Multiple sequence alignment - TraesCS5B01G074600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G074600 chr5B 100.000 3776 0 0 1 3776 88735362 88739137 0.000000e+00 6974
1 TraesCS5B01G074600 chr5B 91.894 1283 77 11 747 2017 88779691 88780958 0.000000e+00 1768
2 TraesCS5B01G074600 chr5B 84.499 1787 166 45 306 2028 88704096 88705835 0.000000e+00 1663
3 TraesCS5B01G074600 chr5B 94.311 914 46 1 2065 2978 88705833 88706740 0.000000e+00 1395
4 TraesCS5B01G074600 chr5B 93.176 762 46 2 2019 2774 88781177 88781938 0.000000e+00 1114
5 TraesCS5B01G074600 chr5B 91.545 686 36 8 13 679 88778566 88779248 0.000000e+00 926
6 TraesCS5B01G074600 chr5B 93.458 214 12 2 3564 3776 492838421 492838633 2.190000e-82 316
7 TraesCS5B01G074600 chr5B 83.051 118 11 8 2777 2893 88782198 88782307 8.630000e-17 99
8 TraesCS5B01G074600 chr5A 90.061 2797 197 30 54 2793 75047931 75050703 0.000000e+00 3550
9 TraesCS5B01G074600 chr5A 94.194 310 12 3 2971 3280 573303717 573304020 5.710000e-128 468
10 TraesCS5B01G074600 chr5A 94.211 190 9 2 3281 3470 576587852 576587665 4.770000e-74 289
11 TraesCS5B01G074600 chr5A 86.014 143 20 0 1225 1367 34903679 34903821 1.820000e-33 154
12 TraesCS5B01G074600 chr5D 97.035 1619 47 1 1662 3280 79105721 79107338 0.000000e+00 2723
13 TraesCS5B01G074600 chr5D 92.539 697 31 5 1 679 79136638 79137331 0.000000e+00 979
14 TraesCS5B01G074600 chr5D 91.857 700 51 2 2023 2716 79140013 79140712 0.000000e+00 972
15 TraesCS5B01G074600 chr5D 83.366 1010 104 35 673 1668 79104616 79105575 0.000000e+00 876
16 TraesCS5B01G074600 chr5D 85.987 785 66 20 674 1448 79137526 79138276 0.000000e+00 800
17 TraesCS5B01G074600 chr5D 95.167 269 13 0 3281 3549 79107475 79107743 3.490000e-115 425
18 TraesCS5B01G074600 chr5D 76.333 469 87 15 2155 2610 76754332 76753875 2.930000e-56 230
19 TraesCS5B01G074600 chr5D 76.119 469 88 15 2155 2610 76690088 76689631 1.360000e-54 224
20 TraesCS5B01G074600 chr5D 91.150 113 9 1 2718 2829 79149610 79149722 6.530000e-33 152
21 TraesCS5B01G074600 chr5D 86.364 132 11 4 309 438 79104239 79104365 1.830000e-28 137
22 TraesCS5B01G074600 chrUn 91.894 1283 77 11 747 2017 227383814 227382547 0.000000e+00 1768
23 TraesCS5B01G074600 chrUn 91.837 686 34 8 13 679 227384939 227384257 0.000000e+00 937
24 TraesCS5B01G074600 chrUn 94.118 306 15 2 2975 3280 1908522 1908220 2.660000e-126 462
25 TraesCS5B01G074600 chrUn 94.737 228 7 1 3549 3776 61823217 61822995 2.160000e-92 350
26 TraesCS5B01G074600 chrUn 96.842 190 5 1 3281 3470 1908083 1907895 2.190000e-82 316
27 TraesCS5B01G074600 chrUn 93.714 175 11 0 3550 3724 112970227 112970053 2.890000e-66 263
28 TraesCS5B01G074600 chrUn 86.842 152 20 0 1225 1376 65786916 65786765 1.800000e-38 171
29 TraesCS5B01G074600 chrUn 92.308 104 7 1 13 115 241181675 241181778 3.040000e-31 147
30 TraesCS5B01G074600 chrUn 83.051 118 11 8 2777 2893 228573263 228573372 8.630000e-17 99
31 TraesCS5B01G074600 chrUn 83.051 118 11 8 2777 2893 330649582 330649473 8.630000e-17 99
32 TraesCS5B01G074600 chr1A 93.571 871 42 4 2065 2934 475710330 475711187 0.000000e+00 1286
33 TraesCS5B01G074600 chr1A 94.550 734 33 2 2202 2934 475616063 475616790 0.000000e+00 1127
34 TraesCS5B01G074600 chr1A 87.273 825 77 11 1013 1831 475709382 475710184 0.000000e+00 917
35 TraesCS5B01G074600 chr1A 95.793 309 12 1 2972 3280 300564432 300564739 7.280000e-137 497
36 TraesCS5B01G074600 chr1A 95.789 190 7 1 3281 3470 300564876 300565064 4.740000e-79 305
37 TraesCS5B01G074600 chr1A 94.149 188 10 1 3281 3468 392498856 392498670 6.170000e-73 285
38 TraesCS5B01G074600 chr1A 94.149 188 10 1 3281 3468 469308052 469307866 6.170000e-73 285
39 TraesCS5B01G074600 chr1A 97.297 148 4 0 1881 2028 475710185 475710332 6.260000e-63 252
