Multiple sequence alignment - TraesCS5B01G074400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G074400 chr5B 100.000 7853 0 0 1 7853 88347320 88355172 0.000000e+00 14502.0
1 TraesCS5B01G074400 chr5B 84.807 362 49 4 5218 5578 695662177 695662533 7.490000e-95 359.0
2 TraesCS5B01G074400 chr5B 77.586 580 102 26 5185 5747 429782427 429782995 7.600000e-85 326.0
3 TraesCS5B01G074400 chr5B 93.496 123 8 0 7645 7767 88354844 88354966 4.840000e-42 183.0
4 TraesCS5B01G074400 chr5B 93.496 123 8 0 7525 7647 88354964 88355086 4.840000e-42 183.0
5 TraesCS5B01G074400 chr5B 80.198 202 32 5 290 489 426386600 426386795 2.280000e-30 145.0
6 TraesCS5B01G074400 chr5A 93.260 4629 194 54 628 5181 74939415 74944000 0.000000e+00 6711.0
7 TraesCS5B01G074400 chr5A 94.984 917 37 4 6478 7388 74943981 74944894 0.000000e+00 1430.0
8 TraesCS5B01G074400 chr5A 85.047 642 51 17 1 615 74938810 74939433 5.210000e-171 612.0
9 TraesCS5B01G074400 chr5A 91.635 263 12 4 7390 7647 74944927 74945184 9.690000e-94 355.0
10 TraesCS5B01G074400 chr5A 82.065 184 18 5 108 289 138203916 138204086 8.210000e-30 143.0
11 TraesCS5B01G074400 chr5A 90.090 111 10 1 180 289 439372671 439372561 8.210000e-30 143.0
12 TraesCS5B01G074400 chr5D 92.132 2796 148 32 289 3048 78794952 78797711 0.000000e+00 3879.0
13 TraesCS5B01G074400 chr5D 85.840 1363 123 36 3846 5181 78798254 78799573 0.000000e+00 1384.0
14 TraesCS5B01G074400 chr5D 90.749 681 34 13 6695 7366 78799838 78800498 0.000000e+00 881.0
15 TraesCS5B01G074400 chr5D 80.601 1031 152 27 5276 6266 210384708 210385730 0.000000e+00 752.0
16 TraesCS5B01G074400 chr5D 90.435 230 20 2 7395 7623 78800775 78801003 1.280000e-77 302.0
17 TraesCS5B01G074400 chr5D 90.761 184 17 0 6494 6677 78799578 78799761 6.090000e-61 246.0
18 TraesCS5B01G074400 chr5D 86.486 185 15 3 3656 3837 78798103 78798280 2.240000e-45 195.0
19 TraesCS5B01G074400 chr5D 94.017 117 7 0 173 289 78794785 78794901 2.250000e-40 178.0
20 TraesCS5B01G074400 chr5D 93.966 116 6 1 175 289 338382281 338382166 2.910000e-39 174.0
21 TraesCS5B01G074400 chr5D 96.000 100 4 0 1 100 78794408 78794507 6.310000e-36 163.0
22 TraesCS5B01G074400 chr5D 80.597 201 22 6 290 489 506072418 506072234 1.060000e-28 139.0
23 TraesCS5B01G074400 chr5D 93.182 44 2 1 7780 7822 78801000 78801043 6.580000e-06 63.9
24 TraesCS5B01G074400 chr1B 87.246 1035 97 19 5443 6445 327696113 327695082 0.000000e+00 1147.0
25 TraesCS5B01G074400 chr4B 83.530 1269 161 25 5191 6442 457064025 457065262 0.000000e+00 1142.0
26 TraesCS5B01G074400 chr4D 85.265 1018 94 17 5191 6171 372188754 372189752 0.000000e+00 998.0
27 TraesCS5B01G074400 chr4D 98.214 56 1 0 6390 6445 504188971 504189026 1.800000e-16 99.0
28 TraesCS5B01G074400 chr4D 97.059 34 0 1 3546 3578 277280501 277280468 1.000000e-03 56.5
29 TraesCS5B01G074400 chr7D 81.412 1275 181 32 5183 6410 12909721 12910986 0.000000e+00 990.0
30 TraesCS5B01G074400 chr7D 82.272 801 121 12 5183 5969 15199718 15198925 0.000000e+00 673.0
31 TraesCS5B01G074400 chr7D 97.059 34 1 0 290 323 69240625 69240658 3.060000e-04 58.4
32 TraesCS5B01G074400 chr2D 81.049 1277 194 24 5180 6413 622232191 622230920 0.000000e+00 974.0
33 TraesCS5B01G074400 chr7B 79.802 1312 207 34 5178 6441 52691063 52692364 0.000000e+00 902.0
34 TraesCS5B01G074400 chr7B 90.090 111 8 3 180 289 610477398 610477506 2.950000e-29 141.0
35 TraesCS5B01G074400 chr3D 79.267 1283 212 23 5176 6413 545806407 545805134 0.000000e+00 846.0
36 TraesCS5B01G074400 chr1D 86.935 199 16 6 290 487 228830141 228829952 1.720000e-51 215.0
37 TraesCS5B01G074400 chr1D 92.857 42 0 3 3542 3582 45510649 45510688 3.060000e-04 58.4
38 TraesCS5B01G074400 chr1A 85.930 199 18 6 290 487 296938442 296938253 3.720000e-48 204.0
39 TraesCS5B01G074400 chr6D 90.090 111 8 3 180 289 429902286 429902178 2.950000e-29 141.0
40 TraesCS5B01G074400 chr2B 88.136 118 12 2 172 288 384346485 384346369 1.060000e-28 139.0
41 TraesCS5B01G074400 chr2B 86.885 122 12 4 169 289 750033728 750033610 4.940000e-27 134.0
42 TraesCS5B01G074400 chr3A 81.818 110 17 3 5827 5934 490785800 490785692 1.090000e-13 89.8
43 TraesCS5B01G074400 chr3B 89.706 68 7 0 312 379 59219194 59219127 3.900000e-13 87.9
44 TraesCS5B01G074400 chr7A 81.944 72 12 1 296 366 725157649 725157578 8.510000e-05 60.2
45 TraesCS5B01G074400 chr4A 94.872 39 0 2 3544 3582 473741279 473741315 8.510000e-05 60.2
46 TraesCS5B01G074400 chr2A 100.000 31 0 0 3546 3576 618952019 618951989 3.060000e-04 58.4
47 TraesCS5B01G074400 chr2A 94.444 36 2 0 294 329 136338195 136338160 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G074400 chr5B 88347320 88355172 7852 False 4956.000000 14502 95.664000 1 7853 3 chr5B.!!$F4 7852
1 TraesCS5B01G074400 chr5B 429782427 429782995 568 False 326.000000 326 77.586000 5185 5747 1 chr5B.!!$F2 562
2 TraesCS5B01G074400 chr5A 74938810 74945184 6374 False 2277.000000 6711 91.231500 1 7647 4 chr5A.!!$F2 7646
3 TraesCS5B01G074400 chr5D 78794408 78801043 6635 False 810.211111 3879 91.066889 1 7822 9 chr5D.!!$F2 7821
4 TraesCS5B01G074400 chr5D 210384708 210385730 1022 False 752.000000 752 80.601000 5276 6266 1 chr5D.!!$F1 990
5 TraesCS5B01G074400 chr1B 327695082 327696113 1031 True 1147.000000 1147 87.246000 5443 6445 1 chr1B.!!$R1 1002
6 TraesCS5B01G074400 chr4B 457064025 457065262 1237 False 1142.000000 1142 83.530000 5191 6442 1 chr4B.!!$F1 1251
7 TraesCS5B01G074400 chr4D 372188754 372189752 998 False 998.000000 998 85.265000 5191 6171 1 chr4D.!!$F1 980
8 TraesCS5B01G074400 chr7D 12909721 12910986 1265 False 990.000000 990 81.412000 5183 6410 1 chr7D.!!$F1 1227
9 TraesCS5B01G074400 chr7D 15198925 15199718 793 True 673.000000 673 82.272000 5183 5969 1 chr7D.!!$R1 786
10 TraesCS5B01G074400 chr2D 622230920 622232191 1271 True 974.000000 974 81.049000 5180 6413 1 chr2D.!!$R1 1233
11 TraesCS5B01G074400 chr7B 52691063 52692364 1301 False 902.000000 902 79.802000 5178 6441 1 chr7B.!!$F1 1263
12 TraesCS5B01G074400 chr3D 545805134 545806407 1273 True 846.000000 846 79.267000 5176 6413 1 chr3D.!!$R1 1237

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.030101 GAGAAGCCGAGAGACATCCG 59.970 60.000 0.00 0.0 0.00 4.18 F
759 1045 0.032952 GCCCACATATCGAAGCCGTA 59.967 55.000 0.00 0.0 37.05 4.02 F
1376 1670 0.032952 GTTGCTACCTGGTGTGTCGA 59.967 55.000 10.23 0.0 0.00 4.20 F
1617 1911 0.589223 GGCATCGAACCAAACGACAA 59.411 50.000 3.08 0.0 42.37 3.18 F
1949 2254 0.976641 CAGGCTAGTGAACAGGGACA 59.023 55.000 0.00 0.0 0.00 4.02 F
3825 4149 0.249868 CCGACCAACTGCTTCTCACA 60.250 55.000 0.00 0.0 0.00 3.58 F
5319 5699 0.028242 CGCAGAGACTACGCTACCAG 59.972 60.000 0.00 0.0 0.00 4.00 F
5623 6006 1.065709 ACGTGTTTCGGCTCCCATATT 60.066 47.619 0.00 0.0 44.69 1.28 F
