21 2.57
11 12 2.224378 CCAGACTCTCTGCTGGTTTTCA 60.224 50.000 0.00 0.00 45.21 2.69
12 13 2.421619 CCAGACTCTCTGCTGGTTTTC 58.578 52.381 0.00 0.00 45.21 2.29
13 14 2.557920 CCAGACTCTCTGCTGGTTTT 57.442 50.000 0.00 0.00 45.21 2.43
18 19 3.307445 CCCCCAGACTCTCTGCTG 58.693 66.667 0.00 0.00 42.98 4.41
32 33 4.100498 TCAGATACAAACTATTCGTCCCCC 59.900 45.833 0.00 0.00 0.00 5.40
33 34 5.272283 TCAGATACAAACTATTCGTCCCC 57.728 43.478 0.00 0.00 0.00 4.81
34 35 6.103997 TGTTCAGATACAAACTATTCGTCCC 58.896 40.000 0.00 0.00 0.00 4.46
35 36 7.772332 ATGTTCAGATACAAACTATTCGTCC 57.228 36.000 0.00 0.00 0.00 4.79
43 44 9.442047 CTCCTCTTTAATGTTCAGATACAAACT 57.558 33.333 0.00 0.00 0.00 2.66
44 45 8.178313 GCTCCTCTTTAATGTTCAGATACAAAC 58.822 37.037 0.00 0.00 0.00 2.93
45 46 7.882791 TGCTCCTCTTTAATGTTCAGATACAAA 59.117 33.333 0.00 0.00 0.00 2.83
46 47 7.334421 GTGCTCCTCTTTAATGTTCAGATACAA 59.666 37.037 0.00 0.00 0.00 2.41
47 48 6.818644 GTGCTCCTCTTTAATGTTCAGATACA 59.181 38.462 0.00 0.00 0.00 2.29
48 49 6.019479 CGTGCTCCTCTTTAATGTTCAGATAC 60.019 42.308 0.00 0.00 0.00 2.24
49 50 6.042777 CGTGCTCCTCTTTAATGTTCAGATA 58.957 40.000 0.00 0.00 0.00 1.98
50 51 4.872691 CGTGCTCCTCTTTAATGTTCAGAT 59.127 41.667 0.00 0.00 0.00 2.90
51 52 4.021456 TCGTGCTCCTCTTTAATGTTCAGA 60.021 41.667 0.00 0.00 0.00 3.27
52 53 4.092091 GTCGTGCTCCTCTTTAATGTTCAG 59.908 45.833 0.00 0.00 0.00 3.02
53 54 3.994392 GTCGTGCTCCTCTTTAATGTTCA 59.006 43.478 0.00 0.00 0.00 3.18
54 55 3.371285 GGTCGTGCTCCTCTTTAATGTTC 59.629 47.826 0.00 0.00 0.00 3.18
55 56 3.008049 AGGTCGTGCTCCTCTTTAATGTT 59.992 43.478 0.00 0.00 0.00 2.71
56 57 2.567615 AGGTCGTGCTCCTCTTTAATGT 59.432 45.455 0.00 0.00 0.00 2.71
57 58 3.190874 GAGGTCGTGCTCCTCTTTAATG 58.809 50.000 4.91 0.00 45.56 1.90
58 59 2.159226 CGAGGTCGTGCTCCTCTTTAAT 60.159 50.000 9.74 0.00 46.49 1.40
59 60 1.201647 CGAGGTCGTGCTCCTCTTTAA 59.798 52.381 9.74 0.00 46.49 1.52
60 61 0.809385 CGAGGTCGTGCTCCTCTTTA 59.191 55.000 9.74 0.00 46.49 1.85
61 62 1.587054 CGAGGTCGTGCTCCTCTTT 59.413 57.895 9.74 0.00 46.49 2.52
62 63 3.279183 CGAGGTCGTGCTCCTCTT 58.721 61.111 9.74 0.00 46.49 2.85
72 73 2.080286 AATCAGTTCCAACGAGGTCG 57.920 50.000 0.00 0.00 46.33 4.79
73 74 3.139077 ACAAATCAGTTCCAACGAGGTC 58.861 45.455 0.00 0.00 39.02 3.85
74 75 3.208747 ACAAATCAGTTCCAACGAGGT 57.791 42.857 0.00 0.00 39.02 3.85
75 76 3.315191 ACAACAAATCAGTTCCAACGAGG 59.685 43.478 0.00 0.00 39.47 4.63
76 77 4.201910 ACACAACAAATCAGTTCCAACGAG 60.202 41.667 0.00 0.00 0.00 4.18
77 78 3.692101 ACACAACAAATCAGTTCCAACGA 59.308 39.130 0.00 0.00 0.00 3.85
78 79 3.790820 CACACAACAAATCAGTTCCAACG 59.209 43.478 0.00 0.00 0.00 4.10
79 80 4.743493 ACACACAACAAATCAGTTCCAAC 58.257 39.130 0.00 0.00 0.00 3.77
80 81 5.398603 AACACACAACAAATCAGTTCCAA 57.601 34.783 0.00 0.00 0.00 3.53
81 82 4.992688 GAACACACAACAAATCAGTTCCA 58.007 39.130 0.00 0.00 0.00 3.53
82 83 4.359706 GGAACACACAACAAATCAGTTCC 58.640 43.478 0.00 0.00 44.37 3.62
83 84 4.992688 TGGAACACACAACAAATCAGTTC 58.007 39.130 0.00 0.00 34.67 3.01
100 101 3.120165 GCGAAGAACTCCTCAAATGGAAC 60.120 47.826 0.00 0.00 35.43 3.62
101 102 3.074412 GCGAAGAACTCCTCAAATGGAA 58.926 45.455 0.00 0.00 35.43 3.53
102 103 2.699954 GCGAAGAACTCCTCAAATGGA 58.300 47.619 0.00 0.00 34.52 3.41
103 104 1.394917 CGCGAAGAACTCCTCAAATGG 59.605 52.381 0.00 0.00 0.00 3.16
104 105 2.069273 ACGCGAAGAACTCCTCAAATG 58.931 47.619 15.93 0.00 0.00 2.32
105 106 2.457366 ACGCGAAGAACTCCTCAAAT 57.543 45.000 15.93 0.00 0.00 2.32
106 107 2.234300 AACGCGAAGAACTCCTCAAA 57.766 45.000 15.93 0.00 0.00 2.69
107 108 2.234300 AAACGCGAAGAACTCCTCAA 57.766 45.000 15.93 0.00 0.00 3.02
108 109 2.234300 AAAACGCGAAGAACTCCTCA 57.766 45.000 15.93 0.00 0.00 3.86
109 110 2.542595 TGAAAAACGCGAAGAACTCCTC 59.457 45.455 15.93 0.00 0.00 3.71
110 111 2.557317 TGAAAAACGCGAAGAACTCCT 58.443 42.857 15.93 0.00 0.00 3.69
111 112 3.328237 TTGAAAAACGCGAAGAACTCC 57.672 42.857 15.93 0.00 0.00 3.85
112 113 4.523813 TGATTGAAAAACGCGAAGAACTC 58.476 39.130 15.93 1.70 0.00 3.01
113 114 4.545823 TGATTGAAAAACGCGAAGAACT 57.454 36.364 15.93 0.00 0.00 3.01
114 115 5.613964 TTTGATTGAAAAACGCGAAGAAC 57.386 34.783 15.93 1.39 0.00 3.01
115 116 5.231147 CCTTTTGATTGAAAAACGCGAAGAA 59.769 36.000 15.93 0.00 33.04 2.52