40 TraesCS5B01G074600 chr1A 87.850 107 13 0 835 941 475708181 475708287 3.960000e-25 126
41 TraesCS5B01G074600 chr7A 96.104 308 10 2 2974 3280 47035515 47035821 5.630000e-138 501
42 TraesCS5B01G074600 chr7A 95.410 305 12 2 2976 3280 404469711 404470013 5.670000e-133 484
43 TraesCS5B01G074600 chr7A 93.791 306 18 1 2975 3280 211718873 211719177 3.440000e-125 459
44 TraesCS5B01G074600 chr7A 94.681 188 9 1 3281 3468 47043891 47044077 1.330000e-74 291
45 TraesCS5B01G074600 chr7A 90.960 177 14 1 3550 3724 696175927 696175751 1.750000e-58 237
46 TraesCS5B01G074600 chr7D 95.440 307 13 1 2974 3280 16327292 16327597 4.380000e-134 488
47 TraesCS5B01G074600 chr2D 93.910 312 16 3 2971 3280 44895718 44896028 5.710000e-128 468
48 TraesCS5B01G074600 chr2D 94.737 190 9 1 3281 3470 44896165 44896353 1.030000e-75 294
49 TraesCS5B01G074600 chr6B 96.035 227 6 2 3550 3776 118071589 118071366 2.140000e-97 366
50 TraesCS5B01G074600 chr3B 96.035 227 4 1 3550 3776 748458762 748458983 7.710000e-97 364
51 TraesCS5B01G074600 chr3A 95.213 188 8 1 3281 3468 508533010 508533196 2.850000e-76 296
52 TraesCS5B01G074600 chr3A 92.737 179 12 1 3546 3724 708000728 708000551 1.350000e-64 257
53 TraesCS5B01G074600 chr6A 93.143 175 12 0 3550 3724 88591638 88591464 1.350000e-64 257
54 TraesCS5B01G074600 chr6A 93.865 163 10 0 3562 3724 22255039 22255201 2.910000e-61 246
55 TraesCS5B01G074600 chr3D 89.831 59 4 2 300 358 361382038 361382094 1.450000e-09 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G074600 chr5B 88735362 88739137 3775 False 6974.00 6974 100.000000 1 3776 1 chr5B.!!$F1 3775
1 TraesCS5B01G074600 chr5B 88704096 88706740 2644 False 1529.00 1663 89.405000 306 2978 2 chr5B.!!$F3 2672
2 TraesCS5B01G074600 chr5B 88778566 88782307 3741 False 976.75 1768 89.916500 13 2893 4 chr5B.!!$F4 2880
3 TraesCS5B01G074600 chr5A 75047931 75050703 2772 False 3550.00 3550 90.061000 54 2793 1 chr5A.!!$F2 2739
4 TraesCS5B01G074600 chr5D 79104239 79107743 3504 False 1040.25 2723 90.483000 309 3549 4 chr5D.!!$F2 3240
5 TraesCS5B01G074600 chr5D 79136638 79140712 4074 False 917.00 979 90.127667 1 2716 3 chr5D.!!$F3 2715
6 TraesCS5B01G074600 chrUn 227382547 227384939 2392 True 1352.50 1768 91.865500 13 2017 2 chrUn.!!$R6 2004
7 TraesCS5B01G074600 chrUn 1907895 1908522 627 True 389.00 462 95.480000 2975 3470 2 chrUn.!!$R5 495
8 TraesCS5B01G074600 chr1A 475616063 475616790 727 False 1127.00 1127 94.550000 2202 2934 1 chr1A.!!$F1 732
9 TraesCS5B01G074600 chr1A 475708181 475711187 3006 False 645.25 1286 91.497750 835 2934 4 chr1A.!!$F3 2099
10 TraesCS5B01G074600 chr1A 300564432 300565064 632 False 401.00 497 95.791000 2972 3470 2 chr1A.!!$F2 498
11 TraesCS5B01G074600 chr2D 44895718 44896353 635 False 381.00 468 94.323500 2971 3470 2 chr2D.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
635 676 0.251653 AGTGGGGCTAGAACTGTCGA 60.252 55.0 0.0 0.0 0.0 4.20 F
1286 2872 0.624795 AATCTCCCTTCTCCCCACCC 60.625 60.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2624 5957 0.102481 ATTCATAGCGTCGCTCCGTT 59.898 50.000 25.50 1.33 40.44 4.44 R
2910 6503 2.606587 CCCTGCAGTAACCCAGGCT 61.607 63.158 13.81 0.00 45.75 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 71 1.134128 ACCCATGCGATGTATGCAGAA 60.134 47.619 0.00 0.00 46.98 3.02
127 129 3.361158 CGGACCACAAATGCGCCA 61.361 61.111 4.18 0.00 0.00 5.69
186 188 7.603404 TGTGTACCGCAAGTTATAACAGTAAAT 59.397 33.333 17.65 2.15 0.00 1.40
187 189 8.112449 GTGTACCGCAAGTTATAACAGTAAATC 58.888 37.037 17.65 3.12 0.00 2.17
191 193 7.279313 ACCGCAAGTTATAACAGTAAATCGATT 59.721 33.333 17.65 4.39 0.00 3.34
580 620 0.793250 GCCTCTGTCAAAACTCTCGC 59.207 55.000 0.00 0.00 0.00 5.03
635 676 0.251653 AGTGGGGCTAGAACTGTCGA 60.252 55.000 0.00 0.00 0.00 4.20
