Multiple sequence alignment - TraesCS5B01G073800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G073800 chr5B 100.000 5627 0 0 1 5627 87966897 87972523 0.000000e+00 10392.0
1 TraesCS5B01G073800 chr5B 91.387 2415 145 18 538 2913 87763594 87765984 0.000000e+00 3249.0
2 TraesCS5B01G073800 chr5B 90.802 2207 111 31 3408 5550 87766287 87768465 0.000000e+00 2867.0
3 TraesCS5B01G073800 chr5B 88.190 1702 161 14 1214 2909 87650101 87651768 0.000000e+00 1993.0
4 TraesCS5B01G073800 chr5B 81.990 1377 180 35 3466 4805 87293945 87295290 0.000000e+00 1107.0
5 TraesCS5B01G073800 chr5B 86.742 792 97 4 3076 3867 87651770 87652553 0.000000e+00 874.0
6 TraesCS5B01G073800 chr5B 91.466 457 38 1 1724 2180 87291075 87291530 1.330000e-175 627.0
7 TraesCS5B01G073800 chr5B 81.275 753 120 7 3926 4676 87652583 87653316 1.750000e-164 590.0
8 TraesCS5B01G073800 chr5B 88.174 482 54 2 2402 2881 87292932 87293412 6.320000e-159 571.0
9 TraesCS5B01G073800 chr5B 83.824 612 35 24 567 1155 87649295 87649865 1.800000e-144 523.0
10 TraesCS5B01G073800 chr5B 87.310 394 43 3 3076 3469 87293440 87293826 1.440000e-120 444.0
11 TraesCS5B01G073800 chr5B 92.157 306 24 0 3072 3377 87765983 87766288 3.110000e-117 433.0
12 TraesCS5B01G073800 chr5B 85.503 338 24 5 195 528 87763231 87763547 4.200000e-86 329.0
13 TraesCS5B01G073800 chr5B 80.000 430 51 10 1006 1420 87290464 87290873 9.230000e-73 285.0
14 TraesCS5B01G073800 chr5B 96.552 145 5 0 1 145 638598985 638598841 2.030000e-59 241.0
15 TraesCS5B01G073800 chr5B 80.495 323 42 15 4812 5123 87295329 87295641 1.580000e-55 228.0
16 TraesCS5B01G073800 chr5B 87.069 116 11 3 648 761 87289830 87289943 1.650000e-25 128.0
17 TraesCS5B01G073800 chr5B 85.714 112 15 1 1068 1178 87649990 87650101 3.560000e-22 117.0
18 TraesCS5B01G073800 chr5D 93.187 2407 108 23 533 2913 78051366 78053742 0.000000e+00 3485.0
19 TraesCS5B01G073800 chr5D 93.143 1925 87 17 3421 5313 78054054 78055965 0.000000e+00 2782.0
20 TraesCS5B01G073800 chr5D 90.177 1303 124 3 1610 2909 78010360 78011661 0.000000e+00 1694.0
21 TraesCS5B01G073800 chr5D 79.730 1702 250 56 3469 5123 77738895 77740548 0.000000e+00 1144.0
22 TraesCS5B01G073800 chr5D 86.990 784 91 5 3076 3859 78011663 78012435 0.000000e+00 872.0
23 TraesCS5B01G073800 chr5D 88.218 679 73 6 2235 2908 77737708 77738384 0.000000e+00 804.0
24 TraesCS5B01G073800 chr5D 91.552 509 22 8 663 1155 78008878 78009381 0.000000e+00 682.0
25 TraesCS5B01G073800 chr5D 91.028 457 40 1 1724 2180 77737252 77737707 2.880000e-172 616.0
26 TraesCS5B01G073800 chr5D 92.484 306 23 0 3072 3377 78053741 78054046 6.690000e-119 438.0
27 TraesCS5B01G073800 chr5D 87.023 393 44 3 3076 3468 77738388 77738773 2.410000e-118 436.0
28 TraesCS5B01G073800 chr5D 83.373 421 57 8 1070 1481 78009466 78009882 1.480000e-100 377.0
29 TraesCS5B01G073800 chr5D 90.756 238 16 1 291 528 78051092 78051323 4.230000e-81 313.0
30 TraesCS5B01G073800 chr5D 89.151 212 18 2 1445 1655 77737045 77737252 5.590000e-65 259.0
31 TraesCS5B01G073800 chr5D 89.617 183 11 8 2903 3082 383645492 383645315 5.670000e-55 226.0
32 TraesCS5B01G073800 chr5D 85.606 132 14 4 1289 1420 77736924 77737050 3.540000e-27 134.0
33 TraesCS5B01G073800 chr5D 86.735 98 9 2 430 527 78008249 78008342 7.710000e-19 106.0
34 TraesCS5B01G073800 chr5D 91.429 70 6 0 5555 5624 78056011 78056080 4.640000e-16 97.1
35 TraesCS5B01G073800 chr5D 89.041 73 8 0 648 720 77735863 77735935 2.160000e-14 91.6
36 TraesCS5B01G073800 chr5A 92.335 2283 126 17 659 2913 74671141 74673402 0.000000e+00 3201.0
37 TraesCS5B01G073800 chr5A 95.966 1661 52 8 3408 5058 74673705 74675360 0.000000e+00 2682.0
38 TraesCS5B01G073800 chr5A 90.790 1303 113 4 1610 2909 74590201 74591499 0.000000e+00 1735.0
39 TraesCS5B01G073800 chr5A 83.261 1607 232 18 3076 4676 74591501 74593076 0.000000e+00 1443.0
40 TraesCS5B01G073800 chr5A 83.538 1221 166 20 3466 4676 74497802 74498997 0.000000e+00 1109.0
41 TraesCS5B01G073800 chr5A 87.250 651 78 4 2235 2881 74496621 74497270 0.000000e+00 737.0
42 TraesCS5B01G073800 chr5A 91.247 457 39 1 1724 2180 74496165 74496620 6.190000e-174 621.0
43 TraesCS5B01G073800 chr5A 89.038 520 30 8 648 1155 74589100 74589604 2.230000e-173 619.0
44 TraesCS5B01G073800 chr5A 85.797 521 65 7 1068 1583 74589686 74590202 1.380000e-150 544.0
45 TraesCS5B01G073800 chr5A 87.023 393 44 3 3076 3468 74497298 74497683 2.410000e-118 436.0
46 TraesCS5B01G073800 chr5A 90.850 306 28 0 3072 3377 74673401 74673706 1.460000e-110 411.0
47 TraesCS5B01G073800 chr5A 88.208 212 20 2 1445 1655 74495958 74496165 1.210000e-61 248.0
48 TraesCS5B01G073800 chr5A 80.805 323 38 17 4813 5123 74499218 74499528 1.220000e-56 231.0
49 TraesCS5B01G073800 chr5A 86.364 132 13 2 1289 1420 74495837 74495963 7.600000e-29 139.0
50 TraesCS5B01G073800 chr5A 79.144 187 25 8 560 745 74494895 74495068 3.560000e-22 117.0
51 TraesCS5B01G073800 chr5A 92.063 63 3 2 202 263 74670277 74670338 2.790000e-13 87.9
52 TraesCS5B01G073800 chr5A 87.143 70 1 3 5415 5484 74676264 74676325 7.820000e-09 73.1
53 TraesCS5B01G073800 chr1D 88.829 555 56 4 1365 1917 16107289 16106739 0.000000e+00 676.0
54 TraesCS5B01G073800 chr1D 91.279 172 12 3 2904 3074 187811380 187811549 1.220000e-56 231.0
55 TraesCS5B01G073800 chr1D 91.566 166 14 0 2909 3074 463381902 463382067 4.380000e-56 230.0
56 TraesCS5B01G073800 chrUn 86.587 589 72 4 1365 1950 45881375 45881959 1.320000e-180 643.0
57 TraesCS5B01G073800 chr6B 97.163 141 4 0 1 141 33723946 33724086 7.290000e-59 239.0
58 TraesCS5B01G073800 chr7B 96.454 141 5 0 1 141 97512984 97513124 3.390000e-57 233.0
59 TraesCS5B01G073800 chr3D 91.716 169 13 1 2907 3075 537154867 537154700 3.390000e-57 233.0
60 TraesCS5B01G073800 chr7D 91.716 169 11 3 2907 3074 29568809 29568643 1.220000e-56 231.0
61 TraesCS5B01G073800 chr7D 92.121 165 12 1 2911 3075 530857974 530858137 1.220000e-56 231.0
62 TraesCS5B01G073800 chr4D 91.279 172 12 3 2904 3074 403011909 403012078 1.220000e-56 231.0
63 TraesCS5B01G073800 chr7A 95.139 144 7 0 1 144 34319913 34319770 1.580000e-55 228.0