6278 6706 0.109153 AGACCACAACTGCTGCATCA 59.891 50.000 1.31 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1778 0.033781 TGCTGCACTTGGGCAAAATC 59.966 50.000 0.00 0.0 44.40 2.17 R
1930 2235 0.976641 TGTCCCTGTTCACTAGCCTG 59.023 55.000 0.00 0.0 0.00 4.85 R
3245 3557 1.076923 GGTCCGGTCTGGCTCTCTA 60.077 63.158 0.00 0.0 37.80 2.43 R
3422 3736 2.568623 AAAGGTCCTCTCACGCAAAT 57.431 45.000 0.00 0.0 0.00 2.32 R
3845 4169 1.374252 CCGGGTGGAAGTCGAGTTG 60.374 63.158 10.94 0.0 37.49 3.16 R
5636 6019 0.250553 GGGTCCGTCATTGTTGGTGA 60.251 55.000 0.00 0.0 0.00 4.02 R
6275 6703 0.683973 GCTGGTCCAGATCCGATGAT 59.316 55.000 23.77 0.0 32.44 2.45 R
6489 6921 0.982704 AGGTGCATTCTCAGTCTGCT 59.017 50.000 0.00 0.0 36.84 4.24 R
7367 7871 2.036733 GCATGGCCAGATGCAACATAAT 59.963 45.455 23.51 0.0 46.77 1.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.374184 GAGAGGAGCAGCTGAGAGTTA 58.626 52.381 20.43 0.00 0.00 2.24
61 62 2.649531 TACAAACAAGGTGGGTCAGG 57.350 50.000 0.00 0.00 0.00 3.86
105 106 0.030101 GAGAAGCCGAGAGACATCCG 59.970 60.000 0.00 0.00 0.00 4.18
128 129 2.959707 GGGGAGACGTGTAAGATCTCAT 59.040 50.000 0.00 0.00 40.61 2.90
150 151 9.589111 CTCATATTTAGGTGAGATCATGAGATG 57.411 37.037 0.09 0.00 43.50 2.90
153 154 9.941325 ATATTTAGGTGAGATCATGAGATGAAC 57.059 33.333 0.09 0.00 43.50 3.18
156 157 3.390639 GGTGAGATCATGAGATGAACCCT 59.609 47.826 0.09 0.00 43.50 4.34
248 454 1.308998 GGGGCATGTCTACAATTCCG 58.691 55.000 0.00 0.00 0.00 4.30
463 721 5.860941 AAACGATCTCATATGTCTCACCT 57.139 39.130 1.90 0.00 0.00 4.00
517 793 7.148239 CCCTTAATCTGTTCACCATAAGTTCAC 60.148 40.741 0.00 0.00 0.00 3.18
521 797 4.814234 TCTGTTCACCATAAGTTCACACAC 59.186 41.667 0.00 0.00 0.00 3.82
544 820 8.246180 ACACTAAACTGATAATTCATGGCAAAG 58.754 33.333 0.00 0.00 0.00 2.77
553 829 4.870123 ATTCATGGCAAAGTTAAGCACA 57.130 36.364 0.00 0.00 0.00 4.57
558 834 3.020274 TGGCAAAGTTAAGCACAAGTGA 58.980 40.909 4.04 0.00 0.00 3.41
681 960 3.028366 GCAAGAGAAAGGCCGTCGC 62.028 63.158 0.00 0.36 0.00 5.19
697 977 4.436998 GCACCGGTCTCGTCTGGG 62.437 72.222 2.59 0.00 38.12 4.45
759 1045 0.032952 GCCCACATATCGAAGCCGTA 59.967 55.000 0.00 0.00 37.05 4.02
940 1229 1.609501 CTCCGGTTGACCTCTCCCA 60.610 63.158 0.00 0.00 0.00 4.37
1020 1310 1.153469 GCTCCCTTCTCGCTTCCTG 60.153 63.158 0.00 0.00 0.00 3.86
1024 1314 1.153469 CCTTCTCGCTTCCTGCTCC 60.153 63.158 0.00 0.00 40.11 4.70
1025 1315 1.612395 CCTTCTCGCTTCCTGCTCCT 61.612 60.000 0.00 0.00 40.11 3.69
1070 1360 2.876219 GACTCCGACTCCGACACC 59.124 66.667 0.00 0.00 38.22 4.16
1376 1670 0.032952 GTTGCTACCTGGTGTGTCGA 59.967 55.000 10.23 0.00 0.00 4.20
1429 1723 0.945813 TTTACGCGGTTTTGTCCTGG 59.054 50.000 12.47 0.00 0.00 4.45
1448 1742 5.132144 TCCTGGGGTTATCATTTCTTAGACC 59.868 44.000 0.00 0.00 0.00 3.85
1451 1745 5.163343 TGGGGTTATCATTTCTTAGACCTCG 60.163 44.000 0.00 0.00 0.00 4.63
1529 1823 4.979197 TGCAAACCACGCTAAATTTTAGTG 59.021 37.500 22.21 22.21 0.00 2.74
1530 1824 4.143410 GCAAACCACGCTAAATTTTAGTGC 60.143 41.667 23.25 15.78 0.00 4.40
1586 1880 9.389755 AGCTAGTTCTGGAGAAAATAAAATCTC 57.610 33.333 0.00 0.00 41.08 2.75
1608 1902 1.002468 CCGAAATCATGGCATCGAACC 60.002 52.381 8.87 0.00 37.48 3.62
1617 1911 0.589223 GGCATCGAACCAAACGACAA 59.411 50.000 3.08 0.00 42.37 3.18
1624 1918 4.066490 TCGAACCAAACGACAACCATATT 58.934 39.130 0.00 0.00 34.85 1.28
1627 1921 6.204301 TCGAACCAAACGACAACCATATTTTA 59.796 34.615 0.00 0.00 34.85 1.52
1628 1922 6.303733 CGAACCAAACGACAACCATATTTTAC 59.696 38.462 0.00 0.00 0.00 2.01
1629 1923 6.887626 ACCAAACGACAACCATATTTTACT 57.112 33.333 0.00 0.00 0.00 2.24
1658 1955 6.713450 ACAATCGTGAAAGTTTGGTAAGGTAT 59.287 34.615 0.00 0.00 0.00 2.73
1659 1956 7.879160 ACAATCGTGAAAGTTTGGTAAGGTATA 59.121 33.333 0.00 0.00 0.00 1.47
1676 1973 5.491982 AGGTATAAACTTCAGCTCACAAGG 58.508 41.667 0.00 0.00 0.00 3.61
1680 1977 2.841442 ACTTCAGCTCACAAGGGTAC 57.159 50.000 0.00 0.00 0.00 3.34
1753 2057 1.434696 GCATATTGCTGCTGCGGTT 59.565 52.632 10.62 0.84 40.96 4.44
1771 2075 7.441890 TGCGGTTAATGAAGTAAGAAATTCA 57.558 32.000 0.00 0.00 39.59 2.57
1772 2076 7.877003 TGCGGTTAATGAAGTAAGAAATTCAA 58.123 30.769 0.00 0.00 38.80 2.69
1773 2077 8.020819 TGCGGTTAATGAAGTAAGAAATTCAAG 58.979 33.333 0.00 0.00 38.80 3.02
1792 2096 7.639113 TTCAAGTGAGTTTTTATGGTGAACT 57.361 32.000 0.00 0.00 36.40 3.01
1847 2151 2.030958 GCCATTTGCCAACAGCTGC 61.031 57.895 15.27 0.00 44.23 5.25
1867 2171 2.357637 GCAACAACTTGTGTAGGAAGCA 59.642 45.455 0.00 0.00 40.60 3.91
1874 2178 3.891366 ACTTGTGTAGGAAGCAAAGCAAT 59.109 39.130 0.00 0.00 0.00 3.56
1875 2179 3.921119 TGTGTAGGAAGCAAAGCAATG 57.079 42.857 0.00 0.00 0.00 2.82
1876 2180 3.221771 TGTGTAGGAAGCAAAGCAATGT 58.778 40.909 0.00 0.00 0.00 2.71
1877 2181 4.393834 TGTGTAGGAAGCAAAGCAATGTA 58.606 39.130 0.00 0.00 0.00 2.29
1879 2183 3.440173 TGTAGGAAGCAAAGCAATGTAGC 59.560 43.478 0.00 0.00 0.00 3.58
1880 2184 2.517959 AGGAAGCAAAGCAATGTAGCA 58.482 42.857 0.00 0.00 36.85 3.49
1881 2185 2.490903 AGGAAGCAAAGCAATGTAGCAG 59.509 45.455 0.00 0.00 36.85 4.24
1882 2186 2.489329 GGAAGCAAAGCAATGTAGCAGA 59.511 45.455 0.00 0.00 36.85 4.26
1883 2187 3.496155 GAAGCAAAGCAATGTAGCAGAC 58.504 45.455 0.00 0.00 36.85 3.51
1884 2188 2.787994 AGCAAAGCAATGTAGCAGACT 58.212 42.857 0.00 0.00 36.85 3.24
1885 2189 2.486982 AGCAAAGCAATGTAGCAGACTG 59.513 45.455 0.00 0.00 36.85 3.51
1949 2254 0.976641 CAGGCTAGTGAACAGGGACA 59.023 55.000 0.00 0.00 0.00 4.02
2099 2404 4.499183 CAAGTGTACCTTTAGAGCAGGAG 58.501 47.826 0.00 0.00 35.14 3.69
2128 2433 7.120432 TGTGTGCTCTATATTGTTACATGCAAA 59.880 33.333 0.00 0.00 0.00 3.68
2307 2612 4.980590 TGCTGGTAATGTGAAATTAAGCG 58.019 39.130 0.00 0.00 0.00 4.68
2539 2850 8.893727 GGTATGTTCTTTCAGTGCTTAATATGT 58.106 33.333 0.00 0.00 0.00 2.29
2869 3181 9.185192 CTTGTTAATCAAGGTTCATTTGACTTC 57.815 33.333 8.89 0.00 46.85 3.01
2873 3185 5.772825 TCAAGGTTCATTTGACTTCCAAG 57.227 39.130 0.00 0.00 35.94 3.61
2891 3203 9.255029 ACTTCCAAGTTGCAAAATATATAACCT 57.745 29.630 0.00 0.00 35.21 3.50
2943 3255 1.422531 TGGAGCTTTTTGCCAACCAT 58.577 45.000 0.00 0.00 44.23 3.55
3062 3374 5.980698 AATCTACACTGAGAAATGCATCG 57.019 39.130 0.00 0.00 0.00 3.84
3140 3452 1.513622 GAGTCCCGTGAGAGCTTCC 59.486 63.158 0.00 0.00 0.00 3.46
3147 3459 2.028020 CCCGTGAGAGCTTCCTAGTTTT 60.028 50.000 0.00 0.00 0.00 2.43
3209 3521 3.334583 TGAAAGGAAATCAGGGAGACG 57.665 47.619 0.00 0.00 0.00 4.18
3214 3526 1.407437 GGAAATCAGGGAGACGCATGT 60.407 52.381 0.00 0.00 0.00 3.21
3223 3535 2.512515 GACGCATGTGGCTCCCTC 60.513 66.667 11.65 0.00 41.67 4.30
3245 3557 5.136828 TCGAGAGGAATAAGCTTGAGAGAT 58.863 41.667 9.86 0.00 0.00 2.75
3259 3571 2.151202 GAGAGATAGAGAGCCAGACCG 58.849 57.143 0.00 0.00 0.00 4.79
3265 3577 1.076923 GAGAGCCAGACCGGACCTA 60.077 63.158 9.46 0.00 36.56 3.08
3297 3609 1.553704 ACCTCAACACGTAAGATCCCC 59.446 52.381 0.00 0.00 43.62 4.81
3315 3627 1.004277 CCCCAAGGATCCAAACTTCGA 59.996 52.381 15.82 0.00 33.47 3.71