699 1150 3.449227 CTGTCCCGTCAGCCGCTA 61.449 66.667 0.00 0.00 34.38 4.26
723 1180 2.111043 AAGTCTGGCGGTGTGGTG 59.889 61.111 0.00 0.00 0.00 4.17
866 1371 7.138054 AGATTTTATAGGACCGAGAACCAAT 57.862 36.000 0.00 0.00 0.00 3.16
943 2477 5.689068 CCGACAGTTTCCTATTTATACGGTC 59.311 44.000 0.00 0.00 32.85 4.79
989 2550 3.201290 CAGCACACAGAAACACTCTCTT 58.799 45.455 0.00 0.00 29.07 2.85
994 2555 3.134458 CACAGAAACACTCTCTTCCCAC 58.866 50.000 0.00 0.00 29.07 4.61
1213 2799 2.586357 GGCAGATCGGGCGAAGAC 60.586 66.667 3.22 0.00 0.00 3.01
1249 2835 4.154347 CTCAGCAGCCTCCCCGAC 62.154 72.222 0.00 0.00 0.00 4.79
1276 2862 3.117093 TCCTCGGTGAGATAATCTCCCTT 60.117 47.826 0.00 0.00 42.73 3.95
1286 2872 0.624795 AATCTCCCTTCTCCCCACCC 60.625 60.000 0.00 0.00 0.00 4.61
1294 2880 3.260100 CTCCCCACCCAGCAAGGT 61.260 66.667 0.00 0.00 42.40 3.50
1355 2941 4.443266 GCTCCGCGCCTCTGAACT 62.443 66.667 0.00 0.00 0.00 3.01
1407 2999 1.336632 GGACTCCCTGCTCTCATGCT 61.337 60.000 0.00 0.00 0.00 3.79
1456 3048 4.680237 CGCCGCTTCTCCACACCA 62.680 66.667 0.00 0.00 0.00 4.17
1497 3089 1.135139 CGATATAGATGCCGTGGAGGG 59.865 57.143 0.00 0.00 41.48 4.30
1529 3121 3.922640 CCGCTCTGGCTAGGCTCC 61.923 72.222 18.18 0.00 36.09 4.70
1563 3284 4.834453 CAGCTGGAGAGGGCAGCG 62.834 72.222 5.57 0.00 45.71 5.18
1579 3300 4.218722 CGGCTGCCGGAATTAGTT 57.781 55.556 32.37 0.00 44.15 2.24
1627 3634 2.176546 CGCATTGAACGGTGCAGG 59.823 61.111 0.00 0.00 41.32 4.85
1660 3667 4.485163 CCACCGTCCAAAGATTTCATTTC 58.515 43.478 0.00 0.00 0.00 2.17
1663 3670 3.763897 CCGTCCAAAGATTTCATTTCCCT 59.236 43.478 0.00 0.00 0.00 4.20
1769 3930 1.529826 GCTTGCTAATTTCTCGGTGCG 60.530 52.381 0.00 0.00 0.00 5.34
1814 3975 2.550830 TTCACTTGTCCTCAGAAGCC 57.449 50.000 0.00 0.00 0.00 4.35
1842 4006 5.124457 CAGTCAGAAATTATTCACTGGGTGG 59.876 44.000 10.41 0.00 38.06 4.61
1843 4007 5.014123 AGTCAGAAATTATTCACTGGGTGGA 59.986 40.000 10.41 0.00 38.06 4.02
1844 4008 5.355350 GTCAGAAATTATTCACTGGGTGGAG 59.645 44.000 10.41 0.00 38.06 3.86
2056 5377 6.769822 TCCTTACCGTCGAGACTTCTAATAAT 59.230 38.462 0.00 0.00 0.00 1.28
2408 5735 4.088638 CGTCATAAATACCGCGATCTTCTG 59.911 45.833 8.23 0.00 0.00 3.02
2411 5738 5.920840 TCATAAATACCGCGATCTTCTGAAG 59.079 40.000 8.23 11.18 0.00 3.02
2424 5751 6.602410 ATCTTCTGAAGAGTCTTGACATCA 57.398 37.500 23.04 0.32 41.61 3.07
2425 5752 6.602410 TCTTCTGAAGAGTCTTGACATCAT 57.398 37.500 15.82 0.00 32.71 2.45
2558 5891 2.681848 GACCGACGATGAGGACTTCTTA 59.318 50.000 0.00 0.00 0.00 2.10
2624 5957 1.606668 GGTGCTCGGTTTCATTTCACA 59.393 47.619 0.00 0.00 0.00 3.58
2639 5972 1.516386 CACAACGGAGCGACGCTAT 60.516 57.895 24.55 8.73 39.88 2.97
2859 6452 7.851387 TTGCGGTCATTACTTATTATTGTCA 57.149 32.000 0.00 0.00 0.00 3.58
2910 6503 3.932545 AAAATTAGTTGCATGCGTGGA 57.067 38.095 14.09 0.81 0.00 4.02
2955 6548 3.181448 GGGGTAGTTTTGTGGAAGAGTGA 60.181 47.826 0.00 0.00 0.00 3.41
3076 6669 4.164843 AGACAACCTAAGTTTTCCAGCA 57.835 40.909 0.00 0.00 33.90 4.41
3436 7167 7.552687 TGTGGTAAGTCTAAATTTGGCATAGAG 59.447 37.037 0.00 0.00 0.00 2.43
3460 7191 2.756760 CCATTTGCACAAGCCACTAGAT 59.243 45.455 0.00 0.00 41.13 1.98
3472 7203 6.933521 ACAAGCCACTAGATATGCTCTAATTG 59.066 38.462 0.00 0.00 36.02 2.32
3505 7236 0.645355 CACGGCAAGCATGTAGTACG 59.355 55.000 0.00 0.00 0.00 3.67
3511 7242 4.269123 CGGCAAGCATGTAGTACGAAATAA 59.731 41.667 0.00 0.00 0.00 1.40
3518 7249 6.096423 AGCATGTAGTACGAAATAACCTGAGA 59.904 38.462 0.00 0.00 0.00 3.27
3543 7274 2.126346 GCATTTGTCTGCGCACCC 60.126 61.111 5.66 0.00 31.49 4.61
3549 7280 2.594592 GTCTGCGCACCCAAGGTT 60.595 61.111 5.66 0.00 31.02 3.50
3550 7281 1.302192 GTCTGCGCACCCAAGGTTA 60.302 57.895 5.66 0.00 31.02 2.85
3551 7282 1.003839 TCTGCGCACCCAAGGTTAG 60.004 57.895 5.66 0.00 31.02 2.34