64 TraesCS5B01G073800 chr6A 91.124 169 14 1 2911 3079 101317398 101317231 1.580000e-55 228.0
65 TraesCS5B01G073800 chr3B 90.116 172 16 1 2902 3073 785772385 785772555 7.340000e-54 222.0
66 TraesCS5B01G073800 chr2B 81.633 147 18 5 12 154 29709862 29709721 4.610000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G073800 chr5B 87966897 87972523 5626 False 10392.000000 10392 100.000000 1 5627 1 chr5B.!!$F1 5626
1 TraesCS5B01G073800 chr5B 87763231 87768465 5234 False 1719.500000 3249 89.962250 195 5550 4 chr5B.!!$F4 5355
2 TraesCS5B01G073800 chr5B 87649295 87653316 4021 False 819.400000 1993 85.149000 567 4676 5 chr5B.!!$F3 4109
3 TraesCS5B01G073800 chr5B 87289830 87295641 5811 False 484.285714 1107 85.214857 648 5123 7 chr5B.!!$F2 4475
4 TraesCS5B01G073800 chr5D 78051092 78056080 4988 False 1423.020000 3485 92.199800 291 5624 5 chr5D.!!$F3 5333
5 TraesCS5B01G073800 chr5D 78008249 78012435 4186 False 746.200000 1694 87.765400 430 3859 5 chr5D.!!$F2 3429
6 TraesCS5B01G073800 chr5D 77735863 77740548 4685 False 497.800000 1144 87.113857 648 5123 7 chr5D.!!$F1 4475
7 TraesCS5B01G073800 chr5A 74670277 74676325 6048 False 1291.000000 3201 91.671400 202 5484 5 chr5A.!!$F3 5282
8 TraesCS5B01G073800 chr5A 74589100 74593076 3976 False 1085.250000 1735 87.221500 648 4676 4 chr5A.!!$F2 4028
9 TraesCS5B01G073800 chr5A 74494895 74499528 4633 False 454.750000 1109 85.447375 560 5123 8 chr5A.!!$F1 4563
10 TraesCS5B01G073800 chr1D 16106739 16107289 550 True 676.000000 676 88.829000 1365 1917 1 chr1D.!!$R1 552
11 TraesCS5B01G073800 chrUn 45881375 45881959 584 False 643.000000 643 86.587000 1365 1950 1 chrUn.!!$F1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.107848 AGTCCGCCAAACCCTAATCG 60.108 55.0 0.00 0.00 0.00 3.34 F
164 165 0.179032 TCTTCCAAGCAACGCAGGAA 60.179 50.0 10.99 10.99 40.66 3.36 F
190 191 0.250338 GGAAAACTCCGTGAGCACCT 60.250 55.0 1.36 0.00 32.04 4.00 F
502 509 0.254178 AGATAAGTGGTGCCCTGCTG 59.746 55.0 0.00 0.00 0.00 4.41 F
2218 4322 0.382158 CTGCTGAGCGGAAGACGATA 59.618 55.0 7.70 0.00 43.91 2.92 F
2902 6244 0.031994 GGGTTGCGTGCACATTTTCT 59.968 50.0 18.64 0.00 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2038 4142 2.093606 AGGAAGTAGCCCGCTTTTAGTC 60.094 50.0 0.00 0.00 0.00 2.59 R
2075 4179 5.532406 CAGAACTTTGAAGTGAGAATTCCCA 59.468 40.0 0.65 0.00 39.66 4.37 R
2183 4287 0.867753 GCAGCGATCGATCAAGACGT 60.868 55.0 24.40 0.00 0.00 4.34 R
2385 4489 2.698855 AGACATTTCATCAGGACGGG 57.301 50.0 0.00 0.00 0.00 5.28 R
3186 6529 0.323360 GCACCCCATTGCTAGGACAA 60.323 55.0 0.00 0.00 39.59 3.18 R
4706 8232 1.305201 ACGGCCACACAACTAGTTTG 58.695 50.0 5.07 10.29 41.49 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 4.176752 GGGTGTCGCCATCCTCCC 62.177 72.222 4.48 0.00 38.95 4.30
46 47 4.530857 GGTGTCGCCATCCTCCCG 62.531 72.222 0.00 0.00 37.17 5.14
47 48 3.771160 GTGTCGCCATCCTCCCGT 61.771 66.667 0.00 0.00 0.00 5.28
48 49 3.458163 TGTCGCCATCCTCCCGTC 61.458 66.667 0.00 0.00 0.00 4.79
49 50 4.222847 GTCGCCATCCTCCCGTCC 62.223 72.222 0.00 0.00 0.00 4.79
62 63 4.796231 CGTCCGGCGGAACTCTGG 62.796 72.222 32.91 11.81 41.84 3.86
63 64 3.692406 GTCCGGCGGAACTCTGGT 61.692 66.667 32.91 0.00 41.12 4.00
64 65 3.691342 TCCGGCGGAACTCTGGTG 61.691 66.667 29.11 0.00 41.12 4.17
65 66 4.003788 CCGGCGGAACTCTGGTGT 62.004 66.667 24.41 0.00 34.30 4.16
66 67 2.738521 CGGCGGAACTCTGGTGTG 60.739 66.667 0.00 0.00 0.00 3.82
67 68 3.050275 GGCGGAACTCTGGTGTGC 61.050 66.667 0.00 0.00 0.00 4.57
68 69 3.050275 GCGGAACTCTGGTGTGCC 61.050 66.667 0.00 0.00 32.22 5.01
69 70 2.358737 CGGAACTCTGGTGTGCCC 60.359 66.667 0.00 0.00 31.85 5.36
70 71 2.034221 GGAACTCTGGTGTGCCCC 59.966 66.667 0.00 0.00 29.17 5.80
71 72 2.358737 GAACTCTGGTGTGCCCCG 60.359 66.667 0.00 0.00 0.00 5.73
72 73 4.643387 AACTCTGGTGTGCCCCGC 62.643 66.667 0.00 0.00 0.00 6.13
84 85 4.363990 CCCCGCCGATCCGATCTG 62.364 72.222 6.81 1.28 0.00 2.90
88 89 3.032609 GCCGATCCGATCTGCGTG 61.033 66.667 8.78 0.00 38.67 5.34
89 90 2.721859 CCGATCCGATCTGCGTGA 59.278 61.111 6.81 0.00 38.67 4.35
90 91 1.371022 CCGATCCGATCTGCGTGAG 60.371 63.158 6.81 0.00 38.67 3.51
106 107 4.947147 AGCCGCAAGTCCGCCAAA 62.947 61.111 0.00 0.00 0.00 3.28
107 108 4.700365 GCCGCAAGTCCGCCAAAC 62.700 66.667 0.00 0.00 0.00 2.93
108 109 4.038080 CCGCAAGTCCGCCAAACC 62.038 66.667 0.00 0.00 0.00 3.27
109 110 4.038080 CGCAAGTCCGCCAAACCC 62.038 66.667 0.00 0.00 0.00 4.11
110 111 2.597510 GCAAGTCCGCCAAACCCT 60.598 61.111 0.00 0.00 0.00 4.34
111 112 1.302993 GCAAGTCCGCCAAACCCTA 60.303 57.895 0.00 0.00 0.00 3.53
112 113 0.891904 GCAAGTCCGCCAAACCCTAA 60.892 55.000 0.00 0.00 0.00 2.69
113 114 1.834188 CAAGTCCGCCAAACCCTAAT 58.166 50.000 0.00 0.00 0.00 1.73
114 115 1.743394 CAAGTCCGCCAAACCCTAATC 59.257 52.381 0.00 0.00 0.00 1.75
115 116 0.107848 AGTCCGCCAAACCCTAATCG 60.108 55.000 0.00 0.00 0.00 3.34
116 117 1.450669 TCCGCCAAACCCTAATCGC 60.451 57.895 0.00 0.00 0.00 4.58
117 118 2.478033 CCGCCAAACCCTAATCGCC 61.478 63.158 0.00 0.00 0.00 5.54
118 119 1.747367 CGCCAAACCCTAATCGCCA 60.747 57.895 0.00 0.00 0.00 5.69
119 120 1.714899 CGCCAAACCCTAATCGCCAG 61.715 60.000 0.00 0.00 0.00 4.85
120 121 0.393808 GCCAAACCCTAATCGCCAGA 60.394 55.000 0.00 0.00 0.00 3.86
121 122 1.668419 CCAAACCCTAATCGCCAGAG 58.332 55.000 0.00 0.00 0.00 3.35
122 123 1.017387 CAAACCCTAATCGCCAGAGC 58.983 55.000 0.00 0.00 0.00 4.09
132 133 4.716003 GCCAGAGCGTTTTAGGGT 57.284 55.556 0.00 0.00 0.00 4.34
133 134 2.942641 GCCAGAGCGTTTTAGGGTT 58.057 52.632 0.00 0.00 0.00 4.11
134 135 1.244816 GCCAGAGCGTTTTAGGGTTT 58.755 50.000 0.00 0.00 0.00 3.27
135 136 1.199327 GCCAGAGCGTTTTAGGGTTTC 59.801 52.381 0.00 0.00 0.00 2.78
136 137 1.810755 CCAGAGCGTTTTAGGGTTTCC 59.189 52.381 0.00 0.00 0.00 3.13
137 138 1.463444 CAGAGCGTTTTAGGGTTTCCG 59.537 52.381 0.00 0.00 38.33 4.30
138 139 0.800631 GAGCGTTTTAGGGTTTCCGG 59.199 55.000 0.00 0.00 38.33 5.14
139 140 0.397564 AGCGTTTTAGGGTTTCCGGA 59.602 50.000 0.00 0.00 38.33 5.14
140 141 1.202794 AGCGTTTTAGGGTTTCCGGAA 60.203 47.619 14.35 14.35 38.33 4.30
