Multiple sequence alignment - TraesCS5B01G074800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G074800 chr5B 100.000 2718 0 0 1 2718 89028780 89031497 0.000000e+00 5020
1 TraesCS5B01G074800 chr5D 90.597 2244 98 46 517 2683 80359719 80361926 0.000000e+00 2870
2 TraesCS5B01G074800 chr5D 88.512 531 30 6 1 529 80329866 80330367 4.970000e-172 614
3 TraesCS5B01G074800 chr5D 90.722 388 26 4 581 968 80187770 80187393 2.410000e-140 508
4 TraesCS5B01G074800 chr5D 83.871 217 26 9 162 373 423328253 423328465 5.940000e-47 198
5 TraesCS5B01G074800 chr5D 94.118 102 4 1 700 801 80189380 80189281 1.300000e-33 154
6 TraesCS5B01G074800 chr5A 91.703 1386 48 13 947 2274 76742173 76743549 0.000000e+00 1860
7 TraesCS5B01G074800 chr5A 91.740 678 33 11 291 950 76741421 76742093 0.000000e+00 920
8 TraesCS5B01G074800 chr5A 92.245 245 18 1 2 245 76741188 76741432 2.000000e-91 346
9 TraesCS5B01G074800 chr5A 82.667 375 36 13 2372 2718 76846829 76847202 3.400000e-79 305
10 TraesCS5B01G074800 chr5A 81.551 374 63 4 3 370 372930534 372930907 1.220000e-78 303
11 TraesCS5B01G074800 chr3D 79.077 325 57 10 65 383 590226548 590226867 2.120000e-51 213
12 TraesCS5B01G074800 chr1A 84.375 224 28 6 153 372 588120437 588120217 2.120000e-51 213
13 TraesCS5B01G074800 chr7D 83.482 224 32 4 153 373 388967405 388967184 1.280000e-48 204
14 TraesCS5B01G074800 chr2A 80.078 256 41 8 132 380 158183121 158182869 5.980000e-42 182
15 TraesCS5B01G074800 chr6A 77.926 299 52 13 80 371 137169612 137169903 1.000000e-39 174
16 TraesCS5B01G074800 chr1B 77.627 295 59 6 82 372 573750045 573749754 3.600000e-39 172


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G074800 chr5B 89028780 89031497 2717 False 5020 5020 100.000 1 2718 1 chr5B.!!$F1 2717
1 TraesCS5B01G074800 chr5D 80359719 80361926 2207 False 2870 2870 90.597 517 2683 1 chr5D.!!$F2 2166
2 TraesCS5B01G074800 chr5D 80329866 80330367 501 False 614 614 88.512 1 529 1 chr5D.!!$F1 528
3 TraesCS5B01G074800 chr5D 80187393 80189380 1987 True 331 508 92.420 581 968 2 chr5D.!!$R1 387
4 TraesCS5B01G074800 chr5A 76741188 76743549 2361 False 1042 1860 91.896 2 2274 3 chr5A.!!$F3 2272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 1.159713 CGAGCACAGTGAAGGCAACA 61.16 55.0 4.15 0.0 41.41 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 3102 1.134175 CCAACATTCACGGGCATAACC 59.866 52.381 0.0 0.0 37.93 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 1.159713 CGAGCACAGTGAAGGCAACA 61.160 55.000 4.15 0.00 41.41 3.33