3552 7283 2.033448 TGCGCACCCAAGGTTAGG 59.967 61.111 5.66 0.00 31.02 2.69
3558 7289 3.835134 CCCAAGGTTAGGGCTGGA 58.165 61.111 0.00 0.00 39.96 3.86
3559 7290 1.303282 CCCAAGGTTAGGGCTGGAC 59.697 63.158 0.00 0.00 39.96 4.02
3560 7291 1.497309 CCCAAGGTTAGGGCTGGACA 61.497 60.000 0.00 0.00 39.96 4.02
3561 7292 0.322546 CCAAGGTTAGGGCTGGACAC 60.323 60.000 0.00 0.00 0.00 3.67
3562 7293 0.673644 CAAGGTTAGGGCTGGACACG 60.674 60.000 0.00 0.00 0.00 4.49
3563 7294 0.834687 AAGGTTAGGGCTGGACACGA 60.835 55.000 0.00 0.00 0.00 4.35
3564 7295 1.218316 GGTTAGGGCTGGACACGAG 59.782 63.158 0.00 0.00 0.00 4.18
3565 7296 1.448013 GTTAGGGCTGGACACGAGC 60.448 63.158 0.00 0.00 35.57 5.03
3569 7300 4.803426 GGCTGGACACGAGCCGAG 62.803 72.222 8.81 0.00 46.47 4.63
3571 7302 4.803426 CTGGACACGAGCCGAGCC 62.803 72.222 1.50 1.42 0.00 4.70
3574 7305 4.838486 GACACGAGCCGAGCCGAG 62.838 72.222 11.42 7.65 0.00 4.63
3586 7317 2.964389 GCCGAGGCGAGCTTGATC 60.964 66.667 4.70 0.62 0.00 2.92
3587 7318 2.279784 CCGAGGCGAGCTTGATCC 60.280 66.667 4.70 0.00 0.00 3.36
3588 7319 2.656651 CGAGGCGAGCTTGATCCG 60.657 66.667 4.70 0.00 0.00 4.18
3589 7320 2.808315 GAGGCGAGCTTGATCCGA 59.192 61.111 4.70 0.00 0.00 4.55
3590 7321 1.299773 GAGGCGAGCTTGATCCGAG 60.300 63.158 4.70 0.00 0.00 4.63
3591 7322 2.964389 GGCGAGCTTGATCCGAGC 60.964 66.667 4.70 9.51 40.93 5.03
3592 7323 2.964389 GCGAGCTTGATCCGAGCC 60.964 66.667 4.70 5.86 41.50 4.70
3593 7324 2.811101 CGAGCTTGATCCGAGCCT 59.189 61.111 12.94 3.24 41.50 4.58
3594 7325 1.591059 CGAGCTTGATCCGAGCCTG 60.591 63.158 12.94 4.38 41.50 4.85
3595 7326 1.886777 GAGCTTGATCCGAGCCTGC 60.887 63.158 12.94 2.38 41.50 4.85
3596 7327 2.899339 GCTTGATCCGAGCCTGCC 60.899 66.667 6.87 0.00 35.00 4.85
3597 7328 2.906458 CTTGATCCGAGCCTGCCT 59.094 61.111 0.00 0.00 0.00 4.75
3598 7329 1.222936 CTTGATCCGAGCCTGCCTT 59.777 57.895 0.00 0.00 0.00 4.35
3599 7330 0.393537 CTTGATCCGAGCCTGCCTTT 60.394 55.000 0.00 0.00 0.00 3.11
3600 7331 0.677731 TTGATCCGAGCCTGCCTTTG 60.678 55.000 0.00 0.00 0.00 2.77
3601 7332 1.221840 GATCCGAGCCTGCCTTTGA 59.778 57.895 0.00 0.00 0.00 2.69
3602 7333 1.078143 ATCCGAGCCTGCCTTTGAC 60.078 57.895 0.00 0.00 0.00 3.18
3603 7334 1.557269 ATCCGAGCCTGCCTTTGACT 61.557 55.000 0.00 0.00 0.00 3.41
3604 7335 1.743252 CCGAGCCTGCCTTTGACTC 60.743 63.158 0.00 0.00 0.00 3.36
3605 7336 2.097038 CGAGCCTGCCTTTGACTCG 61.097 63.158 0.00 0.00 43.46 4.18
3606 7337 2.359230 AGCCTGCCTTTGACTCGC 60.359 61.111 0.00 0.00 0.00 5.03
3607 7338 3.435186 GCCTGCCTTTGACTCGCC 61.435 66.667 0.00 0.00 0.00 5.54
3608 7339 2.032528 CCTGCCTTTGACTCGCCA 59.967 61.111 0.00 0.00 0.00 5.69
3609 7340 1.377725 CCTGCCTTTGACTCGCCAT 60.378 57.895 0.00 0.00 0.00 4.40
3610 7341 1.651240 CCTGCCTTTGACTCGCCATG 61.651 60.000 0.00 0.00 0.00 3.66
3611 7342 0.674581 CTGCCTTTGACTCGCCATGA 60.675 55.000 0.00 0.00 0.00 3.07
3612 7343 0.250684 TGCCTTTGACTCGCCATGAA 60.251 50.000 0.00 0.00 0.00 2.57
3613 7344 1.098050 GCCTTTGACTCGCCATGAAT 58.902 50.000 0.00 0.00 0.00 2.57
3614 7345 1.202222 GCCTTTGACTCGCCATGAATG 60.202 52.381 0.00 0.00 0.00 2.67
3615 7346 2.358957 CCTTTGACTCGCCATGAATGA 58.641 47.619 0.00 0.00 0.00 2.57
3616 7347 2.353889 CCTTTGACTCGCCATGAATGAG 59.646 50.000 0.00 0.49 35.85 2.90
3617 7348 1.372582 TTGACTCGCCATGAATGAGC 58.627 50.000 0.00 0.00 32.98 4.26
3618 7349 0.538584 TGACTCGCCATGAATGAGCT 59.461 50.000 0.00 0.00 32.98 4.09
3619 7350 1.756538 TGACTCGCCATGAATGAGCTA 59.243 47.619 0.00 0.00 32.98 3.32
3620 7351 2.168313 TGACTCGCCATGAATGAGCTAA 59.832 45.455 0.00 0.00 32.98 3.09
3621 7352 2.799412 GACTCGCCATGAATGAGCTAAG 59.201 50.000 0.00 0.00 32.98 2.18
3622 7353 1.530293 CTCGCCATGAATGAGCTAAGC 59.470 52.381 0.00 0.00 0.00 3.09