141 142 1.814394 GCGTTTTAGGGTTTCCGGAAT 59.186 47.619 19.62 5.36 38.33 3.01
142 143 3.009026 GCGTTTTAGGGTTTCCGGAATA 58.991 45.455 19.62 4.21 38.33 1.75
143 144 3.439825 GCGTTTTAGGGTTTCCGGAATAA 59.560 43.478 19.62 10.78 38.33 1.40
144 145 4.672542 GCGTTTTAGGGTTTCCGGAATAAC 60.673 45.833 19.62 14.22 38.33 1.89
145 146 4.696877 CGTTTTAGGGTTTCCGGAATAACT 59.303 41.667 19.62 17.46 38.33 2.24
146 147 5.163824 CGTTTTAGGGTTTCCGGAATAACTC 60.164 44.000 19.62 14.47 38.33 3.01
147 148 5.767277 TTTAGGGTTTCCGGAATAACTCT 57.233 39.130 22.01 22.01 38.56 3.24
148 149 5.767277 TTAGGGTTTCCGGAATAACTCTT 57.233 39.130 23.20 10.27 36.52 2.85
149 150 4.217836 AGGGTTTCCGGAATAACTCTTC 57.782 45.455 19.62 1.25 31.10 2.87
150 151 3.054582 AGGGTTTCCGGAATAACTCTTCC 60.055 47.826 19.62 10.40 41.16 3.46
151 152 3.307904 GGGTTTCCGGAATAACTCTTCCA 60.308 47.826 19.62 0.00 44.18 3.53
152 153 4.329392 GGTTTCCGGAATAACTCTTCCAA 58.671 43.478 19.62 0.00 44.18 3.53
153 154 4.395231 GGTTTCCGGAATAACTCTTCCAAG 59.605 45.833 19.62 0.00 44.18 3.61
154 155 3.261981 TCCGGAATAACTCTTCCAAGC 57.738 47.619 0.00 0.00 44.18 4.01
155 156 2.569853 TCCGGAATAACTCTTCCAAGCA 59.430 45.455 0.00 0.00 44.18 3.91
156 157 3.008594 TCCGGAATAACTCTTCCAAGCAA 59.991 43.478 0.00 0.00 44.18 3.91
157 158 3.127030 CCGGAATAACTCTTCCAAGCAAC 59.873 47.826 0.00 0.00 44.18 4.17
158 159 3.181520 CGGAATAACTCTTCCAAGCAACG 60.182 47.826 3.95 0.00 44.18 4.10
159 160 3.426292 GGAATAACTCTTCCAAGCAACGC 60.426 47.826 0.00 0.00 43.56 4.84
160 161 2.248280 TAACTCTTCCAAGCAACGCA 57.752 45.000 0.00 0.00 0.00 5.24
161 162 0.947244 AACTCTTCCAAGCAACGCAG 59.053 50.000 0.00 0.00 0.00 5.18
162 163 0.886490 ACTCTTCCAAGCAACGCAGG 60.886 55.000 0.00 0.00 0.00 4.85
163 164 0.603707 CTCTTCCAAGCAACGCAGGA 60.604 55.000 0.00 0.00 34.24 3.86
164 165 0.179032 TCTTCCAAGCAACGCAGGAA 60.179 50.000 10.99 10.99 40.66 3.36
165 166 0.667993 CTTCCAAGCAACGCAGGAAA 59.332 50.000 12.12 0.89 41.69 3.13
166 167 1.066908 CTTCCAAGCAACGCAGGAAAA 59.933 47.619 12.12 0.00 41.69 2.29
167 168 1.107114 TCCAAGCAACGCAGGAAAAA 58.893 45.000 0.00 0.00 33.41 1.94
168 169 1.066908 TCCAAGCAACGCAGGAAAAAG 59.933 47.619 0.00 0.00 33.41 2.27
169 170 1.202405 CCAAGCAACGCAGGAAAAAGT 60.202 47.619 0.00 0.00 0.00 2.66
170 171 2.539476 CAAGCAACGCAGGAAAAAGTT 58.461 42.857 0.00 0.00 0.00 2.66
171 172 2.208326 AGCAACGCAGGAAAAAGTTG 57.792 45.000 3.15 3.15 44.66 3.16
172 173 1.202405 AGCAACGCAGGAAAAAGTTGG 60.202 47.619 8.87 0.00 42.80 3.77
173 174 1.202359 GCAACGCAGGAAAAAGTTGGA 60.202 47.619 8.87 0.00 42.80 3.53
174 175 2.737039 GCAACGCAGGAAAAAGTTGGAA 60.737 45.455 8.87 0.00 42.80 3.53
175 176 3.516615 CAACGCAGGAAAAAGTTGGAAA 58.483 40.909 0.00 0.00 39.95 3.13
176 177 3.878160 ACGCAGGAAAAAGTTGGAAAA 57.122 38.095 0.00 0.00 0.00 2.29
177 178 3.517602 ACGCAGGAAAAAGTTGGAAAAC 58.482 40.909 0.00 0.00 0.00 2.43
178 179 3.194755 ACGCAGGAAAAAGTTGGAAAACT 59.805 39.130 0.00 0.00 33.76 2.66
179 180 3.796717 CGCAGGAAAAAGTTGGAAAACTC 59.203 43.478 0.00 0.00 31.53 3.01
180 181 4.119862 GCAGGAAAAAGTTGGAAAACTCC 58.880 43.478 0.00 0.00 31.53 3.85
181 182 4.359706 CAGGAAAAAGTTGGAAAACTCCG 58.640 43.478 0.00 0.00 31.53 4.63
182 183 4.021229 AGGAAAAAGTTGGAAAACTCCGT 58.979 39.130 0.00 0.00 31.53 4.69
183 184 4.109766 GGAAAAAGTTGGAAAACTCCGTG 58.890 43.478 0.00 0.00 31.53 4.94
184 185 4.142337 GGAAAAAGTTGGAAAACTCCGTGA 60.142 41.667 0.00 0.00 31.53 4.35
185 186 4.632538 AAAAGTTGGAAAACTCCGTGAG 57.367 40.909 0.03 0.03 35.52 3.51
186 187 1.594331 AGTTGGAAAACTCCGTGAGC 58.406 50.000 1.36 0.00 32.04 4.26
187 188 1.134220 AGTTGGAAAACTCCGTGAGCA 60.134 47.619 1.36 0.00 32.04 4.26
188 189 1.002792 GTTGGAAAACTCCGTGAGCAC 60.003 52.381 1.36 0.00 32.04 4.40
189 190 0.534203 TGGAAAACTCCGTGAGCACC 60.534 55.000 1.36 0.00 32.04 5.01
190 191 0.250338 GGAAAACTCCGTGAGCACCT 60.250 55.000 1.36 0.00 32.04 4.00
191 192 0.868406 GAAAACTCCGTGAGCACCTG 59.132 55.000 1.36 0.00 32.04 4.00
192 193 0.535102 AAAACTCCGTGAGCACCTGG 60.535 55.000 0.00 0.00 32.04 4.45
193 194 1.696097 AAACTCCGTGAGCACCTGGT 61.696 55.000 0.00 0.00 32.04 4.00
197 198 2.126307 CGTGAGCACCTGGTCGAG 60.126 66.667 0.00 0.00 44.88 4.04
200 201 3.695606 GAGCACCTGGTCGAGCCA 61.696 66.667 12.85 9.22 46.95 4.75
288 293 2.908015 GCTCCCGCCTTCCATGTA 59.092 61.111 0.00 0.00 0.00 2.29
296 301 1.153168 CCTTCCATGTACCAGCGGG 60.153 63.158 0.00 0.00 41.29 6.13
463 470 8.046107 CCCTGAAAGATTCTTTCTGATTAGACT 58.954 37.037 31.56 3.72 34.07 3.24
464 471 8.881743 CCTGAAAGATTCTTTCTGATTAGACTG 58.118 37.037 31.56 17.24 34.07 3.51
502 509 0.254178 AGATAAGTGGTGCCCTGCTG 59.746 55.000 0.00 0.00 0.00 4.41
528 535 4.224433 TCACTCGATTCGACACTGTAAAC 58.776 43.478 4.29 0.00 0.00 2.01
529 536 3.978855 CACTCGATTCGACACTGTAAACA 59.021 43.478 4.29 0.00 0.00 2.83
531 538 5.118664 CACTCGATTCGACACTGTAAACAAT 59.881 40.000 4.29 0.00 0.00 2.71
599 649 6.483307 TGTTGTTCTGTTCTTTGGAGTGATAG 59.517 38.462 0.00 0.00 0.00 2.08
619 676 8.834465 GTGATAGATGATGTACATTTTGAGCTT 58.166 33.333 10.30 0.00 39.56 3.74
687 1580 8.450964 ACAATGTAGAATTTCTTGTAACATCCG 58.549 33.333 3.86 6.18 0.00 4.18
818 1738 4.459337 ACTCCTTGGCATTGCTAAAAGTAC 59.541 41.667 16.07 0.00 28.79 2.73
820 1740 3.438781 CCTTGGCATTGCTAAAAGTACGA 59.561 43.478 8.84 0.00 0.00 3.43
843 1769 7.281774 ACGAAAAATGATTCTAGCAGATGTCAT 59.718 33.333 0.00 0.00 33.89 3.06
949 1880 2.159000 ACGAGACTCCTTTTTCAACCGT 60.159 45.455 0.00 0.00 0.00 4.83
1125 2150 8.318412 TCTACTCTCTACATCCTTAGAGCATAG 58.682 40.741 2.78 6.70 43.40 2.23
1155 2180 6.238566 GCTGCAGCTTAAGATCATGTTTATGA 60.239 38.462 31.33 0.00 41.69 2.15
1186 2729 4.396166 CAGGAACCTAAAGTGCATACCTTG 59.604 45.833 0.00 0.00 0.00 3.61
1440 3033 7.915397 ACTGAAGTGCATACTTTACTTTTTGTG 59.085 33.333 0.00 0.00 46.79 3.33
1748 3849 7.039011 TGTCATATGGATGATACCCAGAAGTAC 60.039 40.741 2.13 0.00 43.95 2.73
1910 4014 5.105392 TCCACAGAAGTTTGTGCAGAATTTT 60.105 36.000 0.00 0.00 45.52 1.82
1922 4026 7.288810 TGTGCAGAATTTTAAAGGTCAGATT 57.711 32.000 0.00 0.00 0.00 2.40
2000 4104 9.771534 GCTATCAAGGATCTAAACAAGATAGTT 57.228 33.333 0.00 0.00 45.35 2.24
