Multiple sequence alignment - TraesCS5B01G073300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G073300 chr5B 100.000 5198 0 0 1 5198 87232720 87237917 0.000000e+00 9600.0
1 TraesCS5B01G073300 chr5B 90.404 792 50 15 3 791 672545294 672544526 0.000000e+00 1018.0
2 TraesCS5B01G073300 chr5B 93.762 529 27 2 4676 5198 263956333 263955805 0.000000e+00 789.0
3 TraesCS5B01G073300 chr5B 93.750 192 1 2 1684 1864 264932349 264932540 1.430000e-70 278.0
4 TraesCS5B01G073300 chr5B 90.233 215 6 5 1673 1877 114213823 114214032 3.090000e-67 267.0
5 TraesCS5B01G073300 chr5B 92.121 165 3 1 1687 1841 84924786 84924950 1.880000e-54 224.0
6 TraesCS5B01G073300 chr5B 96.154 52 2 0 822 873 672544526 672544475 9.270000e-13 86.1
7 TraesCS5B01G073300 chr5A 95.203 2439 91 11 2240 4676 74483767 74486181 0.000000e+00 3832.0
8 TraesCS5B01G073300 chr5A 93.798 1709 70 19 1 1692 74481862 74483551 0.000000e+00 2536.0
9 TraesCS5B01G073300 chr5A 95.853 217 3 2 1864 2074 74483532 74483748 3.850000e-91 346.0
10 TraesCS5B01G073300 chr5D 91.674 2342 137 34 2240 4532 77583436 77585768 0.000000e+00 3192.0
11 TraesCS5B01G073300 chr5D 94.836 1704 62 15 1 1689 77581523 77583215 0.000000e+00 2636.0
12 TraesCS5B01G073300 chr5D 94.836 213 8 1 1864 2073 77583199 77583411 3.880000e-86 329.0
13 TraesCS5B01G073300 chr5D 93.064 173 12 0 2068 2240 498721903 498722075 2.400000e-63 254.0
14 TraesCS5B01G073300 chr6B 89.250 800 49 18 3 780 599817317 599818101 0.000000e+00 966.0
15 TraesCS5B01G073300 chr6B 92.614 176 11 2 2070 2245 485922668 485922495 8.640000e-63 252.0
16 TraesCS5B01G073300 chr2B 88.035 794 48 13 3 791 183538952 183538201 0.000000e+00 896.0
17 TraesCS5B01G073300 chr2B 93.785 531 22 6 4675 5198 733870267 733870793 0.000000e+00 787.0
18 TraesCS5B01G073300 chr2B 90.769 195 8 1 1680 1864 708794584 708794778 8.640000e-63 252.0
19 TraesCS5B01G073300 chr2B 96.154 52 2 0 822 873 183538201 183538150 9.270000e-13 86.1
20 TraesCS5B01G073300 chr3B 92.045 528 33 6 4679 5198 104969433 104968907 0.000000e+00 734.0
21 TraesCS5B01G073300 chr3B 92.655 177 10 3 2070 2245 745647041 745646867 8.640000e-63 252.0
22 TraesCS5B01G073300 chr1D 90.724 539 33 9 4676 5198 476840225 476840762 0.000000e+00 702.0
23 TraesCS5B01G073300 chr3D 90.892 527 40 4 4676 5196 50541225 50541749 0.000000e+00 701.0
24 TraesCS5B01G073300 chr3D 94.286 175 7 3 1690 1864 69500428 69500599 1.110000e-66 265.0
25 TraesCS5B01G073300 chr6D 90.359 529 43 6 4674 5195 472504314 472503787 0.000000e+00 688.0
26 TraesCS5B01G073300 chr6D 95.706 163 7 0 2072 2234 81746768 81746930 3.990000e-66 263.0
27 TraesCS5B01G073300 chr4B 89.758 537 38 6 4676 5197 128013105 128013639 0.000000e+00 671.0
28 TraesCS5B01G073300 chr4B 89.225 529 42 11 4676 5197 171216978 171216458 0.000000e+00 647.0
29 TraesCS5B01G073300 chr4B 96.571 175 2 1 1693 1863 4942331 4942505 2.370000e-73 287.0
30 TraesCS5B01G073300 chr4B 94.706 170 9 0 2065 2234 461850081 461850250 1.110000e-66 265.0
31 TraesCS5B01G073300 chr4B 93.750 176 8 3 1689 1864 206802762 206802590 1.440000e-65 261.0
32 TraesCS5B01G073300 chr4B 94.706 170 6 3 1695 1864 386210238 386210404 1.440000e-65 261.0
33 TraesCS5B01G073300 chr4B 94.152 171 9 1 2064 2234 85935844 85935675 5.160000e-65 259.0
34 TraesCS5B01G073300 chr4B 93.103 174 11 1 2072 2244 448896051 448896224 2.400000e-63 254.0
35 TraesCS5B01G073300 chr2D 89.326 534 43 8 4676 5198 220660067 220659537 0.000000e+00 658.0
36 TraesCS5B01G073300 chr2D 93.567 171 11 0 2064 2234 240791193 240791023 6.680000e-64 255.0
37 TraesCS5B01G073300 chr7A 95.322 171 6 2 1695 1865 696172082 696171914 2.390000e-68 270.0
38 TraesCS5B01G073300 chr7A 88.596 228 12 5 1679 1894 448258246 448258021 1.110000e-66 265.0
39 TraesCS5B01G073300 chr7A 88.832 197 16 6 1695 1888 68090232 68090425 2.420000e-58 237.0
40 TraesCS5B01G073300 chr2A 90.094 212 7 5 1693 1891 116437023 116436813 3.990000e-66 263.0
41 TraesCS5B01G073300 chr3A 93.064 173 12 0 2062 2234 731100705 731100877 2.400000e-63 254.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G073300 chr5B 87232720 87237917 5197 False 9600.000000 9600 100.000000 1 5198 1 chr5B.!!$F2 5197
1 TraesCS5B01G073300 chr5B 263955805 263956333 528 True 789.000000 789 93.762000 4676 5198 1 chr5B.!!$R1 522
2 TraesCS5B01G073300 chr5B 672544475 672545294 819 True 552.050000 1018 93.279000 3 873 2 chr5B.!!$R2 870
3 TraesCS5B01G073300 chr5A 74481862 74486181 4319 False 2238.000000 3832 94.951333 1 4676 3 chr5A.!!$F1 4675
4 TraesCS5B01G073300 chr5D 77581523 77585768 4245 False 2052.333333 3192 93.782000 1 4532 3 chr5D.!!$F2 4531
5 TraesCS5B01G073300 chr6B 599817317 599818101 784 False 966.000000 966 89.250000 3 780 1 chr6B.!!$F1 777
6 TraesCS5B01G073300 chr2B 733870267 733870793 526 False 787.000000 787 93.785000 4675 5198 1 chr2B.!!$F2 523
7 TraesCS5B01G073300 chr2B 183538150 183538952 802 True 491.050000 896 92.094500 3 873 2 chr2B.!!$R1 870
8 TraesCS5B01G073300 chr3B 104968907 104969433 526 True 734.000000 734 92.045000 4679 5198 1 chr3B.!!$R1 519
9 TraesCS5B01G073300 chr1D 476840225 476840762 537 False 702.000000 702 90.724000 4676 5198 1 chr1D.!!$F1 522
10 TraesCS5B01G073300 chr3D 50541225 50541749 524 False 701.000000 701 90.892000 4676 5196 1 chr3D.!!$F1 520
11 TraesCS5B01G073300 chr6D 472503787 472504314 527 True 688.000000 688 90.359000 4674 5195 1 chr6D.!!$R1 521
12 TraesCS5B01G073300 chr4B 128013105 128013639 534 False 671.000000 671 89.758000 4676 5197 1 chr4B.!!$F2 521
13 TraesCS5B01G073300 chr4B 171216458 171216978 520 True 647.000000 647 89.225000 4676 5197 1 chr4B.!!$R2 521
14 TraesCS5B01G073300 chr2D 220659537 220660067 530 True 658.000000 658 89.326000 4676 5198 1 chr2D.!!$R1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 758 0.245813 TGTGCTAGCACTGCTCAGAG 59.754 55.0 39.44 0.51 46.30 3.35 F
1702 1748 0.105504 ATATTCAAAGGGGGCAGCCC 60.106 55.0 24.23 24.23 44.51 5.19 F
1831 1877 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.0 0.00 0.00 44.78 4.85 F
1835 1881 0.038892 CATGGTCACAAGGCAGCAAC 60.039 55.0 0.00 0.00 0.00 4.17 F
1836 1882 0.178981 ATGGTCACAAGGCAGCAACT 60.179 50.0 0.00 0.00 0.00 3.16 F
2238 2295 0.179081 GGAACGGAGGGAGTACATGC 60.179 60.0 0.00 0.00 0.00 4.06 F
2297 2354 0.376852 GAAGTTTGTGCGCAGTGTCA 59.623 50.0 12.22 1.08 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 1847 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.0 0.00 2.69 R
3667 3740 0.325933 CAGCAGACCCTCCAATGTGA 59.674 55.000 0.00 0.0 0.00 3.58 R
3672 3745 0.687354 GTCTTCAGCAGACCCTCCAA 59.313 55.000 0.00 0.0 45.84 3.53 R
3828 3901 2.095213 TCCGCTGACGAAATGTATTTGC 59.905 45.455 0.00 0.0 43.93 3.68 R
3829 3902 4.142902 ACTTCCGCTGACGAAATGTATTTG 60.143 41.667 0.00 0.0 43.93 2.32 R
3841 3914 2.678336 CAGGGAATAAACTTCCGCTGAC 59.322 50.000 13.04 0.0 38.25 3.51 R