231 235 6.815641 TGCAAAAATATATTCCGCAACACAAT 59.184 30.769 11.77 0.00 0.00 2.71
232 236 7.332926 TGCAAAAATATATTCCGCAACACAATT 59.667 29.630 11.77 0.00 0.00 2.32
235 239 9.651913 AAAAATATATTCCGCAACACAATTTCT 57.348 25.926 0.00 0.00 0.00 2.52
286 290 3.297472 GTTGCAAACTAGAGGAAAACGC 58.703 45.455 0.00 0.00 45.32 4.84
342 346 1.741145 GAGGCGGCGGATCTTTTAAAA 59.259 47.619 9.78 0.00 0.00 1.52
396 400 8.420222 CCCAAATAATAATTGGTGTTCTATGCA 58.580 33.333 6.38 0.00 44.77 3.96
460 477 5.105797 TGTTTGTATGCCCTTAATGCTTCAG 60.106 40.000 0.00 0.00 0.00 3.02
463 480 4.398988 TGTATGCCCTTAATGCTTCAGTTG 59.601 41.667 0.00 0.00 0.00 3.16
484 502 6.264518 AGTTGGAGTCAATAAAATTCAACCGT 59.735 34.615 0.00 0.00 35.29 4.83
485 503 7.446013 AGTTGGAGTCAATAAAATTCAACCGTA 59.554 33.333 0.00 0.00 35.29 4.02
486 504 7.136289 TGGAGTCAATAAAATTCAACCGTAC 57.864 36.000 0.00 0.00 0.00 3.67
487 505 6.149807 TGGAGTCAATAAAATTCAACCGTACC 59.850 38.462 0.00 0.00 0.00 3.34
488 506 6.173191 AGTCAATAAAATTCAACCGTACCG 57.827 37.500 0.00 0.00 0.00 4.02
501 519 1.785951 GTACCGTTGCCGAAGAAGC 59.214 57.895 0.00 0.00 35.63 3.86
597 1629 1.279271 GGCCAGAAGAAGCAGAGGTTA 59.721 52.381 0.00 0.00 0.00 2.85
647 1679 1.800286 GCGCTTCAAAATCTGATGGCC 60.800 52.381 0.00 0.00 32.78 5.36
693 1725 5.787380 AGCTGTCAAAGGGAAATTTTGATC 58.213 37.500 4.02 0.00 43.90 2.92
708 1740 8.807667 AAATTTTGATCAGATTTCAGTGTCAC 57.192 30.769 11.31 0.00 0.00 3.67
1288 2413 3.394836 GCGGTCTCCAAGGCCTCT 61.395 66.667 5.23 0.00 38.01 3.69
1293 2418 2.435586 CTCCAAGGCCTCTGTGCG 60.436 66.667 5.23 0.00 0.00 5.34
1314 2439 2.671963 CAGCAGCAGCAGCAGGAA 60.672 61.111 12.92 0.00 45.49 3.36
1651 2800 5.944007 AGGAATTGGCTCGTTTTGTATAAGT 59.056 36.000 0.00 0.00 0.00 2.24
1676 2825 5.418310 TGTTTCTTTGTTCCAACGATCTC 57.582 39.130 0.00 0.00 0.00 2.75
1682 2831 5.696724 TCTTTGTTCCAACGATCTCTCTTTC 59.303 40.000 0.00 0.00 0.00 2.62
1683 2832 3.575630 TGTTCCAACGATCTCTCTTTCG 58.424 45.455 0.00 0.00 41.04 3.46
1690 2839 2.288213 ACGATCTCTCTTTCGTGTGCAA 60.288 45.455 0.00 0.00 46.03 4.08
1911 3090 2.296190 GGGATTGCCGGGAATATTCAAC 59.704 50.000 22.23 7.71 33.83 3.18
1923 3102 6.403200 CGGGAATATTCAACCTTAACACTGTG 60.403 42.308 17.07 6.19 0.00 3.66
2002 3182 6.072893 GGCTAAACGGTGATTCACTTCTTTAA 60.073 38.462 16.02 0.00 34.40 1.52
2004 3184 8.021396 GCTAAACGGTGATTCACTTCTTTAATT 58.979 33.333 16.02 4.30 34.40 1.40
2008 3188 6.086222 CGGTGATTCACTTCTTTAATTGGTG 58.914 40.000 16.02 0.00 34.40 4.17
2009 3189 6.293955 CGGTGATTCACTTCTTTAATTGGTGT 60.294 38.462 16.02 0.00 34.40 4.16