2005 4109 6.508777 AGGATCTAAACAAGATAGTTCTCGC 58.491 40.000 0.00 0.00 45.35 5.03
2038 4142 3.128068 GGGGTATTTGTCAGCTTTTACGG 59.872 47.826 0.00 0.00 0.00 4.02
2079 4183 2.571653 CTGGTCTTCAGGTACATTGGGA 59.428 50.000 0.00 0.00 39.76 4.37
2153 4257 3.393800 AGTGTTCCACGTTCTCATGAAG 58.606 45.455 0.00 0.00 39.64 3.02
2183 4287 4.280677 CCTAATGCCCAAGAAAAAGACACA 59.719 41.667 0.00 0.00 0.00 3.72
2218 4322 0.382158 CTGCTGAGCGGAAGACGATA 59.618 55.000 7.70 0.00 43.91 2.92
2252 4356 1.227853 AAGCAACGGTGAGTCCCAC 60.228 57.895 3.55 0.00 44.95 4.61
2312 4416 4.776435 TCACATGGATGATAGGCAGAAA 57.224 40.909 0.00 0.00 0.00 2.52
2385 4489 1.000938 GGATGATCAATGCCTTTCCGC 60.001 52.381 0.00 0.00 0.00 5.54
2416 5756 7.336176 CCTGATGAAATGTCTTCTTGATCAGAA 59.664 37.037 11.31 1.72 38.45 3.02
2497 5839 3.010200 ACAATTTCAGAGGCAGGATCC 57.990 47.619 2.48 2.48 0.00 3.36
2726 6068 1.173043 TTCCGCATTGTCATGAACCC 58.827 50.000 0.00 0.00 31.07 4.11
2747 6089 4.258543 CCCGCTCCTAATGTACAAGAAAA 58.741 43.478 0.00 0.00 0.00 2.29
2748 6090 4.881850 CCCGCTCCTAATGTACAAGAAAAT 59.118 41.667 0.00 0.00 0.00 1.82
2774 6116 9.325248 TGGTATATCTCATGATCAGTTATTCCA 57.675 33.333 0.09 4.16 34.32 3.53
2863 6205 0.612174 TCTGGACTCTCCTTCACCGG 60.612 60.000 0.00 0.00 37.46 5.28
2890 6232 3.506067 AGGTAAAGAATTGAAGGGTTGCG 59.494 43.478 0.00 0.00 0.00 4.85
2893 6235 0.598065 AGAATTGAAGGGTTGCGTGC 59.402 50.000 0.00 0.00 0.00 5.34
2902 6244 0.031994 GGGTTGCGTGCACATTTTCT 59.968 50.000 18.64 0.00 0.00 2.52
2911 6254 4.615912 GCGTGCACATTTTCTTTGGTATCT 60.616 41.667 18.64 0.00 0.00 1.98
2912 6255 5.391523 GCGTGCACATTTTCTTTGGTATCTA 60.392 40.000 18.64 0.00 0.00 1.98
2913 6256 6.021596 CGTGCACATTTTCTTTGGTATCTAC 58.978 40.000 18.64 0.00 0.00 2.59
2914 6257 6.322491 GTGCACATTTTCTTTGGTATCTACC 58.678 40.000 13.17 0.00 46.62 3.18
2915 6258 5.417580 TGCACATTTTCTTTGGTATCTACCC 59.582 40.000 3.98 0.00 45.87 3.69
2916 6259 5.652452 GCACATTTTCTTTGGTATCTACCCT 59.348 40.000 3.98 0.00 45.87 4.34
2917 6260 6.183360 GCACATTTTCTTTGGTATCTACCCTC 60.183 42.308 3.98 0.00 45.87 4.30
2918 6261 7.112779 CACATTTTCTTTGGTATCTACCCTCT 58.887 38.462 3.98 0.00 45.87 3.69
2919 6262 7.281100 CACATTTTCTTTGGTATCTACCCTCTC 59.719 40.741 3.98 0.00 45.87 3.20
2920 6263 7.182930 ACATTTTCTTTGGTATCTACCCTCTCT 59.817 37.037 3.98 0.00 45.87 3.10
2921 6264 6.546428 TTTCTTTGGTATCTACCCTCTCTG 57.454 41.667 3.98 0.00 45.87 3.35
2922 6265 5.208294 TCTTTGGTATCTACCCTCTCTGT 57.792 43.478 3.98 0.00 45.87 3.41
2923 6266 5.590818 TCTTTGGTATCTACCCTCTCTGTT 58.409 41.667 3.98 0.00 45.87 3.16
2924 6267 5.657302 TCTTTGGTATCTACCCTCTCTGTTC 59.343 44.000 3.98 0.00 45.87 3.18
2925 6268 3.912248 TGGTATCTACCCTCTCTGTTCC 58.088 50.000 3.98 0.00 45.87 3.62
2926 6269 3.532232 TGGTATCTACCCTCTCTGTTCCT 59.468 47.826 3.98 0.00 45.87 3.36
2927 6270 4.730392 TGGTATCTACCCTCTCTGTTCCTA 59.270 45.833 3.98 0.00 45.87 2.94
2928 6271 5.195146 TGGTATCTACCCTCTCTGTTCCTAA 59.805 44.000 3.98 0.00 45.87 2.69
2929 6272 6.134754 GGTATCTACCCTCTCTGTTCCTAAA 58.865 44.000 0.00 0.00 40.53 1.85
2930 6273 6.783482 GGTATCTACCCTCTCTGTTCCTAAAT 59.217 42.308 0.00 0.00 40.53 1.40
2931 6274 7.949006 GGTATCTACCCTCTCTGTTCCTAAATA 59.051 40.741 0.00 0.00 40.53 1.40
2932 6275 9.536510 GTATCTACCCTCTCTGTTCCTAAATAT 57.463 37.037 0.00 0.00 0.00 1.28
2935 6278 9.589461 TCTACCCTCTCTGTTCCTAAATATAAG 57.411 37.037 0.00 0.00 0.00 1.73
2936 6279 9.369672 CTACCCTCTCTGTTCCTAAATATAAGT 57.630 37.037 0.00 0.00 0.00 2.24
2937 6280 8.252624 ACCCTCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2938 6281 8.068733 ACCCTCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2939 6282 8.929487 CCCTCTCTGTTCCTAAATATAAGTCTT 58.071 37.037 0.00 0.00 0.00 3.01
2958 6301 8.943909 AAGTCTTTTTAGATATTCCACTACGG 57.056 34.615 0.00 0.00 0.00 4.02
2959 6302 8.302515 AGTCTTTTTAGATATTCCACTACGGA 57.697 34.615 0.00 0.00 44.40 4.69
2960 6303 8.925338 AGTCTTTTTAGATATTCCACTACGGAT 58.075 33.333 0.00 0.00 45.80 4.18
2961 6304 9.543783 GTCTTTTTAGATATTCCACTACGGATT 57.456 33.333 0.00 0.00 45.80 3.01
2969 6312 9.064706 AGATATTCCACTACGGATTATATACGG 57.935 37.037 0.00 0.00 45.80 4.02
2970 6313 8.985315 ATATTCCACTACGGATTATATACGGA 57.015 34.615 0.00 0.00 45.80 4.69
2971 6314 7.707624 ATTCCACTACGGATTATATACGGAA 57.292 36.000 0.00 0.00 45.80 4.30
2972 6315 6.500684 TCCACTACGGATTATATACGGAAC 57.499 41.667 0.00 0.00 42.09 3.62
2973 6316 6.003326 TCCACTACGGATTATATACGGAACA 58.997 40.000 0.00 0.00 42.09 3.18
2974 6317 6.489700 TCCACTACGGATTATATACGGAACAA 59.510 38.462 0.00 0.00 42.09 2.83
2975 6318 7.014134 TCCACTACGGATTATATACGGAACAAA 59.986 37.037 0.00 0.00 42.09 2.83
2976 6319 7.652909 CCACTACGGATTATATACGGAACAAAA 59.347 37.037 0.00 0.00 42.09 2.44
2977 6320 9.199982 CACTACGGATTATATACGGAACAAAAT 57.800 33.333 0.00 0.00 42.09 1.82
2978 6321 9.199982 ACTACGGATTATATACGGAACAAAATG 57.800 33.333 0.00 0.00 42.09 2.32
2979 6322 9.414295 CTACGGATTATATACGGAACAAAATGA 57.586 33.333 0.00 0.00 42.09 2.57
2980 6323 8.306680 ACGGATTATATACGGAACAAAATGAG 57.693 34.615 0.00 0.00 42.09 2.90
2981 6324 7.929785 ACGGATTATATACGGAACAAAATGAGT 59.070 33.333 0.00 0.00 42.09 3.41
2982 6325 8.221100 CGGATTATATACGGAACAAAATGAGTG 58.779 37.037 0.00 0.00 31.49 3.51
2983 6326 9.268268 GGATTATATACGGAACAAAATGAGTGA 57.732 33.333 0.00 0.00 0.00 3.41
2987 6330 8.964476 ATATACGGAACAAAATGAGTGAATCT 57.036 30.769 0.00 0.00 0.00 2.40
2989 6332 6.481954 ACGGAACAAAATGAGTGAATCTAC 57.518 37.500 0.00 0.00 0.00 2.59
2990 6333 5.995282 ACGGAACAAAATGAGTGAATCTACA 59.005 36.000 0.00 0.00 0.00 2.74
2991 6334 6.073222 ACGGAACAAAATGAGTGAATCTACAC 60.073 38.462 0.00 0.00 40.60 2.90
3035 6378 8.780846 ACATCCGTATGTAGTTTGTATTGAAA 57.219 30.769 0.00 0.00 44.66 2.69
3036 6379 9.391006 ACATCCGTATGTAGTTTGTATTGAAAT 57.609 29.630 0.00 0.00 44.66 2.17
3037 6380 9.864034 CATCCGTATGTAGTTTGTATTGAAATC 57.136 33.333 0.00 0.00 0.00 2.17
3038 6381 8.428186 TCCGTATGTAGTTTGTATTGAAATCC 57.572 34.615 0.00 0.00 0.00 3.01
3039 6382 7.496591 TCCGTATGTAGTTTGTATTGAAATCCC 59.503 37.037 0.00 0.00 0.00 3.85
3040 6383 7.497909 CCGTATGTAGTTTGTATTGAAATCCCT 59.502 37.037 0.00 0.00 0.00 4.20