116 117 4.737765 CCTTTTGATTGAAAAACGCGAAGA 59.262 37.500 15.93 0.00 33.04 2.87
117 118 4.606012 GCCTTTTGATTGAAAAACGCGAAG 60.606 41.667 15.93 0.00 33.04 3.79
118 119 3.244111 GCCTTTTGATTGAAAAACGCGAA 59.756 39.130 15.93 0.00 33.04 4.70
119 120 2.792116 GCCTTTTGATTGAAAAACGCGA 59.208 40.909 15.93 0.00 33.04 5.87
120 121 2.096958 GGCCTTTTGATTGAAAAACGCG 60.097 45.455 3.53 3.53 34.12 6.01
121 122 2.223144 GGGCCTTTTGATTGAAAAACGC 59.777 45.455 0.84 0.00 33.04 4.84
122 123 3.727726 AGGGCCTTTTGATTGAAAAACG 58.272 40.909 0.00 0.00 33.04 3.60
123 124 3.740832 CGAGGGCCTTTTGATTGAAAAAC 59.259 43.478 7.89 0.00 33.04 2.43
124 125 3.639094 TCGAGGGCCTTTTGATTGAAAAA 59.361 39.130 7.89 0.00 33.04 1.94
125 126 3.226777 TCGAGGGCCTTTTGATTGAAAA 58.773 40.909 7.89 0.00 32.44 2.29
126 127 2.870175 TCGAGGGCCTTTTGATTGAAA 58.130 42.857 7.89 0.00 0.00 2.69
127 128 2.577606 TCGAGGGCCTTTTGATTGAA 57.422 45.000 7.89 0.00 0.00 2.69
128 129 2.806945 ATCGAGGGCCTTTTGATTGA 57.193 45.000 7.89 0.00 0.00 2.57
129 130 4.981806 TTTATCGAGGGCCTTTTGATTG 57.018 40.909 18.18 0.00 0.00 2.67
130 131 7.489160 GTTAATTTATCGAGGGCCTTTTGATT 58.511 34.615 18.18 11.93 0.00 2.57
131 132 6.238648 CGTTAATTTATCGAGGGCCTTTTGAT 60.239 38.462 7.89 14.30 0.00 2.57
132 133 5.065474 CGTTAATTTATCGAGGGCCTTTTGA 59.935 40.000 7.89 7.05 0.00 2.69
133 134 5.270853 CGTTAATTTATCGAGGGCCTTTTG 58.729 41.667 7.89 0.47 0.00 2.44
134 135 4.337274 CCGTTAATTTATCGAGGGCCTTTT 59.663 41.667 7.89 0.00 0.00 2.27
135 136 3.881089 CCGTTAATTTATCGAGGGCCTTT 59.119 43.478 7.89 0.00 0.00 3.11
136 137 3.118149 ACCGTTAATTTATCGAGGGCCTT 60.118 43.478 7.89 0.00 0.00 4.35
137 138 2.436911 ACCGTTAATTTATCGAGGGCCT 59.563 45.455 5.25 5.25 0.00 5.19
138 139 2.804527 GACCGTTAATTTATCGAGGGCC 59.195 50.000 0.00 0.00 0.00 5.80
139 140 3.725490 AGACCGTTAATTTATCGAGGGC 58.275 45.455 8.16 0.00 0.00 5.19
140 141 6.673154 AAAAGACCGTTAATTTATCGAGGG 57.327 37.500 8.16 0.00 0.00 4.30
141 142 8.416485 AGTAAAAGACCGTTAATTTATCGAGG 57.584 34.615 8.16 0.00 0.00 4.63
145 146 9.911980 GCAGTAGTAAAAGACCGTTAATTTATC 57.088 33.333 0.00 0.00 0.00 1.75
146 147 8.886719 GGCAGTAGTAAAAGACCGTTAATTTAT 58.113 33.333 0.00 0.00 0.00 1.40
147 148 8.096414 AGGCAGTAGTAAAAGACCGTTAATTTA 58.904 33.333 0.00 0.00 0.00 1.40
148 149 6.938596 AGGCAGTAGTAAAAGACCGTTAATTT 59.061 34.615 0.00 0.00 0.00 1.82
149 150 6.370718 CAGGCAGTAGTAAAAGACCGTTAATT 59.629 38.462 0.00 0.00 0.00 1.40
150 151 5.873164 CAGGCAGTAGTAAAAGACCGTTAAT 59.127 40.000 0.00 0.00 0.00 1.40
151 152 5.221501 ACAGGCAGTAGTAAAAGACCGTTAA 60.222 40.000 0.00 0.00 0.00 2.01
152 153 4.281688 ACAGGCAGTAGTAAAAGACCGTTA 59.718 41.667 0.00 0.00 0.00 3.18
153 154 3.070590 ACAGGCAGTAGTAAAAGACCGTT 59.929 43.478 0.00 0.00 0.00 4.44
154 155 2.631545 ACAGGCAGTAGTAAAAGACCGT 59.368 45.455 0.00 0.00 0.00 4.83
155 156 3.314541 ACAGGCAGTAGTAAAAGACCG 57.685 47.619 0.00 0.00 0.00 4.79
156 157 5.791666 ACTTACAGGCAGTAGTAAAAGACC 58.208 41.667 0.00 0.00 33.43 3.85
157 158 7.600960 AGTACTTACAGGCAGTAGTAAAAGAC 58.399 38.462 0.00 0.00 33.43 3.01
158 159 7.771927 AGTACTTACAGGCAGTAGTAAAAGA 57.228 36.000 0.00 0.00 33.43 2.52
162 163 9.471702 AGAAATAGTACTTACAGGCAGTAGTAA 57.528 33.333 0.00 0.00 36.61 2.24
163 164 8.900781 CAGAAATAGTACTTACAGGCAGTAGTA 58.099 37.037 0.00 1.21 37.16 1.82
164 165 7.396623 ACAGAAATAGTACTTACAGGCAGTAGT 59.603 37.037 0.00 0.00 35.12 2.73
165 166 7.773149 ACAGAAATAGTACTTACAGGCAGTAG 58.227 38.462 0.00 0.00 33.43 2.57
166 167 7.395206 TGACAGAAATAGTACTTACAGGCAGTA 59.605 37.037 0.00 0.00 0.00 2.74
167 168 6.210784 TGACAGAAATAGTACTTACAGGCAGT 59.789 38.462 0.00 0.00 0.00 4.40
168 169 6.631016 TGACAGAAATAGTACTTACAGGCAG 58.369 40.000 0.00 0.00 0.00 4.85
169 170 6.599356 TGACAGAAATAGTACTTACAGGCA 57.401 37.500 0.00 0.00 0.00 4.75
170 171 9.595823 TTAATGACAGAAATAGTACTTACAGGC 57.404 33.333 0.00 0.00 0.00 4.85
173 174 9.595823 GCCTTAATGACAGAAATAGTACTTACA 57.404 33.333 0.00 0.00 0.00 2.41
174 175 9.595823 TGCCTTAATGACAGAAATAGTACTTAC 57.404 33.333 0.00 0.00 0.00 2.34
175 176 9.595823 GTGCCTTAATGACAGAAATAGTACTTA 57.404 33.333 0.00 0.00 0.00 2.24
176 177 7.277981 CGTGCCTTAATGACAGAAATAGTACTT 59.722 37.037 0.00 0.00 0.00 2.24