2010 3190 7.094975 CGGTGATTCACTTCTTTAATTGGTGTA 60.095 37.037 16.02 0.00 34.40 2.90
2011 3191 8.739972 GGTGATTCACTTCTTTAATTGGTGTAT 58.260 33.333 16.02 0.00 34.40 2.29
2046 3226 3.766051 AGAATTCAGGTCTGGGAAATTGC 59.234 43.478 8.44 0.00 0.00 3.56
2088 3268 0.391597 GTTGGACGAGTGAGGGAACA 59.608 55.000 0.00 0.00 0.00 3.18
2090 3270 1.124780 TGGACGAGTGAGGGAACAAA 58.875 50.000 0.00 0.00 0.00 2.83
2114 3294 1.872197 CTTGGAAATTTGGGCGGCGA 61.872 55.000 12.98 0.00 0.00 5.54
2164 3344 5.121105 GGGGTTCGTGTATGCTAAACTAAT 58.879 41.667 0.00 0.00 0.00 1.73
2209 3393 1.447314 GGTCGGCTCAAGGTTACGG 60.447 63.158 0.00 0.00 0.00 4.02
2211 3395 0.527565 GTCGGCTCAAGGTTACGGTA 59.472 55.000 0.00 0.00 0.00 4.02
2374 3558 7.047460 TGTTATATACTCCTTCCTTTCGTCC 57.953 40.000 0.00 0.00 0.00 4.79
2377 3561 0.977395 ACTCCTTCCTTTCGTCCCAG 59.023 55.000 0.00 0.00 0.00 4.45
2385 3569 2.298163 TCCTTTCGTCCCAGTAAGTGTC 59.702 50.000 0.00 0.00 0.00 3.67
2386 3570 2.325761 CTTTCGTCCCAGTAAGTGTCG 58.674 52.381 0.00 0.00 0.00 4.35
2387 3571 1.321474 TTCGTCCCAGTAAGTGTCGT 58.679 50.000 0.00 0.00 0.00 4.34
2396 3580 5.711506 TCCCAGTAAGTGTCGTTGATAACTA 59.288 40.000 0.00 0.00 0.00 2.24
2408 3592 8.493547 TGTCGTTGATAACTATGTACTAGATCG 58.506 37.037 0.00 0.00 0.00 3.69
2409 3593 7.956403 GTCGTTGATAACTATGTACTAGATCGG 59.044 40.741 0.00 0.00 0.00 4.18
2410 3594 6.741811 CGTTGATAACTATGTACTAGATCGGC 59.258 42.308 0.00 0.00 0.00 5.54
2411 3595 7.572539 CGTTGATAACTATGTACTAGATCGGCA 60.573 40.741 0.00 0.00 0.00 5.69
2422 3606 7.915508 TGTACTAGATCGGCAACATTTATTTG 58.084 34.615 0.00 0.00 0.00 2.32
2427 3611 4.873746 TCGGCAACATTTATTTGGGAAA 57.126 36.364 0.00 0.00 0.00 3.13
2428 3612 4.815269 TCGGCAACATTTATTTGGGAAAG 58.185 39.130 0.00 0.00 0.00 2.62
2430 3614 4.864247 CGGCAACATTTATTTGGGAAAGAG 59.136 41.667 0.00 0.00 0.00 2.85
2502 3690 4.793071 TGTTAACATGTGATTTCTTGCCG 58.207 39.130 3.59 0.00 0.00 5.69
2504 3692 5.182950 TGTTAACATGTGATTTCTTGCCGAT 59.817 36.000 3.59 0.00 0.00 4.18
2510 3698 5.739752 TGTGATTTCTTGCCGATATTGAG 57.260 39.130 0.00 0.00 0.00 3.02
2514 3702 6.203530 GTGATTTCTTGCCGATATTGAGATGA 59.796 38.462 0.00 0.00 0.00 2.92
2515 3703 5.991328 TTTCTTGCCGATATTGAGATGAC 57.009 39.130 0.00 0.00 0.00 3.06
2516 3704 4.670896 TCTTGCCGATATTGAGATGACA 57.329 40.909 0.00 0.00 0.00 3.58
2517 3705 5.219343 TCTTGCCGATATTGAGATGACAT 57.781 39.130 0.00 0.00 0.00 3.06
2518 3706 6.345096 TCTTGCCGATATTGAGATGACATA 57.655 37.500 0.00 0.00 0.00 2.29