3041 6384 9.537192 CGTATGTAGTTTGTATTGAAATCCCTA 57.463 33.333 0.00 0.00 0.00 3.53
3048 6391 9.232473 AGTTTGTATTGAAATCCCTAGAAAGAC 57.768 33.333 0.00 0.00 0.00 3.01
3049 6392 9.232473 GTTTGTATTGAAATCCCTAGAAAGACT 57.768 33.333 0.00 0.00 0.00 3.24
3050 6393 9.807921 TTTGTATTGAAATCCCTAGAAAGACTT 57.192 29.630 0.00 0.00 0.00 3.01
3067 6410 8.947115 AGAAAGACTTATATTTTGAAACGGAGG 58.053 33.333 0.00 0.00 0.00 4.30
3068 6411 7.625828 AAGACTTATATTTTGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
3069 6412 6.954232 AGACTTATATTTTGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
3070 6413 7.048512 AGACTTATATTTTGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
3091 6434 7.070074 AGGGAGTATTCTGTAATTACTCACTGG 59.930 40.741 16.33 1.35 46.24 4.00
3127 6470 1.593196 GTTGTGCAGCTGAAGGTGTA 58.407 50.000 20.43 3.86 44.70 2.90
3139 6482 4.499183 CTGAAGGTGTAACATCTCCAGAC 58.501 47.826 0.00 0.00 39.98 3.51
3152 6495 2.094026 TCTCCAGACGACACCATGAATG 60.094 50.000 0.00 0.00 0.00 2.67
3172 6515 4.035102 GGCGGCCCTCCAGAAACT 62.035 66.667 8.12 0.00 0.00 2.66
3182 6525 1.550976 CTCCAGAAACTACCGAGCCTT 59.449 52.381 0.00 0.00 0.00 4.35
3184 6527 1.002087 CCAGAAACTACCGAGCCTTGT 59.998 52.381 0.00 0.00 0.00 3.16
3186 6529 3.139077 CAGAAACTACCGAGCCTTGTTT 58.861 45.455 0.00 0.00 34.15 2.83
3244 6587 1.132640 GGCACAAATCGACGCACTC 59.867 57.895 0.00 0.00 0.00 3.51
3357 6700 6.274157 TCTACAAATTCAGTGAGACTCCTC 57.726 41.667 0.00 0.00 39.86 3.71
3369 6712 5.893824 AGTGAGACTCCTCCAAAATTTGTTT 59.106 36.000 4.92 0.00 38.66 2.83
3793 7259 6.257849 CACATTTTATACCTGCACATACGACT 59.742 38.462 0.00 0.00 0.00 4.18
3955 7435 1.269206 CGGATCATTTTGGAATGCCCG 60.269 52.381 13.79 13.79 44.44 6.13
3956 7436 1.069049 GGATCATTTTGGAATGCCCGG 59.931 52.381 0.00 0.00 41.94 5.73
4446 7929 2.190841 TGAGACGTGGTGTGCGAGA 61.191 57.895 0.00 0.00 0.00 4.04
4465 7948 4.024218 CGAGATACTACTACCACCCGAAAG 60.024 50.000 0.00 0.00 0.00 2.62
4519 8008 0.597637 CGTCCGAGACAACAAGCTGT 60.598 55.000 0.00 0.00 32.09 4.40
4706 8232 3.119209 GGGAGTAGCTTGTGTACCAGTAC 60.119 52.174 0.00 0.86 36.63 2.73
4707 8233 3.508793 GGAGTAGCTTGTGTACCAGTACA 59.491 47.826 6.55 6.55 43.14 2.90
4805 8391 3.003480 GAGGAGTATTTCAGCGCTTGTT 58.997 45.455 7.50 0.00 0.00 2.83
4944 8570 4.305769 GCTTGTCTCAGCTAATCGATGAT 58.694 43.478 0.00 0.00 37.42 2.45
4977 8603 5.412526 TGATTTTAACTCGCGTGTTCTTT 57.587 34.783 27.63 12.80 0.00 2.52
4984 8614 0.653636 TCGCGTGTTCTTTTGTGGAC 59.346 50.000 5.77 0.00 0.00 4.02
5014 8644 4.339814 AGTGGTGATCGAGTAGGAGAAATC 59.660 45.833 0.00 0.00 0.00 2.17
5045 8675 0.390340 GCAGTGATCTGGTTCTCGCA 60.390 55.000 0.00 0.00 41.57 5.10
5093 8726 8.722480 TTTTGTTAGACCTGTGATGATATGAG 57.278 34.615 0.00 0.00 0.00 2.90
5094 8727 7.423844 TTGTTAGACCTGTGATGATATGAGT 57.576 36.000 0.00 0.00 0.00 3.41
5100 8734 3.055591 CTGTGATGATATGAGTCGTGCC 58.944 50.000 0.00 0.00 0.00 5.01
5124 8758 2.490509 TGCAGATGTCTTCAATGGCTTG 59.509 45.455 0.00 0.00 0.00 4.01
5171 8805 9.813446 AATCTTTTGATTCCTTTTCTATGCATC 57.187 29.630 0.19 0.00 45.26 3.91
5177 8811 6.319658 TGATTCCTTTTCTATGCATCAGTTCC 59.680 38.462 0.19 0.00 0.00 3.62
5208 8843 3.358111 TGCATATTTTGTTCCCTCCGA 57.642 42.857 0.00 0.00 0.00 4.55
5267 8914 0.109319 CCGGGTTTCGCAATTTCAGG 60.109 55.000 0.00 0.00 37.59 3.86
5338 8985 6.515272 AGTGCTAACATATTCTGTTTTGGG 57.485 37.500 0.00 0.00 45.98 4.12
5339 8986 5.418840 AGTGCTAACATATTCTGTTTTGGGG 59.581 40.000 0.00 0.00 45.98 4.96
5354 9001 0.105658 TGGGGACTAAGATCGAGGGG 60.106 60.000 0.00 0.00 0.00 4.79
5355 9002 1.473497 GGGGACTAAGATCGAGGGGC 61.473 65.000 0.00 0.00 0.00 5.80
5377 9394 4.085733 CAATGTAGGGGTTGTTTGGATGA 58.914 43.478 0.00 0.00 0.00 2.92
5403 9423 0.461339 TTCTAGCCCGGTCAAATCGC 60.461 55.000 0.00 0.00 0.00 4.58
5488 9699 0.390866 GCAAGTGAGCTGAGCTGCTA 60.391 55.000 13.71 0.00 44.17 3.49
5490 9701 0.536260 AAGTGAGCTGAGCTGCTAGG 59.464 55.000 13.71 0.00 44.17 3.02
5521 9732 2.416747 CTGAGCACACCGAAGAATTGA 58.583 47.619 0.00 0.00 0.00 2.57
5528 9739 4.201724 GCACACCGAAGAATTGATGTCTAC 60.202 45.833 0.00 0.00 0.00 2.59
5531 9742 3.517901 ACCGAAGAATTGATGTCTACCCA 59.482 43.478 0.00 0.00 0.00 4.51
5532 9743 4.019681 ACCGAAGAATTGATGTCTACCCAA 60.020 41.667 0.00 0.00 0.00 4.12
5594 9805 3.855689 GCTAGTTGCATTTGGACACAT 57.144 42.857 0.00 0.00 42.31 3.21
5596 9807 5.505173 GCTAGTTGCATTTGGACACATAT 57.495 39.130 0.00 0.00 42.31 1.78
5601 9812 9.494271 CTAGTTGCATTTGGACACATATATACT 57.506 33.333 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.530857 GGATGGCGACACCCTCCG 62.531 72.222 0.00 0.00 42.87 4.63
32 33 4.222847 GGACGGGAGGATGGCGAC 62.223 72.222 0.00 0.00 0.00 5.19
45 46 4.796231 CCAGAGTTCCGCCGGACG 62.796 72.222 4.70 8.73 43.15 4.79
46 47 3.692406 ACCAGAGTTCCGCCGGAC 61.692 66.667 4.70 0.79 0.00 4.79
47 48 3.691342 CACCAGAGTTCCGCCGGA 61.691 66.667 5.05 0.00 0.00 5.14
48 49 4.003788 ACACCAGAGTTCCGCCGG 62.004 66.667 0.00 0.00 0.00 6.13
49 50 2.738521 CACACCAGAGTTCCGCCG 60.739 66.667 0.00 0.00 0.00 6.46
50 51 3.050275 GCACACCAGAGTTCCGCC 61.050 66.667 0.00 0.00 0.00 6.13
51 52 3.050275 GGCACACCAGAGTTCCGC 61.050 66.667 0.00 0.00 35.26 5.54
52 53 2.358737 GGGCACACCAGAGTTCCG 60.359 66.667 0.00 0.00 39.85 4.30
53 54 2.034221 GGGGCACACCAGAGTTCC 59.966 66.667 0.00 0.00 42.91 3.62
54 55 2.358737 CGGGGCACACCAGAGTTC 60.359 66.667 0.00 0.00 42.91 3.01
55 56 4.643387 GCGGGGCACACCAGAGTT 62.643 66.667 0.00 0.00 42.91 3.01
67 68 4.363990 CAGATCGGATCGGCGGGG 62.364 72.222 7.21 0.00 0.00 5.73
71 72 3.032609 CACGCAGATCGGATCGGC 61.033 66.667 26.55 26.55 45.21 5.54
72 73 1.371022 CTCACGCAGATCGGATCGG 60.371 63.158 12.94 12.94 43.86 4.18
73 74 2.013483 GCTCACGCAGATCGGATCG 61.013 63.158 12.08 8.53 43.86 3.69
74 75 1.663074 GGCTCACGCAGATCGGATC 60.663 63.158 10.02 10.02 43.86 3.36
75 76 2.419198 GGCTCACGCAGATCGGAT 59.581 61.111 0.00 0.00 43.86 4.18
76 77 4.193334 CGGCTCACGCAGATCGGA 62.193 66.667 0.00 0.00 43.86 4.55
89 90 4.947147 TTTGGCGGACTTGCGGCT 62.947 61.111 17.14 0.00 42.03 5.52
90 91 4.700365 GTTTGGCGGACTTGCGGC 62.700 66.667 9.82 9.82 41.67 6.53