177 178 6.757010 CGTGCCTTAATGACAGAAATAGTACT 59.243 38.462 0.00 0.00 0.00 2.73
178 179 6.755141 TCGTGCCTTAATGACAGAAATAGTAC 59.245 38.462 0.00 0.00 0.00 2.73
179 180 6.869695 TCGTGCCTTAATGACAGAAATAGTA 58.130 36.000 0.00 0.00 0.00 1.82
180 181 5.730550 TCGTGCCTTAATGACAGAAATAGT 58.269 37.500 0.00 0.00 0.00 2.12
181 182 6.479990 TCATCGTGCCTTAATGACAGAAATAG 59.520 38.462 0.00 0.00 0.00 1.73
182 183 6.257849 GTCATCGTGCCTTAATGACAGAAATA 59.742 38.462 9.25 0.00 45.48 1.40
183 184 5.065218 GTCATCGTGCCTTAATGACAGAAAT 59.935 40.000 9.25 0.00 45.48 2.17
184 185 4.391830 GTCATCGTGCCTTAATGACAGAAA 59.608 41.667 9.25 0.00 45.48 2.52
185 186 3.932710 GTCATCGTGCCTTAATGACAGAA 59.067 43.478 9.25 0.00 45.48 3.02
186 187 3.521560 GTCATCGTGCCTTAATGACAGA 58.478 45.455 9.25 0.00 45.48 3.41
187 188 3.933155 GTCATCGTGCCTTAATGACAG 57.067 47.619 9.25 0.00 45.48 3.51
189 190 3.309954 GGAAGTCATCGTGCCTTAATGAC 59.690 47.826 6.61 6.61 46.16 3.06
190 191 3.531538 GGAAGTCATCGTGCCTTAATGA 58.468 45.455 0.00 0.00 0.00 2.57
191 192 2.614057 GGGAAGTCATCGTGCCTTAATG 59.386 50.000 0.00 0.00 31.76 1.90
192 193 2.741878 CGGGAAGTCATCGTGCCTTAAT 60.742 50.000 0.00 0.00 32.21 1.40
193 194 1.404986 CGGGAAGTCATCGTGCCTTAA 60.405 52.381 0.00 0.00 32.21 1.85
194 195 0.174845 CGGGAAGTCATCGTGCCTTA 59.825 55.000 0.00 0.00 32.21 2.69
195 196 1.079127 CGGGAAGTCATCGTGCCTT 60.079 57.895 0.00 0.00 32.21 4.35
196 197 1.827399 AACGGGAAGTCATCGTGCCT 61.827 55.000 0.00 0.00 37.20 4.75
197 198 0.953960 AAACGGGAAGTCATCGTGCC 60.954 55.000 0.00 0.00 37.20 5.01
198 199 0.165944 CAAACGGGAAGTCATCGTGC 59.834 55.000 0.00 0.00 37.20 5.34
199 200 1.459592 GACAAACGGGAAGTCATCGTG 59.540 52.381 0.00 0.00 37.20 4.35
200 201 1.343465 AGACAAACGGGAAGTCATCGT 59.657 47.619 0.00 0.00 38.89 3.73
201 202 2.080286 AGACAAACGGGAAGTCATCG 57.920 50.000 0.00 0.00 34.80 3.84
202 203 4.189639 AGTAGACAAACGGGAAGTCATC 57.810 45.455 0.00 0.00 34.80 2.92
203 204 4.525487 TGTAGTAGACAAACGGGAAGTCAT 59.475 41.667 0.00 0.00 34.15 3.06
204 205 3.890756 TGTAGTAGACAAACGGGAAGTCA 59.109 43.478 0.00 0.00 34.15 3.41
205 206 4.510038 TGTAGTAGACAAACGGGAAGTC 57.490 45.455 0.00 0.00 34.15 3.01
206 207 4.942761 TTGTAGTAGACAAACGGGAAGT 57.057 40.909 0.00 0.00 45.23 3.01
216 217 5.640357 CGGGCAAACTTTATTGTAGTAGACA 59.360 40.000 0.00 0.00 35.78 3.41
217 218 5.064325 CCGGGCAAACTTTATTGTAGTAGAC 59.936 44.000 0.00 0.00 32.80 2.59
218 219 5.180271 CCGGGCAAACTTTATTGTAGTAGA 58.820 41.667 0.00 0.00 32.80 2.59
219 220 4.201881 GCCGGGCAAACTTTATTGTAGTAG 60.202 45.833 15.62 0.00 32.80 2.57
220 221 3.690628 GCCGGGCAAACTTTATTGTAGTA 59.309 43.478 15.62 0.00 32.80 1.82
221 222 2.490509 GCCGGGCAAACTTTATTGTAGT 59.509 45.455 15.62 0.00 32.80 2.73
222 223 2.752903 AGCCGGGCAAACTTTATTGTAG 59.247 45.455 23.09 0.00 32.80 2.74
223 224 2.750712 GAGCCGGGCAAACTTTATTGTA 59.249 45.455 23.09 0.00 32.80 2.41
224 225 1.544246 GAGCCGGGCAAACTTTATTGT 59.456 47.619 23.09 0.00 32.80 2.71
225 226 1.135112 GGAGCCGGGCAAACTTTATTG 60.135 52.381 23.09 0.00 0.00 1.90
226 227 1.182667 GGAGCCGGGCAAACTTTATT 58.817 50.000 23.09 0.00 0.00 1.40
227 228 1.029947 CGGAGCCGGGCAAACTTTAT 61.030 55.000 23.09 0.00 35.56 1.40
228 229 1.673009 CGGAGCCGGGCAAACTTTA 60.673 57.895 23.09 0.00 35.56 1.85
229 230 2.983592 CGGAGCCGGGCAAACTTT 60.984 61.111 23.09 0.00 35.56 2.66
239 240 2.565645 CCCTCTATCACCGGAGCCG 61.566 68.421 9.46 1.06 39.44 5.52
240 241 2.210711 CCCCTCTATCACCGGAGCC 61.211 68.421 9.46 0.00 0.00 4.70
241 242 2.873525 GCCCCTCTATCACCGGAGC 61.874 68.421 9.46 0.00 0.00 4.70
242 243 2.565645 CGCCCCTCTATCACCGGAG 61.566 68.421 9.46 0.00 0.00 4.63
243 244 2.367586 ATCGCCCCTCTATCACCGGA 62.368 60.000 9.46 0.00 0.00 5.14
244 245 1.908793 ATCGCCCCTCTATCACCGG 60.909 63.158 0.00 0.00 0.00 5.28
245 246 1.179174 TCATCGCCCCTCTATCACCG 61.179 60.000 0.00 0.00 0.00 4.94
246 247 0.318762 GTCATCGCCCCTCTATCACC 59.681 60.000 0.00 0.00 0.00 4.02
247 248 0.039074 CGTCATCGCCCCTCTATCAC 60.039 60.000 0.00 0.00 0.00 3.06
248 249 1.179174 CCGTCATCGCCCCTCTATCA 61.179 60.000 0.00 0.00 35.54 2.15
249 250 1.587054 CCGTCATCGCCCCTCTATC 59.413 63.158 0.00 0.00 35.54 2.08
250 251 2.574955 GCCGTCATCGCCCCTCTAT 61.575 63.158 0.00 0.00 35.54 1.98