3317 3629 2.552155 CCCAAGGATCCAAACTTCGACA 60.552 50.000 15.82 0.00 0.00 4.35
3404 3716 1.139256 GGCCACTAGTTCCTTAGCTCC 59.861 57.143 0.00 0.00 0.00 4.70
3422 3736 9.796180 CTTAGCTCCTAGTTTATTCTACCTAGA 57.204 37.037 0.00 0.00 30.68 2.43
3435 3749 2.969628 ACCTAGATTTGCGTGAGAGG 57.030 50.000 0.00 0.00 0.00 3.69
3449 3763 4.695928 GCGTGAGAGGACCTTTTAATTCTT 59.304 41.667 0.00 0.00 0.00 2.52
3451 3765 6.166982 CGTGAGAGGACCTTTTAATTCTTCT 58.833 40.000 0.00 0.00 0.00 2.85
3604 3926 4.154918 GCCGACATCTTTGAACTTTGATCT 59.845 41.667 0.00 0.00 0.00 2.75
3648 3970 9.347240 CCTTCATAGATTAAATGTCCACATTCT 57.653 33.333 5.41 1.81 45.06 2.40
3698 4022 4.282703 AGTTCCTTCTAAAACTAGCCGTCA 59.717 41.667 0.00 0.00 34.05 4.35
3701 4025 3.522553 CTTCTAAAACTAGCCGTCAGGG 58.477 50.000 0.00 0.00 38.20 4.45
3825 4149 0.249868 CCGACCAACTGCTTCTCACA 60.250 55.000 0.00 0.00 0.00 3.58
3834 4158 2.636893 ACTGCTTCTCACATGGACTCTT 59.363 45.455 0.00 0.00 0.00 2.85
3845 4169 4.932200 CACATGGACTCTTGGTTTCTAGAC 59.068 45.833 0.00 0.00 0.00 2.59
3872 4196 4.306245 TCCACCCGGAAACTCTGT 57.694 55.556 0.73 0.00 38.83 3.41
3977 4301 0.544357 AATCCAGACCCGGACAGTCA 60.544 55.000 0.73 0.00 38.07 3.41
4100 4424 1.520666 CGAGGGGTTCGTATTGGCT 59.479 57.895 0.00 0.00 44.27 4.75
4136 4460 0.615331 GATCTGTCTGGCTCCAACCA 59.385 55.000 0.00 0.00 38.29 3.67
4144 4468 4.042311 TGTCTGGCTCCAACCAAAATACTA 59.958 41.667 0.00 0.00 39.86 1.82
4147 4471 5.045213 TCTGGCTCCAACCAAAATACTATGA 60.045 40.000 0.00 0.00 39.86 2.15
4273 4599 6.931281 CCCCTTCACAGTATGACTTACATATG 59.069 42.308 0.00 0.00 42.42 1.78
4289 4615 8.958119 CTTACATATGTACACCCAATGTAAGT 57.042 34.615 28.84 13.97 46.38 2.24
4330 4656 6.607019 AGGGAAACTAATGTTCTGTTGGTTA 58.393 36.000 0.00 0.00 34.96 2.85
4331 4657 6.489022 AGGGAAACTAATGTTCTGTTGGTTAC 59.511 38.462 0.00 0.00 34.96 2.50
4381 4707 3.569701 TCCGTTCGGGGATACACTAATAC 59.430 47.826 11.37 0.00 38.54 1.89
4382 4708 3.571401 CCGTTCGGGGATACACTAATACT 59.429 47.826 3.04 0.00 38.54 2.12
4384 4710 4.037208 CGTTCGGGGATACACTAATACTGT 59.963 45.833 0.00 0.00 38.54 3.55
4489 4827 2.803203 CCACTGGGATGGAATGCAG 58.197 57.895 0.00 0.00 43.02 4.41
4545 4883 3.633525 TGGAATGCTGTCCAATTATGCTC 59.366 43.478 6.48 0.00 44.91 4.26
4569 4907 6.326323 TCATATAGCAGAGGTGTGAATTGGTA 59.674 38.462 0.00 0.00 0.00 3.25
4678 5024 2.291800 GGGTTTCCCTAAAGGTTACCCC 60.292 54.545 14.94 7.08 46.36 4.95
4679 5025 2.379567 GGTTTCCCTAAAGGTTACCCCA 59.620 50.000 0.00 0.00 35.42 4.96
4682 5028 5.088730 GTTTCCCTAAAGGTTACCCCATTT 58.911 41.667 0.00 0.00 36.75 2.32
4683 5029 4.325084 TCCCTAAAGGTTACCCCATTTG 57.675 45.455 0.00 0.00 36.75 2.32
4684 5030 2.764010 CCCTAAAGGTTACCCCATTTGC 59.236 50.000 0.00 0.00 34.66 3.68
4842 5199 8.523915 ACATTTTACTTCCAATGCATATCTCA 57.476 30.769 0.00 0.00 34.26 3.27
4850 5207 7.776969 ACTTCCAATGCATATCTCACTGTTTAT 59.223 33.333 0.00 0.00 0.00 1.40
4971 5330 5.405935 AAGTAATCATTGGGAGGTTTTGC 57.594 39.130 0.00 0.00 0.00 3.68
5142 5514 2.333926 TCCTCGTGCAGTTGAATAACG 58.666 47.619 0.00 0.00 41.71 3.18
5154 5530 3.969117 TGAATAACGCAATGCCTCATC 57.031 42.857 0.00 0.00 0.00 2.92
5171 5547 2.241941 TCATCCACACTGCCATTGGTAT 59.758 45.455 4.26 0.00 0.00 2.73
5262 5641 1.278127 ACGATACAAAGTGGAGGGGTG 59.722 52.381 0.00 0.00 0.00 4.61
5285 5664 3.802866 CCCTCTTACAAAGCAGATCCTC 58.197 50.000 0.00 0.00 0.00 3.71
5319 5699 0.028242 CGCAGAGACTACGCTACCAG 59.972 60.000 0.00 0.00 0.00 4.00
5337 5717 1.280421 CAGAGAAGAACAAGGGGGAGG 59.720 57.143 0.00 0.00 0.00 4.30
5361 5741 4.588854 TACAACGCCACGCCACGT 62.589 61.111 0.00 0.00 46.07 4.49
5610 5993 2.385091 GGGCATACGCGACGTGTTT 61.385 57.895 20.37 9.17 41.39 2.83
5613 5996 1.339134 CATACGCGACGTGTTTCGG 59.661 57.895 20.37 3.41 41.39 4.30
5623 6006 1.065709 ACGTGTTTCGGCTCCCATATT 60.066 47.619 0.00 0.00 44.69 1.28
5633 6016 1.826385 CTCCCATATTTGGATCCGGC 58.174 55.000 7.39 0.00 46.92 6.13
5636 6019 1.272648 CCCATATTTGGATCCGGCCAT 60.273 52.381 7.39 0.00 46.92 4.40
5778 6180 2.375345 CGGCATCCCTACCCCAAGT 61.375 63.158 0.00 0.00 0.00 3.16
5811 6213 2.044848 ACCACACGGCACACCAAA 60.045 55.556 0.00 0.00 34.57 3.28
5815 6217 2.830827 CACGGCACACCAAACCCA 60.831 61.111 0.00 0.00 34.57 4.51
5943 6346 3.009115 CGGTGGACCCAGGGACAT 61.009 66.667 14.54 0.00 0.00 3.06
5986 6410 1.597742 CCGCCAAATCCGAGATCATT 58.402 50.000 0.00 0.00 0.00 2.57
5987 6411 2.766313 CCGCCAAATCCGAGATCATTA 58.234 47.619 0.00 0.00 0.00 1.90
6091 6518 2.355115 GCCGGTCCCAAACCTCAT 59.645 61.111 1.90 0.00 46.87 2.90
6228 6656 1.068121 CCAACCCAGGAGAAGGAAGT 58.932 55.000 0.00 0.00 0.00 3.01
6231 6659 1.363246 ACCCAGGAGAAGGAAGTTCC 58.637 55.000 14.54 14.54 35.51 3.62
6241 6669 4.699522 GAAGTTCCCCACGCCGCT 62.700 66.667 0.00 0.00 0.00 5.52
6275 6703 1.526686 CCAGACCACAACTGCTGCA 60.527 57.895 0.88 0.88 34.47 4.41
6278 6706 0.109153 AGACCACAACTGCTGCATCA 59.891 50.000 1.31 0.00 0.00 3.07
6279 6707 1.171308 GACCACAACTGCTGCATCAT 58.829 50.000 1.31 0.00 0.00 2.45
6454 6886 4.996434 GATCCAGCGGGGGCGATG 62.996 72.222 2.05 0.00 37.22 3.84
6465 6897 4.292178 GGCGATGCGAGAGGGGAG 62.292 72.222 0.00 0.00 0.00 4.30
6466 6898 4.292178 GCGATGCGAGAGGGGAGG 62.292 72.222 0.00 0.00 0.00 4.30
6467 6899 3.610669 CGATGCGAGAGGGGAGGG 61.611 72.222 0.00 0.00 0.00 4.30
6468 6900 3.237741 GATGCGAGAGGGGAGGGG 61.238 72.222 0.00 0.00 0.00 4.79
6469 6901 4.888325 ATGCGAGAGGGGAGGGGG 62.888 72.222 0.00 0.00 0.00 5.40
6472 6904 4.862823 CGAGAGGGGAGGGGGTCC 62.863 77.778 0.00 0.00 46.10 4.46
6480 6912 2.361771 GAGGGGGTCCGTCCACTA 59.638 66.667 3.15 0.00 41.42 2.74
6481 6913 1.075450 GAGGGGGTCCGTCCACTAT 60.075 63.158 3.15 0.00 41.42 2.12
6482 6914 1.075450 AGGGGGTCCGTCCACTATC 60.075 63.158 3.15 0.00 39.12 2.08
6483 6915 2.496291 GGGGGTCCGTCCACTATCG 61.496 68.421 0.00 0.00 40.09 2.92
6484 6916 2.496291 GGGGTCCGTCCACTATCGG 61.496 68.421 0.00 0.00 46.93 4.18
6485 6917 1.755783 GGGTCCGTCCACTATCGGT 60.756 63.158 3.64 0.00 45.88 4.69
6486 6918 0.466189 GGGTCCGTCCACTATCGGTA 60.466 60.000 3.64 0.00 45.88 4.02
6487 6919 1.613836 GGTCCGTCCACTATCGGTAT 58.386 55.000 3.64 0.00 45.88 2.73
6488 6920 2.553028 GGGTCCGTCCACTATCGGTATA 60.553 54.545 3.64 0.00 45.88 1.47
6489 6921 3.149196 GGTCCGTCCACTATCGGTATAA 58.851 50.000 3.64 0.00 45.88 0.98
6490 6922 3.190118 GGTCCGTCCACTATCGGTATAAG 59.810 52.174 3.64 0.00 45.88 1.73
6491 6923 2.816087 TCCGTCCACTATCGGTATAAGC 59.184 50.000 3.64 0.00 45.88 3.09
6492 6924 2.555325 CCGTCCACTATCGGTATAAGCA 59.445 50.000 0.00 0.00 41.58 3.91
6518 6950 3.691118 TGAGAATGCACCTTATGACTTGC 59.309 43.478 0.00 0.00 35.45 4.01
6523 6955 1.009829 CACCTTATGACTTGCGGCTC 58.990 55.000 0.00 0.00 0.00 4.70
6554 6986 2.532843 AGGAAAGATGTGCAAGCCATT 58.467 42.857 0.00 0.00 0.00 3.16
6570 7002 4.922206 AGCCATTATCAGAAGTTCACCAA 58.078 39.130 5.50 0.00 0.00 3.67
6588 7020 5.068198 TCACCAACGAAACACTTAGACTACT 59.932 40.000 0.00 0.00 0.00 2.57