91 92 4.038080 GGTTTGGCGGACTTGCGG 62.038 66.667 0.00 0.00 35.06 5.69
92 93 4.038080 GGGTTTGGCGGACTTGCG 62.038 66.667 0.00 0.00 35.06 4.85
93 94 0.891904 TTAGGGTTTGGCGGACTTGC 60.892 55.000 0.00 0.00 0.00 4.01
94 95 1.743394 GATTAGGGTTTGGCGGACTTG 59.257 52.381 0.00 0.00 0.00 3.16
95 96 1.677820 CGATTAGGGTTTGGCGGACTT 60.678 52.381 0.00 0.00 0.00 3.01
96 97 0.107848 CGATTAGGGTTTGGCGGACT 60.108 55.000 0.00 0.00 0.00 3.85
97 98 1.712018 GCGATTAGGGTTTGGCGGAC 61.712 60.000 0.00 0.00 0.00 4.79
98 99 1.450669 GCGATTAGGGTTTGGCGGA 60.451 57.895 0.00 0.00 0.00 5.54
99 100 2.478033 GGCGATTAGGGTTTGGCGG 61.478 63.158 0.00 0.00 0.00 6.13
100 101 1.714899 CTGGCGATTAGGGTTTGGCG 61.715 60.000 0.00 0.00 0.00 5.69
101 102 0.393808 TCTGGCGATTAGGGTTTGGC 60.394 55.000 0.00 0.00 0.00 4.52
102 103 1.668419 CTCTGGCGATTAGGGTTTGG 58.332 55.000 0.00 0.00 0.00 3.28
103 104 1.017387 GCTCTGGCGATTAGGGTTTG 58.983 55.000 0.00 0.00 0.00 2.93
104 105 3.478540 GCTCTGGCGATTAGGGTTT 57.521 52.632 0.00 0.00 0.00 3.27
115 116 1.199327 GAAACCCTAAAACGCTCTGGC 59.801 52.381 0.00 0.00 0.00 4.85
116 117 1.810755 GGAAACCCTAAAACGCTCTGG 59.189 52.381 0.00 0.00 0.00 3.86
117 118 1.463444 CGGAAACCCTAAAACGCTCTG 59.537 52.381 0.00 0.00 0.00 3.35
118 119 1.609841 CCGGAAACCCTAAAACGCTCT 60.610 52.381 0.00 0.00 0.00 4.09
119 120 0.800631 CCGGAAACCCTAAAACGCTC 59.199 55.000 0.00 0.00 0.00 5.03
120 121 0.397564 TCCGGAAACCCTAAAACGCT 59.602 50.000 0.00 0.00 0.00 5.07
121 122 1.237533 TTCCGGAAACCCTAAAACGC 58.762 50.000 16.28 0.00 0.00 4.84
122 123 4.696877 AGTTATTCCGGAAACCCTAAAACG 59.303 41.667 23.08 0.00 0.00 3.60
123 124 5.942236 AGAGTTATTCCGGAAACCCTAAAAC 59.058 40.000 23.08 15.27 0.00 2.43
124 125 6.130692 AGAGTTATTCCGGAAACCCTAAAA 57.869 37.500 23.08 4.45 0.00 1.52
125 126 5.767277 AGAGTTATTCCGGAAACCCTAAA 57.233 39.130 23.08 6.20 0.00 1.85
126 127 5.338626 GGAAGAGTTATTCCGGAAACCCTAA 60.339 44.000 23.08 12.35 39.47 2.69
127 128 4.162888 GGAAGAGTTATTCCGGAAACCCTA 59.837 45.833 23.08 6.01 39.47 3.53
128 129 3.054582 GGAAGAGTTATTCCGGAAACCCT 60.055 47.826 23.08 16.17 39.47 4.34
129 130 3.276857 GGAAGAGTTATTCCGGAAACCC 58.723 50.000 23.08 11.43 39.47 4.11
138 139 3.188460 TGCGTTGCTTGGAAGAGTTATTC 59.812 43.478 0.00 0.00 0.00 1.75
139 140 3.146066 TGCGTTGCTTGGAAGAGTTATT 58.854 40.909 0.00 0.00 0.00 1.40
140 141 2.744202 CTGCGTTGCTTGGAAGAGTTAT 59.256 45.455 0.00 0.00 0.00 1.89
141 142 2.143122 CTGCGTTGCTTGGAAGAGTTA 58.857 47.619 0.00 0.00 0.00 2.24
142 143 0.947244 CTGCGTTGCTTGGAAGAGTT 59.053 50.000 0.00 0.00 0.00 3.01
143 144 0.886490 CCTGCGTTGCTTGGAAGAGT 60.886 55.000 0.00 0.00 0.00 3.24
144 145 0.603707 TCCTGCGTTGCTTGGAAGAG 60.604 55.000 2.58 0.00 31.73 2.85
145 146 0.179032 TTCCTGCGTTGCTTGGAAGA 60.179 50.000 10.93 0.00 37.13 2.87
146 147 0.667993 TTTCCTGCGTTGCTTGGAAG 59.332 50.000 13.34 0.00 40.46 3.46
147 148 1.107114 TTTTCCTGCGTTGCTTGGAA 58.893 45.000 10.93 10.93 38.91 3.53
148 149 1.066908 CTTTTTCCTGCGTTGCTTGGA 59.933 47.619 1.22 1.22 32.45 3.53
149 150 1.202405 ACTTTTTCCTGCGTTGCTTGG 60.202 47.619 0.00 0.00 0.00 3.61
150 151 2.208326 ACTTTTTCCTGCGTTGCTTG 57.792 45.000 0.00 0.00 0.00 4.01
151 152 2.539476 CAACTTTTTCCTGCGTTGCTT 58.461 42.857 0.00 0.00 31.62 3.91
152 153 1.202405 CCAACTTTTTCCTGCGTTGCT 60.202 47.619 0.00 0.00 36.36 3.91
153 154 1.202359 TCCAACTTTTTCCTGCGTTGC 60.202 47.619 0.00 0.00 36.36 4.17
154 155 2.861462 TCCAACTTTTTCCTGCGTTG 57.139 45.000 0.00 0.00 37.18 4.10
155 156 3.878160 TTTCCAACTTTTTCCTGCGTT 57.122 38.095 0.00 0.00 0.00 4.84
156 157 3.194755 AGTTTTCCAACTTTTTCCTGCGT 59.805 39.130 0.00 0.00 40.66 5.24
157 158 3.780902 AGTTTTCCAACTTTTTCCTGCG 58.219 40.909 0.00 0.00 40.66 5.18
158 159 4.119862 GGAGTTTTCCAACTTTTTCCTGC 58.880 43.478 0.00 0.00 43.79 4.85
159 160 4.142249 ACGGAGTTTTCCAACTTTTTCCTG 60.142 41.667 0.00 0.00 43.79 3.86
160 161 4.021229 ACGGAGTTTTCCAACTTTTTCCT 58.979 39.130 0.00 0.00 43.79 3.36
161 162 4.109766 CACGGAGTTTTCCAACTTTTTCC 58.890 43.478 0.00 0.00 43.79 3.13
162 163 4.989044 TCACGGAGTTTTCCAACTTTTTC 58.011 39.130 0.00 0.00 43.79 2.29
163 164 4.676986 GCTCACGGAGTTTTCCAACTTTTT 60.677 41.667 3.38 0.00 43.79 1.94
164 165 3.181490 GCTCACGGAGTTTTCCAACTTTT 60.181 43.478 3.38 0.00 43.79 2.27
165 166 2.357952 GCTCACGGAGTTTTCCAACTTT 59.642 45.455 3.38 0.00 43.79 2.66
166 167 1.947456 GCTCACGGAGTTTTCCAACTT 59.053 47.619 3.38 0.00 43.79 2.66
167 168 1.134220 TGCTCACGGAGTTTTCCAACT 60.134 47.619 3.38 0.00 46.64 3.16
168 169 1.002792 GTGCTCACGGAGTTTTCCAAC 60.003 52.381 3.38 0.00 41.61 3.77
169 170 1.305201 GTGCTCACGGAGTTTTCCAA 58.695 50.000 3.38 0.00 41.61 3.53
170 171 0.534203 GGTGCTCACGGAGTTTTCCA 60.534 55.000 3.38 0.00 41.61 3.53
171 172 0.250338 AGGTGCTCACGGAGTTTTCC 60.250 55.000 3.38 0.00 41.61 3.13
172 173 0.868406 CAGGTGCTCACGGAGTTTTC 59.132 55.000 3.38 0.00 41.61 2.29
173 174 0.535102 CCAGGTGCTCACGGAGTTTT 60.535 55.000 3.38 0.00 41.61 2.43
174 175 1.071471 CCAGGTGCTCACGGAGTTT 59.929 57.895 3.38 0.00 41.61 2.66
175 176 2.100879 GACCAGGTGCTCACGGAGTT 62.101 60.000 0.00 0.00 41.61 3.01
177 178 2.262915 GACCAGGTGCTCACGGAG 59.737 66.667 0.00 0.00 0.00 4.63
178 179 3.680786 CGACCAGGTGCTCACGGA 61.681 66.667 0.00 0.00 0.00 4.69
179 180 3.633094 CTCGACCAGGTGCTCACGG 62.633 68.421 0.00 0.00 0.00 4.94
180 181 2.126307 CTCGACCAGGTGCTCACG 60.126 66.667 0.00 0.00 0.00 4.35
181 182 2.433318 GCTCGACCAGGTGCTCAC 60.433 66.667 0.00 0.00 0.00 3.51
182 183 3.695606 GGCTCGACCAGGTGCTCA 61.696 66.667 0.00 0.00 38.86 4.26
183 184 3.695606 TGGCTCGACCAGGTGCTC 61.696 66.667 0.00 0.00 46.36 4.26
191 192 1.315257 TAGGTACGGTTGGCTCGACC 61.315 60.000 2.33 2.33 39.84 4.79
192 193 0.743097 ATAGGTACGGTTGGCTCGAC 59.257 55.000 2.94 0.00 0.00 4.20
193 194 1.949525 GTATAGGTACGGTTGGCTCGA 59.050 52.381 2.94 0.00 0.00 4.04
197 198 1.069668 CCCTGTATAGGTACGGTTGGC 59.930 57.143 4.65 0.00 42.96 4.52
200 201 1.417288 GGCCCTGTATAGGTACGGTT 58.583 55.000 4.65 0.00 42.96 4.44
425 432 2.093973 TCTTTCAGGGATGCTCTCGTTC 60.094 50.000 0.00 0.00 0.00 3.95
463 470 1.303074 CTGAAGCAGAGCAAGCCCA 60.303 57.895 0.00 0.00 32.44 5.36