2519 3707 6.939622 TCTTGCCGATATTGAGATGACATAT 58.060 36.000 0.00 0.00 0.00 1.78
2520 3708 8.066612 TCTTGCCGATATTGAGATGACATATA 57.933 34.615 0.00 0.00 0.00 0.86
2578 3774 1.131504 GTGTCAAACAGAACCACGCAA 59.868 47.619 0.00 0.00 0.00 4.85
2598 3794 5.219633 GCAAAAGAGCGGTAGAAAATCAAA 58.780 37.500 0.00 0.00 0.00 2.69
2599 3795 5.863935 GCAAAAGAGCGGTAGAAAATCAAAT 59.136 36.000 0.00 0.00 0.00 2.32
2600 3796 7.027161 GCAAAAGAGCGGTAGAAAATCAAATA 58.973 34.615 0.00 0.00 0.00 1.40
2608 3822 8.567948 AGCGGTAGAAAATCAAATATTACATGG 58.432 33.333 0.00 0.00 0.00 3.66
2636 3850 3.165071 CTCAAGTTGGGGTAAAAGCCAT 58.835 45.455 2.34 0.00 37.54 4.40
2639 3853 0.901827 GTTGGGGTAAAAGCCATGGG 59.098 55.000 15.13 0.00 37.54 4.00
2651 3865 4.322057 AAGCCATGGGTTGAAGTTATCT 57.678 40.909 27.86 1.10 34.29 1.98
2667 3881 7.829211 TGAAGTTATCTAAATGTTCTTCCCCTG 59.171 37.037 0.00 0.00 31.90 4.45
2683 3897 8.280258 TCTTCCCCTGTTATCAAATATGAGAT 57.720 34.615 0.00 0.00 39.39 2.75
2684 3898 9.392506 TCTTCCCCTGTTATCAAATATGAGATA 57.607 33.333 0.00 0.00 39.39 1.98
2711 3925 8.709272 AACAAAGTTCTTCTCTAGGTAGTACT 57.291 34.615 0.00 0.00 0.00 2.73
2712 3926 9.804977 AACAAAGTTCTTCTCTAGGTAGTACTA 57.195 33.333 0.00 0.00 0.00 1.82
2713 3927 9.452287 ACAAAGTTCTTCTCTAGGTAGTACTAG 57.548 37.037 1.87 0.00 41.41 2.57
2714 3928 9.669887 CAAAGTTCTTCTCTAGGTAGTACTAGA 57.330 37.037 1.87 0.00 45.29 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 4.941657 TGTGCAACTGAAATTATGTGCAA 58.058 34.783 0.00 0.00 38.04 4.08
186 190 0.601558 ACATAGACCGTGTTGCGAGT 59.398 50.000 0.00 0.00 44.77 4.18
199 203 7.935520 TGCGGAATATATTTTTGCAACATAGA 58.064 30.769 14.19 0.00 0.00 1.98
258 262 6.959639 TTCCTCTAGTTTGCAACAAAGATT 57.040 33.333 0.00 0.00 0.00 2.40
286 290 3.559655 TCTGACACAATTTGACGGACAAG 59.440 43.478 2.79 0.00 39.77 3.16
396 400 6.239714 CCTGCCTCTACATAACAAGGATACAT 60.240 42.308 0.00 0.00 41.41 2.29
460 477 6.443792 ACGGTTGAATTTTATTGACTCCAAC 58.556 36.000 0.00 0.00 34.72 3.77
463 480 6.549061 GGTACGGTTGAATTTTATTGACTCC 58.451 40.000 0.00 0.00 0.00 3.85
501 519 2.069273 CGAAGTGGCCTCTAGTGTTTG 58.931 52.381 7.96 0.00 0.00 2.93
682 1714 8.909671 GTGACACTGAAATCTGATCAAAATTTC 58.090 33.333 23.76 23.76 39.01 2.17
693 1725 1.800586 CCACGGTGACACTGAAATCTG 59.199 52.381 21.31 8.07 0.00 2.90
1595 2744 4.507756 CCTAGATTGATTTGTTCGATCGCA 59.492 41.667 11.09 0.00 46.23 5.10
1662 2811 3.575630 CGAAAGAGAGATCGTTGGAACA 58.424 45.455 0.00 0.00 34.48 3.18
1676 2825 1.959747 CATGCTTGCACACGAAAGAG 58.040 50.000 0.00 0.00 0.00 2.85