251 252 3.224324 GCCGTCATCGCCCCTCTA 61.224 66.667 0.00 0.00 35.54 2.43
256 257 4.891727 ATGTCGCCGTCATCGCCC 62.892 66.667 0.00 0.00 35.54 6.13
257 258 3.630148 CATGTCGCCGTCATCGCC 61.630 66.667 0.00 0.00 35.54 5.54
258 259 1.966493 AAACATGTCGCCGTCATCGC 61.966 55.000 0.00 0.00 35.54 4.58
259 260 0.442310 AAAACATGTCGCCGTCATCG 59.558 50.000 0.00 0.00 0.00 3.84
260 261 1.526986 CGAAAACATGTCGCCGTCATC 60.527 52.381 0.00 0.00 0.00 2.92
261 262 0.442310 CGAAAACATGTCGCCGTCAT 59.558 50.000 0.00 0.00 0.00 3.06
262 263 1.561717 CCGAAAACATGTCGCCGTCA 61.562 55.000 0.00 0.00 37.18 4.35
263 264 1.131826 CCGAAAACATGTCGCCGTC 59.868 57.895 0.00 0.00 37.18 4.79
264 265 2.961669 GCCGAAAACATGTCGCCGT 61.962 57.895 0.00 0.00 37.18 5.68
265 266 2.202298 GCCGAAAACATGTCGCCG 60.202 61.111 0.00 2.71 37.18 6.46
266 267 1.134694 GAGCCGAAAACATGTCGCC 59.865 57.895 0.00 0.00 37.18 5.54
267 268 1.225745 CGAGCCGAAAACATGTCGC 60.226 57.895 0.00 0.00 37.18 5.19
268 269 1.225745 GCGAGCCGAAAACATGTCG 60.226 57.895 0.00 0.00 38.24 4.35
269 270 0.517316 AAGCGAGCCGAAAACATGTC 59.483 50.000 0.00 0.00 0.00 3.06
270 271 0.517316 GAAGCGAGCCGAAAACATGT 59.483 50.000 0.00 0.00 0.00 3.21
271 272 0.516877 TGAAGCGAGCCGAAAACATG 59.483 50.000 0.00 0.00 0.00 3.21
272 273 0.798776 CTGAAGCGAGCCGAAAACAT 59.201 50.000 0.00 0.00 0.00 2.71
273 274 0.531974 ACTGAAGCGAGCCGAAAACA 60.532 50.000 0.00 0.00 0.00 2.83
274 275 0.110644 CACTGAAGCGAGCCGAAAAC 60.111 55.000 0.00 0.00 0.00 2.43
275 276 0.249699 TCACTGAAGCGAGCCGAAAA 60.250 50.000 0.00 0.00 0.00 2.29
276 277 0.037326 ATCACTGAAGCGAGCCGAAA 60.037 50.000 0.00 0.00 0.00 3.46
277 278 0.037326 AATCACTGAAGCGAGCCGAA 60.037 50.000 0.00 0.00 0.00 4.30
278 279 0.815095 TAATCACTGAAGCGAGCCGA 59.185 50.000 0.00 0.00 0.00 5.54
279 280 1.858091 ATAATCACTGAAGCGAGCCG 58.142 50.000 0.00 0.00 0.00 5.52
280 281 3.983741 ACTATAATCACTGAAGCGAGCC 58.016 45.455 0.00 0.00 0.00 4.70
281 282 3.666334 CGACTATAATCACTGAAGCGAGC 59.334 47.826 0.00 0.00 0.00 5.03
282 283 4.849883 ACGACTATAATCACTGAAGCGAG 58.150 43.478 0.00 0.00 0.00 5.03
283 284 4.552184 CGACGACTATAATCACTGAAGCGA 60.552 45.833 0.00 0.00 0.00 4.93
284 285 3.659899 CGACGACTATAATCACTGAAGCG 59.340 47.826 0.00 0.00 0.00 4.68
285 286 4.845387 TCGACGACTATAATCACTGAAGC 58.155 43.478 0.00 0.00 0.00 3.86
286 287 8.019769 TCTATCGACGACTATAATCACTGAAG 57.980 38.462 0.00 0.00 0.00 3.02
287 288 7.958053 TCTATCGACGACTATAATCACTGAA 57.042 36.000 0.00 0.00 0.00 3.02
288 289 7.064728 CCATCTATCGACGACTATAATCACTGA 59.935 40.741 0.00 0.00 0.00 3.41
289 290 7.148390 ACCATCTATCGACGACTATAATCACTG 60.148 40.741 0.00 0.00 0.00 3.66
290 291 6.879993 ACCATCTATCGACGACTATAATCACT 59.120 38.462 0.00 0.00 0.00 3.41
291 292 7.064847 AGACCATCTATCGACGACTATAATCAC 59.935 40.741 0.00 0.00 0.00 3.06
292 293 7.104290 AGACCATCTATCGACGACTATAATCA 58.896 38.462 0.00 0.00 0.00 2.57
293 294 7.542534 AGACCATCTATCGACGACTATAATC 57.457 40.000 0.00 0.00 0.00 1.75
294 295 9.047371 CATAGACCATCTATCGACGACTATAAT 57.953 37.037 0.00 0.00 37.58 1.28
295 296 8.255905 TCATAGACCATCTATCGACGACTATAA 58.744 37.037 0.00 0.00 37.58 0.98
296 297 7.779073 TCATAGACCATCTATCGACGACTATA 58.221 38.462 0.00 0.00 37.58 1.31
297 298 6.641474 TCATAGACCATCTATCGACGACTAT 58.359 40.000 0.00 0.00 37.58 2.12
298 299 6.034161 TCATAGACCATCTATCGACGACTA 57.966 41.667 0.00 0.00 37.58 2.59
299 300 4.895961 TCATAGACCATCTATCGACGACT 58.104 43.478 0.00 0.00 37.58 4.18
300 301 4.691685 ACTCATAGACCATCTATCGACGAC 59.308 45.833 0.00 0.00 37.58 4.34
301 302 4.691216 CACTCATAGACCATCTATCGACGA 59.309 45.833 0.00 0.00 37.58 4.20
302 303 4.452795 ACACTCATAGACCATCTATCGACG 59.547 45.833 0.00 0.00 37.58 5.12
303 304 5.335269 CCACACTCATAGACCATCTATCGAC 60.335 48.000 0.00 0.00 37.58 4.20
304 305 4.762251 CCACACTCATAGACCATCTATCGA 59.238 45.833 0.00 0.00 37.58 3.59
305 306 4.762251 TCCACACTCATAGACCATCTATCG 59.238 45.833 0.00 0.00 37.58 2.92
306 307 6.210385 ACATCCACACTCATAGACCATCTATC 59.790 42.308 0.00 0.00 37.58 2.08
307 308 6.080682 ACATCCACACTCATAGACCATCTAT 58.919 40.000 0.00 0.00 40.13 1.98
308 309 5.458595 ACATCCACACTCATAGACCATCTA 58.541 41.667 0.00 0.00 32.87 1.98
309 310 4.293494 ACATCCACACTCATAGACCATCT 58.707 43.478 0.00 0.00 0.00 2.90