4273 4346 3.515502 AGATTTTGTCGGATGAGTCAGGA 59.484 43.478 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 79 4.702131 AGACAGCAGAATTGTGATAAACCC 59.298 41.667 6.80 0.00 0.00 4.11
93 100 5.683172 ACCCCTTACTAGGCTCTATTAGT 57.317 43.478 0.00 0.00 40.50 2.24
171 180 2.270205 CCTACTGTGGCTGCCCTG 59.730 66.667 17.53 13.40 0.00 4.45
249 258 0.828022 ATGATGCAACCATTGGGCTG 59.172 50.000 7.78 5.22 37.90 4.85
429 459 3.797039 TCTGTTCACTCAGTTTGACAGG 58.203 45.455 10.55 0.00 36.85 4.00
462 492 5.269505 AGAATCTTCCCAAGTATGTCGAG 57.730 43.478 0.00 0.00 0.00 4.04
479 509 1.892819 GAGGCAGAGCAGTGGCAGTA 61.893 60.000 13.35 0.00 45.34 2.74
516 546 6.891624 TCATGTTCAGAAGAAAACGATTCAG 58.108 36.000 8.09 0.00 35.08 3.02
563 593 4.689062 TCAGTTCCCAGTCTATTCCTCTT 58.311 43.478 0.00 0.00 0.00 2.85
607 639 3.547746 TCTGTCCACAGTGGGTTTTAAC 58.452 45.455 20.14 9.66 44.12 2.01
675 709 2.438021 GGGTTCTCCATACAGCCATACA 59.562 50.000 0.00 0.00 35.00 2.29
676 710 3.495100 GGGTTCTCCATACAGCCATACAG 60.495 52.174 0.00 0.00 35.00 2.74
677 711 3.134804 GGTTCTCCATACAGCCATACAGT 59.865 47.826 0.00 0.00 0.00 3.55
678 712 4.344102 GGTTCTCCATACAGCCATACAGTA 59.656 45.833 0.00 0.00 0.00 2.74
679 713 5.290386 GTTCTCCATACAGCCATACAGTAC 58.710 45.833 0.00 0.00 0.00 2.73
707 741 2.766263 TCTGTGAGACTGTGACCTTTGT 59.234 45.455 0.00 0.00 0.00 2.83
724 758 0.245813 TGTGCTAGCACTGCTCAGAG 59.754 55.000 39.44 0.51 46.30 3.35
803 837 6.208644 TGCTTTAATCTCTGCTGTTGTTTTC 58.791 36.000 0.00 0.00 0.00 2.29
819 853 3.682858 TGTTTTCGCTATTGCTACTGACC 59.317 43.478 0.00 0.00 36.97 4.02
820 854 3.603158 TTTCGCTATTGCTACTGACCA 57.397 42.857 0.00 0.00 36.97 4.02
855 891 4.164988 ACACTCTAGATATTGCTGCCCTTT 59.835 41.667 0.00 0.00 0.00 3.11
899 935 7.408756 TGGAAGAAATGAAACTGGAATATGG 57.591 36.000 0.00 0.00 0.00 2.74
926 962 4.077822 AGATTCTGCAGCTTTTAGTGCTT 58.922 39.130 9.47 0.00 40.54 3.91
1029 1065 2.949177 TCAACAGTAGGGCACAATGT 57.051 45.000 0.00 0.00 0.00 2.71
1033 1069 1.089920 CAGTAGGGCACAATGTCAGC 58.910 55.000 0.00 0.00 0.00 4.26
1051 1087 1.202639 AGCACAGTCGGTTCATGTCAA 60.203 47.619 0.00 0.00 0.00 3.18
1067 1103 6.888105 TCATGTCAATTAGCCTGAATACTGA 58.112 36.000 0.00 0.00 0.00 3.41
1071 1107 6.094048 TGTCAATTAGCCTGAATACTGAAAGC 59.906 38.462 0.00 0.00 37.60 3.51
1197 1237 2.221169 GATGGACAAGTCTTGCACACA 58.779 47.619 12.66 6.97 0.00 3.72
1369 1410 8.710835 ATAGTTTGTTAGTTTGTTGTTTTGGG 57.289 30.769 0.00 0.00 0.00 4.12
1378 1419 5.246429 AGTTTGTTGTTTTGGGTAAGTGGAA 59.754 36.000 0.00 0.00 0.00 3.53
1513 1554 4.564769 GGCAAAAATGTTGAACGTCAGAAA 59.435 37.500 0.00 0.00 0.00 2.52
1514 1555 5.062809 GGCAAAAATGTTGAACGTCAGAAAA 59.937 36.000 0.00 0.00 0.00 2.29
1660 1706 2.622977 GGGTGGCATATCCTGAAAACCA 60.623 50.000 0.00 0.00 35.26 3.67
1661 1707 2.427095 GGTGGCATATCCTGAAAACCAC 59.573 50.000 0.00 0.00 44.21 4.16
1662 1708 3.356290 GTGGCATATCCTGAAAACCACT 58.644 45.455 0.00 0.00 42.20 4.00
1664 1710 2.952310 GGCATATCCTGAAAACCACTCC 59.048 50.000 0.00 0.00 0.00 3.85
1666 1712 4.273318 GCATATCCTGAAAACCACTCCTT 58.727 43.478 0.00 0.00 0.00 3.36
1675 1721 6.349363 CCTGAAAACCACTCCTTAAACTATGC 60.349 42.308 0.00 0.00 0.00 3.14
1676 1722 6.065374 TGAAAACCACTCCTTAAACTATGCA 58.935 36.000 0.00 0.00 0.00 3.96
1677 1723 6.719370 TGAAAACCACTCCTTAAACTATGCAT 59.281 34.615 3.79 3.79 0.00 3.96
1678 1724 7.885922 TGAAAACCACTCCTTAAACTATGCATA 59.114 33.333 6.20 6.20 0.00 3.14
1679 1725 8.644374 AAAACCACTCCTTAAACTATGCATAA 57.356 30.769 8.00 0.00 0.00 1.90
1680 1726 7.865706 AACCACTCCTTAAACTATGCATAAG 57.134 36.000 8.00 3.57 0.00 1.73
1681 1727 6.357367 ACCACTCCTTAAACTATGCATAAGG 58.643 40.000 16.15 16.15 44.58 2.69
1682 1728 5.239525 CCACTCCTTAAACTATGCATAAGGC 59.760 44.000 17.11 0.00 43.46 4.35
1695 1741 4.525912 GCATAAGGCATATTCAAAGGGG 57.474 45.455 0.00 0.00 43.97 4.79
1696 1742 3.259123 GCATAAGGCATATTCAAAGGGGG 59.741 47.826 0.00 0.00 43.97 5.40
1697 1743 1.793414 AAGGCATATTCAAAGGGGGC 58.207 50.000 0.00 0.00 0.00 5.80
1698 1744 0.636101 AGGCATATTCAAAGGGGGCA 59.364 50.000 0.00 0.00 0.00 5.36
1699 1745 1.043022 GGCATATTCAAAGGGGGCAG 58.957 55.000 0.00 0.00 0.00 4.85
1700 1746 0.390492 GCATATTCAAAGGGGGCAGC 59.610 55.000 0.00 0.00 0.00 5.25
1701 1747 1.043022 CATATTCAAAGGGGGCAGCC 58.957 55.000 1.26 1.26 0.00 4.85
1702 1748 0.105504 ATATTCAAAGGGGGCAGCCC 60.106 55.000 24.23 24.23 44.51 5.19
1713 1759 2.045045 GCAGCCCCAGTGCATGTA 60.045 61.111 0.00 0.00 40.86 2.29
1714 1760 2.117156 GCAGCCCCAGTGCATGTAG 61.117 63.158 0.00 0.00 40.86 2.74
1715 1761 2.117156 CAGCCCCAGTGCATGTAGC 61.117 63.158 0.00 0.00 45.96 3.58
1716 1762 2.273449 GCCCCAGTGCATGTAGCT 59.727 61.111 0.00 0.00 45.94 3.32
1717 1763 1.821332 GCCCCAGTGCATGTAGCTC 60.821 63.158 0.00 0.00 45.94 4.09
1718 1764 1.153086 CCCCAGTGCATGTAGCTCC 60.153 63.158 0.00 0.00 45.94 4.70
1719 1765 1.153086 CCCAGTGCATGTAGCTCCC 60.153 63.158 0.00 0.00 45.94 4.30
1720 1766 1.522355 CCAGTGCATGTAGCTCCCG 60.522 63.158 0.00 0.00 45.94 5.14
1721 1767 2.176273 CAGTGCATGTAGCTCCCGC 61.176 63.158 0.00 0.00 45.94 6.13
1723 1769 1.884926 GTGCATGTAGCTCCCGCTC 60.885 63.158 0.00 0.00 45.15 5.03
1724 1770 2.060383 TGCATGTAGCTCCCGCTCT 61.060 57.895 0.00 0.00 45.15 4.09
1725 1771 1.593750 GCATGTAGCTCCCGCTCTG 60.594 63.158 0.00 0.00 45.15 3.35
1726 1772 1.068753 CATGTAGCTCCCGCTCTGG 59.931 63.158 0.00 0.00 45.15 3.86
1735 1781 3.787001 CCGCTCTGGGGAAGGGTC 61.787 72.222 0.00 0.00 37.91 4.46
1736 1782 3.787001 CGCTCTGGGGAAGGGTCC 61.787 72.222 0.00 0.00 44.10 4.46
1737 1783 3.787001 GCTCTGGGGAAGGGTCCG 61.787 72.222 0.00 0.00 46.04 4.79
1738 1784 2.038975 CTCTGGGGAAGGGTCCGA 59.961 66.667 0.00 0.00 46.04 4.55
1739 1785 2.284405 TCTGGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1740 1786 3.400054 CTGGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1741 1787 4.257810 TGGGGAAGGGTCCGACCA 62.258 66.667 19.43 0.00 46.04 4.02
1742 1788 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
1743 1789 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1744 1790 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1745 1791 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1746 1792 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1747 1793 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1748 1794 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1749 1795 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1759 1805 3.934068 ACCACTTTGGGTCTATTGTACG 58.066 45.455 0.00 0.00 43.37 3.67
1760 1806 2.676342 CCACTTTGGGTCTATTGTACGC 59.324 50.000 0.00 0.00 32.67 4.42
1761 1807 3.331150 CACTTTGGGTCTATTGTACGCA 58.669 45.455 0.00 0.00 37.94 5.24
1762 1808 3.370978 CACTTTGGGTCTATTGTACGCAG 59.629 47.826 0.00 0.00 40.36 5.18
1763 1809 2.018542 TTGGGTCTATTGTACGCAGC 57.981 50.000 0.00 0.00 40.36 5.25
1764 1810 0.177141 TGGGTCTATTGTACGCAGCC 59.823 55.000 0.00 0.00 35.18 4.85
1765 1811 0.464452 GGGTCTATTGTACGCAGCCT 59.536 55.000 0.00 0.00 0.00 4.58