6596 7028 8.844244 ACGAAACACTTAGACTACTCTTTTCTA 58.156 33.333 0.00 0.00 0.00 2.10
6726 7217 9.534565 TGACTTATAGTTGCTTATCATGAGAAC 57.465 33.333 0.09 0.00 0.00 3.01
6742 7233 4.743493 TGAGAACTTTGCTTTGTTCCAAC 58.257 39.130 10.86 6.05 42.32 3.77
6756 7247 2.882137 GTTCCAACGATGTTTCCCTTCA 59.118 45.455 0.00 0.00 0.00 3.02
6889 7380 6.016777 ACTCTTGAGTTGTTCCAATGATGTTC 60.017 38.462 0.00 0.00 0.00 3.18
6977 7468 6.015180 TGGAGCTGCTCAATAAAAGTTTCATT 60.015 34.615 28.95 0.00 31.08 2.57
7012 7503 2.875296 TCTGGAACTGTTTGGGAATGG 58.125 47.619 0.00 0.00 0.00 3.16
7271 7762 5.680619 TGGTATACTCATGGATGTGTTTCC 58.319 41.667 2.25 2.67 36.16 3.13
7284 7775 3.420893 TGTGTTTCCTCCATGACCATTC 58.579 45.455 0.00 0.00 0.00 2.67
7293 7784 1.477700 CCATGACCATTCGCCATGTTT 59.522 47.619 0.00 0.00 36.77 2.83
7367 7871 2.925724 ACCATCTTTGTGTCGGTCAAA 58.074 42.857 0.00 0.00 34.34 2.69
7412 8176 1.356398 TGTATGGTTGGAAAGTCCCCC 59.644 52.381 0.00 0.00 35.03 5.40
7428 8192 1.247567 CCCCGACAGAATTGCACTTT 58.752 50.000 0.00 0.00 0.00 2.66
7429 8193 1.068333 CCCCGACAGAATTGCACTTTG 60.068 52.381 0.00 0.00 0.00 2.77
7541 8310 7.791029 TCATGCTATAATTGAACTGTCCTACA 58.209 34.615 0.00 0.00 0.00 2.74
7572 8341 9.457436 TGTGAGAAGGTAATTTTAAAGGATACC 57.543 33.333 13.94 13.94 36.99 2.73
7579 8348 8.771286 AGGTAATTTTAAAGGATACCGGAACTA 58.229 33.333 9.46 0.00 40.71 2.24
7580 8349 9.394767 GGTAATTTTAAAGGATACCGGAACTAA 57.605 33.333 9.46 0.00 37.17 2.24
7588 8357 7.961326 AAGGATACCGGAACTAAAGTAGTTA 57.039 36.000 9.46 0.00 43.64 2.24
7640 8409 7.157347 TCTGAGCATGTATCATGGTCTATTTC 58.843 38.462 28.93 13.01 44.30 2.17
7653 8422 9.739276 TCATGGTCTATTTCTGTTAATTGAACT 57.261 29.630 0.00 0.00 38.98 3.01
7654 8423 9.778993 CATGGTCTATTTCTGTTAATTGAACTG 57.221 33.333 0.00 0.00 38.98 3.16
7655 8424 8.918202 TGGTCTATTTCTGTTAATTGAACTGT 57.082 30.769 0.00 0.00 38.98 3.55
7656 8425 8.999431 TGGTCTATTTCTGTTAATTGAACTGTC 58.001 33.333 0.00 0.00 38.98 3.51
7657 8426 8.451748 GGTCTATTTCTGTTAATTGAACTGTCC 58.548 37.037 0.00 0.00 38.98 4.02
7658 8427 9.220767 GTCTATTTCTGTTAATTGAACTGTCCT 57.779 33.333 0.00 0.00 38.98 3.85
7661 8430 7.739498 TTTCTGTTAATTGAACTGTCCTACC 57.261 36.000 0.00 0.00 38.98 3.18
7662 8431 6.681729 TCTGTTAATTGAACTGTCCTACCT 57.318 37.500 0.00 0.00 38.98 3.08
7663 8432 7.786046 TCTGTTAATTGAACTGTCCTACCTA 57.214 36.000 0.00 0.00 38.98 3.08
7664 8433 8.197592 TCTGTTAATTGAACTGTCCTACCTAA 57.802 34.615 0.00 0.00 38.98 2.69
7665 8434 8.092687 TCTGTTAATTGAACTGTCCTACCTAAC 58.907 37.037 0.00 0.00 38.98 2.34
7666 8435 7.970102 TGTTAATTGAACTGTCCTACCTAACT 58.030 34.615 0.00 0.00 38.98 2.24
7667 8436 8.434392 TGTTAATTGAACTGTCCTACCTAACTT 58.566 33.333 0.00 0.00 38.98 2.66
7668 8437 9.281371 GTTAATTGAACTGTCCTACCTAACTTT 57.719 33.333 0.00 0.00 34.96 2.66
7669 8438 7.745620 AATTGAACTGTCCTACCTAACTTTG 57.254 36.000 0.00 0.00 0.00 2.77
7670 8439 6.488769 TTGAACTGTCCTACCTAACTTTGA 57.511 37.500 0.00 0.00 0.00 2.69
7671 8440 6.097915 TGAACTGTCCTACCTAACTTTGAG 57.902 41.667 0.00 0.00 0.00 3.02
7672 8441 5.836898 TGAACTGTCCTACCTAACTTTGAGA 59.163 40.000 0.00 0.00 0.00 3.27
7673 8442 6.325545 TGAACTGTCCTACCTAACTTTGAGAA 59.674 38.462 0.00 0.00 0.00 2.87
7674 8443 6.347859 ACTGTCCTACCTAACTTTGAGAAG 57.652 41.667 0.00 0.00 38.87 2.85
7675 8444 5.246429 ACTGTCCTACCTAACTTTGAGAAGG 59.754 44.000 0.00 0.00 37.19 3.46
7676 8445 5.152934 TGTCCTACCTAACTTTGAGAAGGT 58.847 41.667 10.15 10.15 44.47 3.50
7677 8446 6.317312 TGTCCTACCTAACTTTGAGAAGGTA 58.683 40.000 10.98 10.98 42.34 3.08
7678 8447 6.210185 TGTCCTACCTAACTTTGAGAAGGTAC 59.790 42.308 8.73 0.00 42.34 3.34
7679 8448 6.436847 GTCCTACCTAACTTTGAGAAGGTACT 59.563 42.308 8.73 0.00 42.34 2.73
7696 8465 6.625532 AGGTACTTTTAAAGGATACGGGAA 57.374 37.500 9.64 0.00 36.99 3.97
7697 8466 6.409704 AGGTACTTTTAAAGGATACGGGAAC 58.590 40.000 9.64 0.00 36.99 3.62
7698 8467 6.214208 AGGTACTTTTAAAGGATACGGGAACT 59.786 38.462 9.64 0.00 36.99 3.01
7699 8468 6.881065 GGTACTTTTAAAGGATACGGGAACTT 59.119 38.462 9.64 0.00 46.39 2.66
7700 8469 7.065085 GGTACTTTTAAAGGATACGGGAACTTC 59.935 40.741 9.64 0.00 46.39 3.01
7701 8470 6.536447 ACTTTTAAAGGATACGGGAACTTCA 58.464 36.000 9.64 0.00 46.39 3.02
7702 8471 6.653740 ACTTTTAAAGGATACGGGAACTTCAG 59.346 38.462 9.64 0.00 46.39 3.02
7703 8472 5.750352 TTAAAGGATACGGGAACTTCAGT 57.250 39.130 0.00 0.00 46.39 3.41
7704 8473 6.855763 TTAAAGGATACGGGAACTTCAGTA 57.144 37.500 0.00 0.00 46.39 2.74
7705 8474 5.340439 AAAGGATACGGGAACTTCAGTAG 57.660 43.478 0.00 0.00 46.39 2.57
7706 8475 3.978610 AGGATACGGGAACTTCAGTAGT 58.021 45.455 0.00 0.00 46.39 2.73
7707 8476 4.351127 AGGATACGGGAACTTCAGTAGTT 58.649 43.478 0.00 0.00 46.80 2.24
7708 8477 5.513233 AGGATACGGGAACTTCAGTAGTTA 58.487 41.667 0.00 0.00 45.04 2.24
7709 8478 6.134754 AGGATACGGGAACTTCAGTAGTTAT 58.865 40.000 0.00 0.00 45.04 1.89
7710 8479 6.040616 AGGATACGGGAACTTCAGTAGTTATG 59.959 42.308 0.00 0.00 45.04 1.90
7711 8480 3.858247 ACGGGAACTTCAGTAGTTATGC 58.142 45.455 0.00 0.00 47.00 3.14
7712 8481 3.259876 ACGGGAACTTCAGTAGTTATGCA 59.740 43.478 0.00 0.00 47.00 3.96
7713 8482 4.081087 ACGGGAACTTCAGTAGTTATGCAT 60.081 41.667 3.79 3.79 47.00 3.96
7714 8483 4.508124 CGGGAACTTCAGTAGTTATGCATC 59.492 45.833 0.19 0.00 47.00 3.91
7715 8484 5.675538 GGGAACTTCAGTAGTTATGCATCT 58.324 41.667 0.19 0.00 47.00 2.90
7716 8485 6.461092 CGGGAACTTCAGTAGTTATGCATCTA 60.461 42.308 0.19 0.00 47.00 1.98
7717 8486 6.926272 GGGAACTTCAGTAGTTATGCATCTAG 59.074 42.308 0.19 0.00 47.00 2.43
7718 8487 7.418025 GGGAACTTCAGTAGTTATGCATCTAGT 60.418 40.741 0.19 0.00 47.00 2.57
7719 8488 7.982354 GGAACTTCAGTAGTTATGCATCTAGTT 59.018 37.037 0.19 1.40 47.00 2.24
7720 8489 8.709386 AACTTCAGTAGTTATGCATCTAGTTG 57.291 34.615 0.19 1.93 45.22 3.16
7721 8490 7.268586 ACTTCAGTAGTTATGCATCTAGTTGG 58.731 38.462 0.19 0.00 31.29 3.77
7722 8491 7.124298 ACTTCAGTAGTTATGCATCTAGTTGGA 59.876 37.037 0.19 0.10 31.29 3.53
7723 8492 7.418337 TCAGTAGTTATGCATCTAGTTGGAA 57.582 36.000 0.19 0.00 0.00 3.53
7724 8493 8.023021 TCAGTAGTTATGCATCTAGTTGGAAT 57.977 34.615 0.19 0.00 0.00 3.01
7725 8494 8.486210 TCAGTAGTTATGCATCTAGTTGGAATT 58.514 33.333 0.19 0.00 0.00 2.17
7726 8495 9.113838 CAGTAGTTATGCATCTAGTTGGAATTT 57.886 33.333 0.19 0.00 0.00 1.82
7727 8496 9.331282 AGTAGTTATGCATCTAGTTGGAATTTC 57.669 33.333 0.19 0.00 0.00 2.17
7728 8497 9.109393 GTAGTTATGCATCTAGTTGGAATTTCA 57.891 33.333 0.19 0.00 0.00 2.69
7729 8498 8.757982 AGTTATGCATCTAGTTGGAATTTCAT 57.242 30.769 0.19 0.00 0.00 2.57
7730 8499 9.193806 AGTTATGCATCTAGTTGGAATTTCATT 57.806 29.630 0.19 0.00 0.00 2.57
7731 8500 9.807649 GTTATGCATCTAGTTGGAATTTCATTT 57.192 29.630 0.19 0.00 0.00 2.32
7733 8502 7.707624 TGCATCTAGTTGGAATTTCATTTCT 57.292 32.000 3.05 0.00 0.00 2.52
7734 8503 8.125978 TGCATCTAGTTGGAATTTCATTTCTT 57.874 30.769 3.05 0.00 0.00 2.52