310 311 4.679373 ACATCCACACTCATAGACCATC 57.321 45.455 0.00 0.00 0.00 3.51
311 312 6.753913 ATTACATCCACACTCATAGACCAT 57.246 37.500 0.00 0.00 0.00 3.55
312 313 6.560003 AATTACATCCACACTCATAGACCA 57.440 37.500 0.00 0.00 0.00 4.02
313 314 7.865706 AAAATTACATCCACACTCATAGACC 57.134 36.000 0.00 0.00 0.00 3.85
321 322 9.528489 ACCATAAGTAAAAATTACATCCACACT 57.472 29.630 3.37 0.00 0.00 3.55
322 323 9.567848 CACCATAAGTAAAAATTACATCCACAC 57.432 33.333 3.37 0.00 0.00 3.82
323 324 9.303116 ACACCATAAGTAAAAATTACATCCACA 57.697 29.630 3.37 0.00 0.00 4.17
336 337 9.492973 GGTAGTACAAAGAACACCATAAGTAAA 57.507 33.333 2.06 0.00 0.00 2.01
337 338 8.873144 AGGTAGTACAAAGAACACCATAAGTAA 58.127 33.333 2.06 0.00 0.00 2.24
338 339 8.426569 AGGTAGTACAAAGAACACCATAAGTA 57.573 34.615 2.06 0.00 0.00 2.24
339 340 7.312415 AGGTAGTACAAAGAACACCATAAGT 57.688 36.000 2.06 0.00 0.00 2.24
340 341 7.876068 TCAAGGTAGTACAAAGAACACCATAAG 59.124 37.037 2.06 0.00 0.00 1.73
341 342 7.658575 GTCAAGGTAGTACAAAGAACACCATAA 59.341 37.037 2.06 0.00 0.00 1.90
342 343 7.156673 GTCAAGGTAGTACAAAGAACACCATA 58.843 38.462 2.06 0.00 0.00 2.74
343 344 5.995897 GTCAAGGTAGTACAAAGAACACCAT 59.004 40.000 2.06 0.00 0.00 3.55
344 345 5.104859 TGTCAAGGTAGTACAAAGAACACCA 60.105 40.000 2.06 0.00 0.00 4.17
345 346 5.362263 TGTCAAGGTAGTACAAAGAACACC 58.638 41.667 2.06 0.00 0.00 4.16
346 347 5.465724 CCTGTCAAGGTAGTACAAAGAACAC 59.534 44.000 2.06 0.00 38.96 3.32
347 348 5.607477 CCTGTCAAGGTAGTACAAAGAACA 58.393 41.667 2.06 0.00 38.96 3.18
362 363 9.350357 CTTTCAATTTATTCATCACCTGTCAAG 57.650 33.333 0.00 0.00 0.00 3.02
363 364 8.859090 ACTTTCAATTTATTCATCACCTGTCAA 58.141 29.630 0.00 0.00 0.00 3.18
364 365 8.408043 ACTTTCAATTTATTCATCACCTGTCA 57.592 30.769 0.00 0.00 0.00 3.58
365 366 9.696917 AAACTTTCAATTTATTCATCACCTGTC 57.303 29.630 0.00 0.00 0.00 3.51
418 419 0.389025 CCACGCAAAAGGAGGCTTTT 59.611 50.000 0.00 0.00 37.04 2.27
419 420 0.755327 ACCACGCAAAAGGAGGCTTT 60.755 50.000 0.00 0.00 0.00 3.51
420 421 0.755327 AACCACGCAAAAGGAGGCTT 60.755 50.000 0.00 0.00 0.00 4.35
421 422 0.755327 AAACCACGCAAAAGGAGGCT 60.755 50.000 0.00 0.00 0.00 4.58
422 423 0.104120 AAAACCACGCAAAAGGAGGC 59.896 50.000 0.00 0.00 0.00 4.70
423 424 2.595124 AAAAACCACGCAAAAGGAGG 57.405 45.000 0.00 0.00 0.00 4.30
538 539 5.173673 CACAAACGTGGTTTCATGATGAAAG 59.826 40.000 19.96 11.27 45.83 2.62
556 557 2.663826 TTGCCACAACTTCCACAAAC 57.336 45.000 0.00 0.00 0.00 2.93
568 569 3.005684 AGCATCGATTTTCTTTTGCCACA 59.994 39.130 0.00 0.00 0.00 4.17
585 586 6.551736 TCGGAAGTAGCATTTTTAAAGCATC 58.448 36.000 1.36 0.00 0.00 3.91
588 589 5.743872 CCATCGGAAGTAGCATTTTTAAAGC 59.256 40.000 0.00 0.00 0.00 3.51
593 594 3.378427 GCTCCATCGGAAGTAGCATTTTT 59.622 43.478 0.00 0.00 0.00 1.94
606 607 8.621286 ACTAAAATAAAATTAGTGCTCCATCGG 58.379 33.333 0.00 0.00 40.97 4.18
649 658 5.792741 TGAAAATTTTCAGCCCGAAATCAT 58.207 33.333 26.01 0.00 43.12 2.45
658 667 6.681777 TCTAAGAGCTTGAAAATTTTCAGCC 58.318 36.000 30.46 24.78 46.68 4.85
743 754 9.587772 GAGCTCATAAAGATGAACAGTAACTAA 57.412 33.333 9.40 0.00 41.62 2.24
744 755 8.749354 TGAGCTCATAAAGATGAACAGTAACTA 58.251 33.333 13.74 0.00 41.62 2.24
759 770 4.162320 CCCTTCTACACCTGAGCTCATAAA 59.838 45.833 18.63 0.61 0.00 1.40
760 771 3.706594 CCCTTCTACACCTGAGCTCATAA 59.293 47.826 18.63 0.24 0.00 1.90
770 781 1.002087 CGAAAGTGCCCTTCTACACCT 59.998 52.381 0.00 0.00 37.51 4.00
772 783 0.796927 GCGAAAGTGCCCTTCTACAC 59.203 55.000 0.00 0.00 37.05 2.90
1019 1034 0.868406 GAGGCTTCTGTTGACAACGG 59.132 55.000 19.34 19.34 39.17 4.44
1095 1110 2.715763 AGTAGAACTTGAGGGGGTCA 57.284 50.000 0.00 0.00 0.00 4.02
1116 1131 1.089978 TGTGGTAGAGAAGGAGGGGA 58.910 55.000 0.00 0.00 0.00 4.81
1125 1140 4.221530 AGATGATGCAGATGTGGTAGAGA 58.778 43.478 0.00 0.00 0.00 3.10
1251 1266 2.438148 CGCGCACAACAATGGCATG 61.438 57.895 8.75 0.00 0.00 4.06
1707 1722 3.087666 GCCGAGCTTGGAGGAGAGG 62.088 68.421 25.25 0.36 0.00 3.69
1758 1773 2.548295 GGCGAAGGTGTTGGCGAAA 61.548 57.895 0.00 0.00 38.23 3.46
2199 2214 0.031585 CGACGACCAAGAACACCTCA 59.968 55.000 0.00 0.00 0.00 3.86
2388 2403 1.806542 ACCAGCACGTTGATCATGAAC 59.193 47.619 0.00 0.00 0.00 3.18