1766 1812 1.134491 GGGTCTATTGTACGCAGCCTT 60.134 52.381 0.00 0.00 0.00 4.35
1767 1813 2.629051 GGTCTATTGTACGCAGCCTTT 58.371 47.619 0.00 0.00 0.00 3.11
1768 1814 2.608090 GGTCTATTGTACGCAGCCTTTC 59.392 50.000 0.00 0.00 0.00 2.62
1769 1815 2.608090 GTCTATTGTACGCAGCCTTTCC 59.392 50.000 0.00 0.00 0.00 3.13
1770 1816 1.940613 CTATTGTACGCAGCCTTTCCC 59.059 52.381 0.00 0.00 0.00 3.97
1771 1817 0.328258 ATTGTACGCAGCCTTTCCCT 59.672 50.000 0.00 0.00 0.00 4.20
1772 1818 0.978151 TTGTACGCAGCCTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
1773 1819 0.248289 TGTACGCAGCCTTTCCCTAC 59.752 55.000 0.00 0.00 0.00 3.18
1774 1820 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1775 1821 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1776 1822 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1777 1823 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1778 1824 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
1779 1825 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
1780 1826 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
1781 1827 2.424956 CAGCCTTTCCCTACATTTCTGC 59.575 50.000 0.00 0.00 0.00 4.26
1782 1828 2.041620 AGCCTTTCCCTACATTTCTGCA 59.958 45.455 0.00 0.00 0.00 4.41
1783 1829 2.825532 GCCTTTCCCTACATTTCTGCAA 59.174 45.455 0.00 0.00 0.00 4.08
1784 1830 3.119352 GCCTTTCCCTACATTTCTGCAAG 60.119 47.826 0.00 0.00 0.00 4.01
1785 1831 4.335416 CCTTTCCCTACATTTCTGCAAGA 58.665 43.478 0.00 0.00 44.68 3.02
1795 1841 3.329300 TCTGCAAGAGGCTGTTTCC 57.671 52.632 0.00 0.00 38.67 3.13
1796 1842 0.473755 TCTGCAAGAGGCTGTTTCCA 59.526 50.000 0.00 0.00 38.67 3.53
1797 1843 0.879765 CTGCAAGAGGCTGTTTCCAG 59.120 55.000 0.00 0.00 45.15 3.86
1798 1844 0.538057 TGCAAGAGGCTGTTTCCAGG 60.538 55.000 0.00 0.00 45.15 4.45
1799 1845 0.250901 GCAAGAGGCTGTTTCCAGGA 60.251 55.000 0.00 0.00 39.22 3.86
1800 1846 1.528129 CAAGAGGCTGTTTCCAGGAC 58.472 55.000 0.00 0.00 39.22 3.85
1801 1847 1.072965 CAAGAGGCTGTTTCCAGGACT 59.927 52.381 0.00 0.00 39.22 3.85
1802 1848 1.439543 AGAGGCTGTTTCCAGGACTT 58.560 50.000 0.00 0.00 39.22 3.01
1803 1849 1.072965 AGAGGCTGTTTCCAGGACTTG 59.927 52.381 0.00 0.00 39.22 3.16
1804 1850 1.072331 GAGGCTGTTTCCAGGACTTGA 59.928 52.381 0.00 0.00 39.22 3.02
1805 1851 1.494721 AGGCTGTTTCCAGGACTTGAA 59.505 47.619 0.00 0.00 39.22 2.69
1806 1852 1.609072 GGCTGTTTCCAGGACTTGAAC 59.391 52.381 0.00 0.00 39.22 3.18
1807 1853 1.609072 GCTGTTTCCAGGACTTGAACC 59.391 52.381 0.00 0.00 39.22 3.62
1808 1854 2.230660 CTGTTTCCAGGACTTGAACCC 58.769 52.381 0.00 0.00 34.90 4.11
1809 1855 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
1810 1856 0.841289 TTTCCAGGACTTGAACCCGT 59.159 50.000 0.00 0.00 0.00 5.28
1811 1857 0.107831 TTCCAGGACTTGAACCCGTG 59.892 55.000 0.00 0.00 0.00 4.94
1812 1858 0.761323 TCCAGGACTTGAACCCGTGA 60.761 55.000 0.00 0.00 0.00 4.35
1813 1859 0.602905 CCAGGACTTGAACCCGTGAC 60.603 60.000 0.00 0.00 0.00 3.67
1814 1860 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
1815 1861 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
1816 1862 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
1817 1863 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
1818 1864 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
1819 1865 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
1830 1876 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
1831 1877 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
1832 1878 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
1833 1879 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
1834 1880 0.178995 TCATGGTCACAAGGCAGCAA 60.179 50.000 0.00 0.00 0.00 3.91
1835 1881 0.038892 CATGGTCACAAGGCAGCAAC 60.039 55.000 0.00 0.00 0.00 4.17
1836 1882 0.178981 ATGGTCACAAGGCAGCAACT 60.179 50.000 0.00 0.00 0.00 3.16
1837 1883 0.395586 TGGTCACAAGGCAGCAACTT 60.396 50.000 0.00 0.00 0.00 2.66
1838 1884 0.746659 GGTCACAAGGCAGCAACTTT 59.253 50.000 0.00 0.00 0.00 2.66
1839 1885 1.953686 GGTCACAAGGCAGCAACTTTA 59.046 47.619 0.00 0.00 0.00 1.85
1840 1886 2.287608 GGTCACAAGGCAGCAACTTTAC 60.288 50.000 0.00 0.00 0.00 2.01
1841 1887 1.953686 TCACAAGGCAGCAACTTTACC 59.046 47.619 0.00 0.00 0.00 2.85
1842 1888 1.680735 CACAAGGCAGCAACTTTACCA 59.319 47.619 0.00 0.00 0.00 3.25
1843 1889 1.681264 ACAAGGCAGCAACTTTACCAC 59.319 47.619 0.00 0.00 0.00 4.16
1844 1890 1.956477 CAAGGCAGCAACTTTACCACT 59.044 47.619 0.00 0.00 0.00 4.00
1845 1891 1.609208 AGGCAGCAACTTTACCACTG 58.391 50.000 0.00 0.00 0.00 3.66
1846 1892 3.479255 GCAGCAACTTTACCACTGC 57.521 52.632 0.00 0.00 45.95 4.40
1847 1893 0.385974 GCAGCAACTTTACCACTGCG 60.386 55.000 0.00 0.00 43.65 5.18
1848 1894 0.385974 CAGCAACTTTACCACTGCGC 60.386 55.000 0.00 0.00 39.80 6.09
1849 1895 1.081442 GCAACTTTACCACTGCGCC 60.081 57.895 4.18 0.00 0.00 6.53
1850 1896 1.791103 GCAACTTTACCACTGCGCCA 61.791 55.000 4.18 0.00 0.00 5.69
1851 1897 0.665835 CAACTTTACCACTGCGCCAA 59.334 50.000 4.18 0.00 0.00 4.52
1852 1898 0.951558 AACTTTACCACTGCGCCAAG 59.048 50.000 4.18 0.00 0.00 3.61
1853 1899 0.889186 ACTTTACCACTGCGCCAAGG 60.889 55.000 4.18 6.21 0.00 3.61
1854 1900 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
1855 1901 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
1856 1902 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
2074 2131 9.448587 AATTACCTCTTTATCCTACCATGTACT 57.551 33.333 0.00 0.00 0.00 2.73
2075 2132 6.980416 ACCTCTTTATCCTACCATGTACTC 57.020 41.667 0.00 0.00 0.00 2.59
2076 2133 5.839606 ACCTCTTTATCCTACCATGTACTCC 59.160 44.000 0.00 0.00 0.00 3.85
2077 2134 5.246429 CCTCTTTATCCTACCATGTACTCCC 59.754 48.000 0.00 0.00 0.00 4.30
2078 2135 6.039415 TCTTTATCCTACCATGTACTCCCT 57.961 41.667 0.00 0.00 0.00 4.20
2079 2136 6.075984 TCTTTATCCTACCATGTACTCCCTC 58.924 44.000 0.00 0.00 0.00 4.30
2080 2137 2.769602 TCCTACCATGTACTCCCTCC 57.230 55.000 0.00 0.00 0.00 4.30
2081 2138 1.133575 TCCTACCATGTACTCCCTCCG 60.134 57.143 0.00 0.00 0.00 4.63
2082 2139 1.411216 CCTACCATGTACTCCCTCCGT 60.411 57.143 0.00 0.00 0.00 4.69
2083 2140 2.385803 CTACCATGTACTCCCTCCGTT 58.614 52.381 0.00 0.00 0.00 4.44
2085 2142 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
2087 2144 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
2088 2145 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2091 2148 3.449737 TGTACTCCCTCCGTTCCTAAATG 59.550 47.826 0.00 0.00 0.00 2.32
2092 2149 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
2093 2150 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
2094 2151 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
2095 2152 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
2096 2153 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
2097 2154 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
2098 2155 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