3623 7354 1.139654 TCGCCATGAATGAGCTAAGCT 59.860 47.619 0.00 0.00 43.88 3.74
3631 7362 2.026879 GAGCTAAGCTCGGCTCGG 59.973 66.667 20.04 0.00 45.85 4.63
3632 7363 4.214327 AGCTAAGCTCGGCTCGGC 62.214 66.667 7.46 11.83 38.25 5.54
3633 7364 4.214327 GCTAAGCTCGGCTCGGCT 62.214 66.667 12.22 5.30 38.25 5.52
3634 7365 2.026879 CTAAGCTCGGCTCGGCTC 59.973 66.667 9.59 0.00 38.25 4.70
3635 7366 3.815569 CTAAGCTCGGCTCGGCTCG 62.816 68.421 9.59 0.00 38.25 5.03
3650 7381 4.415332 TCGCTGGTCGAACGAGCC 62.415 66.667 20.49 13.89 45.48 4.70
3651 7382 4.421479 CGCTGGTCGAACGAGCCT 62.421 66.667 20.49 0.00 45.48 4.58
3652 7383 2.811317 GCTGGTCGAACGAGCCTG 60.811 66.667 20.49 16.40 43.00 4.85
3653 7384 2.125912 CTGGTCGAACGAGCCTGG 60.126 66.667 20.49 9.41 41.45 4.45
3654 7385 2.915659 TGGTCGAACGAGCCTGGT 60.916 61.111 20.49 0.00 41.45 4.00
3655 7386 2.342648 GGTCGAACGAGCCTGGTT 59.657 61.111 14.14 0.00 36.72 3.67
3656 7387 1.301479 GGTCGAACGAGCCTGGTTT 60.301 57.895 14.14 0.00 36.72 3.27
3657 7388 0.883370 GGTCGAACGAGCCTGGTTTT 60.883 55.000 14.14 0.00 36.72 2.43
3658 7389 0.234884 GTCGAACGAGCCTGGTTTTG 59.765 55.000 0.00 0.00 0.00 2.44
3659 7390 0.882927 TCGAACGAGCCTGGTTTTGG 60.883 55.000 0.00 0.00 0.00 3.28
3660 7391 0.882927 CGAACGAGCCTGGTTTTGGA 60.883 55.000 0.00 0.00 0.00 3.53
3661 7392 0.875059 GAACGAGCCTGGTTTTGGAG 59.125 55.000 0.00 0.00 0.00 3.86
3662 7393 0.537371 AACGAGCCTGGTTTTGGAGG 60.537 55.000 0.00 0.00 0.00 4.30
3666 7397 3.987404 CCTGGTTTTGGAGGCTCG 58.013 61.111 8.69 0.00 0.00 5.03
3667 7398 1.675641 CCTGGTTTTGGAGGCTCGG 60.676 63.158 8.69 0.00 0.00 4.63
3668 7399 2.282180 TGGTTTTGGAGGCTCGGC 60.282 61.111 8.69 0.00 0.00 5.54
3669 7400 2.034221 GGTTTTGGAGGCTCGGCT 59.966 61.111 8.69 0.00 0.00 5.52
3670 7401 2.041115 GGTTTTGGAGGCTCGGCTC 61.041 63.158 8.69 11.63 0.00 4.70
3671 7402 2.047274 TTTTGGAGGCTCGGCTCG 60.047 61.111 8.69 0.00 0.00 5.03
3672 7403 2.879233 TTTTGGAGGCTCGGCTCGT 61.879 57.895 8.69 0.00 0.00 4.18
3673 7404 2.781595 TTTTGGAGGCTCGGCTCGTC 62.782 60.000 8.69 2.72 0.00 4.20
3674 7405 4.742649 TGGAGGCTCGGCTCGTCT 62.743 66.667 8.69 0.00 0.00 4.18
3675 7406 3.453679 GGAGGCTCGGCTCGTCTT 61.454 66.667 8.69 0.00 0.00 3.01
3676 7407 2.202676 GAGGCTCGGCTCGTCTTG 60.203 66.667 0.00 0.00 0.00 3.02
3677 7408 4.443266 AGGCTCGGCTCGTCTTGC 62.443 66.667 0.00 0.00 0.00 4.01
3683 7414 2.125350 GGCTCGTCTTGCCTCTGG 60.125 66.667 0.00 0.00 46.38 3.86
3693 7424 2.125350 GCCTCTGGCTCGGTTCAG 60.125 66.667 0.73 0.00 46.69 3.02
3694 7425 2.581354 CCTCTGGCTCGGTTCAGG 59.419 66.667 0.00 0.00 0.00 3.86
3695 7426 2.125350 CTCTGGCTCGGTTCAGGC 60.125 66.667 0.00 0.00 39.44 4.85
3696 7427 3.672295 CTCTGGCTCGGTTCAGGCC 62.672 68.421 0.00 0.00 45.45 5.19
3722 7453 4.015406 CGTGGGTGCCCTGCTGTA 62.015 66.667 8.91 0.00 36.94 2.74
3723 7454 2.677228 GTGGGTGCCCTGCTGTAT 59.323 61.111 8.91 0.00 36.94 2.29
3724 7455 1.000896 GTGGGTGCCCTGCTGTATT 60.001 57.895 8.91 0.00 36.94 1.89
3725 7456 0.611896 GTGGGTGCCCTGCTGTATTT 60.612 55.000 8.91 0.00 36.94 1.40
3726 7457 0.995803 TGGGTGCCCTGCTGTATTTA 59.004 50.000 8.91 0.00 36.94 1.40
3727 7458 1.568597 TGGGTGCCCTGCTGTATTTAT 59.431 47.619 8.91 0.00 36.94 1.40
3728 7459 2.024464 TGGGTGCCCTGCTGTATTTATT 60.024 45.455 8.91 0.00 36.94 1.40
3729 7460 3.031013 GGGTGCCCTGCTGTATTTATTT 58.969 45.455 0.00 0.00 0.00 1.40
3730 7461 4.211920 GGGTGCCCTGCTGTATTTATTTA 58.788 43.478 0.00 0.00 0.00 1.40
3731 7462 4.832823 GGGTGCCCTGCTGTATTTATTTAT 59.167 41.667 0.00 0.00 0.00 1.40
3732 7463 5.304357 GGGTGCCCTGCTGTATTTATTTATT 59.696 40.000 0.00 0.00 0.00 1.40
3733 7464 6.183360 GGGTGCCCTGCTGTATTTATTTATTT 60.183 38.462 0.00 0.00 0.00 1.40
3734 7465 7.272244 GGTGCCCTGCTGTATTTATTTATTTT 58.728 34.615 0.00 0.00 0.00 1.82