464 471 2.698763 GCTGAAGCAGAGCAAGCCC 61.699 63.158 0.00 0.00 41.59 5.19
502 509 2.405357 CAGTGTCGAATCGAGTGAACAC 59.595 50.000 5.25 10.90 36.23 3.32
528 535 5.940617 TGACCTGGATTGAACCCTATATTG 58.059 41.667 0.00 0.00 0.00 1.90
529 536 6.160459 ACTTGACCTGGATTGAACCCTATATT 59.840 38.462 0.00 0.00 0.00 1.28
531 538 5.036916 ACTTGACCTGGATTGAACCCTATA 58.963 41.667 0.00 0.00 0.00 1.31
627 696 7.065563 GTGCCAAATGCCAATGTTTCAATATTA 59.934 33.333 0.00 0.00 40.16 0.98
628 697 5.944599 TGCCAAATGCCAATGTTTCAATATT 59.055 32.000 0.00 0.00 40.16 1.28
629 698 5.354792 GTGCCAAATGCCAATGTTTCAATAT 59.645 36.000 0.00 0.00 40.16 1.28
630 699 4.694509 GTGCCAAATGCCAATGTTTCAATA 59.305 37.500 0.00 0.00 40.16 1.90
631 700 3.502979 GTGCCAAATGCCAATGTTTCAAT 59.497 39.130 0.00 0.00 40.16 2.57
632 701 2.877168 GTGCCAAATGCCAATGTTTCAA 59.123 40.909 0.00 0.00 40.16 2.69
633 702 2.104451 AGTGCCAAATGCCAATGTTTCA 59.896 40.909 0.00 0.00 40.16 2.69
634 703 2.481185 CAGTGCCAAATGCCAATGTTTC 59.519 45.455 0.00 0.00 40.16 2.78
635 704 2.104451 TCAGTGCCAAATGCCAATGTTT 59.896 40.909 0.00 0.00 40.16 2.83
636 705 1.693062 TCAGTGCCAAATGCCAATGTT 59.307 42.857 0.00 0.00 40.16 2.71
637 706 1.340088 TCAGTGCCAAATGCCAATGT 58.660 45.000 0.00 0.00 40.16 2.71
638 707 2.343101 CTTCAGTGCCAAATGCCAATG 58.657 47.619 0.00 0.00 40.16 2.82
639 708 1.338389 GCTTCAGTGCCAAATGCCAAT 60.338 47.619 0.00 0.00 40.16 3.16
640 709 0.033781 GCTTCAGTGCCAAATGCCAA 59.966 50.000 0.00 0.00 40.16 4.52
641 710 0.828762 AGCTTCAGTGCCAAATGCCA 60.829 50.000 0.00 0.00 40.16 4.92
642 711 1.135286 GTAGCTTCAGTGCCAAATGCC 60.135 52.381 0.00 0.00 40.16 4.40
643 712 1.541147 TGTAGCTTCAGTGCCAAATGC 59.459 47.619 0.00 0.00 41.77 3.56
644 713 3.921119 TTGTAGCTTCAGTGCCAAATG 57.079 42.857 0.00 0.00 0.00 2.32
645 714 3.828451 ACATTGTAGCTTCAGTGCCAAAT 59.172 39.130 14.45 0.00 0.00 2.32
646 715 3.221771 ACATTGTAGCTTCAGTGCCAAA 58.778 40.909 14.45 0.00 0.00 3.28
687 1580 2.616842 ACGACAACAGGGATCAAAACAC 59.383 45.455 0.00 0.00 0.00 3.32
732 1629 0.892358 ATCTTGTGGTGCAGTGCAGG 60.892 55.000 20.42 5.03 40.08 4.85
818 1738 7.008440 TGACATCTGCTAGAATCATTTTTCG 57.992 36.000 0.00 0.00 0.00 3.46
843 1769 5.426509 TGGAATCTGAGCAGAAGGAATCTAA 59.573 40.000 4.06 0.00 41.36 2.10
949 1880 9.620259 CTGATACTAGTAGTGCCATCATATCTA 57.380 37.037 13.29 0.00 0.00 1.98
1125 2150 3.005554 TGATCTTAAGCTGCAGCAAGTC 58.994 45.455 38.24 27.51 45.16 3.01
1155 2180 2.108250 ACTTTAGGTTCCTGTGTGCCAT 59.892 45.455 1.12 0.00 0.00 4.40
1748 3849 2.608752 GCCAACCATGCACTTGAAGAAG 60.609 50.000 0.00 0.00 35.07 2.85
1922 4026 6.591834 GTGCTTCTAGCTTGATAACTTCAGAA 59.408 38.462 0.00 0.00 42.97 3.02
1965 4069 5.226194 AGATCCTTGATAGCCTGAACATC 57.774 43.478 0.00 0.00 0.00 3.06
2000 4104 3.147595 CCCCATCCAGACGCGAGA 61.148 66.667 15.93 3.97 0.00 4.04
2038 4142 2.093606 AGGAAGTAGCCCGCTTTTAGTC 60.094 50.000 0.00 0.00 0.00 2.59
2075 4179 5.532406 CAGAACTTTGAAGTGAGAATTCCCA 59.468 40.000 0.65 0.00 39.66 4.37
2183 4287 0.867753 GCAGCGATCGATCAAGACGT 60.868 55.000 24.40 0.00 0.00 4.34
2312 4416 3.446442 ACCATGAGCCTCAAGAAATGT 57.554 42.857 0.00 0.00 0.00 2.71
2385 4489 2.698855 AGACATTTCATCAGGACGGG 57.301 50.000 0.00 0.00 0.00 5.28
2726 6068 5.220854 CCATTTTCTTGTACATTAGGAGCGG 60.221 44.000 0.00 0.00 0.00 5.52
2748 6090 9.325248 TGGAATAACTGATCATGAGATATACCA 57.675 33.333 0.09 0.36 33.72 3.25
2774 6116 2.135933 CTCGACGCTTTGTTTCCTTCT 58.864 47.619 0.00 0.00 0.00 2.85
2863 6205 5.510430 ACCCTTCAATTCTTTACCTGATCC 58.490 41.667 0.00 0.00 0.00 3.36
2890 6232 6.322491 GGTAGATACCAAAGAAAATGTGCAC 58.678 40.000 10.75 10.75 45.73 4.57
2911 6254 9.364653 GACTTATATTTAGGAACAGAGAGGGTA 57.635 37.037 0.00 0.00 0.00 3.69
2912 6255 8.068733 AGACTTATATTTAGGAACAGAGAGGGT 58.931 37.037 0.00 0.00 0.00 4.34
2913 6256 8.485578 AGACTTATATTTAGGAACAGAGAGGG 57.514 38.462 0.00 0.00 0.00 4.30
2933 6276 8.755977 TCCGTAGTGGAATATCTAAAAAGACTT 58.244 33.333 0.00 0.00 46.38 3.01
2934 6277 8.302515 TCCGTAGTGGAATATCTAAAAAGACT 57.697 34.615 0.00 0.00 46.38 3.24
2950 6293 6.258230 TGTTCCGTATATAATCCGTAGTGG 57.742 41.667 0.00 0.00 40.09 4.00
2951 6294 8.578308 TTTTGTTCCGTATATAATCCGTAGTG 57.422 34.615 0.00 0.00 0.00 2.74
2952 6295 9.199982 CATTTTGTTCCGTATATAATCCGTAGT 57.800 33.333 0.00 0.00 0.00 2.73
2953 6296 9.414295 TCATTTTGTTCCGTATATAATCCGTAG 57.586 33.333 0.00 0.00 0.00 3.51
2954 6297 9.414295 CTCATTTTGTTCCGTATATAATCCGTA 57.586 33.333 0.00 0.00 0.00 4.02
2955 6298 7.929785 ACTCATTTTGTTCCGTATATAATCCGT 59.070 33.333 0.00 0.00 0.00 4.69
2956 6299 8.221100 CACTCATTTTGTTCCGTATATAATCCG 58.779 37.037 0.00 0.00 0.00 4.18
2957 6300 9.268268 TCACTCATTTTGTTCCGTATATAATCC 57.732 33.333 0.00 0.00 0.00 3.01
2962 6305 8.964476 AGATTCACTCATTTTGTTCCGTATAT 57.036 30.769 0.00 0.00 0.00 0.86
2963 6306 9.309516 GTAGATTCACTCATTTTGTTCCGTATA 57.690 33.333 0.00 0.00 0.00 1.47
2964 6307 7.822334 TGTAGATTCACTCATTTTGTTCCGTAT 59.178 33.333 0.00 0.00 0.00 3.06
2965 6308 7.117236 GTGTAGATTCACTCATTTTGTTCCGTA 59.883 37.037 0.00 0.00 35.68 4.02
2966 6309 5.995282 TGTAGATTCACTCATTTTGTTCCGT 59.005 36.000 0.00 0.00 0.00 4.69
2967 6310 6.147821 AGTGTAGATTCACTCATTTTGTTCCG 59.852 38.462 0.00 0.00 44.07 4.30
2968 6311 7.440523 AGTGTAGATTCACTCATTTTGTTCC 57.559 36.000 0.00 0.00 44.07 3.62
3009 6352 9.872721 TTTCAATACAAACTACATACGGATGTA 57.127 29.630 19.32 19.32 44.77 2.29
3011 6354 9.864034 GATTTCAATACAAACTACATACGGATG 57.136 33.333 5.94 5.94 39.16 3.51
3012 6355 9.052759 GGATTTCAATACAAACTACATACGGAT 57.947 33.333 0.00 0.00 0.00 4.18
3013 6356 7.496591 GGGATTTCAATACAAACTACATACGGA 59.503 37.037 0.00 0.00 0.00 4.69
3014 6357 7.497909 AGGGATTTCAATACAAACTACATACGG 59.502 37.037 0.00 0.00 0.00 4.02
3015 6358 8.433421 AGGGATTTCAATACAAACTACATACG 57.567 34.615 0.00 0.00 0.00 3.06
3022 6365 9.232473 GTCTTTCTAGGGATTTCAATACAAACT 57.768 33.333 0.00 0.00 0.00 2.66
3023 6366 9.232473 AGTCTTTCTAGGGATTTCAATACAAAC 57.768 33.333 0.00 0.00 0.00 2.93
3024 6367 9.807921 AAGTCTTTCTAGGGATTTCAATACAAA 57.192 29.630 0.00 0.00 0.00 2.83
3041 6384 8.947115 CCTCCGTTTCAAAATATAAGTCTTTCT 58.053 33.333 0.00 0.00 0.00 2.52