2099 2156 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
2100 2157 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2101 2158 7.325694 CCTCCGTTCCTAAATGTAAGTCTTTA 58.674 38.462 0.00 0.00 0.00 1.85
2102 2159 7.985752 CCTCCGTTCCTAAATGTAAGTCTTTAT 59.014 37.037 0.00 0.00 0.00 1.40
2119 2176 9.829507 AAGTCTTTATAGAGATTTCACCAGATG 57.170 33.333 0.00 0.00 0.00 2.90
2120 2177 8.428063 AGTCTTTATAGAGATTTCACCAGATGG 58.572 37.037 0.00 0.00 42.17 3.51
2121 2178 8.424918 GTCTTTATAGAGATTTCACCAGATGGA 58.575 37.037 5.72 0.00 38.94 3.41
2122 2179 8.424918 TCTTTATAGAGATTTCACCAGATGGAC 58.575 37.037 5.72 0.00 38.94 4.02
2123 2180 7.921041 TTATAGAGATTTCACCAGATGGACT 57.079 36.000 5.72 0.00 38.94 3.85
2124 2181 9.434275 TTTATAGAGATTTCACCAGATGGACTA 57.566 33.333 5.72 0.00 38.94 2.59
2125 2182 5.606348 AGAGATTTCACCAGATGGACTAC 57.394 43.478 5.72 0.00 38.94 2.73
2126 2183 5.026121 AGAGATTTCACCAGATGGACTACA 58.974 41.667 5.72 0.00 38.94 2.74
2127 2184 5.664908 AGAGATTTCACCAGATGGACTACAT 59.335 40.000 5.72 0.00 44.18 2.29
2128 2185 6.841229 AGAGATTTCACCAGATGGACTACATA 59.159 38.462 5.72 0.00 40.72 2.29
2129 2186 7.345653 AGAGATTTCACCAGATGGACTACATAA 59.654 37.037 5.72 0.00 40.72 1.90
2130 2187 7.504403 AGATTTCACCAGATGGACTACATAAG 58.496 38.462 5.72 0.00 40.72 1.73
2131 2188 5.614324 TTCACCAGATGGACTACATAAGG 57.386 43.478 5.72 0.00 40.72 2.69
2132 2189 4.878968 TCACCAGATGGACTACATAAGGA 58.121 43.478 5.72 0.00 40.72 3.36
2133 2190 4.895889 TCACCAGATGGACTACATAAGGAG 59.104 45.833 5.72 0.00 40.72 3.69
2134 2191 3.643792 ACCAGATGGACTACATAAGGAGC 59.356 47.826 5.72 0.00 40.72 4.70
2135 2192 3.643320 CCAGATGGACTACATAAGGAGCA 59.357 47.826 0.00 0.00 40.72 4.26
2136 2193 4.101585 CCAGATGGACTACATAAGGAGCAA 59.898 45.833 0.00 0.00 40.72 3.91
2137 2194 5.396772 CCAGATGGACTACATAAGGAGCAAA 60.397 44.000 0.00 0.00 40.72 3.68
2138 2195 6.115446 CAGATGGACTACATAAGGAGCAAAA 58.885 40.000 0.00 0.00 40.72 2.44
2139 2196 6.769822 CAGATGGACTACATAAGGAGCAAAAT 59.230 38.462 0.00 0.00 40.72 1.82
2140 2197 6.769822 AGATGGACTACATAAGGAGCAAAATG 59.230 38.462 0.00 0.00 40.72 2.32
2141 2198 6.061022 TGGACTACATAAGGAGCAAAATGA 57.939 37.500 0.00 0.00 0.00 2.57
2142 2199 6.480763 TGGACTACATAAGGAGCAAAATGAA 58.519 36.000 0.00 0.00 0.00 2.57
2143 2200 7.118723 TGGACTACATAAGGAGCAAAATGAAT 58.881 34.615 0.00 0.00 0.00 2.57
2144 2201 7.067372 TGGACTACATAAGGAGCAAAATGAATG 59.933 37.037 0.00 0.00 0.00 2.67
2145 2202 7.283127 GGACTACATAAGGAGCAAAATGAATGA 59.717 37.037 0.00 0.00 0.00 2.57
2146 2203 8.579850 ACTACATAAGGAGCAAAATGAATGAA 57.420 30.769 0.00 0.00 0.00 2.57
2147 2204 9.193806 ACTACATAAGGAGCAAAATGAATGAAT 57.806 29.630 0.00 0.00 0.00 2.57
2148 2205 9.674824 CTACATAAGGAGCAAAATGAATGAATC 57.325 33.333 0.00 0.00 0.00 2.52
2149 2206 7.495055 ACATAAGGAGCAAAATGAATGAATCC 58.505 34.615 0.00 0.00 0.00 3.01
2150 2207 7.124599 ACATAAGGAGCAAAATGAATGAATCCA 59.875 33.333 0.00 0.00 31.28 3.41
2151 2208 6.363167 AAGGAGCAAAATGAATGAATCCAA 57.637 33.333 0.00 0.00 31.28 3.53
2152 2209 6.363167 AGGAGCAAAATGAATGAATCCAAA 57.637 33.333 0.00 0.00 31.28 3.28
2153 2210 6.168389 AGGAGCAAAATGAATGAATCCAAAC 58.832 36.000 0.00 0.00 31.28 2.93
2154 2211 6.013984 AGGAGCAAAATGAATGAATCCAAACT 60.014 34.615 0.00 0.00 31.28 2.66
2155 2212 6.652062 GGAGCAAAATGAATGAATCCAAACTT 59.348 34.615 0.00 0.00 0.00 2.66
2156 2213 7.818930 GGAGCAAAATGAATGAATCCAAACTTA 59.181 33.333 0.00 0.00 0.00 2.24
2157 2214 9.206870 GAGCAAAATGAATGAATCCAAACTTAA 57.793 29.630 0.00 0.00 0.00 1.85
2158 2215 9.558396 AGCAAAATGAATGAATCCAAACTTAAA 57.442 25.926 0.00 0.00 0.00 1.52
2163 2220 9.504708 AATGAATGAATCCAAACTTAAAATGCA 57.495 25.926 0.00 0.00 0.00 3.96
2164 2221 9.675464 ATGAATGAATCCAAACTTAAAATGCAT 57.325 25.926 0.00 0.00 0.00 3.96
2165 2222 9.153721 TGAATGAATCCAAACTTAAAATGCATC 57.846 29.630 0.00 0.00 0.00 3.91
2166 2223 9.374838 GAATGAATCCAAACTTAAAATGCATCT 57.625 29.630 0.00 0.00 0.00 2.90
2168 2225 9.807649 ATGAATCCAAACTTAAAATGCATCTAC 57.192 29.630 0.00 0.00 0.00 2.59
2169 2226 8.801299 TGAATCCAAACTTAAAATGCATCTACA 58.199 29.630 0.00 0.00 0.00 2.74
2170 2227 9.807649 GAATCCAAACTTAAAATGCATCTACAT 57.192 29.630 0.00 0.00 0.00 2.29
2173 2230 9.237187 TCCAAACTTAAAATGCATCTACATACA 57.763 29.630 0.00 0.00 0.00 2.29
2177 2234 8.087982 ACTTAAAATGCATCTACATACATCCG 57.912 34.615 0.00 0.00 0.00 4.18
2178 2235 7.715249 ACTTAAAATGCATCTACATACATCCGT 59.285 33.333 0.00 0.00 0.00 4.69
2179 2236 9.203421 CTTAAAATGCATCTACATACATCCGTA 57.797 33.333 0.00 0.00 0.00 4.02
2180 2237 9.719355 TTAAAATGCATCTACATACATCCGTAT 57.281 29.630 0.00 0.00 38.96 3.06
2193 2250 5.165911 ACATCCGTATGTAGTTCGTAGTG 57.834 43.478 0.00 0.00 44.66 2.74
2194 2251 4.036027 ACATCCGTATGTAGTTCGTAGTGG 59.964 45.833 0.00 0.00 44.66 4.00
2195 2252 3.872696 TCCGTATGTAGTTCGTAGTGGA 58.127 45.455 0.00 0.00 0.00 4.02
2196 2253 4.260985 TCCGTATGTAGTTCGTAGTGGAA 58.739 43.478 0.00 0.00 0.00 3.53
2197 2254 4.883585 TCCGTATGTAGTTCGTAGTGGAAT 59.116 41.667 0.00 0.00 0.00 3.01
2198 2255 5.008019 TCCGTATGTAGTTCGTAGTGGAATC 59.992 44.000 0.00 0.00 0.00 2.52
2199 2256 5.008415 CCGTATGTAGTTCGTAGTGGAATCT 59.992 44.000 0.00 0.00 0.00 2.40
2200 2257 6.134730 CGTATGTAGTTCGTAGTGGAATCTC 58.865 44.000 0.00 0.00 0.00 2.75
2201 2258 6.018098 CGTATGTAGTTCGTAGTGGAATCTCT 60.018 42.308 0.00 0.00 0.00 3.10
2202 2259 7.170489 CGTATGTAGTTCGTAGTGGAATCTCTA 59.830 40.741 0.00 0.00 0.00 2.43
2203 2260 6.674694 TGTAGTTCGTAGTGGAATCTCTAC 57.325 41.667 0.00 0.00 36.90 2.59
2204 2261 6.175471 TGTAGTTCGTAGTGGAATCTCTACA 58.825 40.000 13.06 0.00 38.94 2.74
2205 2262 6.656270 TGTAGTTCGTAGTGGAATCTCTACAA 59.344 38.462 13.06 6.81 38.94 2.41
2206 2263 6.585695 AGTTCGTAGTGGAATCTCTACAAA 57.414 37.500 13.06 2.89 38.94 2.83
2207 2264 6.622549 AGTTCGTAGTGGAATCTCTACAAAG 58.377 40.000 13.06 2.47 38.94 2.77
2208 2265 6.433404 AGTTCGTAGTGGAATCTCTACAAAGA 59.567 38.462 13.06 0.00 38.94 2.52
2209 2266 6.192234 TCGTAGTGGAATCTCTACAAAGAC 57.808 41.667 13.06 0.00 38.94 3.01
2210 2267 5.944599 TCGTAGTGGAATCTCTACAAAGACT 59.055 40.000 13.06 0.00 38.94 3.24
2211 2268 6.433404 TCGTAGTGGAATCTCTACAAAGACTT 59.567 38.462 13.06 0.00 38.94 3.01
2212 2269 7.609146 TCGTAGTGGAATCTCTACAAAGACTTA 59.391 37.037 13.06 0.00 38.94 2.24
2213 2270 8.407064 CGTAGTGGAATCTCTACAAAGACTTAT 58.593 37.037 13.06 0.00 38.94 1.73
2227 2284 8.943909 ACAAAGACTTATATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2228 2285 7.985752 ACAAAGACTTATATTTAGGAACGGAGG 59.014 37.037 0.00 0.00 0.00 4.30
2229 2286 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
2230 2287 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
2231 2288 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
2232 2289 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
2233 2290 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
2234 2291 7.232330 ACTTATATTTAGGAACGGAGGGAGTAC 59.768 40.741 0.00 0.00 0.00 2.73