3735 7466 7.768582 GGTGCCCTGCTGTATTTATTTATTTTT 59.231 33.333 0.00 0.00 0.00 1.94
3756 7487 3.560251 ACGGAAGTGCCCTGCTGT 61.560 61.111 0.00 0.00 46.97 4.40
3757 7488 2.214216 ACGGAAGTGCCCTGCTGTA 61.214 57.895 0.00 0.00 46.97 2.74
3758 7489 1.221840 CGGAAGTGCCCTGCTGTAT 59.778 57.895 0.00 0.00 0.00 2.29
3759 7490 1.091771 CGGAAGTGCCCTGCTGTATG 61.092 60.000 0.00 0.00 0.00 2.39
3760 7491 0.749454 GGAAGTGCCCTGCTGTATGG 60.749 60.000 0.00 0.00 0.00 2.74
3761 7492 0.749454 GAAGTGCCCTGCTGTATGGG 60.749 60.000 0.00 0.00 46.00 4.00
3762 7493 1.500783 AAGTGCCCTGCTGTATGGGT 61.501 55.000 0.00 0.00 45.06 4.51
3763 7494 1.750399 GTGCCCTGCTGTATGGGTG 60.750 63.158 0.00 0.00 45.06 4.61
3764 7495 2.830370 GCCCTGCTGTATGGGTGC 60.830 66.667 0.00 0.00 45.06 5.01
3765 7496 2.514592 CCCTGCTGTATGGGTGCG 60.515 66.667 0.00 0.00 38.65 5.34
3766 7497 3.204827 CCTGCTGTATGGGTGCGC 61.205 66.667 0.00 0.00 0.00 6.09
3767 7498 3.566853 CTGCTGTATGGGTGCGCG 61.567 66.667 0.00 0.00 0.00 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.023980 CTGTCAGGATTGTAGGTGGTCTA 58.976 47.826 0.00 0.00 0.00 2.59
31 32 1.906574 GGTCCACCTGTCAGGATTGTA 59.093 52.381 26.18 0.00 37.67 2.41
32 33 0.693049 GGTCCACCTGTCAGGATTGT 59.307 55.000 26.18 0.00 37.67 2.71
69 71 1.346395 TGGCGCCGTATTTCCATCTAT 59.654 47.619 23.90 0.00 0.00 1.98
127 129 8.530311 TGATACAAAACCTTGACATGCAAATAT 58.470 29.630 0.00 0.00 35.74 1.28
186 188 0.665835 AACTTGGCGCAAACAATCGA 59.334 45.000 10.83 0.00 0.00 3.59
187 189 1.052287 GAACTTGGCGCAAACAATCG 58.948 50.000 10.83 0.00 0.00 3.34
191 193 0.527385 GCTTGAACTTGGCGCAAACA 60.527 50.000 10.83 0.00 0.00 2.83
225 227 0.459078 GAAGCCCCCTACACGAGTAC 59.541 60.000 0.00 0.00 0.00 2.73
300 303 9.793259 TTAACATTGGAAAAGAGAGAGTTGTAT 57.207 29.630 0.00 0.00 0.00 2.29
440 458 1.339151 ACCTTCCTCTCCAACAATCGC 60.339 52.381 0.00 0.00 0.00 4.58
580 620 2.948979 TGGACAACAGCAACTTTGTAGG 59.051 45.455 0.00 0.00 36.06 3.18
723 1180 2.917971 CTGTTCGTCTTCATTCTCCGTC 59.082 50.000 0.00 0.00 0.00 4.79
880 1385 0.235144 CGGCGTAGATACTGTCCGAG 59.765 60.000 0.00 0.00 39.23 4.63
943 2477 0.525668 CGATGACGGAGGAAGGAACG 60.526 60.000 0.00 0.00 35.72 3.95
989 2550 1.708993 AAGCAGGCTTGTCTGTGGGA 61.709 55.000 5.60 0.00 37.12 4.37
994 2555 3.571119 CCGAAGCAGGCTTGTCTG 58.429 61.111 11.85 0.00 36.26 3.51
1188 2774 4.933064 CCGATCTGCCTCCGTCGC 62.933 72.222 0.00 0.00 33.06 5.19
1199 2785 2.439701 TCCGTCTTCGCCCGATCT 60.440 61.111 0.00 0.00 35.54 2.75
1218 2804 1.652012 CTGAGCCGGTCGAGATCTC 59.348 63.158 13.05 13.05 0.00 2.75
1276 2862 2.935481 CCTTGCTGGGTGGGGAGA 60.935 66.667 0.00 0.00 0.00 3.71
1294 2880 1.144716 GAGGATCATGGTGCGAGCA 59.855 57.895 0.00 0.00 33.17 4.26
1342 2928 2.126463 TCGAAGTTCAGAGGCGCG 60.126 61.111 0.00 0.00 0.00 6.86
1348 2934 0.039437 GACGGCAGTCGAAGTTCAGA 60.039 55.000 0.00 0.00 42.43 3.27
1386 2978 0.464870 CATGAGAGCAGGGAGTCCAG 59.535 60.000 12.30 3.84 34.83 3.86
1389 2981 0.179078 CAGCATGAGAGCAGGGAGTC 60.179 60.000 0.00 0.00 39.69 3.36
1497 3089 3.775654 CGGGGGACAGGAGACAGC 61.776 72.222 0.00 0.00 0.00 4.40
1563 3284 1.134367 GGAAAACTAATTCCGGCAGCC 59.866 52.381 0.00 0.00 39.54 4.85
1769 3930 2.047179 GAGGCAACGAGGTCCACC 60.047 66.667 0.00 0.00 46.39 4.61
1814 3975 7.607991 ACCCAGTGAATAATTTCTGACTGTAAG 59.392 37.037 0.00 0.00 35.57 2.34
1842 4006 4.932200 CGATTTCCTCTAATATGGGTGCTC 59.068 45.833 0.00 0.00 0.00 4.26
1843 4007 4.348168 ACGATTTCCTCTAATATGGGTGCT 59.652 41.667 0.00 0.00 0.00 4.40
1844 4008 4.642429 ACGATTTCCTCTAATATGGGTGC 58.358 43.478 0.00 0.00 0.00 5.01
2056 5377 4.096833 GCACATTGCACATAGAGATGGAAA 59.903 41.667 0.00 0.00 44.26 3.13
2425 5752 9.829507 AACAATTCAACACCATAATTTTCAGAA 57.170 25.926 0.00 0.00 0.00 3.02
2558 5891 1.684983 AGCTTGTGATGCTGTTTTGCT 59.315 42.857 0.00 0.00 39.56 3.91