7735 8504 8.587608 TGCATCTAGTTGGAATTTCATTTCTTT 58.412 29.630 3.05 0.00 0.00 2.52
7736 8505 9.428097 GCATCTAGTTGGAATTTCATTTCTTTT 57.572 29.630 3.05 0.00 0.00 2.27
7741 8510 8.146479 AGTTGGAATTTCATTTCTTTTTGAGC 57.854 30.769 0.00 0.00 0.00 4.26
7742 8511 7.769970 AGTTGGAATTTCATTTCTTTTTGAGCA 59.230 29.630 0.00 0.00 0.00 4.26
7743 8512 8.562052 GTTGGAATTTCATTTCTTTTTGAGCAT 58.438 29.630 0.00 0.00 0.00 3.79
7744 8513 8.090250 TGGAATTTCATTTCTTTTTGAGCATG 57.910 30.769 0.00 0.00 0.00 4.06
7745 8514 7.716123 TGGAATTTCATTTCTTTTTGAGCATGT 59.284 29.630 0.00 0.00 0.00 3.21
7746 8515 9.206870 GGAATTTCATTTCTTTTTGAGCATGTA 57.793 29.630 0.00 0.00 0.00 2.29
7749 8518 9.932207 ATTTCATTTCTTTTTGAGCATGTATCA 57.068 25.926 0.00 0.00 0.00 2.15
7750 8519 9.932207 TTTCATTTCTTTTTGAGCATGTATCAT 57.068 25.926 3.96 0.00 0.00 2.45
7751 8520 8.920509 TCATTTCTTTTTGAGCATGTATCATG 57.079 30.769 5.49 5.49 0.00 3.07
7752 8521 7.977293 TCATTTCTTTTTGAGCATGTATCATGG 59.023 33.333 10.96 0.00 0.00 3.66
7753 8522 6.839124 TTCTTTTTGAGCATGTATCATGGT 57.161 33.333 13.05 13.05 0.00 3.55
7754 8523 6.441093 TCTTTTTGAGCATGTATCATGGTC 57.559 37.500 25.21 25.21 44.26 4.02
7755 8524 6.182627 TCTTTTTGAGCATGTATCATGGTCT 58.817 36.000 28.93 13.52 44.30 3.85
7756 8525 7.337938 TCTTTTTGAGCATGTATCATGGTCTA 58.662 34.615 28.93 23.17 44.30 2.59
7757 8526 7.994911 TCTTTTTGAGCATGTATCATGGTCTAT 59.005 33.333 28.93 0.00 44.30 1.98
7758 8527 8.523915 TTTTTGAGCATGTATCATGGTCTATT 57.476 30.769 28.93 0.00 44.30 1.73
7759 8528 8.523915 TTTTGAGCATGTATCATGGTCTATTT 57.476 30.769 28.93 0.00 44.30 1.40
7760 8529 7.734924 TTGAGCATGTATCATGGTCTATTTC 57.265 36.000 28.93 13.01 44.30 2.17
7761 8530 7.071069 TGAGCATGTATCATGGTCTATTTCT 57.929 36.000 28.93 10.82 44.30 2.52
7762 8531 6.932960 TGAGCATGTATCATGGTCTATTTCTG 59.067 38.462 28.93 0.63 44.30 3.02
7763 8532 6.835174 AGCATGTATCATGGTCTATTTCTGT 58.165 36.000 8.34 0.00 0.00 3.41
7764 8533 7.285566 AGCATGTATCATGGTCTATTTCTGTT 58.714 34.615 8.34 0.00 0.00 3.16
7765 8534 8.432013 AGCATGTATCATGGTCTATTTCTGTTA 58.568 33.333 8.34 0.00 0.00 2.41
7766 8535 9.056005 GCATGTATCATGGTCTATTTCTGTTAA 57.944 33.333 10.96 0.00 0.00 2.01
7776 8545 9.537852 TGGTCTATTTCTGTTAACTAAGTAGGA 57.462 33.333 7.22 0.00 0.00 2.94
7817 8586 4.083324 CCGAGCTATGCTTTTGAAAGTTGA 60.083 41.667 5.47 0.00 39.88 3.18
7822 8591 6.920210 AGCTATGCTTTTGAAAGTTGAAACTC 59.080 34.615 5.47 0.00 34.65 3.01
7823 8592 6.129352 GCTATGCTTTTGAAAGTTGAAACTCG 60.129 38.462 5.47 0.00 38.57 4.18
7824 8593 5.303747 TGCTTTTGAAAGTTGAAACTCGA 57.696 34.783 5.47 0.00 38.57 4.04
7825 8594 5.704888 TGCTTTTGAAAGTTGAAACTCGAA 58.295 33.333 5.47 0.00 38.57 3.71
7826 8595 6.153067 TGCTTTTGAAAGTTGAAACTCGAAA 58.847 32.000 5.47 0.00 38.57 3.46
7827 8596 6.088883 TGCTTTTGAAAGTTGAAACTCGAAAC 59.911 34.615 5.47 0.00 38.57 2.78
7828 8597 6.308041 GCTTTTGAAAGTTGAAACTCGAAACT 59.692 34.615 5.47 0.00 38.57 2.66
7829 8598 7.483691 GCTTTTGAAAGTTGAAACTCGAAACTA 59.516 33.333 0.10 0.00 38.57 2.24
7830 8599 9.503427 CTTTTGAAAGTTGAAACTCGAAACTAT 57.497 29.630 0.10 0.00 38.57 2.12
7833 8602 8.306680 TGAAAGTTGAAACTCGAAACTATAGG 57.693 34.615 4.43 0.00 38.57 2.57
7834 8603 7.386848 TGAAAGTTGAAACTCGAAACTATAGGG 59.613 37.037 4.43 0.00 38.57 3.53
7835 8604 5.176592 AGTTGAAACTCGAAACTATAGGGC 58.823 41.667 4.43 0.00 32.86 5.19
7836 8605 4.133013 TGAAACTCGAAACTATAGGGCC 57.867 45.455 4.43 0.00 0.00 5.80
7837 8606 3.516300 TGAAACTCGAAACTATAGGGCCA 59.484 43.478 6.18 0.00 0.00 5.36
7838 8607 4.020039 TGAAACTCGAAACTATAGGGCCAA 60.020 41.667 6.18 0.00 0.00 4.52
7839 8608 4.563140 AACTCGAAACTATAGGGCCAAA 57.437 40.909 6.18 0.00 0.00 3.28
7840 8609 4.563140 ACTCGAAACTATAGGGCCAAAA 57.437 40.909 6.18 0.00 0.00 2.44
7841 8610 5.112129 ACTCGAAACTATAGGGCCAAAAT 57.888 39.130 6.18 0.00 0.00 1.82
7842 8611 4.881850 ACTCGAAACTATAGGGCCAAAATG 59.118 41.667 6.18 0.00 0.00 2.32
7843 8612 4.850680 TCGAAACTATAGGGCCAAAATGT 58.149 39.130 6.18 0.00 0.00 2.71
7844 8613 5.258051 TCGAAACTATAGGGCCAAAATGTT 58.742 37.500 6.18 0.48 0.00 2.71
7845 8614 5.712917 TCGAAACTATAGGGCCAAAATGTTT 59.287 36.000 6.18 10.01 0.00 2.83
7846 8615 6.209788 TCGAAACTATAGGGCCAAAATGTTTT 59.790 34.615 6.18 0.00 0.00 2.43
7847 8616 6.310224 CGAAACTATAGGGCCAAAATGTTTTG 59.690 38.462 6.18 10.00 45.34 2.44
7848 8617 5.084818 ACTATAGGGCCAAAATGTTTTGC 57.915 39.130 6.18 7.94 44.62 3.68
7849 8618 4.777366 ACTATAGGGCCAAAATGTTTTGCT 59.223 37.500 6.18 7.19 44.62 3.91
7850 8619 5.955355 ACTATAGGGCCAAAATGTTTTGCTA 59.045 36.000 6.18 8.79 44.62 3.49
7851 8620 3.683365 AGGGCCAAAATGTTTTGCTAG 57.317 42.857 6.18 1.82 44.62 3.42
7852 8621 2.302733 AGGGCCAAAATGTTTTGCTAGG 59.697 45.455 6.18 1.40 44.62 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.225017 CCCTGACCCACCTTGTTTGTAT 60.225 50.000 0.00 0.00 0.00 2.29
61 62 3.311110 TGGTGTCAGACGCTCCCC 61.311 66.667 13.83 0.00 0.00 4.81
105 106 2.099427 GAGATCTTACACGTCTCCCCAC 59.901 54.545 0.00 0.00 33.85 4.61
128 129 8.370940 GGTTCATCTCATGATCTCACCTAAATA 58.629 37.037 0.00 0.00 39.39 1.40
142 143 0.475906 GGGGGAGGGTTCATCTCATG 59.524 60.000 0.00 0.00 33.18 3.07
254 460 2.038387 ACAACGAGTTTTGAGCTGGT 57.962 45.000 0.00 0.00 0.00 4.00
493 751 8.230486 GTGTGAACTTATGGTGAACAGATTAAG 58.770 37.037 0.00 0.00 0.00 1.85
496 772 6.017109 GTGTGTGAACTTATGGTGAACAGATT 60.017 38.462 0.00 0.00 0.00 2.40
503 779 6.481976 CAGTTTAGTGTGTGAACTTATGGTGA 59.518 38.462 0.00 0.00 31.63 4.02
517 793 7.087409 TGCCATGAATTATCAGTTTAGTGTG 57.913 36.000 0.00 0.00 39.39 3.82
544 820 5.572896 GGTAAATGCATCACTTGTGCTTAAC 59.427 40.000 0.00 0.00 42.92 2.01
553 829 7.759489 TTTGTAAGAGGTAAATGCATCACTT 57.241 32.000 0.00 0.25 0.00 3.16
558 834 8.133024 TGGATTTTTGTAAGAGGTAAATGCAT 57.867 30.769 0.00 0.00 33.54 3.96
646 924 1.872679 GCCGTCTCGCGTAAAGGAG 60.873 63.158 16.44 2.14 39.32 3.69
681 960 2.675423 TCCCAGACGAGACCGGTG 60.675 66.667 14.63 0.00 40.78 4.94
735 1021 0.758734 CTTCGATATGTGGGCCCTCA 59.241 55.000 28.00 28.00 0.00 3.86
983 1273 2.239654 AGCATGCCTCTTTAACCAGCTA 59.760 45.455 15.66 0.00 0.00 3.32
988 1278 1.393603 GGGAGCATGCCTCTTTAACC 58.606 55.000 15.66 5.29 46.86 2.85
1104 1394 3.782443 GGGGATCCGAACCGCAGT 61.782 66.667 5.45 0.00 39.61 4.40
1376 1670 2.483889 GCATAGCTTTAGCCGACTTCCT 60.484 50.000 0.00 0.00 43.38 3.36
1388 1682 2.171448 CCACAGGGACTAGCATAGCTTT 59.829 50.000 0.00 0.00 44.39 3.51
1429 1723 4.750598 GCGAGGTCTAAGAAATGATAACCC 59.249 45.833 0.00 0.00 0.00 4.11
1484 1778 0.033781 TGCTGCACTTGGGCAAAATC 59.966 50.000 0.00 0.00 44.40 2.17
1508 1802 4.087930 CGCACTAAAATTTAGCGTGGTTTG 59.912 41.667 12.28 3.36 43.08 2.93
1529 1823 2.286184 CGCAACACCTTATAATGGTCGC 60.286 50.000 4.25 6.62 35.28 5.19
1530 1824 3.191669 TCGCAACACCTTATAATGGTCG 58.808 45.455 4.25 5.59 35.28 4.79
1567 1861 6.707290 TCGGTGAGATTTTATTTTCTCCAGA 58.293 36.000 0.00 0.00 38.05 3.86