2480 2495 3.741830 TTGTTCTCCACCGTGCGCA 62.742 57.895 5.66 5.66 0.00 6.09
2495 2510 0.605589 CTCCTCGCTGACCTTCTTGT 59.394 55.000 0.00 0.00 0.00 3.16
2598 2613 1.308069 GGTACACTGAGACCGGCGTA 61.308 60.000 6.01 0.00 0.00 4.42
2610 2625 3.375699 CATAAGGTGGAGGAGGTACACT 58.624 50.000 0.00 0.00 35.53 3.55
2957 2972 1.488261 GGGCGCGTAGTTGAGTATGC 61.488 60.000 8.43 0.86 0.00 3.14
2982 2997 1.300233 GTCGATGAGGATGGCGACC 60.300 63.158 0.00 0.00 45.16 4.79
2995 3010 3.532155 GAGGCTGCCTCGGTCGAT 61.532 66.667 31.03 2.26 41.08 3.59
3228 3243 3.282745 GAACTCCTGCGTCGCCTCA 62.283 63.158 15.88 0.00 0.00 3.86
3250 3265 4.487412 GTCGTCTACCCACCGCCG 62.487 72.222 0.00 0.00 0.00 6.46
3251 3266 2.934570 TTGTCGTCTACCCACCGCC 61.935 63.158 0.00 0.00 0.00 6.13
3252 3267 1.735559 GTTGTCGTCTACCCACCGC 60.736 63.158 0.00 0.00 0.00 5.68
3261 3276 1.292223 CATGACCCGGTTGTCGTCT 59.708 57.895 0.00 0.00 38.11 4.18
3375 3390 3.894947 GGCGTCTCGAGGCTCTCC 61.895 72.222 16.21 9.60 41.51 3.71
3474 3489 3.552384 AGCGTGGACAACCGGGAA 61.552 61.111 6.32 0.00 39.42 3.97
3533 3548 1.304134 ATGGTTCCTCAAACGGGGC 60.304 57.895 0.00 0.00 38.87 5.80
3545 3560 4.440663 GGAGGAATTTAAGCTGCATGGTTC 60.441 45.833 1.02 0.00 37.56 3.62
3582 3597 7.220300 CGTACTCCAGCTTGTAGTTAAATACTG 59.780 40.741 13.68 8.07 37.73 2.74
3583 3598 7.094032 ACGTACTCCAGCTTGTAGTTAAATACT 60.094 37.037 13.68 0.00 41.04 2.12
3584 3599 7.031975 ACGTACTCCAGCTTGTAGTTAAATAC 58.968 38.462 6.13 6.13 0.00 1.89
3600 3615 4.389890 ACAAACACAACTACGTACTCCA 57.610 40.909 0.00 0.00 0.00 3.86
3601 3616 6.826893 TTTACAAACACAACTACGTACTCC 57.173 37.500 0.00 0.00 0.00 3.85
3602 3617 9.150653 CAAATTTACAAACACAACTACGTACTC 57.849 33.333 0.00 0.00 0.00 2.59
3603 3618 8.667463 ACAAATTTACAAACACAACTACGTACT 58.333 29.630 0.00 0.00 0.00 2.73
3604 3619 8.825064 ACAAATTTACAAACACAACTACGTAC 57.175 30.769 0.00 0.00 0.00 3.67
3633 3653 6.761714 CCAAGATGTTACTACATGAGGTTACC 59.238 42.308 0.00 0.00 44.90 2.85
3647 3674 3.200165 ACCTAAGCCTCCCAAGATGTTAC 59.800 47.826 0.00 0.00 0.00 2.50
3648 3675 3.454812 GACCTAAGCCTCCCAAGATGTTA 59.545 47.826 0.00 0.00 0.00 2.41
3650 3677 1.840635 GACCTAAGCCTCCCAAGATGT 59.159 52.381 0.00 0.00 0.00 3.06
3652 3679 1.010170 AGGACCTAAGCCTCCCAAGAT 59.990 52.381 0.00 0.00 0.00 2.40
3654 3681 1.763545 GTAGGACCTAAGCCTCCCAAG 59.236 57.143 1.75 0.00 36.96 3.61
3655 3682 1.365028 AGTAGGACCTAAGCCTCCCAA 59.635 52.381 1.75 0.00 36.96 4.12
3656 3683 1.016415 AGTAGGACCTAAGCCTCCCA 58.984 55.000 1.75 0.00 36.96 4.37
3659 3686 4.650131 ACAATACAGTAGGACCTAAGCCTC 59.350 45.833 1.75 0.00 36.96 4.70
3660 3687 4.621769 ACAATACAGTAGGACCTAAGCCT 58.378 43.478 1.75 0.00 39.56 4.58
3661 3688 6.667558 ATACAATACAGTAGGACCTAAGCC 57.332 41.667 1.75 0.00 0.00 4.35
3662 3689 8.202137 TCAAATACAATACAGTAGGACCTAAGC 58.798 37.037 1.75 0.00 0.00 3.09
3663 3690 9.530633 GTCAAATACAATACAGTAGGACCTAAG 57.469 37.037 1.75 1.65 0.00 2.18
3664 3691 9.038072 TGTCAAATACAATACAGTAGGACCTAA 57.962 33.333 1.75 0.00 34.29 2.69
3727 3758 4.402155 TGCCAAAAAGAAGAAGAAGAAGCA 59.598 37.500 0.00 0.00 0.00 3.91
3728 3759 4.742167 GTGCCAAAAAGAAGAAGAAGAAGC 59.258 41.667 0.00 0.00 0.00 3.86
3729 3760 5.894807 TGTGCCAAAAAGAAGAAGAAGAAG 58.105 37.500 0.00 0.00 0.00 2.85
3730 3761 5.913137 TGTGCCAAAAAGAAGAAGAAGAA 57.087 34.783 0.00 0.00 0.00 2.52
3731 3762 5.913137 TTGTGCCAAAAAGAAGAAGAAGA 57.087 34.783 0.00 0.00 0.00 2.87
3732 3763 6.966435 TTTTGTGCCAAAAAGAAGAAGAAG 57.034 33.333 9.70 0.00 0.00 2.85
3733 3764 9.612066 ATTATTTTGTGCCAAAAAGAAGAAGAA 57.388 25.926 14.37 0.00 34.70 2.52
3734 3765 9.044150 CATTATTTTGTGCCAAAAAGAAGAAGA 57.956 29.630 14.37 0.00 34.70 2.87
3735 3766 7.799914 GCATTATTTTGTGCCAAAAAGAAGAAG 59.200 33.333 14.37 5.88 34.70 2.85
3736 3767 7.518052 CGCATTATTTTGTGCCAAAAAGAAGAA 60.518 33.333 14.37 7.07 34.70 2.52
3737 3768 6.073873 CGCATTATTTTGTGCCAAAAAGAAGA 60.074 34.615 14.37 3.61 34.70 2.87
3738 3769 6.072733 CGCATTATTTTGTGCCAAAAAGAAG 58.927 36.000 14.37 8.49 34.70 2.85
3739 3770 5.755375 TCGCATTATTTTGTGCCAAAAAGAA 59.245 32.000 14.37 9.40 38.08 2.52
3740 3771 5.176590 GTCGCATTATTTTGTGCCAAAAAGA 59.823 36.000 14.37 8.46 38.08 2.52
3741 3772 5.373262 GTCGCATTATTTTGTGCCAAAAAG 58.627 37.500 14.37 8.24 38.08 2.27