1800 2953 6.744112 TGTTAATTTGTTTCACCCTCATCAC 58.256 36.000 0.00 0.00 0.00 3.06
1804 2957 7.093727 TGAGTTTGTTAATTTGTTTCACCCTCA 60.094 33.333 0.00 0.00 0.00 3.86
1806 2959 7.176589 TGAGTTTGTTAATTTGTTTCACCCT 57.823 32.000 0.00 0.00 0.00 4.34
1807 2960 7.170828 GGATGAGTTTGTTAATTTGTTTCACCC 59.829 37.037 0.00 0.00 0.00 4.61
1911 3090 2.752903 GGGCATAACCACAGTGTTAAGG 59.247 50.000 0.00 0.00 42.05 2.69
1923 3102 1.134175 CCAACATTCACGGGCATAACC 59.866 52.381 0.00 0.00 37.93 2.85
1967 3146 3.886505 TCACCGTTTAGCCAACATTCTTT 59.113 39.130 0.00 0.00 34.68 2.52
1968 3147 3.482436 TCACCGTTTAGCCAACATTCTT 58.518 40.909 0.00 0.00 34.68 2.52
1969 3148 3.134574 TCACCGTTTAGCCAACATTCT 57.865 42.857 0.00 0.00 34.68 2.40
2002 3182 9.920946 ATTCTTGAAGGTTACATATACACCAAT 57.079 29.630 0.00 0.00 32.43 3.16
2004 3184 9.391006 GAATTCTTGAAGGTTACATATACACCA 57.609 33.333 0.00 0.00 32.43 4.17
2008 3188 9.614792 ACCTGAATTCTTGAAGGTTACATATAC 57.385 33.333 8.95 0.00 40.14 1.47
2009 3189 9.832445 GACCTGAATTCTTGAAGGTTACATATA 57.168 33.333 14.54 0.00 43.12 0.86
2010 3190 8.552296 AGACCTGAATTCTTGAAGGTTACATAT 58.448 33.333 14.54 0.00 43.12 1.78
2011 3191 7.824289 CAGACCTGAATTCTTGAAGGTTACATA 59.176 37.037 14.54 0.00 43.12 2.29
2012 3192 6.656693 CAGACCTGAATTCTTGAAGGTTACAT 59.343 38.462 14.54 2.30 43.12 2.29
2088 3268 3.678289 GCCCAAATTTCCAAGATGCTTT 58.322 40.909 0.00 0.00 0.00 3.51
2090 3270 1.205417 CGCCCAAATTTCCAAGATGCT 59.795 47.619 0.00 0.00 0.00 3.79
2114 3294 2.507944 GCCGGCTGTCTCATCCAT 59.492 61.111 22.15 0.00 0.00 3.41
2209 3393 3.541713 CCGCCTCCTCCCTGCTAC 61.542 72.222 0.00 0.00 0.00 3.58
2284 3468 0.608308 AAAGGAAAGCCTACGCCACC 60.608 55.000 0.00 0.00 46.28 4.61
2349 3533 7.256225 GGGACGAAAGGAAGGAGTATATAACAT 60.256 40.741 0.00 0.00 0.00 2.71
2351 3535 6.041296 TGGGACGAAAGGAAGGAGTATATAAC 59.959 42.308 0.00 0.00 0.00 1.89
2352 3536 6.138263 TGGGACGAAAGGAAGGAGTATATAA 58.862 40.000 0.00 0.00 0.00 0.98
2354 3538 4.553678 TGGGACGAAAGGAAGGAGTATAT 58.446 43.478 0.00 0.00 0.00 0.86
2355 3539 3.958798 CTGGGACGAAAGGAAGGAGTATA 59.041 47.826 0.00 0.00 0.00 1.47
2356 3540 2.766828 CTGGGACGAAAGGAAGGAGTAT 59.233 50.000 0.00 0.00 0.00 2.12
2357 3541 2.176889 CTGGGACGAAAGGAAGGAGTA 58.823 52.381 0.00 0.00 0.00 2.59
2358 3542 0.977395 CTGGGACGAAAGGAAGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
2359 3543 0.977395 ACTGGGACGAAAGGAAGGAG 59.023 55.000 0.00 0.00 0.00 3.69
2360 3544 2.314071 TACTGGGACGAAAGGAAGGA 57.686 50.000 0.00 0.00 0.00 3.36
2361 3545 2.302157 ACTTACTGGGACGAAAGGAAGG 59.698 50.000 0.00 0.00 38.48 3.46