1586 1880 1.298602 TCGATGCCATGATTTCGGTG 58.701 50.000 0.00 0.00 32.67 4.94
1608 1902 9.537848 GTCTTAGTAAAATATGGTTGTCGTTTG 57.462 33.333 0.00 0.00 0.00 2.93
1617 1911 9.661563 TTCACGATTGTCTTAGTAAAATATGGT 57.338 29.630 0.00 0.00 0.00 3.55
1624 1918 8.339714 CCAAACTTTCACGATTGTCTTAGTAAA 58.660 33.333 0.00 0.00 0.00 2.01
1627 1921 5.820947 ACCAAACTTTCACGATTGTCTTAGT 59.179 36.000 0.00 0.00 0.00 2.24
1628 1922 6.300354 ACCAAACTTTCACGATTGTCTTAG 57.700 37.500 0.00 0.00 0.00 2.18
1629 1923 7.041644 CCTTACCAAACTTTCACGATTGTCTTA 60.042 37.037 0.00 0.00 0.00 2.10
1658 1955 3.857157 ACCCTTGTGAGCTGAAGTTTA 57.143 42.857 0.00 0.00 0.00 2.01
1659 1956 2.736670 ACCCTTGTGAGCTGAAGTTT 57.263 45.000 0.00 0.00 0.00 2.66
1676 1973 4.767928 CCTAGGAGATGTATGGTCTGTACC 59.232 50.000 1.05 0.00 46.98 3.34
1680 1977 6.307776 TCTAACCTAGGAGATGTATGGTCTG 58.692 44.000 17.98 0.00 0.00 3.51
1711 2015 6.636850 GCTACAACACCAATTTACACTCTTTG 59.363 38.462 0.00 0.00 0.00 2.77
1776 2080 9.498176 AACGACTATTAGTTCACCATAAAAACT 57.502 29.630 0.00 0.00 37.10 2.66
1792 2096 6.040247 CACATCCTGCTTGTAACGACTATTA 58.960 40.000 0.00 0.00 0.00 0.98
1847 2151 4.630894 TTGCTTCCTACACAAGTTGTTG 57.369 40.909 5.57 4.92 39.91 3.33
1930 2235 0.976641 TGTCCCTGTTCACTAGCCTG 59.023 55.000 0.00 0.00 0.00 4.85
1949 2254 1.184431 TTCCATGCGCCACAATTCAT 58.816 45.000 4.18 0.00 0.00 2.57
2157 2462 3.364366 CCTGCATGAAGAAACAACGAGAC 60.364 47.826 0.74 0.00 0.00 3.36
2307 2612 7.095229 GGAACATTTAAGACAAAAAGGCATTCC 60.095 37.037 0.00 0.00 0.00 3.01
2539 2850 6.003950 ACCTGTTCAATAAAAGCAGCTTCTA 58.996 36.000 8.48 0.00 0.00 2.10
2610 2922 6.651086 TCCGATATCACCTCACCTAGTATAG 58.349 44.000 3.12 0.00 38.80 1.31
2869 3181 7.920682 GTGGAGGTTATATATTTTGCAACTTGG 59.079 37.037 0.00 0.00 0.00 3.61
2873 3185 6.239204 GGGGTGGAGGTTATATATTTTGCAAC 60.239 42.308 0.00 0.00 0.00 4.17
2891 3203 2.026262 GCTATCTCAAGTTTGGGGTGGA 60.026 50.000 0.00 0.00 0.00 4.02
2943 3255 2.986019 TGAGGATGAGGAACCAGGAAAA 59.014 45.455 0.00 0.00 0.00 2.29
3062 3374 7.621428 TTGATGAATCTTTGGAGATGAACTC 57.379 36.000 0.00 0.00 41.78 3.01
3129 3441 4.557205 TCGAAAAACTAGGAAGCTCTCAC 58.443 43.478 0.00 0.00 0.00 3.51
3199 3511 2.981302 CCACATGCGTCTCCCTGA 59.019 61.111 0.00 0.00 0.00 3.86
3209 3521 2.202987 CTCGAGGGAGCCACATGC 60.203 66.667 3.91 0.00 41.71 4.06
3223 3535 4.909696 TCTCTCAAGCTTATTCCTCTCG 57.090 45.455 0.00 0.00 0.00 4.04
3245 3557 1.076923 GGTCCGGTCTGGCTCTCTA 60.077 63.158 0.00 0.00 37.80 2.43
3297 3609 2.778299 TGTCGAAGTTTGGATCCTTGG 58.222 47.619 14.23 0.02 0.00 3.61
3317 3629 4.712122 ACCAACGAGACAACAATTTGTT 57.288 36.364 8.97 8.97 46.43 2.83
3327 3639 4.374399 GGAAAGAGTAAACCAACGAGACA 58.626 43.478 0.00 0.00 0.00 3.41
3328 3640 3.427863 CGGAAAGAGTAAACCAACGAGAC 59.572 47.826 0.00 0.00 0.00 3.36
3395 3707 7.842887 AGGTAGAATAAACTAGGAGCTAAGG 57.157 40.000 0.00 0.00 0.00 2.69
3404 3716 8.969267 CACGCAAATCTAGGTAGAATAAACTAG 58.031 37.037 0.00 0.00 35.69 2.57
3422 3736 2.568623 AAAGGTCCTCTCACGCAAAT 57.431 45.000 0.00 0.00 0.00 2.32
3698 4022 2.882927 GGTTTTCGCAGAAAAACCCT 57.117 45.000 19.87 0.00 44.26 4.34
3701 4025 4.170256 TGTCAAGGTTTTCGCAGAAAAAC 58.830 39.130 18.10 18.10 45.90 2.43
3825 4149 5.308237 AGTTGTCTAGAAACCAAGAGTCCAT 59.692 40.000 0.00 0.00 0.00 3.41
3834 4158 4.261909 GGAAGTCGAGTTGTCTAGAAACCA 60.262 45.833 10.94 0.00 0.00 3.67
3845 4169 1.374252 CCGGGTGGAAGTCGAGTTG 60.374 63.158 10.94 0.00 37.49 3.16
3872 4196 4.172020 TGTGGCTACCTATATTGGGCATA 58.828 43.478 8.13 0.00 35.14 3.14
3966 4290 2.603473 TGACCCTGACTGTCCGGG 60.603 66.667 29.16 29.16 43.79 5.73
3977 4301 3.434453 CCGAAGTCTCTAGATCTGACCCT 60.434 52.174 5.18 0.00 0.00 4.34
4067 4391 1.519455 CTCGGCCGAGAATGGACAC 60.519 63.158 45.28 0.00 44.53 3.67
4100 4424 6.263842 AGACAGATCAAGCTTGTTTTCATCAA 59.736 34.615 25.19 3.73 0.00 2.57
4118 4442 1.067295 TTGGTTGGAGCCAGACAGAT 58.933 50.000 0.00 0.00 40.01 2.90
4144 4468 7.701539 TGCAAACCAAATCTATACAAGTCAT 57.298 32.000 0.00 0.00 0.00 3.06
4254 4580 7.652105 GGGTGTACATATGTAAGTCATACTGTG 59.348 40.741 17.07 0.00 41.13 3.66
4273 4599 6.430000 AGTGATCAAACTTACATTGGGTGTAC 59.570 38.462 0.00 0.00 42.82 2.90
4289 4615 5.772393 TTCCCTAGGCTTAAGTGATCAAA 57.228 39.130 2.05 0.00 0.00 2.69
4330 4656 5.343307 AAAAGATGACAGCAAAACCAAGT 57.657 34.783 0.00 0.00 0.00 3.16
4331 4657 6.980397 AGTTAAAAGATGACAGCAAAACCAAG 59.020 34.615 0.00 0.00 0.00 3.61
4545 4883 5.371526 ACCAATTCACACCTCTGCTATATG 58.628 41.667 0.00 0.00 0.00 1.78
4579 4917 4.998671 TTTCCAAAAGTGATGTGAGCAA 57.001 36.364 0.00 0.00 0.00 3.91
4678 5024 9.643693 AGGAAAGAAATGTAATAAGTGCAAATG 57.356 29.630 0.00 0.00 0.00 2.32
4748 5102 1.872237 GCTCCAACACGCTCTACAACA 60.872 52.381 0.00 0.00 0.00 3.33
4971 5330 5.503662 TGCATGCATTAACTACATGGAAG 57.496 39.130 18.46 0.00 38.89 3.46
5108 5478 3.589988 CACGAGGATAAAAGCACAGAGT 58.410 45.455 0.00 0.00 0.00 3.24
5142 5514 0.454600 CAGTGTGGATGAGGCATTGC 59.545 55.000 0.00 0.00 0.00 3.56
5154 5530 2.358898 GCTTATACCAATGGCAGTGTGG 59.641 50.000 14.40 12.98 38.46 4.17
5171 5547 3.191581 CCTGTTTCGAGAGAGTCTGCTTA 59.808 47.826 0.00 0.00 43.69 3.09
5262 5641 2.293170 GATCTGCTTTGTAAGAGGGCC 58.707 52.381 0.00 0.00 0.00 5.80
5285 5664 2.071540 TCTGCGTAGTACCGATATCCG 58.928 52.381 0.00 0.00 38.18 4.18
5319 5699 1.279558 GACCTCCCCCTTGTTCTTCTC 59.720 57.143 0.00 0.00 0.00 2.87
5337 5717 1.615107 GCGTGGCGTTGTACTCTGAC 61.615 60.000 0.00 0.00 0.00 3.51
5361 5741 1.639108 TGGAGTCTAGGTGTGCTAGGA 59.361 52.381 0.00 0.00 0.00 2.94
5623 6006 1.857638 TTGGTGATGGCCGGATCCAA 61.858 55.000 13.41 15.13 39.96 3.53
5636 6019 0.250553 GGGTCCGTCATTGTTGGTGA 60.251 55.000 0.00 0.00 0.00 4.02
5760 6149 2.325393 GACTTGGGGTAGGGATGCCG 62.325 65.000 0.00 0.00 0.00 5.69
5815 6217 1.348775 GGCCTTCCATCCTACCTGCT 61.349 60.000 0.00 0.00 0.00 4.24
5943 6346 1.681327 GTCGGCAGTCCTAGGGTCA 60.681 63.158 9.46 0.00 0.00 4.02
6005 6429 1.004440 GTCCTGGCTCTGCGTTCTT 60.004 57.895 0.00 0.00 0.00 2.52
6047 6473 0.677842 GTACCCGTGAGTGTGTCCTT 59.322 55.000 0.00 0.00 0.00 3.36
6079 6506 1.200519 CGGGTAGATGAGGTTTGGGA 58.799 55.000 0.00 0.00 0.00 4.37
6091 6518 2.043248 GGGTGCTCTCCGGGTAGA 60.043 66.667 0.00 0.00 0.00 2.59
6275 6703 0.683973 GCTGGTCCAGATCCGATGAT 59.316 55.000 23.77 0.00 32.44 2.45
6278 6706 2.143419 GGGCTGGTCCAGATCCGAT 61.143 63.158 23.77 0.00 36.21 4.18
6279 6707 2.764128 GGGCTGGTCCAGATCCGA 60.764 66.667 23.77 0.00 36.21 4.55
6330 6759 2.740055 CTGCTCGCTGGTGGTCAC 60.740 66.667 0.00 0.00 0.00 3.67
6448 6880 4.292178 CTCCCCTCTCGCATCGCC 62.292 72.222 0.00 0.00 0.00 5.54
6449 6881 4.292178 CCTCCCCTCTCGCATCGC 62.292 72.222 0.00 0.00 0.00 4.58
6450 6882 3.610669 CCCTCCCCTCTCGCATCG 61.611 72.222 0.00 0.00 0.00 3.84
6451 6883 3.237741 CCCCTCCCCTCTCGCATC 61.238 72.222 0.00 0.00 0.00 3.91