3742 3773 4.084849 CGTCGCATTATTTTGTGCCAAAAA 60.085 37.500 14.37 6.63 38.08 1.94
3743 3774 3.426859 CGTCGCATTATTTTGTGCCAAAA 59.573 39.130 13.22 13.22 38.08 2.44
3744 3775 2.983136 CGTCGCATTATTTTGTGCCAAA 59.017 40.909 0.00 0.00 38.08 3.28
3745 3776 2.226674 TCGTCGCATTATTTTGTGCCAA 59.773 40.909 0.00 0.00 38.08 4.52
3746 3777 1.807142 TCGTCGCATTATTTTGTGCCA 59.193 42.857 0.00 0.00 38.08 4.92
3747 3778 2.535934 TCGTCGCATTATTTTGTGCC 57.464 45.000 0.00 0.00 38.08 5.01
3748 3779 3.035942 GGATCGTCGCATTATTTTGTGC 58.964 45.455 0.00 0.00 37.97 4.57
3749 3780 4.271590 TGGATCGTCGCATTATTTTGTG 57.728 40.909 0.00 0.00 0.00 3.33
3750 3781 5.499139 AATGGATCGTCGCATTATTTTGT 57.501 34.783 0.00 0.00 0.00 2.83
3751 3782 6.810888 AAAATGGATCGTCGCATTATTTTG 57.189 33.333 0.00 0.00 0.00 2.44
3752 3783 7.032580 TGAAAAATGGATCGTCGCATTATTTT 58.967 30.769 0.00 0.00 0.00 1.82
3753 3784 6.559810 TGAAAAATGGATCGTCGCATTATTT 58.440 32.000 0.00 0.00 0.00 1.40
3754 3785 6.130298 TGAAAAATGGATCGTCGCATTATT 57.870 33.333 0.00 0.00 0.00 1.40
3755 3786 5.749596 TGAAAAATGGATCGTCGCATTAT 57.250 34.783 0.00 0.00 0.00 1.28
3756 3787 5.295540 TGATGAAAAATGGATCGTCGCATTA 59.704 36.000 0.00 0.00 34.92 1.90
3757 3788 4.096231 TGATGAAAAATGGATCGTCGCATT 59.904 37.500 0.00 0.00 34.92 3.56
3758 3789 3.627123 TGATGAAAAATGGATCGTCGCAT 59.373 39.130 0.00 0.00 34.92 4.73
3759 3790 3.006247 TGATGAAAAATGGATCGTCGCA 58.994 40.909 0.00 0.00 34.92 5.10
3760 3791 3.673746 TGATGAAAAATGGATCGTCGC 57.326 42.857 0.00 0.00 34.92 5.19
3761 3792 8.786937 AATTAATGATGAAAAATGGATCGTCG 57.213 30.769 0.00 0.00 34.92 5.12
3763 3794 9.236691 CGAAATTAATGATGAAAAATGGATCGT 57.763 29.630 0.00 0.00 0.00 3.73
3764 3795 9.449550 TCGAAATTAATGATGAAAAATGGATCG 57.550 29.630 0.00 0.00 0.00 3.69
3775 3806 8.491331 TGTCTTGTCATCGAAATTAATGATGA 57.509 30.769 11.14 11.14 44.48 2.92
3776 3807 9.218359 CTTGTCTTGTCATCGAAATTAATGATG 57.782 33.333 7.59 7.59 40.61 3.07
3777 3808 8.950210 ACTTGTCTTGTCATCGAAATTAATGAT 58.050 29.630 0.00 0.00 34.60 2.45
3778 3809 8.322906 ACTTGTCTTGTCATCGAAATTAATGA 57.677 30.769 0.00 0.00 0.00 2.57
3779 3810 8.955061 AACTTGTCTTGTCATCGAAATTAATG 57.045 30.769 0.00 0.00 0.00 1.90
3780 3811 8.237267 GGAACTTGTCTTGTCATCGAAATTAAT 58.763 33.333 0.00 0.00 0.00 1.40
3781 3812 7.227711 TGGAACTTGTCTTGTCATCGAAATTAA 59.772 33.333 0.00 0.00 0.00 1.40
3782 3813 6.708502 TGGAACTTGTCTTGTCATCGAAATTA 59.291 34.615 0.00 0.00 0.00 1.40
3783 3814 5.530915 TGGAACTTGTCTTGTCATCGAAATT 59.469 36.000 0.00 0.00 0.00 1.82
3784 3815 5.063204 TGGAACTTGTCTTGTCATCGAAAT 58.937 37.500 0.00 0.00 0.00 2.17
3785 3816 4.447290 TGGAACTTGTCTTGTCATCGAAA 58.553 39.130 0.00 0.00 0.00 3.46
3786 3817 4.066646 TGGAACTTGTCTTGTCATCGAA 57.933 40.909 0.00 0.00 0.00 3.71
3787 3818 3.744238 TGGAACTTGTCTTGTCATCGA 57.256 42.857 0.00 0.00 0.00 3.59
3788 3819 5.362556 AATTGGAACTTGTCTTGTCATCG 57.637 39.130 0.00 0.00 0.00 3.84
3789 3820 6.418819 CACAAATTGGAACTTGTCTTGTCATC 59.581 38.462 0.00 0.00 33.51 2.92
3790 3821 6.275335 CACAAATTGGAACTTGTCTTGTCAT 58.725 36.000 0.00 0.00 33.51 3.06
3791 3822 5.649557 CACAAATTGGAACTTGTCTTGTCA 58.350 37.500 0.00 0.00 33.51 3.58
3792 3823 4.504097 GCACAAATTGGAACTTGTCTTGTC 59.496 41.667 0.00 0.00 33.51 3.18
3793 3824 4.160252 AGCACAAATTGGAACTTGTCTTGT 59.840 37.500 0.00 0.00 33.51 3.16
3794 3825 4.685924 AGCACAAATTGGAACTTGTCTTG 58.314 39.130 0.00 0.00 33.51 3.02
3795 3826 5.343307 AAGCACAAATTGGAACTTGTCTT 57.657 34.783 0.00 0.00 33.51 3.01
3796 3827 6.265196 TCATAAGCACAAATTGGAACTTGTCT 59.735 34.615 0.00 0.00 33.51 3.41
3797 3828 6.446318 TCATAAGCACAAATTGGAACTTGTC 58.554 36.000 0.00 0.00 33.51 3.18
3798 3829 6.403866 TCATAAGCACAAATTGGAACTTGT 57.596 33.333 0.00 0.00 36.19 3.16
3799 3830 7.274904 CAGATCATAAGCACAAATTGGAACTTG 59.725 37.037 0.00 0.00 0.00 3.16
3800 3831 7.318141 CAGATCATAAGCACAAATTGGAACTT 58.682 34.615 0.00 0.65 0.00 2.66
3801 3832 6.626623 GCAGATCATAAGCACAAATTGGAACT 60.627 38.462 0.00 0.00 0.00 3.01
3802 3833 5.517770 GCAGATCATAAGCACAAATTGGAAC 59.482 40.000 0.00 0.00 0.00 3.62
3803 3834 5.653507 GCAGATCATAAGCACAAATTGGAA 58.346 37.500 0.00 0.00 0.00 3.53
3804 3835 4.201940 CGCAGATCATAAGCACAAATTGGA 60.202 41.667 0.00 0.00 0.00 3.53