2624 5957 0.102481 ATTCATAGCGTCGCTCCGTT 59.898 50.000 25.50 1.33 40.44 4.44
2897 6490 3.058160 AGGCTCCACGCATGCAAC 61.058 61.111 19.57 0.00 41.67 4.17
2910 6503 2.606587 CCCTGCAGTAACCCAGGCT 61.607 63.158 13.81 0.00 45.75 4.58
2955 6548 8.523658 GCTCTTACAATCCAGGTTTAGAAAATT 58.476 33.333 0.00 0.00 0.00 1.82
2988 6581 7.158099 ACTATCAAATTTAGACAAAGCCACC 57.842 36.000 0.00 0.00 0.00 4.61
3460 7191 9.166173 GACATATAATGCCACAATTAGAGCATA 57.834 33.333 8.24 0.00 44.87 3.14
3472 7203 2.217750 TGCCGTGACATATAATGCCAC 58.782 47.619 0.00 0.00 39.82 5.01
3505 7236 3.935828 GCAGACCAGTCTCAGGTTATTTC 59.064 47.826 0.00 0.00 40.09 2.17
3511 7242 1.356124 AATGCAGACCAGTCTCAGGT 58.644 50.000 0.00 0.00 43.46 4.00
3518 7249 1.242076 GCAGACAAATGCAGACCAGT 58.758 50.000 0.00 0.00 45.77 4.00
3543 7274 0.673644 CGTGTCCAGCCCTAACCTTG 60.674 60.000 0.00 0.00 0.00 3.61
3554 7285 4.803426 GGCTCGGCTCGTGTCCAG 62.803 72.222 0.00 0.00 0.00 3.86
3557 7288 4.838486 CTCGGCTCGGCTCGTGTC 62.838 72.222 0.00 0.00 0.00 3.67
3567 7298 3.438017 ATCAAGCTCGCCTCGGCTC 62.438 63.158 6.35 0.00 37.87 4.70
3568 7299 3.438017 GATCAAGCTCGCCTCGGCT 62.438 63.158 6.35 0.00 40.85 5.52
3569 7300 2.964389 GATCAAGCTCGCCTCGGC 60.964 66.667 0.00 0.00 37.85 5.54
3570 7301 2.279784 GGATCAAGCTCGCCTCGG 60.280 66.667 0.00 0.00 0.00 4.63
3571 7302 2.656651 CGGATCAAGCTCGCCTCG 60.657 66.667 0.00 0.00 0.00 4.63
3572 7303 1.299773 CTCGGATCAAGCTCGCCTC 60.300 63.158 0.00 0.00 0.00 4.70
3573 7304 2.811101 CTCGGATCAAGCTCGCCT 59.189 61.111 0.00 0.00 0.00 5.52
3574 7305 2.964389 GCTCGGATCAAGCTCGCC 60.964 66.667 11.07 0.00 36.80 5.54
3575 7306 2.964389 GGCTCGGATCAAGCTCGC 60.964 66.667 16.23 4.30 39.75 5.03
3576 7307 1.591059 CAGGCTCGGATCAAGCTCG 60.591 63.158 16.23 1.18 39.75 5.03
3577 7308 1.886777 GCAGGCTCGGATCAAGCTC 60.887 63.158 16.23 8.68 39.75 4.09
3578 7309 2.188994 GCAGGCTCGGATCAAGCT 59.811 61.111 16.23 3.42 39.75 3.74
3579 7310 2.883267 AAGGCAGGCTCGGATCAAGC 62.883 60.000 10.12 10.12 39.09 4.01
3580 7311 0.393537 AAAGGCAGGCTCGGATCAAG 60.394 55.000 0.00 0.00 0.00 3.02
3581 7312 0.677731 CAAAGGCAGGCTCGGATCAA 60.678 55.000 0.00 0.00 0.00 2.57
3582 7313 1.078214 CAAAGGCAGGCTCGGATCA 60.078 57.895 0.00 0.00 0.00 2.92
3583 7314 1.092345 GTCAAAGGCAGGCTCGGATC 61.092 60.000 0.00 0.00 0.00 3.36
3584 7315 1.078143 GTCAAAGGCAGGCTCGGAT 60.078 57.895 0.00 0.00 0.00 4.18
3585 7316 2.172483 GAGTCAAAGGCAGGCTCGGA 62.172 60.000 0.00 0.00 0.00 4.55
3586 7317 1.743252 GAGTCAAAGGCAGGCTCGG 60.743 63.158 0.00 0.00 0.00 4.63
3587 7318 2.097038 CGAGTCAAAGGCAGGCTCG 61.097 63.158 12.71 12.71 42.01 5.03
3588 7319 2.394563 GCGAGTCAAAGGCAGGCTC 61.395 63.158 0.00 0.00 0.00 4.70
3589 7320 2.359230 GCGAGTCAAAGGCAGGCT 60.359 61.111 0.00 0.00 0.00 4.58
3590 7321 3.435186 GGCGAGTCAAAGGCAGGC 61.435 66.667 0.00 0.00 0.00 4.85
3591 7322 1.377725 ATGGCGAGTCAAAGGCAGG 60.378 57.895 0.00 0.00 45.93 4.85
3592 7323 0.674581 TCATGGCGAGTCAAAGGCAG 60.675 55.000 0.00 0.00 45.93 4.85
3593 7324 0.250684 TTCATGGCGAGTCAAAGGCA 60.251 50.000 0.00 0.00 46.75 4.75
3594 7325 1.098050 ATTCATGGCGAGTCAAAGGC 58.902 50.000 0.00 0.00 0.00 4.35
3595 7326 2.353889 CTCATTCATGGCGAGTCAAAGG 59.646 50.000 0.00 0.00 0.00 3.11
3596 7327 2.223203 GCTCATTCATGGCGAGTCAAAG 60.223 50.000 0.00 0.00 0.00 2.77
3597 7328 1.739466 GCTCATTCATGGCGAGTCAAA 59.261 47.619 0.00 0.00 0.00 2.69
3598 7329 1.065926 AGCTCATTCATGGCGAGTCAA 60.066 47.619 0.00 0.00 0.00 3.18
3599 7330 0.538584 AGCTCATTCATGGCGAGTCA 59.461 50.000 0.00 0.00 0.00 3.41
3600 7331 2.515926 TAGCTCATTCATGGCGAGTC 57.484 50.000 0.00 0.00 0.00 3.36
3601 7332 2.831333 CTTAGCTCATTCATGGCGAGT 58.169 47.619 0.00 0.00 0.00 4.18
3602 7333 1.530293 GCTTAGCTCATTCATGGCGAG 59.470 52.381 0.00 0.00 0.00 5.03