2235 2292 2.905415 TTAGGAACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
2236 2293 3.393426 TTAGGAACGGAGGGAGTACAT 57.607 47.619 0.00 0.00 0.00 2.29
2237 2294 1.486211 AGGAACGGAGGGAGTACATG 58.514 55.000 0.00 0.00 0.00 3.21
2238 2295 0.179081 GGAACGGAGGGAGTACATGC 60.179 60.000 0.00 0.00 0.00 4.06
2245 2302 2.171448 GGAGGGAGTACATGCTGTCAAT 59.829 50.000 0.00 0.00 0.00 2.57
2297 2354 0.376852 GAAGTTTGTGCGCAGTGTCA 59.623 50.000 12.22 1.08 0.00 3.58
2441 2498 1.722034 TGAGCTTCAAGAGGGTGACT 58.278 50.000 0.00 0.00 0.00 3.41
2537 2594 3.674997 ACATCCTGCGTTGTAATGAACT 58.325 40.909 0.00 0.00 0.00 3.01
2700 2759 8.158132 TCCACACAAACCAAGTAAAGATACATA 58.842 33.333 0.00 0.00 34.29 2.29
2701 2760 8.956426 CCACACAAACCAAGTAAAGATACATAT 58.044 33.333 0.00 0.00 34.29 1.78
2725 2784 3.093057 CCTCCTAGTTCTAGCACAGTGT 58.907 50.000 1.61 0.00 0.00 3.55
2811 2870 2.259917 TCTGAAGATGCCAGGAGTTCA 58.740 47.619 0.00 0.00 32.73 3.18
2984 3043 5.418524 TGGTTGATGGATTTCTGGTATGTTG 59.581 40.000 0.00 0.00 0.00 3.33
2985 3044 5.163519 GGTTGATGGATTTCTGGTATGTTGG 60.164 44.000 0.00 0.00 0.00 3.77
2986 3045 3.953612 TGATGGATTTCTGGTATGTTGGC 59.046 43.478 0.00 0.00 0.00 4.52
2987 3046 3.448093 TGGATTTCTGGTATGTTGGCA 57.552 42.857 0.00 0.00 0.00 4.92
2988 3047 3.355378 TGGATTTCTGGTATGTTGGCAG 58.645 45.455 0.00 0.00 0.00 4.85
2989 3048 3.245229 TGGATTTCTGGTATGTTGGCAGT 60.245 43.478 0.00 0.00 0.00 4.40
2990 3049 3.763897 GGATTTCTGGTATGTTGGCAGTT 59.236 43.478 0.00 0.00 0.00 3.16
3095 3161 9.567776 TTCAGATTCACCTGTTAAATCTTGTTA 57.432 29.630 0.00 0.00 37.59 2.41
3115 3181 5.299028 TGTTAAAGCTTTGCTGAACTCATCA 59.701 36.000 22.02 1.15 39.62 3.07
3139 3205 8.506437 TCAAAACTAACTGCTAGATCATTTGTG 58.494 33.333 0.00 0.00 30.96 3.33
3180 3253 3.350219 ACGCTATCAAACACCTTCCAT 57.650 42.857 0.00 0.00 0.00 3.41
3201 3274 5.337554 CATGCAAAGACGAATTCATCACAT 58.662 37.500 4.10 0.00 0.00 3.21
3231 3304 1.945394 CCAGTCATAGCAAGACATGGC 59.055 52.381 0.00 0.00 38.46 4.40
3330 3403 2.346099 GCAAAAAGGCGATACTTGCA 57.654 45.000 0.00 0.00 41.55 4.08
3474 3547 6.685527 TTAGATGTAGCTCTACTCACAGTG 57.314 41.667 8.34 0.00 37.00 3.66
3575 3648 7.255801 CCATGTTTAGTAATTTGTGACTGGGTT 60.256 37.037 0.00 0.00 0.00 4.11
3654 3727 2.092699 AGGCCTGAAGATAAAGTGAGGC 60.093 50.000 3.11 0.00 44.44 4.70
3667 3740 2.015736 GTGAGGCTGTCACGATTCAT 57.984 50.000 0.00 0.00 46.22 2.57
3671 3744 1.276138 AGGCTGTCACGATTCATCACA 59.724 47.619 0.00 0.00 0.00 3.58
3672 3745 2.093288 AGGCTGTCACGATTCATCACAT 60.093 45.455 0.00 0.00 0.00 3.21
3715 3788 7.445945 ACTAAAGTGCATGAGAAAGTAGAAGT 58.554 34.615 0.00 0.00 0.00 3.01
3725 3798 8.831550 CATGAGAAAGTAGAAGTTATTAAGCCC 58.168 37.037 0.00 0.00 0.00 5.19
3771 3844 5.639757 TCATGATGAAAACCAATGTTAGCG 58.360 37.500 0.00 0.00 33.30 4.26
3816 3889 5.481473 AGCCACCATCACTTTGTTCATATTT 59.519 36.000 0.00 0.00 0.00 1.40
3841 3914 7.420184 AAAAGAAAAGGGCAAATACATTTCG 57.580 32.000 0.00 0.00 33.28 3.46
4083 4156 1.003580 CTTGTTAGAGGCTGGGAGCAA 59.996 52.381 0.00 0.00 44.75 3.91
4182 4255 2.401583 TGGTCCACATCATCCGAAAG 57.598 50.000 0.00 0.00 0.00 2.62
4183 4256 1.905894 TGGTCCACATCATCCGAAAGA 59.094 47.619 0.00 0.00 0.00 2.52
4211 4284 5.598417 AGTACTGTTGATTTGCTCCCTTTTT 59.402 36.000 0.00 0.00 0.00 1.94
4260 4333 6.293698 AGTTTAGTATCGTCAGTGGGTTTTT 58.706 36.000 0.00 0.00 0.00 1.94
4266 4339 2.162608 TCGTCAGTGGGTTTTTGTGTTG 59.837 45.455 0.00 0.00 0.00 3.33
4273 4346 5.414144 CAGTGGGTTTTTGTGTTGGAATTTT 59.586 36.000 0.00 0.00 0.00 1.82
4300 4391 4.753233 ACTCATCCGACAAAATCTCAGAG 58.247 43.478 0.00 0.00 0.00 3.35
4317 4410 7.468141 TCTCAGAGAAGTGCTAGAATAAACA 57.532 36.000 0.00 0.00 0.00 2.83
4319 4412 7.815068 TCTCAGAGAAGTGCTAGAATAAACAAC 59.185 37.037 0.00 0.00 0.00 3.32
4371 4468 7.040755 TGGTTAGTTTGTGTTACAGAATCATGG 60.041 37.037 6.18 0.00 0.00 3.66
4382 4479 8.046107 TGTTACAGAATCATGGTCATATTGTGA 58.954 33.333 7.84 0.00 30.70 3.58
4425 4541 8.438676 AAGTTGTTTCGGATATATCCTTTGAG 57.561 34.615 25.83 12.51 44.93 3.02
4438 4556 4.255833 TCCTTTGAGAATGCGCAAAATT 57.744 36.364 17.11 3.64 42.00 1.82
4439 4557 4.236935 TCCTTTGAGAATGCGCAAAATTC 58.763 39.130 17.11 14.66 42.00 2.17
4441 4559 4.687483 CCTTTGAGAATGCGCAAAATTCTT 59.313 37.500 21.97 8.67 42.94 2.52
4442 4560 5.389098 CCTTTGAGAATGCGCAAAATTCTTG 60.389 40.000 21.97 13.77 42.94 3.02
4443 4561 4.241590 TGAGAATGCGCAAAATTCTTGT 57.758 36.364 21.97 7.30 42.94 3.16
4444 4562 5.369685 TGAGAATGCGCAAAATTCTTGTA 57.630 34.783 21.97 11.56 42.94 2.41
4445 4563 5.767269 TGAGAATGCGCAAAATTCTTGTAA 58.233 33.333 21.97 9.07 42.94 2.41
4446 4564 6.389091 TGAGAATGCGCAAAATTCTTGTAAT 58.611 32.000 21.97 3.22 42.94 1.89
4447 4565 6.527722 TGAGAATGCGCAAAATTCTTGTAATC 59.472 34.615 21.97 11.40 42.94 1.75
4553 4671 4.771590 TTGTCAATGGATTGCTTCTGAC 57.228 40.909 0.00 0.00 37.68 3.51
4592 4710 2.307098 AGGAGGCAATGAGCTGTAACTT 59.693 45.455 0.00 0.00 44.79 2.66
4607 4725 7.038659 AGCTGTAACTTGATAAGATCACAGAC 58.961 38.462 17.47 12.11 39.39 3.51
4631 4749 9.118236 GACAATTTGATTACAGTTAGTTTCTGC 57.882 33.333 2.79 0.00 36.50 4.26
4632 4750 8.629158 ACAATTTGATTACAGTTAGTTTCTGCA 58.371 29.630 2.79 0.00 36.50 4.41
4634 4752 9.463443 AATTTGATTACAGTTAGTTTCTGCAAC 57.537 29.630 0.00 0.00 36.50 4.17
4635 4753 6.223138 TGATTACAGTTAGTTTCTGCAACG 57.777 37.500 0.00 0.00 40.75 4.10
4730 4849 4.973055 CGTCCGTTTGGGTCGGCA 62.973 66.667 0.00 0.00 46.49 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 59 4.019174 AGGGGTTTATCACAATTCTGCTG 58.981 43.478 0.00 0.00 0.00 4.41
74 79 7.629652 GCTGCATACTAATAGAGCCTAGTAAGG 60.630 44.444 0.00 0.00 46.76 2.69
131 138 4.261994 GGGCAAAAGCTCAAAACTGATGTA 60.262 41.667 0.00 0.00 0.00 2.29
171 180 3.059352 ACATGGCAGTACAAGAAGGAC 57.941 47.619 0.00 0.00 0.00 3.85
249 258 8.947055 ATGCATTTACAATTCCTCCATTTTAC 57.053 30.769 0.00 0.00 0.00 2.01
381 395 1.919816 TGGCCAGCCACTGATCAGA 60.920 57.895 29.27 0.00 41.89 3.27
429 459 5.028549 TGGGAAGATTCTCTTGACTATGC 57.971 43.478 0.00 0.00 36.73 3.14
441 471 4.372656 CCTCGACATACTTGGGAAGATTC 58.627 47.826 0.00 0.00 0.00 2.52
462 492 1.094073 CATACTGCCACTGCTCTGCC 61.094 60.000 0.00 0.00 38.71 4.85
479 509 3.479489 TGAACATGAGCACTGAACACAT 58.521 40.909 0.00 0.00 0.00 3.21
675 709 8.679100 GTCACAGTCTCACAGATAAATAGTACT 58.321 37.037 0.00 0.00 0.00 2.73
676 710 7.916450 GGTCACAGTCTCACAGATAAATAGTAC 59.084 40.741 0.00 0.00 0.00 2.73
677 711 7.834681 AGGTCACAGTCTCACAGATAAATAGTA 59.165 37.037 0.00 0.00 0.00 1.82
678 712 6.665680 AGGTCACAGTCTCACAGATAAATAGT 59.334 38.462 0.00 0.00 0.00 2.12
679 713 7.106439 AGGTCACAGTCTCACAGATAAATAG 57.894 40.000 0.00 0.00 0.00 1.73
707 741 1.217511 GCTCTGAGCAGTGCTAGCA 59.782 57.895 26.33 14.93 42.70 3.49
753 787 1.729586 TACCAGGACTTCTGCAAGGT 58.270 50.000 0.00 0.00 42.05 3.50
819 853 6.875948 ATCTAGAGTGTAGTAGCAGATGTG 57.124 41.667 0.00 0.00 0.00 3.21
820 854 9.008965 CAATATCTAGAGTGTAGTAGCAGATGT 57.991 37.037 0.00 0.00 0.00 3.06