3805 3836 4.039703 CGCAGATCATAAGCACAAATTGG 58.960 43.478 0.00 0.00 0.00 3.16
3806 3837 4.731961 GTCGCAGATCATAAGCACAAATTG 59.268 41.667 0.00 0.00 40.67 2.32
3807 3838 4.637534 AGTCGCAGATCATAAGCACAAATT 59.362 37.500 0.00 0.00 40.67 1.82
3808 3839 4.194640 AGTCGCAGATCATAAGCACAAAT 58.805 39.130 0.00 0.00 40.67 2.32
3809 3840 3.599343 AGTCGCAGATCATAAGCACAAA 58.401 40.909 0.00 0.00 40.67 2.83
3810 3841 3.118992 AGAGTCGCAGATCATAAGCACAA 60.119 43.478 0.00 0.00 40.67 3.33
3811 3842 2.428530 AGAGTCGCAGATCATAAGCACA 59.571 45.455 0.00 0.00 40.67 4.57
3812 3843 3.049206 GAGAGTCGCAGATCATAAGCAC 58.951 50.000 0.00 0.00 40.67 4.40
3813 3844 2.689983 TGAGAGTCGCAGATCATAAGCA 59.310 45.455 0.00 0.00 40.67 3.91
3814 3845 3.361794 TGAGAGTCGCAGATCATAAGC 57.638 47.619 0.00 0.00 40.67 3.09
3815 3846 4.502282 GTGTTGAGAGTCGCAGATCATAAG 59.498 45.833 0.00 0.00 40.67 1.73
3816 3847 4.082245 TGTGTTGAGAGTCGCAGATCATAA 60.082 41.667 0.00 0.00 40.67 1.90
3817 3848 3.443681 TGTGTTGAGAGTCGCAGATCATA 59.556 43.478 0.00 0.00 40.67 2.15
3818 3849 2.232208 TGTGTTGAGAGTCGCAGATCAT 59.768 45.455 0.00 0.00 40.67 2.45
3819 3850 1.613437 TGTGTTGAGAGTCGCAGATCA 59.387 47.619 0.00 0.00 40.67 2.92
3820 3851 2.095008 TCTGTGTTGAGAGTCGCAGATC 60.095 50.000 0.00 0.00 43.28 2.75
3821 3852 1.889170 TCTGTGTTGAGAGTCGCAGAT 59.111 47.619 0.00 0.00 43.28 2.90
3822 3853 1.001268 GTCTGTGTTGAGAGTCGCAGA 60.001 52.381 0.00 4.64 45.03 4.26
3823 3854 1.269257 TGTCTGTGTTGAGAGTCGCAG 60.269 52.381 0.00 0.00 41.66 5.18
3824 3855 0.744281 TGTCTGTGTTGAGAGTCGCA 59.256 50.000 0.00 0.00 0.00 5.10
3825 3856 1.852942 TTGTCTGTGTTGAGAGTCGC 58.147 50.000 0.00 0.00 0.00 5.19
3826 3857 4.383052 GTGTATTGTCTGTGTTGAGAGTCG 59.617 45.833 0.00 0.00 0.00 4.18
3827 3858 5.289595 TGTGTATTGTCTGTGTTGAGAGTC 58.710 41.667 0.00 0.00 0.00 3.36
3828 3859 5.276461 TGTGTATTGTCTGTGTTGAGAGT 57.724 39.130 0.00 0.00 0.00 3.24
3829 3860 6.258727 AGTTTGTGTATTGTCTGTGTTGAGAG 59.741 38.462 0.00 0.00 0.00 3.20
3830 3861 6.037062 CAGTTTGTGTATTGTCTGTGTTGAGA 59.963 38.462 0.00 0.00 0.00 3.27
3831 3862 6.037062 TCAGTTTGTGTATTGTCTGTGTTGAG 59.963 38.462 0.00 0.00 0.00 3.02
3832 3863 5.877564 TCAGTTTGTGTATTGTCTGTGTTGA 59.122 36.000 0.00 0.00 0.00 3.18
3833 3864 6.037062 TCTCAGTTTGTGTATTGTCTGTGTTG 59.963 38.462 0.00 0.00 0.00 3.33
3834 3865 6.112734 TCTCAGTTTGTGTATTGTCTGTGTT 58.887 36.000 0.00 0.00 0.00 3.32
3835 3866 5.670485 TCTCAGTTTGTGTATTGTCTGTGT 58.330 37.500 0.00 0.00 0.00 3.72
3836 3867 6.400409 CGATCTCAGTTTGTGTATTGTCTGTG 60.400 42.308 0.00 0.00 0.00 3.66
3837 3868 5.635280 CGATCTCAGTTTGTGTATTGTCTGT 59.365 40.000 0.00 0.00 0.00 3.41
3838 3869 5.635280 ACGATCTCAGTTTGTGTATTGTCTG 59.365 40.000 0.00 0.00 0.00 3.51
3839 3870 5.784177 ACGATCTCAGTTTGTGTATTGTCT 58.216 37.500 0.00 0.00 0.00 3.41
3840 3871 5.633601 TGACGATCTCAGTTTGTGTATTGTC 59.366 40.000 0.00 0.00 36.06 3.18
3860 3891 5.399892 GTCTGTTGAGTAGTCTTTCTTGACG 59.600 44.000 0.00 0.00 41.47 4.35
3894 3925 4.149221 CGTTCGTATGCAAGTGTTAGAACA 59.851 41.667 14.22 0.00 37.25 3.18
3899 3930 3.300852 TCCGTTCGTATGCAAGTGTTA 57.699 42.857 0.00 0.00 0.00 2.41
3903 3934 2.094182 AGTGATCCGTTCGTATGCAAGT 60.094 45.455 0.00 0.00 0.00 3.16
3907 3938 5.333111 GGATTTAAGTGATCCGTTCGTATGC 60.333 44.000 0.00 0.00 34.24 3.14
3966 3997 6.863645 TCACTTTCAAACTGATAGACTTCTCG 59.136 38.462 1.78 0.00 31.28 4.04
3976 4007 4.261197 GCTCGGTTTCACTTTCAAACTGAT 60.261 41.667 7.16 0.00 44.43 2.90
4073 4105 6.805271 GGAGTTGATGTCATTCAAAGTTGATG 59.195 38.462 0.00 0.00 37.36 3.07
4074 4106 6.491062 TGGAGTTGATGTCATTCAAAGTTGAT 59.509 34.615 0.00 0.00 37.36 2.57
4105 4137 4.091365 CACATTCTTCATACTGAACGCGAA 59.909 41.667 15.93 0.00 32.21 4.70
4162 4194 5.810587 GTCTGAAGAAGGTCGTTATGCAATA 59.189 40.000 0.00 0.00 0.00 1.90
4182 4214 2.797156 CAAGTGTCTTGACCTTCGTCTG 59.203 50.000 3.73 0.00 39.94 3.51
4284 4316 0.966179 TGCTCGTGCTCTTAAGTGGA 59.034 50.000 11.19 0.00 40.48 4.02
4291 4323 2.462456 TTTGATCTGCTCGTGCTCTT 57.538 45.000 11.19 0.00 40.48 2.85
4345 4378 3.044235 TGTACATTCAGCAGGTGACAG 57.956 47.619 0.48 0.26 33.71 3.51
4503 4536 7.959651 CACTTCTGTATGCTAATGTTGTCTTTC 59.040 37.037 0.00 0.00 0.00 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.