6452 6884 4.888325 CCCCCTCCCCTCTCGCAT 62.888 72.222 0.00 0.00 0.00 4.73
6455 6887 4.862823 GGACCCCCTCCCCTCTCG 62.863 77.778 0.00 0.00 31.83 4.04
6456 6888 4.862823 CGGACCCCCTCCCCTCTC 62.863 77.778 0.00 0.00 35.21 3.20
6462 6894 2.600735 ATAGTGGACGGACCCCCTCC 62.601 65.000 0.00 0.00 38.00 4.30
6463 6895 1.075450 ATAGTGGACGGACCCCCTC 60.075 63.158 0.00 0.00 38.00 4.30
6464 6896 1.075450 GATAGTGGACGGACCCCCT 60.075 63.158 0.00 0.00 38.00 4.79
6465 6897 2.496291 CGATAGTGGACGGACCCCC 61.496 68.421 0.00 0.00 38.00 5.40
6466 6898 3.126528 CGATAGTGGACGGACCCC 58.873 66.667 0.00 0.00 38.00 4.95
6472 6904 3.501062 TCTGCTTATACCGATAGTGGACG 59.499 47.826 0.00 0.00 0.00 4.79
6473 6905 4.519730 AGTCTGCTTATACCGATAGTGGAC 59.480 45.833 0.00 0.00 0.00 4.02
6474 6906 4.519350 CAGTCTGCTTATACCGATAGTGGA 59.481 45.833 0.00 0.00 0.00 4.02
6475 6907 4.519350 TCAGTCTGCTTATACCGATAGTGG 59.481 45.833 0.00 0.00 0.00 4.00
6476 6908 5.470437 TCTCAGTCTGCTTATACCGATAGTG 59.530 44.000 0.00 0.00 0.00 2.74
6477 6909 5.622180 TCTCAGTCTGCTTATACCGATAGT 58.378 41.667 0.00 0.00 0.00 2.12
6478 6910 6.561737 TTCTCAGTCTGCTTATACCGATAG 57.438 41.667 0.00 0.00 0.00 2.08
6479 6911 6.570571 GCATTCTCAGTCTGCTTATACCGATA 60.571 42.308 0.00 0.00 33.15 2.92
6480 6912 5.777802 CATTCTCAGTCTGCTTATACCGAT 58.222 41.667 0.00 0.00 0.00 4.18
6481 6913 4.499865 GCATTCTCAGTCTGCTTATACCGA 60.500 45.833 0.00 0.00 33.15 4.69
6482 6914 3.738282 GCATTCTCAGTCTGCTTATACCG 59.262 47.826 0.00 0.00 33.15 4.02
6483 6915 4.509600 GTGCATTCTCAGTCTGCTTATACC 59.490 45.833 0.00 0.00 36.84 2.73
6484 6916 4.509600 GGTGCATTCTCAGTCTGCTTATAC 59.490 45.833 0.00 0.00 36.84 1.47
6485 6917 4.406972 AGGTGCATTCTCAGTCTGCTTATA 59.593 41.667 0.00 0.00 36.84 0.98
6486 6918 3.199508 AGGTGCATTCTCAGTCTGCTTAT 59.800 43.478 0.00 0.00 36.84 1.73
6487 6919 2.568956 AGGTGCATTCTCAGTCTGCTTA 59.431 45.455 0.00 0.00 36.84 3.09
6488 6920 1.350351 AGGTGCATTCTCAGTCTGCTT 59.650 47.619 0.00 0.00 36.84 3.91
6489 6921 0.982704 AGGTGCATTCTCAGTCTGCT 59.017 50.000 0.00 0.00 36.84 4.24
6490 6922 1.818642 AAGGTGCATTCTCAGTCTGC 58.181 50.000 0.00 0.00 36.45 4.26
6491 6923 4.569966 GTCATAAGGTGCATTCTCAGTCTG 59.430 45.833 0.00 0.00 0.00 3.51
6492 6924 4.469227 AGTCATAAGGTGCATTCTCAGTCT 59.531 41.667 0.00 0.00 0.00 3.24
6518 6950 1.519455 CCTTCCTTGTAGCGAGCCG 60.519 63.158 0.00 0.00 0.00 5.52
6523 6955 3.372206 CACATCTTTCCTTCCTTGTAGCG 59.628 47.826 0.00 0.00 0.00 4.26
6554 6986 5.235616 GTGTTTCGTTGGTGAACTTCTGATA 59.764 40.000 0.00 0.00 0.00 2.15
6570 7002 7.714703 AGAAAAGAGTAGTCTAAGTGTTTCGT 58.285 34.615 12.70 3.64 30.45 3.85
6742 7233 2.086869 ACATGCTGAAGGGAAACATCG 58.913 47.619 0.00 0.00 0.00 3.84
6756 7247 3.748668 GCCATGGTTAGGACATACATGCT 60.749 47.826 14.67 0.00 38.02 3.79
6889 7380 3.654273 TCCAGTATAGTTCCAGAAGGGG 58.346 50.000 0.00 0.00 37.22 4.79
6977 7468 8.073467 ACAGTTCCAGAAGGACAAATTTAAAA 57.927 30.769 0.00 0.00 45.73 1.52
7012 7503 4.137543 ACAGGGAACAACAATCAAGTCTC 58.862 43.478 0.00 0.00 0.00 3.36
7090 7581 8.421784 AGAAACAAACTTCAGTACAGACTATCA 58.578 33.333 0.00 0.00 33.32 2.15
7091 7582 8.704234 CAGAAACAAACTTCAGTACAGACTATC 58.296 37.037 0.00 0.00 33.32 2.08
7092 7583 8.204836 ACAGAAACAAACTTCAGTACAGACTAT 58.795 33.333 0.00 0.00 33.32 2.12
7156 7647 5.526115 CAATTTTCAGTCATGACAAGCACT 58.474 37.500 27.02 2.75 34.35 4.40
7271 7762 3.409201 ATGGCGAATGGTCATGGAG 57.591 52.632 0.00 0.00 40.15 3.86
7284 7775 4.358851 CATAACCATAACCAAACATGGCG 58.641 43.478 0.00 0.00 44.74 5.69
7293 7784 7.768807 AACTACAAAAGCATAACCATAACCA 57.231 32.000 0.00 0.00 0.00 3.67
7367 7871 2.036733 GCATGGCCAGATGCAACATAAT 59.963 45.455 23.51 0.00 46.77 1.28
7388 7894 3.506067 GGGACTTTCCAACCATACAAGTG 59.494 47.826 0.00 0.00 38.64 3.16
7412 8176 7.621832 TTTTATTCAAAGTGCAATTCTGTCG 57.378 32.000 0.00 0.00 0.00 4.35
7428 8192 6.147164 CGACCTGAGCAACTAACTTTTATTCA 59.853 38.462 0.00 0.00 0.00 2.57
7429 8193 6.367969 TCGACCTGAGCAACTAACTTTTATTC 59.632 38.462 0.00 0.00 0.00 1.75
7437 8206 3.182967 CTGATCGACCTGAGCAACTAAC 58.817 50.000 0.00 0.00 43.57 2.34
7572 8341 6.046593 TGGATGCATAACTACTTTAGTTCCG 58.953 40.000 0.00 0.00 45.38 4.30
7579 8348 5.815581 TCCAACTGGATGCATAACTACTTT 58.184 37.500 0.00 0.00 39.78 2.66
7580 8349 5.435686 TCCAACTGGATGCATAACTACTT 57.564 39.130 0.00 0.00 39.78 2.24
7588 8357 5.687166 AATGAAATTCCAACTGGATGCAT 57.313 34.783 0.00 0.00 44.98 3.96
7640 8409 8.095169 AGTTAGGTAGGACAGTTCAATTAACAG 58.905 37.037 0.00 0.00 40.83 3.16
7647 8416 6.325545 TCTCAAAGTTAGGTAGGACAGTTCAA 59.674 38.462 0.00 0.00 0.00 2.69
7648 8417 5.836898 TCTCAAAGTTAGGTAGGACAGTTCA 59.163 40.000 0.00 0.00 0.00 3.18
7649 8418 6.342338 TCTCAAAGTTAGGTAGGACAGTTC 57.658 41.667 0.00 0.00 0.00 3.01
7650 8419 6.239629 CCTTCTCAAAGTTAGGTAGGACAGTT 60.240 42.308 0.00 0.00 0.00 3.16
7651 8420 5.246429 CCTTCTCAAAGTTAGGTAGGACAGT 59.754 44.000 0.00 0.00 0.00 3.55
7652 8421 5.246429 ACCTTCTCAAAGTTAGGTAGGACAG 59.754 44.000 0.00 0.00 39.17 3.51
7653 8422 5.152934 ACCTTCTCAAAGTTAGGTAGGACA 58.847 41.667 0.00 0.00 39.17 4.02
7654 8423 5.741962 ACCTTCTCAAAGTTAGGTAGGAC 57.258 43.478 0.00 0.00 39.17 3.85
7655 8424 6.559429 AGTACCTTCTCAAAGTTAGGTAGGA 58.441 40.000 2.30 0.00 42.31 2.94
7656 8425 6.854091 AGTACCTTCTCAAAGTTAGGTAGG 57.146 41.667 2.30 0.00 42.31 3.18
7659 8428 9.910267 TTTAAAAGTACCTTCTCAAAGTTAGGT 57.090 29.630 0.00 0.00 43.23 3.08
7663 8432 9.642343 ATCCTTTAAAAGTACCTTCTCAAAGTT 57.358 29.630 0.00 0.00 0.00 2.66
7666 8435 9.211485 CGTATCCTTTAAAAGTACCTTCTCAAA 57.789 33.333 0.00 0.00 0.00 2.69
7667 8436 7.820872 CCGTATCCTTTAAAAGTACCTTCTCAA 59.179 37.037 0.00 0.00 0.00 3.02
7668 8437 7.325694 CCGTATCCTTTAAAAGTACCTTCTCA 58.674 38.462 0.00 0.00 0.00 3.27
7669 8438 6.760298 CCCGTATCCTTTAAAAGTACCTTCTC 59.240 42.308 0.00 0.00 0.00 2.87
7670 8439 6.441604 TCCCGTATCCTTTAAAAGTACCTTCT 59.558 38.462 0.00 0.00 0.00 2.85
7671 8440 6.643388 TCCCGTATCCTTTAAAAGTACCTTC 58.357 40.000 0.00 0.00 0.00 3.46
7672 8441 6.625532 TCCCGTATCCTTTAAAAGTACCTT 57.374 37.500 0.00 0.00 0.00 3.50
7673 8442 6.214208 AGTTCCCGTATCCTTTAAAAGTACCT 59.786 38.462 0.00 0.00 0.00 3.08
7674 8443 6.409704 AGTTCCCGTATCCTTTAAAAGTACC 58.590 40.000 0.00 0.00 0.00 3.34
7675 8444 7.603784 TGAAGTTCCCGTATCCTTTAAAAGTAC 59.396 37.037 0.00 0.00 0.00 2.73
7676 8445 7.678837 TGAAGTTCCCGTATCCTTTAAAAGTA 58.321 34.615 0.00 0.00 0.00 2.24
7677 8446 6.536447 TGAAGTTCCCGTATCCTTTAAAAGT 58.464 36.000 0.00 0.00 0.00 2.66
7678 8447 6.653740 ACTGAAGTTCCCGTATCCTTTAAAAG 59.346 38.462 0.00 0.00 0.00 2.27
7679 8448 6.536447 ACTGAAGTTCCCGTATCCTTTAAAA 58.464 36.000 0.00 0.00 0.00 1.52
7680 8449 6.117975 ACTGAAGTTCCCGTATCCTTTAAA 57.882 37.500 0.00 0.00 0.00 1.52
7681 8450 5.750352 ACTGAAGTTCCCGTATCCTTTAA 57.250 39.130 0.00 0.00 0.00 1.52
7682 8451 5.954150 ACTACTGAAGTTCCCGTATCCTTTA 59.046 40.000 0.00 0.00 33.35 1.85