1029 1065 0.392706 ACATGAACCGACTGTGCTGA 59.607 50.000 0.00 0.00 0.00 4.26
1033 1069 4.436050 GCTAATTGACATGAACCGACTGTG 60.436 45.833 0.00 0.00 0.00 3.66
1051 1087 5.128919 CCTGCTTTCAGTATTCAGGCTAAT 58.871 41.667 0.00 0.00 38.00 1.73
1067 1103 3.487372 GAACTGGGAAGTAACCTGCTTT 58.513 45.455 0.00 0.00 0.00 3.51
1071 1107 1.702957 TGGGAACTGGGAAGTAACCTG 59.297 52.381 0.00 0.00 0.00 4.00
1197 1237 3.016031 TGTGCGACATAATCCTTGCATT 58.984 40.909 0.00 0.00 34.54 3.56
1210 1250 2.942376 GTCCCAATATTGATGTGCGACA 59.058 45.455 17.23 0.00 0.00 4.35
1369 1410 5.001874 CCAGGACCTAAGTTTTCCACTTAC 58.998 45.833 0.00 0.00 44.56 2.34
1378 1419 4.850386 ACTGTTATCCCAGGACCTAAGTTT 59.150 41.667 0.00 0.00 36.75 2.66
1458 1499 9.725019 TTGATTCTCAAACAACTACTCATACAT 57.275 29.630 0.00 0.00 32.71 2.29
1513 1554 9.573166 TGAATGTCCTGATAATTTCCGATAATT 57.427 29.630 0.00 0.00 0.00 1.40
1514 1555 9.003658 GTGAATGTCCTGATAATTTCCGATAAT 57.996 33.333 0.00 0.00 0.00 1.28
1675 1721 3.259123 GCCCCCTTTGAATATGCCTTATG 59.741 47.826 0.00 0.00 0.00 1.90
1676 1722 3.116784 TGCCCCCTTTGAATATGCCTTAT 60.117 43.478 0.00 0.00 0.00 1.73
1677 1723 2.246067 TGCCCCCTTTGAATATGCCTTA 59.754 45.455 0.00 0.00 0.00 2.69
1678 1724 1.008206 TGCCCCCTTTGAATATGCCTT 59.992 47.619 0.00 0.00 0.00 4.35
1679 1725 0.636101 TGCCCCCTTTGAATATGCCT 59.364 50.000 0.00 0.00 0.00 4.75
1680 1726 1.043022 CTGCCCCCTTTGAATATGCC 58.957 55.000 0.00 0.00 0.00 4.40
1681 1727 0.390492 GCTGCCCCCTTTGAATATGC 59.610 55.000 0.00 0.00 0.00 3.14
1682 1728 1.043022 GGCTGCCCCCTTTGAATATG 58.957 55.000 7.66 0.00 0.00 1.78
1683 1729 3.539338 GGCTGCCCCCTTTGAATAT 57.461 52.632 7.66 0.00 0.00 1.28
1695 1741 3.643595 TACATGCACTGGGGCTGCC 62.644 63.158 11.05 11.05 33.36 4.85
1696 1742 2.045045 TACATGCACTGGGGCTGC 60.045 61.111 0.00 0.00 35.03 5.25
1697 1743 2.117156 GCTACATGCACTGGGGCTG 61.117 63.158 0.00 0.00 42.31 4.85
1698 1744 2.262774 GAGCTACATGCACTGGGGCT 62.263 60.000 13.29 13.29 45.94 5.19
1699 1745 1.821332 GAGCTACATGCACTGGGGC 60.821 63.158 0.00 0.00 45.94 5.80
1700 1746 1.153086 GGAGCTACATGCACTGGGG 60.153 63.158 0.00 0.00 45.94 4.96
1701 1747 1.153086 GGGAGCTACATGCACTGGG 60.153 63.158 0.00 0.00 45.94 4.45
1702 1748 1.522355 CGGGAGCTACATGCACTGG 60.522 63.158 0.00 0.00 45.94 4.00
1703 1749 4.115279 CGGGAGCTACATGCACTG 57.885 61.111 0.00 0.00 45.94 3.66
1718 1764 3.787001 GACCCTTCCCCAGAGCGG 61.787 72.222 0.00 0.00 0.00 5.52
1719 1765 3.787001 GGACCCTTCCCCAGAGCG 61.787 72.222 0.00 0.00 35.57 5.03
1720 1766 3.787001 CGGACCCTTCCCCAGAGC 61.787 72.222 0.00 0.00 38.99 4.09
1721 1767 2.038975 TCGGACCCTTCCCCAGAG 59.961 66.667 0.00 0.00 38.99 3.35
1722 1768 2.284405 GTCGGACCCTTCCCCAGA 60.284 66.667 0.00 0.00 38.99 3.86
1723 1769 3.400054 GGTCGGACCCTTCCCCAG 61.400 72.222 16.55 0.00 38.99 4.45
1724 1770 4.257810 TGGTCGGACCCTTCCCCA 62.258 66.667 23.81 0.69 38.99 4.96
1725 1771 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
1726 1772 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1727 1773 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1728 1774 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1729 1775 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1730 1776 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1731 1777 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1732 1778 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1733 1779 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1738 1784 3.867216 GCGTACAATAGACCCAAAGTGGT 60.867 47.826 0.00 0.00 42.79 4.16
1739 1785 2.676342 GCGTACAATAGACCCAAAGTGG 59.324 50.000 0.00 0.00 37.25 4.00
1740 1786 3.331150 TGCGTACAATAGACCCAAAGTG 58.669 45.455 0.00 0.00 0.00 3.16
1741 1787 3.596214 CTGCGTACAATAGACCCAAAGT 58.404 45.455 0.00 0.00 0.00 2.66
1742 1788 2.351726 GCTGCGTACAATAGACCCAAAG 59.648 50.000 0.00 0.00 0.00 2.77
1743 1789 2.352388 GCTGCGTACAATAGACCCAAA 58.648 47.619 0.00 0.00 0.00 3.28
1744 1790 1.406341 GGCTGCGTACAATAGACCCAA 60.406 52.381 0.00 0.00 0.00 4.12
1745 1791 0.177141 GGCTGCGTACAATAGACCCA 59.823 55.000 0.00 0.00 0.00 4.51
1746 1792 0.464452 AGGCTGCGTACAATAGACCC 59.536 55.000 0.00 0.00 0.00 4.46
1747 1793 2.311124 AAGGCTGCGTACAATAGACC 57.689 50.000 0.00 0.00 0.00 3.85
1748 1794 2.608090 GGAAAGGCTGCGTACAATAGAC 59.392 50.000 0.00 0.00 0.00 2.59
1749 1795 2.419574 GGGAAAGGCTGCGTACAATAGA 60.420 50.000 0.00 0.00 0.00 1.98
1750 1796 1.940613 GGGAAAGGCTGCGTACAATAG 59.059 52.381 0.00 0.00 0.00 1.73
1751 1797 1.557832 AGGGAAAGGCTGCGTACAATA 59.442 47.619 0.00 0.00 0.00 1.90
1752 1798 0.328258 AGGGAAAGGCTGCGTACAAT 59.672 50.000 0.00 0.00 0.00 2.71
1753 1799 0.978151 TAGGGAAAGGCTGCGTACAA 59.022 50.000 0.00 0.00 0.00 2.41
1754 1800 0.248289 GTAGGGAAAGGCTGCGTACA 59.752 55.000 0.00 0.00 36.89 2.90
1755 1801 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1756 1802 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1757 1803 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1758 1804 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
1759 1805 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
1760 1806 2.424956 GCAGAAATGTAGGGAAAGGCTG 59.575 50.000 0.00 0.00 0.00 4.85
1761 1807 2.041620 TGCAGAAATGTAGGGAAAGGCT 59.958 45.455 0.00 0.00 0.00 4.58
1762 1808 2.446435 TGCAGAAATGTAGGGAAAGGC 58.554 47.619 0.00 0.00 0.00 4.35
1763 1809 4.335416 TCTTGCAGAAATGTAGGGAAAGG 58.665 43.478 0.00 0.00 0.00 3.11
1764 1810 4.397417 CCTCTTGCAGAAATGTAGGGAAAG 59.603 45.833 0.00 0.00 0.00 2.62
1765 1811 4.335416 CCTCTTGCAGAAATGTAGGGAAA 58.665 43.478 0.00 0.00 0.00 3.13
1766 1812 3.873801 GCCTCTTGCAGAAATGTAGGGAA 60.874 47.826 0.00 0.00 40.77 3.97
1767 1813 2.356125 GCCTCTTGCAGAAATGTAGGGA 60.356 50.000 0.00 0.00 40.77 4.20
1768 1814 2.019984 GCCTCTTGCAGAAATGTAGGG 58.980 52.381 0.00 0.00 40.77 3.53
1769 1815 2.681848 CAGCCTCTTGCAGAAATGTAGG 59.318 50.000 0.00 0.00 44.83 3.18
1770 1816 3.341823 ACAGCCTCTTGCAGAAATGTAG 58.658 45.455 0.00 0.00 44.83 2.74
1771 1817 3.423539 ACAGCCTCTTGCAGAAATGTA 57.576 42.857 0.00 0.00 44.83 2.29
1772 1818 2.283145 ACAGCCTCTTGCAGAAATGT 57.717 45.000 0.00 0.00 44.83 2.71
1773 1819 3.572584 GAAACAGCCTCTTGCAGAAATG 58.427 45.455 0.00 0.00 44.83 2.32
1774 1820 2.560105 GGAAACAGCCTCTTGCAGAAAT 59.440 45.455 0.00 0.00 44.83 2.17
1775 1821 1.956477 GGAAACAGCCTCTTGCAGAAA 59.044 47.619 0.00 0.00 44.83 2.52
1776 1822 1.133823 TGGAAACAGCCTCTTGCAGAA 60.134 47.619 0.00 0.00 44.83 3.02
1777 1823 0.473755 TGGAAACAGCCTCTTGCAGA 59.526 50.000 0.00 0.00 44.83 4.26
1778 1824 3.025924 TGGAAACAGCCTCTTGCAG 57.974 52.632 0.00 0.00 44.83 4.41
1789 1835 1.476110 CGGGTTCAAGTCCTGGAAACA 60.476 52.381 0.00 0.00 32.36 2.83
1790 1836 1.235724 CGGGTTCAAGTCCTGGAAAC 58.764 55.000 0.00 0.00 0.00 2.78
1791 1837 0.841289 ACGGGTTCAAGTCCTGGAAA 59.159 50.000 0.00 0.00 35.79 3.13
1792 1838 0.107831 CACGGGTTCAAGTCCTGGAA 59.892 55.000 0.00 0.00 35.79 3.53