3042 6385 8.182227 CCCTCCGTTTCAAAATATAAGTCTTTC 58.818 37.037 0.00 0.00 0.00 2.62
3043 6386 7.886446 TCCCTCCGTTTCAAAATATAAGTCTTT 59.114 33.333 0.00 0.00 0.00 2.52
3044 6387 7.399634 TCCCTCCGTTTCAAAATATAAGTCTT 58.600 34.615 0.00 0.00 0.00 3.01
3045 6388 6.954232 TCCCTCCGTTTCAAAATATAAGTCT 58.046 36.000 0.00 0.00 0.00 3.24
3046 6389 6.822170 ACTCCCTCCGTTTCAAAATATAAGTC 59.178 38.462 0.00 0.00 0.00 3.01
3047 6390 6.718294 ACTCCCTCCGTTTCAAAATATAAGT 58.282 36.000 0.00 0.00 0.00 2.24
3048 6391 8.904099 ATACTCCCTCCGTTTCAAAATATAAG 57.096 34.615 0.00 0.00 0.00 1.73
3049 6392 9.333724 GAATACTCCCTCCGTTTCAAAATATAA 57.666 33.333 0.00 0.00 0.00 0.98
3050 6393 8.711170 AGAATACTCCCTCCGTTTCAAAATATA 58.289 33.333 0.00 0.00 0.00 0.86
3051 6394 7.499232 CAGAATACTCCCTCCGTTTCAAAATAT 59.501 37.037 0.00 0.00 0.00 1.28
3052 6395 6.821665 CAGAATACTCCCTCCGTTTCAAAATA 59.178 38.462 0.00 0.00 0.00 1.40
3053 6396 5.648092 CAGAATACTCCCTCCGTTTCAAAAT 59.352 40.000 0.00 0.00 0.00 1.82
3054 6397 5.001232 CAGAATACTCCCTCCGTTTCAAAA 58.999 41.667 0.00 0.00 0.00 2.44
3055 6398 4.041198 ACAGAATACTCCCTCCGTTTCAAA 59.959 41.667 0.00 0.00 0.00 2.69
3056 6399 3.581332 ACAGAATACTCCCTCCGTTTCAA 59.419 43.478 0.00 0.00 0.00 2.69
3057 6400 3.170717 ACAGAATACTCCCTCCGTTTCA 58.829 45.455 0.00 0.00 0.00 2.69
3058 6401 3.889520 ACAGAATACTCCCTCCGTTTC 57.110 47.619 0.00 0.00 0.00 2.78
3059 6402 5.952347 ATTACAGAATACTCCCTCCGTTT 57.048 39.130 0.00 0.00 0.00 3.60
3060 6403 5.952347 AATTACAGAATACTCCCTCCGTT 57.048 39.130 0.00 0.00 0.00 4.44
3061 6404 6.134754 AGTAATTACAGAATACTCCCTCCGT 58.865 40.000 17.65 0.00 0.00 4.69
3062 6405 6.264744 TGAGTAATTACAGAATACTCCCTCCG 59.735 42.308 17.65 0.00 37.07 4.63
3063 6406 7.288158 AGTGAGTAATTACAGAATACTCCCTCC 59.712 40.741 17.65 0.00 37.07 4.30
3064 6407 8.138712 CAGTGAGTAATTACAGAATACTCCCTC 58.861 40.741 17.65 2.80 37.07 4.30
3065 6408 7.070074 CCAGTGAGTAATTACAGAATACTCCCT 59.930 40.741 17.65 0.36 37.07 4.20
3066 6409 7.147707 ACCAGTGAGTAATTACAGAATACTCCC 60.148 40.741 17.65 0.00 37.07 4.30
3067 6410 7.707035 CACCAGTGAGTAATTACAGAATACTCC 59.293 40.741 17.65 1.65 37.07 3.85
3068 6411 8.251721 ACACCAGTGAGTAATTACAGAATACTC 58.748 37.037 17.65 6.83 38.04 2.59
3069 6412 8.135382 ACACCAGTGAGTAATTACAGAATACT 57.865 34.615 17.65 10.35 0.00 2.12
3070 6413 8.251721 AGACACCAGTGAGTAATTACAGAATAC 58.748 37.037 17.65 8.50 0.00 1.89
3091 6434 1.061131 CAACGCCGATCATCAAGACAC 59.939 52.381 0.00 0.00 0.00 3.67
3127 6470 1.338107 TGGTGTCGTCTGGAGATGTT 58.662 50.000 0.00 0.00 33.00 2.71
3139 6482 1.430632 GCCTGCATTCATGGTGTCG 59.569 57.895 0.00 0.00 0.00 4.35
3172 6515 1.418637 AGGACAAAACAAGGCTCGGTA 59.581 47.619 0.00 0.00 0.00 4.02
3182 6525 2.158385 ACCCCATTGCTAGGACAAAACA 60.158 45.455 0.00 0.00 32.27 2.83
3184 6527 2.524306 CACCCCATTGCTAGGACAAAA 58.476 47.619 0.00 0.00 32.27 2.44
3186 6529 0.323360 GCACCCCATTGCTAGGACAA 60.323 55.000 0.00 0.00 39.59 3.18
3244 6587 2.767505 ACAGGCCTAACTTTCTTCACG 58.232 47.619 3.98 0.00 0.00 4.35
3311 6654 3.757493 GGATACTCCATACGTACCAGAGG 59.243 52.174 17.73 7.92 36.28 3.69
3369 6712 7.798596 GAGAATCTGATCCTGAGCATTAAAA 57.201 36.000 0.00 0.00 0.00 1.52
3387 6730 9.965824 TCCAACAAAATTTTAGACAAGAGAATC 57.034 29.630 2.44 0.00 0.00 2.52
3482 6948 5.069648 CCTTGCAGATGACCTGTTAGAGATA 59.930 44.000 0.00 0.00 44.71 1.98
3793 7259 4.378356 CGATCCTGAGCGTTGATTTTTCAA 60.378 41.667 0.00 0.00 35.24 2.69
4446 7929 5.018809 TGTTCTTTCGGGTGGTAGTAGTAT 58.981 41.667 0.00 0.00 0.00 2.12
4465 7948 3.127425 ACTGTAGCTGAAACCCTGTTC 57.873 47.619 0.00 0.00 0.00 3.18
4706 8232 1.305201 ACGGCCACACAACTAGTTTG 58.695 50.000 5.07 10.29 41.49 2.93
4707 8233 2.486918 GTACGGCCACACAACTAGTTT 58.513 47.619 5.07 0.00 0.00 2.66
4805 8391 3.788227 AATTTCAGTGGAGTAGGTGCA 57.212 42.857 0.00 0.00 0.00 4.57
4944 8570 7.221067 ACGCGAGTTAAAATCAACAATTTTTCA 59.779 29.630 15.93 0.00 42.56 2.69
4977 8603 2.503765 TCACCACTTGAAGAGTCCACAA 59.496 45.455 0.00 0.00 36.10 3.33
4984 8614 3.584406 ACTCGATCACCACTTGAAGAG 57.416 47.619 0.00 0.00 43.43 2.85
5045 8675 0.107017 ACAACACAACCAGAGCAGCT 60.107 50.000 0.00 0.00 0.00 4.24
5100 8734 2.730090 GCCATTGAAGACATCTGCAACG 60.730 50.000 4.35 0.00 43.82 4.10
5107 8741 2.184385 CGCAAGCCATTGAAGACATC 57.816 50.000 0.00 0.00 38.83 3.06
5141 8775 9.294030 CATAGAAAAGGAATCAAAAGATTTCCG 57.706 33.333 0.00 0.00 0.00 4.30
5193 8828 3.323403 TGCAAAATCGGAGGGAACAAAAT 59.677 39.130 0.00 0.00 0.00 1.82
5198 8833 2.296190 ACTTTGCAAAATCGGAGGGAAC 59.704 45.455 13.84 0.00 0.00 3.62
5200 8835 2.286365 ACTTTGCAAAATCGGAGGGA 57.714 45.000 13.84 0.00 0.00 4.20
5201 8836 3.756434 TCTTACTTTGCAAAATCGGAGGG 59.244 43.478 13.84 1.28 0.00 4.30
5232 8867 4.968971 ACCCGGTAGGAAATAACCATAG 57.031 45.455 0.00 0.00 41.02 2.23
5267 8914 5.146010 TGGCCATTTTACCTGACAAATTC 57.854 39.130 0.00 0.00 0.00 2.17
5338 8985 1.120530 TTGCCCCTCGATCTTAGTCC 58.879 55.000 0.00 0.00 0.00 3.85
5339 8986 2.103263 ACATTGCCCCTCGATCTTAGTC 59.897 50.000 0.00 0.00 0.00 2.59
5354 9001 2.243810 TCCAAACAACCCCTACATTGC 58.756 47.619 0.00 0.00 0.00 3.56
5355 9002 4.085733 TCATCCAAACAACCCCTACATTG 58.914 43.478 0.00 0.00 0.00 2.82
5440 9651 2.779742 TTTTGGCGAGATGGGGGTGG 62.780 60.000 0.00 0.00 0.00 4.61
5441 9652 0.897863 TTTTTGGCGAGATGGGGGTG 60.898 55.000 0.00 0.00 0.00 4.61
5442 9653 0.611896 CTTTTTGGCGAGATGGGGGT 60.612 55.000 0.00 0.00 0.00 4.95
5443 9654 0.611896 ACTTTTTGGCGAGATGGGGG 60.612 55.000 0.00 0.00 0.00 5.40
5444 9655 1.067635 CAACTTTTTGGCGAGATGGGG 60.068 52.381 0.00 0.00 0.00 4.96
5536 9747 5.579753 ATGTCTCATAGGGAGCATGAATT 57.420 39.130 0.00 0.00 43.70 2.17
5537 9748 6.442885 TGATATGTCTCATAGGGAGCATGAAT 59.557 38.462 0.00 0.00 43.70 2.57
5550 9761 8.541234 AGCATGATTCTGTATGATATGTCTCAT 58.459 33.333 0.00 0.00 39.22 2.90
5551 9762 7.904205 AGCATGATTCTGTATGATATGTCTCA 58.096 34.615 0.00 0.00 0.00 3.27
5552 9763 9.518906 CTAGCATGATTCTGTATGATATGTCTC 57.481 37.037 0.00 0.00 0.00 3.36
5553 9764 9.033711 ACTAGCATGATTCTGTATGATATGTCT 57.966 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.