3603 7334 1.139654 AGCTTAGCTCATTCATGGCGA 59.860 47.619 0.00 0.00 30.62 5.54
3604 7335 1.590932 AGCTTAGCTCATTCATGGCG 58.409 50.000 0.00 0.00 30.62 5.69
3615 7346 4.214327 GCCGAGCCGAGCTTAGCT 62.214 66.667 6.37 6.37 39.88 3.32
3616 7347 4.214327 AGCCGAGCCGAGCTTAGC 62.214 66.667 0.00 0.00 39.88 3.09
3617 7348 2.026879 GAGCCGAGCCGAGCTTAG 59.973 66.667 10.20 0.00 39.88 2.18
3618 7349 3.889044 CGAGCCGAGCCGAGCTTA 61.889 66.667 10.20 0.00 39.88 3.09
3634 7365 4.421479 AGGCTCGTTCGACCAGCG 62.421 66.667 13.09 0.00 42.69 5.18
3635 7366 2.811317 CAGGCTCGTTCGACCAGC 60.811 66.667 13.09 1.53 0.00 4.85
3636 7367 2.125912 CCAGGCTCGTTCGACCAG 60.126 66.667 13.09 7.47 0.00 4.00
3637 7368 2.035237 AAACCAGGCTCGTTCGACCA 62.035 55.000 0.00 0.00 0.00 4.02
3638 7369 0.883370 AAAACCAGGCTCGTTCGACC 60.883 55.000 0.00 0.00 0.00 4.79
3639 7370 0.234884 CAAAACCAGGCTCGTTCGAC 59.765 55.000 0.00 0.00 0.00 4.20
3640 7371 0.882927 CCAAAACCAGGCTCGTTCGA 60.883 55.000 0.00 0.00 0.00 3.71
3641 7372 0.882927 TCCAAAACCAGGCTCGTTCG 60.883 55.000 0.00 0.00 0.00 3.95
3642 7373 0.875059 CTCCAAAACCAGGCTCGTTC 59.125 55.000 0.00 0.00 0.00 3.95
3643 7374 0.537371 CCTCCAAAACCAGGCTCGTT 60.537 55.000 0.00 0.00 0.00 3.85
3644 7375 1.073199 CCTCCAAAACCAGGCTCGT 59.927 57.895 0.00 0.00 0.00 4.18
3645 7376 3.987404 CCTCCAAAACCAGGCTCG 58.013 61.111 0.00 0.00 0.00 5.03
3649 7380 1.675641 CCGAGCCTCCAAAACCAGG 60.676 63.158 0.00 0.00 0.00 4.45
3650 7381 2.335712 GCCGAGCCTCCAAAACCAG 61.336 63.158 0.00 0.00 0.00 4.00
3651 7382 2.282180 GCCGAGCCTCCAAAACCA 60.282 61.111 0.00 0.00 0.00 3.67
3652 7383 2.034221 AGCCGAGCCTCCAAAACC 59.966 61.111 0.00 0.00 0.00 3.27
3653 7384 2.391389 CGAGCCGAGCCTCCAAAAC 61.391 63.158 0.00 0.00 0.00 2.43
3654 7385 2.047274 CGAGCCGAGCCTCCAAAA 60.047 61.111 0.00 0.00 0.00 2.44
3655 7386 3.296709 GACGAGCCGAGCCTCCAAA 62.297 63.158 1.50 0.00 0.00 3.28
3656 7387 3.760035 GACGAGCCGAGCCTCCAA 61.760 66.667 1.50 0.00 0.00 3.53
3657 7388 4.742649 AGACGAGCCGAGCCTCCA 62.743 66.667 1.50 0.00 0.00 3.86
3658 7389 3.453679 AAGACGAGCCGAGCCTCC 61.454 66.667 1.50 0.00 0.00 4.30
3659 7390 2.202676 CAAGACGAGCCGAGCCTC 60.203 66.667 1.50 0.00 0.00 4.70
3660 7391 4.443266 GCAAGACGAGCCGAGCCT 62.443 66.667 1.50 0.00 0.00 4.58
3677 7408 2.581354 CCTGAACCGAGCCAGAGG 59.419 66.667 0.00 0.00 32.37 3.69
3678 7409 2.125350 GCCTGAACCGAGCCAGAG 60.125 66.667 0.00 0.00 32.37 3.35
3679 7410 3.706373 GGCCTGAACCGAGCCAGA 61.706 66.667 0.00 0.00 46.34 3.86
3710 7441 8.716646 AAAAATAAATAAATACAGCAGGGCAC 57.283 30.769 0.00 0.00 0.00 5.01
3732 7463 1.407258 CAGGGCACTTCCGTTCAAAAA 59.593 47.619 0.00 0.00 34.94 1.94
3733 7464 1.028905 CAGGGCACTTCCGTTCAAAA 58.971 50.000 0.00 0.00 34.94 2.44
3734 7465 1.452145 GCAGGGCACTTCCGTTCAAA 61.452 55.000 0.00 0.00 34.94 2.69
3735 7466 1.896660 GCAGGGCACTTCCGTTCAA 60.897 57.895 0.00 0.00 34.94 2.69
3736 7467 2.281484 GCAGGGCACTTCCGTTCA 60.281 61.111 0.00 0.00 34.94 3.18
3737 7468 2.032681 AGCAGGGCACTTCCGTTC 59.967 61.111 0.00 0.00 34.94 3.95
3738 7469 1.764571 TACAGCAGGGCACTTCCGTT 61.765 55.000 0.00 0.00 34.94 4.44
3739 7470 1.553690 ATACAGCAGGGCACTTCCGT 61.554 55.000 0.00 0.00 34.94 4.69
3740 7471 1.091771 CATACAGCAGGGCACTTCCG 61.092 60.000 0.00 0.00 34.94 4.30
3741 7472 0.749454 CCATACAGCAGGGCACTTCC 60.749 60.000 0.00 0.00 0.00 3.46
3742 7473 0.749454 CCCATACAGCAGGGCACTTC 60.749 60.000 0.00 0.00 38.44 3.01
3743 7474 1.304282 CCCATACAGCAGGGCACTT 59.696 57.895 0.00 0.00 38.44 3.16
3744 7475 3.001514 CCCATACAGCAGGGCACT 58.998 61.111 0.00 0.00 38.44 4.40
3749 7480 3.204827 GCGCACCCATACAGCAGG 61.205 66.667 0.30 0.00 0.00 4.85
3750 7481 3.566853 CGCGCACCCATACAGCAG 61.567 66.667 8.75 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.