1793 1839 0.761323 TCACGGGTTCAAGTCCTGGA 60.761 55.000 0.00 0.00 35.79 3.86
1794 1840 0.602905 GTCACGGGTTCAAGTCCTGG 60.603 60.000 0.00 0.00 35.79 4.45
1795 1841 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
1796 1842 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
1797 1843 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
1798 1844 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
1799 1845 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
1800 1846 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
1801 1847 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
1802 1848 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
1803 1849 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
1813 1859 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
1814 1860 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
1815 1861 0.178995 TTGCTGCCTTGTGACCATGA 60.179 50.000 0.00 0.00 0.00 3.07
1816 1862 0.038892 GTTGCTGCCTTGTGACCATG 60.039 55.000 0.00 0.00 0.00 3.66
1817 1863 0.178981 AGTTGCTGCCTTGTGACCAT 60.179 50.000 0.00 0.00 0.00 3.55
1818 1864 0.395586 AAGTTGCTGCCTTGTGACCA 60.396 50.000 0.00 0.00 0.00 4.02
1819 1865 0.746659 AAAGTTGCTGCCTTGTGACC 59.253 50.000 0.00 0.00 0.00 4.02
1820 1866 2.287608 GGTAAAGTTGCTGCCTTGTGAC 60.288 50.000 0.00 0.00 0.00 3.67
1821 1867 1.953686 GGTAAAGTTGCTGCCTTGTGA 59.046 47.619 0.00 0.00 0.00 3.58
1822 1868 1.680735 TGGTAAAGTTGCTGCCTTGTG 59.319 47.619 0.00 0.00 0.00 3.33
1823 1869 1.681264 GTGGTAAAGTTGCTGCCTTGT 59.319 47.619 0.00 0.00 0.00 3.16
1824 1870 1.956477 AGTGGTAAAGTTGCTGCCTTG 59.044 47.619 0.00 0.00 0.00 3.61
1825 1871 1.956477 CAGTGGTAAAGTTGCTGCCTT 59.044 47.619 0.00 0.00 0.00 4.35
1826 1872 1.609208 CAGTGGTAAAGTTGCTGCCT 58.391 50.000 0.00 0.00 0.00 4.75
1827 1873 0.039165 GCAGTGGTAAAGTTGCTGCC 60.039 55.000 0.00 0.00 44.61 4.85
1828 1874 0.385974 CGCAGTGGTAAAGTTGCTGC 60.386 55.000 0.00 0.00 46.22 5.25
1829 1875 0.385974 GCGCAGTGGTAAAGTTGCTG 60.386 55.000 0.30 0.00 34.50 4.41
1830 1876 1.515521 GGCGCAGTGGTAAAGTTGCT 61.516 55.000 10.83 0.00 34.50 3.91
1831 1877 1.081442 GGCGCAGTGGTAAAGTTGC 60.081 57.895 10.83 0.00 0.00 4.17
1832 1878 0.665835 TTGGCGCAGTGGTAAAGTTG 59.334 50.000 10.83 0.00 0.00 3.16
1833 1879 0.951558 CTTGGCGCAGTGGTAAAGTT 59.048 50.000 10.83 0.00 0.00 2.66
1834 1880 0.889186 CCTTGGCGCAGTGGTAAAGT 60.889 55.000 10.83 0.00 0.00 2.66
1835 1881 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
1836 1882 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
1837 1883 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
1838 1884 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
1846 1892 3.350031 ATGAAGGGGAGCCTTGGCG 62.350 63.158 5.95 0.00 0.00 5.69
1847 1893 1.755783 CATGAAGGGGAGCCTTGGC 60.756 63.158 2.97 2.97 0.00 4.52
1848 1894 1.755783 GCATGAAGGGGAGCCTTGG 60.756 63.158 0.00 0.00 0.00 3.61
1849 1895 0.396695 ATGCATGAAGGGGAGCCTTG 60.397 55.000 0.00 0.00 0.00 3.61
1850 1896 1.225373 TATGCATGAAGGGGAGCCTT 58.775 50.000 10.16 0.00 0.00 4.35
1851 1897 1.144503 CTTATGCATGAAGGGGAGCCT 59.855 52.381 10.16 0.00 0.00 4.58
1852 1898 1.613836 CTTATGCATGAAGGGGAGCC 58.386 55.000 10.16 0.00 0.00 4.70
1853 1899 1.613836 CCTTATGCATGAAGGGGAGC 58.386 55.000 19.37 0.00 39.96 4.70
1854 1900 1.613836 GCCTTATGCATGAAGGGGAG 58.386 55.000 24.32 9.48 43.28 4.30
1855 1901 3.827505 GCCTTATGCATGAAGGGGA 57.172 52.632 24.32 0.00 43.28 4.81
2074 2131 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
2075 2132 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
2076 2133 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
2077 2134 8.943909 ATAAAGACTTACATTTAGGAACGGAG 57.056 34.615 0.00 0.00 0.00 4.63
2093 2150 9.829507 CATCTGGTGAAATCTCTATAAAGACTT 57.170 33.333 0.00 0.00 0.00 3.01
2094 2151 8.428063 CCATCTGGTGAAATCTCTATAAAGACT 58.572 37.037 0.00 0.00 0.00 3.24
2095 2152 8.424918 TCCATCTGGTGAAATCTCTATAAAGAC 58.575 37.037 0.00 0.00 36.34 3.01
2096 2153 8.424918 GTCCATCTGGTGAAATCTCTATAAAGA 58.575 37.037 0.00 0.00 36.34 2.52
2097 2154 8.428063 AGTCCATCTGGTGAAATCTCTATAAAG 58.572 37.037 0.00 0.00 36.34 1.85
2098 2155 8.324191 AGTCCATCTGGTGAAATCTCTATAAA 57.676 34.615 0.00 0.00 36.34 1.40
2099 2156 7.921041 AGTCCATCTGGTGAAATCTCTATAA 57.079 36.000 0.00 0.00 36.34 0.98
2100 2157 8.004801 TGTAGTCCATCTGGTGAAATCTCTATA 58.995 37.037 0.00 0.00 36.34 1.31
2101 2158 6.841229 TGTAGTCCATCTGGTGAAATCTCTAT 59.159 38.462 0.00 0.00 36.34 1.98
2102 2159 6.194967 TGTAGTCCATCTGGTGAAATCTCTA 58.805 40.000 0.00 0.00 36.34 2.43
2103 2160 5.026121 TGTAGTCCATCTGGTGAAATCTCT 58.974 41.667 0.00 0.00 36.34 3.10
2104 2161 5.344743 TGTAGTCCATCTGGTGAAATCTC 57.655 43.478 0.00 0.00 36.34 2.75
2105 2162 5.965033 ATGTAGTCCATCTGGTGAAATCT 57.035 39.130 0.00 0.00 36.34 2.40
2106 2163 6.708054 CCTTATGTAGTCCATCTGGTGAAATC 59.292 42.308 0.00 0.00 34.86 2.17
2107 2164 6.386927 TCCTTATGTAGTCCATCTGGTGAAAT 59.613 38.462 0.00 0.00 34.86 2.17
2108 2165 5.724370 TCCTTATGTAGTCCATCTGGTGAAA 59.276 40.000 0.00 0.00 34.86 2.69
2109 2166 5.277250 TCCTTATGTAGTCCATCTGGTGAA 58.723 41.667 0.00 0.00 34.86 3.18
2110 2167 4.878968 TCCTTATGTAGTCCATCTGGTGA 58.121 43.478 0.00 0.00 34.86 4.02
2111 2168 4.502259 GCTCCTTATGTAGTCCATCTGGTG 60.502 50.000 0.00 0.00 34.86 4.17
2112 2169 3.643792 GCTCCTTATGTAGTCCATCTGGT 59.356 47.826 0.00 0.00 34.86 4.00
2113 2170 3.643320 TGCTCCTTATGTAGTCCATCTGG 59.357 47.826 0.00 0.00 34.86 3.86
2114 2171 4.944619 TGCTCCTTATGTAGTCCATCTG 57.055 45.455 0.00 0.00 34.86 2.90
2115 2172 5.957771 TTTGCTCCTTATGTAGTCCATCT 57.042 39.130 0.00 0.00 34.86 2.90
2116 2173 6.767902 TCATTTTGCTCCTTATGTAGTCCATC 59.232 38.462 0.00 0.00 34.86 3.51
2117 2174 6.662755 TCATTTTGCTCCTTATGTAGTCCAT 58.337 36.000 0.00 0.00 37.58 3.41
2118 2175 6.061022 TCATTTTGCTCCTTATGTAGTCCA 57.939 37.500 0.00 0.00 0.00 4.02
2119 2176 7.283127 TCATTCATTTTGCTCCTTATGTAGTCC 59.717 37.037 0.00 0.00 0.00 3.85
2120 2177 8.213518 TCATTCATTTTGCTCCTTATGTAGTC 57.786 34.615 0.00 0.00 0.00 2.59
2121 2178 8.579850 TTCATTCATTTTGCTCCTTATGTAGT 57.420 30.769 0.00 0.00 0.00 2.73
2122 2179 9.674824 GATTCATTCATTTTGCTCCTTATGTAG 57.325 33.333 0.00 0.00 0.00 2.74
2123 2180 8.632679 GGATTCATTCATTTTGCTCCTTATGTA 58.367 33.333 0.00 0.00 0.00 2.29
2124 2181 7.124599 TGGATTCATTCATTTTGCTCCTTATGT 59.875 33.333 0.00 0.00 0.00 2.29
2125 2182 7.494211 TGGATTCATTCATTTTGCTCCTTATG 58.506 34.615 0.00 0.00 0.00 1.90
2126 2183 7.664552 TGGATTCATTCATTTTGCTCCTTAT 57.335 32.000 0.00 0.00 0.00 1.73
2127 2184 7.479352 TTGGATTCATTCATTTTGCTCCTTA 57.521 32.000 0.00 0.00 0.00 2.69
2128 2185 6.363167 TTGGATTCATTCATTTTGCTCCTT 57.637 33.333 0.00 0.00 0.00 3.36
2129 2186 6.013984 AGTTTGGATTCATTCATTTTGCTCCT 60.014 34.615 0.00 0.00 0.00 3.69
2130 2187 6.168389 AGTTTGGATTCATTCATTTTGCTCC 58.832 36.000 0.00 0.00 0.00 4.70
2131 2188 7.662604 AAGTTTGGATTCATTCATTTTGCTC 57.337 32.000 0.00 0.00 0.00 4.26