2362 3546 3.244112 ACACTTACTGGGACGAAAGGAAG 60.244 47.826 0.00 0.00 39.80 3.46
2363 3547 2.701951 ACACTTACTGGGACGAAAGGAA 59.298 45.455 0.00 0.00 0.00 3.36
2370 3554 1.001048 TCAACGACACTTACTGGGACG 60.001 52.381 0.00 0.00 42.51 4.79
2371 3555 2.806608 TCAACGACACTTACTGGGAC 57.193 50.000 0.00 0.00 0.00 4.46
2374 3558 7.033791 ACATAGTTATCAACGACACTTACTGG 58.966 38.462 0.00 0.00 36.23 4.00
2385 3569 6.741811 GCCGATCTAGTACATAGTTATCAACG 59.258 42.308 0.00 0.00 36.23 4.10
2386 3570 7.591165 TGCCGATCTAGTACATAGTTATCAAC 58.409 38.462 0.00 0.00 32.85 3.18
2387 3571 7.754851 TGCCGATCTAGTACATAGTTATCAA 57.245 36.000 0.00 0.00 32.85 2.57
2396 3580 8.559536 CAAATAAATGTTGCCGATCTAGTACAT 58.440 33.333 0.00 0.00 0.00 2.29
2404 3588 4.647424 TCCCAAATAAATGTTGCCGATC 57.353 40.909 0.00 0.00 0.00 3.69
2408 3592 6.036577 TCTCTTTCCCAAATAAATGTTGCC 57.963 37.500 0.00 0.00 0.00 4.52
2409 3593 6.691508 ACTCTCTTTCCCAAATAAATGTTGC 58.308 36.000 0.00 0.00 0.00 4.17
2422 3606 7.106890 GGGCATTATCTAATACTCTCTTTCCC 58.893 42.308 0.00 0.00 0.00 3.97
2427 3611 5.336849 GCACGGGCATTATCTAATACTCTCT 60.337 44.000 3.77 0.00 40.72 3.10
2428 3612 4.865365 GCACGGGCATTATCTAATACTCTC 59.135 45.833 3.77 0.00 40.72 3.20
2485 3673 5.589855 TCAATATCGGCAAGAAATCACATGT 59.410 36.000 0.00 0.00 0.00 3.21
2487 3675 6.057533 TCTCAATATCGGCAAGAAATCACAT 58.942 36.000 0.00 0.00 0.00 3.21
2496 3684 8.883954 ATATATGTCATCTCAATATCGGCAAG 57.116 34.615 0.00 0.00 0.00 4.01
2499 3687 9.197694 GGTAATATATGTCATCTCAATATCGGC 57.802 37.037 0.00 0.00 0.00 5.54
2599 3795 8.748412 CCCAACTTGAGAATTTTCCATGTAATA 58.252 33.333 0.00 0.00 0.00 0.98
2600 3796 7.310609 CCCCAACTTGAGAATTTTCCATGTAAT 60.311 37.037 0.00 0.00 0.00 1.89
2608 3822 6.423905 GCTTTTACCCCAACTTGAGAATTTTC 59.576 38.462 0.00 0.00 0.00 2.29
2613 3827 3.227614 GGCTTTTACCCCAACTTGAGAA 58.772 45.455 0.00 0.00 0.00 2.87
2636 3850 8.934023 AAGAACATTTAGATAACTTCAACCCA 57.066 30.769 0.00 0.00 0.00 4.51
2639 3853 8.459635 GGGGAAGAACATTTAGATAACTTCAAC 58.540 37.037 0.00 0.00 35.48 3.18
2651 3865 8.893563 ATTTGATAACAGGGGAAGAACATTTA 57.106 30.769 0.00 0.00 0.00 1.40
2685 3899 9.804977 AGTACTACCTAGAGAAGAACTTTGTTA 57.195 33.333 0.00 0.00 0.00 2.41
2686 3900 8.709272 AGTACTACCTAGAGAAGAACTTTGTT 57.291 34.615 0.00 0.00 0.00 2.83
2687 3901 9.452287 CTAGTACTACCTAGAGAAGAACTTTGT 57.548 37.037 0.00 0.00 37.24 2.83
2688 3902 9.669887 TCTAGTACTACCTAGAGAAGAACTTTG 57.330 37.037 0.00 0.00 38.76 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.