7683 8452 4.776308 ACTACTGAAGTTCCCGTATCCTTT 59.224 41.667 0.00 0.00 33.35 3.11
7684 8453 4.351127 ACTACTGAAGTTCCCGTATCCTT 58.649 43.478 0.00 0.00 33.35 3.36
7685 8454 3.978610 ACTACTGAAGTTCCCGTATCCT 58.021 45.455 0.00 0.00 33.35 3.24
7686 8455 4.732672 AACTACTGAAGTTCCCGTATCC 57.267 45.455 0.00 0.00 45.64 2.59
7687 8456 5.690857 GCATAACTACTGAAGTTCCCGTATC 59.309 44.000 0.00 0.00 45.64 2.24
7688 8457 5.128171 TGCATAACTACTGAAGTTCCCGTAT 59.872 40.000 0.00 0.00 45.64 3.06
7689 8458 4.463539 TGCATAACTACTGAAGTTCCCGTA 59.536 41.667 0.00 1.60 45.64 4.02
7690 8459 3.259876 TGCATAACTACTGAAGTTCCCGT 59.740 43.478 0.00 0.41 45.64 5.28
7691 8460 3.857052 TGCATAACTACTGAAGTTCCCG 58.143 45.455 0.00 0.00 45.64 5.14
7692 8461 5.675538 AGATGCATAACTACTGAAGTTCCC 58.324 41.667 0.00 0.00 45.64 3.97
7693 8462 7.493367 ACTAGATGCATAACTACTGAAGTTCC 58.507 38.462 0.00 0.00 45.64 3.62
7694 8463 8.812329 CAACTAGATGCATAACTACTGAAGTTC 58.188 37.037 0.00 0.00 45.64 3.01
7696 8465 7.124298 TCCAACTAGATGCATAACTACTGAAGT 59.876 37.037 0.00 0.00 41.49 3.01
7697 8466 7.492524 TCCAACTAGATGCATAACTACTGAAG 58.507 38.462 0.00 0.00 0.00 3.02
7698 8467 7.418337 TCCAACTAGATGCATAACTACTGAA 57.582 36.000 0.00 0.00 0.00 3.02
7699 8468 7.418337 TTCCAACTAGATGCATAACTACTGA 57.582 36.000 0.00 0.00 0.00 3.41
7700 8469 8.668510 AATTCCAACTAGATGCATAACTACTG 57.331 34.615 0.00 0.00 0.00 2.74
7701 8470 9.331282 GAAATTCCAACTAGATGCATAACTACT 57.669 33.333 0.00 0.00 0.00 2.57
7702 8471 9.109393 TGAAATTCCAACTAGATGCATAACTAC 57.891 33.333 0.00 0.00 0.00 2.73
7703 8472 9.851686 ATGAAATTCCAACTAGATGCATAACTA 57.148 29.630 0.00 0.00 0.00 2.24
7704 8473 8.757982 ATGAAATTCCAACTAGATGCATAACT 57.242 30.769 0.00 0.00 0.00 2.24
7705 8474 9.807649 AAATGAAATTCCAACTAGATGCATAAC 57.192 29.630 0.00 0.00 33.67 1.89
7707 8476 9.412460 AGAAATGAAATTCCAACTAGATGCATA 57.588 29.630 0.00 0.00 33.67 3.14
7708 8477 8.302515 AGAAATGAAATTCCAACTAGATGCAT 57.697 30.769 0.00 0.00 33.67 3.96
7709 8478 7.707624 AGAAATGAAATTCCAACTAGATGCA 57.292 32.000 0.00 0.00 33.67 3.96
7710 8479 8.992835 AAAGAAATGAAATTCCAACTAGATGC 57.007 30.769 0.00 0.00 33.67 3.91
7715 8484 9.260002 GCTCAAAAAGAAATGAAATTCCAACTA 57.740 29.630 0.00 0.00 33.67 2.24
7716 8485 7.769970 TGCTCAAAAAGAAATGAAATTCCAACT 59.230 29.630 0.00 0.00 33.67 3.16
7717 8486 7.918643 TGCTCAAAAAGAAATGAAATTCCAAC 58.081 30.769 0.00 0.00 33.67 3.77
7718 8487 8.561212 CATGCTCAAAAAGAAATGAAATTCCAA 58.439 29.630 0.00 0.00 33.67 3.53
7719 8488 7.716123 ACATGCTCAAAAAGAAATGAAATTCCA 59.284 29.630 0.00 0.00 33.67 3.53
7720 8489 8.091385 ACATGCTCAAAAAGAAATGAAATTCC 57.909 30.769 0.00 0.00 33.67 3.01
7723 8492 9.932207 TGATACATGCTCAAAAAGAAATGAAAT 57.068 25.926 0.00 0.00 0.00 2.17
7724 8493 9.932207 ATGATACATGCTCAAAAAGAAATGAAA 57.068 25.926 2.97 0.00 0.00 2.69
7725 8494 9.361315 CATGATACATGCTCAAAAAGAAATGAA 57.639 29.630 2.97 0.00 0.00 2.57
7726 8495 7.977293 CCATGATACATGCTCAAAAAGAAATGA 59.023 33.333 0.00 0.00 0.00 2.57
7727 8496 7.762615 ACCATGATACATGCTCAAAAAGAAATG 59.237 33.333 0.00 0.00 0.00 2.32
7728 8497 7.844009 ACCATGATACATGCTCAAAAAGAAAT 58.156 30.769 0.00 0.00 0.00 2.17
7729 8498 7.177216 AGACCATGATACATGCTCAAAAAGAAA 59.823 33.333 0.00 0.00 0.00 2.52
7730 8499 6.660521 AGACCATGATACATGCTCAAAAAGAA 59.339 34.615 0.00 0.00 0.00 2.52
7731 8500 6.182627 AGACCATGATACATGCTCAAAAAGA 58.817 36.000 0.00 0.00 0.00 2.52
7732 8501 6.446781 AGACCATGATACATGCTCAAAAAG 57.553 37.500 0.00 0.00 0.00 2.27
7733 8502 8.523915 AATAGACCATGATACATGCTCAAAAA 57.476 30.769 0.00 0.00 0.00 1.94
7734 8503 8.523915 AAATAGACCATGATACATGCTCAAAA 57.476 30.769 0.00 0.00 0.00 2.44
7735 8504 7.994911 AGAAATAGACCATGATACATGCTCAAA 59.005 33.333 0.00 0.00 0.00 2.69
7736 8505 7.443272 CAGAAATAGACCATGATACATGCTCAA 59.557 37.037 0.00 0.00 0.00 3.02
7737 8506 6.932960 CAGAAATAGACCATGATACATGCTCA 59.067 38.462 0.00 0.00 0.00 4.26
7738 8507 6.933521 ACAGAAATAGACCATGATACATGCTC 59.066 38.462 0.00 3.20 0.00 4.26
7739 8508 6.835174 ACAGAAATAGACCATGATACATGCT 58.165 36.000 0.00 2.65 0.00 3.79
7740 8509 7.502120 AACAGAAATAGACCATGATACATGC 57.498 36.000 0.00 0.00 0.00 4.06
7750 8519 9.537852 TCCTACTTAGTTAACAGAAATAGACCA 57.462 33.333 8.61 0.00 0.00 4.02
7769 8538 9.794719 GGTTAAGCAATATTCCTATTCCTACTT 57.205 33.333 0.00 0.00 0.00 2.24
7770 8539 8.095169 CGGTTAAGCAATATTCCTATTCCTACT 58.905 37.037 5.38 0.00 0.00 2.57
7771 8540 8.092687 TCGGTTAAGCAATATTCCTATTCCTAC 58.907 37.037 5.38 0.00 0.00 3.18
7772 8541 8.197592 TCGGTTAAGCAATATTCCTATTCCTA 57.802 34.615 5.38 0.00 0.00 2.94
7773 8542 7.074653 TCGGTTAAGCAATATTCCTATTCCT 57.925 36.000 5.38 0.00 0.00 3.36
7774 8543 6.128254 GCTCGGTTAAGCAATATTCCTATTCC 60.128 42.308 5.38 0.00 42.05 3.01
7775 8544 6.651225 AGCTCGGTTAAGCAATATTCCTATTC 59.349 38.462 5.38 0.00 45.00 1.75
7776 8545 6.534634 AGCTCGGTTAAGCAATATTCCTATT 58.465 36.000 5.38 0.00 45.00 1.73
7777 8546 6.115448 AGCTCGGTTAAGCAATATTCCTAT 57.885 37.500 5.38 0.00 45.00 2.57
7778 8547 5.546621 AGCTCGGTTAAGCAATATTCCTA 57.453 39.130 5.38 0.00 45.00 2.94
7779 8548 4.423625 AGCTCGGTTAAGCAATATTCCT 57.576 40.909 5.38 0.00 45.00 3.36
7780 8549 5.390991 GCATAGCTCGGTTAAGCAATATTCC 60.391 44.000 5.38 0.00 45.00 3.01
7781 8550 5.409826 AGCATAGCTCGGTTAAGCAATATTC 59.590 40.000 5.38 0.00 45.00 1.75
7782 8551 5.308825 AGCATAGCTCGGTTAAGCAATATT 58.691 37.500 5.38 0.00 45.00 1.28
7783 8552 4.899502 AGCATAGCTCGGTTAAGCAATAT 58.100 39.130 5.38 0.00 45.00 1.28
7784 8553 4.336889 AGCATAGCTCGGTTAAGCAATA 57.663 40.909 5.38 0.00 45.00 1.90
7785 8554 3.199880 AGCATAGCTCGGTTAAGCAAT 57.800 42.857 5.38 0.00 45.00 3.56
7786 8555 2.691409 AGCATAGCTCGGTTAAGCAA 57.309 45.000 5.38 0.00 45.00 3.91
7787 8556 2.691409 AAGCATAGCTCGGTTAAGCA 57.309 45.000 5.38 0.00 45.00 3.91
7788 8557 3.374058 TCAAAAGCATAGCTCGGTTAAGC 59.626 43.478 0.00 0.00 38.25 3.09
7817 8586 4.563140 TTGGCCCTATAGTTTCGAGTTT 57.437 40.909 0.00 0.00 0.00 2.66
7822 8591 5.576447 AACATTTTGGCCCTATAGTTTCG 57.424 39.130 0.00 0.00 0.00 3.46
7823 8592 6.092122 GCAAAACATTTTGGCCCTATAGTTTC 59.908 38.462 16.66 0.00 45.73 2.78
7824 8593 5.937540 GCAAAACATTTTGGCCCTATAGTTT 59.062 36.000 16.66 3.46 45.73 2.66
7825 8594 5.248248 AGCAAAACATTTTGGCCCTATAGTT 59.752 36.000 16.66 0.00 45.73 2.24
7826 8595 4.777366 AGCAAAACATTTTGGCCCTATAGT 59.223 37.500 16.66 0.00 45.73 2.12
7827 8596 5.343307 AGCAAAACATTTTGGCCCTATAG 57.657 39.130 16.66 0.00 45.73 1.31
7828 8597 5.362430 CCTAGCAAAACATTTTGGCCCTATA 59.638 40.000 16.66 0.00 45.73 1.31
7829 8598 4.162131 CCTAGCAAAACATTTTGGCCCTAT 59.838 41.667 16.66 0.00 45.73 2.57
7830 8599 3.513515 CCTAGCAAAACATTTTGGCCCTA 59.486 43.478 16.66 9.73 45.73 3.53
7831 8600 2.302733 CCTAGCAAAACATTTTGGCCCT 59.697 45.455 16.66 9.20 45.73 5.19
7832 8601 2.698803 CCTAGCAAAACATTTTGGCCC 58.301 47.619 16.66 3.00 45.73 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.