2132 2189 9.558396 TTTAAGTTTGGATTCATTCATTTTGCT 57.442 25.926 0.00 0.00 0.00 3.91
2137 2194 9.504708 TGCATTTTAAGTTTGGATTCATTCATT 57.495 25.926 0.00 0.00 0.00 2.57
2138 2195 9.675464 ATGCATTTTAAGTTTGGATTCATTCAT 57.325 25.926 0.00 0.00 0.00 2.57
2139 2196 9.153721 GATGCATTTTAAGTTTGGATTCATTCA 57.846 29.630 0.00 0.00 0.00 2.57
2140 2197 9.374838 AGATGCATTTTAAGTTTGGATTCATTC 57.625 29.630 0.00 0.00 0.00 2.67
2142 2199 9.807649 GTAGATGCATTTTAAGTTTGGATTCAT 57.192 29.630 0.00 0.00 0.00 2.57
2143 2200 8.801299 TGTAGATGCATTTTAAGTTTGGATTCA 58.199 29.630 0.00 0.00 0.00 2.57
2144 2201 9.807649 ATGTAGATGCATTTTAAGTTTGGATTC 57.192 29.630 0.00 0.00 0.00 2.52
2147 2204 9.237187 TGTATGTAGATGCATTTTAAGTTTGGA 57.763 29.630 0.00 0.00 0.00 3.53
2151 2208 8.559536 CGGATGTATGTAGATGCATTTTAAGTT 58.440 33.333 0.00 0.00 35.26 2.66
2152 2209 7.715249 ACGGATGTATGTAGATGCATTTTAAGT 59.285 33.333 0.00 0.14 35.26 2.24
2153 2210 8.087982 ACGGATGTATGTAGATGCATTTTAAG 57.912 34.615 0.00 0.00 35.26 1.85
2154 2211 9.719355 ATACGGATGTATGTAGATGCATTTTAA 57.281 29.630 0.00 0.00 39.81 1.52
2169 2226 6.072838 CCACTACGAACTACATACGGATGTAT 60.073 42.308 20.64 7.28 45.42 2.29
2170 2227 5.237127 CCACTACGAACTACATACGGATGTA 59.763 44.000 19.32 19.32 44.77 2.29
2172 2229 4.274214 TCCACTACGAACTACATACGGATG 59.726 45.833 5.94 5.94 39.16 3.51
2173 2230 4.454678 TCCACTACGAACTACATACGGAT 58.545 43.478 0.00 0.00 0.00 4.18
2174 2231 3.872696 TCCACTACGAACTACATACGGA 58.127 45.455 0.00 0.00 0.00 4.69
2175 2232 4.621068 TTCCACTACGAACTACATACGG 57.379 45.455 0.00 0.00 0.00 4.02
2176 2233 6.018098 AGAGATTCCACTACGAACTACATACG 60.018 42.308 0.00 0.00 0.00 3.06
2177 2234 7.261829 AGAGATTCCACTACGAACTACATAC 57.738 40.000 0.00 0.00 0.00 2.39
2178 2235 7.989170 TGTAGAGATTCCACTACGAACTACATA 59.011 37.037 0.00 0.00 40.98 2.29
2179 2236 6.827251 TGTAGAGATTCCACTACGAACTACAT 59.173 38.462 0.00 0.00 40.98 2.29
2180 2237 6.175471 TGTAGAGATTCCACTACGAACTACA 58.825 40.000 0.00 0.00 40.98 2.74
2181 2238 6.674694 TGTAGAGATTCCACTACGAACTAC 57.325 41.667 0.00 0.00 40.98 2.73
2182 2239 7.609146 TCTTTGTAGAGATTCCACTACGAACTA 59.391 37.037 13.00 6.26 40.98 2.24
2183 2240 6.433404 TCTTTGTAGAGATTCCACTACGAACT 59.567 38.462 13.00 0.00 40.98 3.01
2184 2241 6.527372 GTCTTTGTAGAGATTCCACTACGAAC 59.473 42.308 13.00 6.29 40.98 3.95
2185 2242 6.433404 AGTCTTTGTAGAGATTCCACTACGAA 59.567 38.462 14.82 14.82 40.98 3.85
2186 2243 5.944599 AGTCTTTGTAGAGATTCCACTACGA 59.055 40.000 0.00 8.38 40.98 3.43
2187 2244 6.197364 AGTCTTTGTAGAGATTCCACTACG 57.803 41.667 11.38 0.00 40.98 3.51
2202 2259 7.985752 CCTCCGTTCCTAAATATAAGTCTTTGT 59.014 37.037 0.00 0.00 0.00 2.83
2203 2260 7.441458 CCCTCCGTTCCTAAATATAAGTCTTTG 59.559 40.741 0.00 0.00 0.00 2.77
2204 2261 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
2205 2262 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
2206 2263 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
2207 2264 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
2208 2265 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
2209 2266 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
2210 2267 7.068702 TGTACTCCCTCCGTTCCTAAATATAA 58.931 38.462 0.00 0.00 0.00 0.98
2211 2268 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
2212 2269 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
2213 2270 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
2214 2271 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
2215 2272 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
2216 2273 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
2217 2274 2.662866 CATGTACTCCCTCCGTTCCTA 58.337 52.381 0.00 0.00 0.00 2.94
2218 2275 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
2219 2276 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
2220 2277 0.824759 AGCATGTACTCCCTCCGTTC 59.175 55.000 0.00 0.00 0.00 3.95
2221 2278 0.537188 CAGCATGTACTCCCTCCGTT 59.463 55.000 0.00 0.00 0.00 4.44
2222 2279 2.202866 CAGCATGTACTCCCTCCGT 58.797 57.895 0.00 0.00 0.00 4.69
2297 2354 6.430864 TGACTAGTTCAGAGATCATTCCTCT 58.569 40.000 0.00 0.00 41.35 3.69
2537 2594 4.069304 CGTTTTTGGAGACCTGGATTGTA 58.931 43.478 0.00 0.00 0.00 2.41
2700 2759 5.026790 ACTGTGCTAGAACTAGGAGGAAAT 58.973 41.667 1.64 0.00 34.15 2.17
2701 2760 4.220821 CACTGTGCTAGAACTAGGAGGAAA 59.779 45.833 1.64 0.00 34.15 3.13
2704 2763 3.093057 ACACTGTGCTAGAACTAGGAGG 58.907 50.000 7.90 6.42 34.15 4.30
2811 2870 2.104963 GGTGGAAGTCTGAAGTTCACCT 59.895 50.000 0.08 0.00 36.68 4.00
3115 3181 8.621532 TCACAAATGATCTAGCAGTTAGTTTT 57.378 30.769 0.00 0.00 0.00 2.43
3139 3205 6.591834 AGCGTAATCTTTGCATATGACCTATC 59.408 38.462 6.97 0.00 0.00 2.08
3180 3253 5.375417 AATGTGATGAATTCGTCTTTGCA 57.625 34.783 24.46 18.03 33.19 4.08
3201 3274 3.419943 TGCTATGACTGGCATGACAAAA 58.580 40.909 6.18 0.00 37.87 2.44
3231 3304 4.034858 AGCATTGATCTTGTAATGAGCACG 59.965 41.667 7.49 0.00 36.08 5.34
3281 3354 4.578871 TGTCATCGACAAATCTCAACCAT 58.421 39.130 0.00 0.00 39.78 3.55
3330 3403 8.103305 TCTCTGCCTCTTTAATACTTCAAACAT 58.897 33.333 0.00 0.00 0.00 2.71
3474 3547 6.295249 TGGATTCATTTTCAAGTTTTTCCCC 58.705 36.000 0.00 0.00 0.00 4.81
3580 3653 3.606687 GAAGAAGCGGGAAATCCTACAA 58.393 45.455 0.00 0.00 35.95 2.41
3654 3727 3.934579 TCCAATGTGATGAATCGTGACAG 59.065 43.478 0.84 0.00 0.00 3.51
3667 3740 0.325933 CAGCAGACCCTCCAATGTGA 59.674 55.000 0.00 0.00 0.00 3.58
3671 3744 1.280421 GTCTTCAGCAGACCCTCCAAT 59.720 52.381 0.00 0.00 45.84 3.16
3672 3745 0.687354 GTCTTCAGCAGACCCTCCAA 59.313 55.000 0.00 0.00 45.84 3.53
3698 3771 8.338986 GGCTTAATAACTTCTACTTTCTCATGC 58.661 37.037 0.00 0.00 0.00 4.06
3699 3772 8.831550 GGGCTTAATAACTTCTACTTTCTCATG 58.168 37.037 0.00 0.00 0.00 3.07
3715 3788 4.513406 ACAGGGATTTCGGGCTTAATAA 57.487 40.909 0.00 0.00 0.00 1.40
3725 3798 4.568152 AGACACAAAAACAGGGATTTCG 57.432 40.909 0.00 0.00 0.00 3.46
3816 3889 8.145122 ACGAAATGTATTTGCCCTTTTCTTTTA 58.855 29.630 0.00 0.00 0.00 1.52
3828 3901 2.095213 TCCGCTGACGAAATGTATTTGC 59.905 45.455 0.00 0.00 43.93 3.68
3829 3902 4.142902 ACTTCCGCTGACGAAATGTATTTG 60.143 41.667 0.00 0.00 43.93 2.32
3837 3910 3.434299 GGAATAAACTTCCGCTGACGAAA 59.566 43.478 0.00 0.00 43.93 3.46
3841 3914 2.678336 CAGGGAATAAACTTCCGCTGAC 59.322 50.000 13.04 0.00 38.25 3.51
4099 4172 4.810790 CAGACATCGTCTAGTTCCAGTTT 58.189 43.478 0.00 0.00 41.37 2.66
4182 4255 5.106515 GGGAGCAAATCAACAGTACTCTTTC 60.107 44.000 0.00 0.00 0.00 2.62
4183 4256 4.762251 GGGAGCAAATCAACAGTACTCTTT 59.238 41.667 0.00 0.00 0.00 2.52
4211 4284 4.142271 CCCGATTACAAAAGCATAGGCAAA 60.142 41.667 0.67 0.00 44.61 3.68
4273 4346 3.515502 AGATTTTGTCGGATGAGTCAGGA 59.484 43.478 0.00 0.00 0.00 3.86
4300 4391 8.947115 AGGTAATGTTGTTTATTCTAGCACTTC 58.053 33.333 0.00 0.00 0.00 3.01
4317 4410 9.950496 GAAGTATCATCATATCCAGGTAATGTT 57.050 33.333 4.36 0.00 0.00 2.71
4319 4412 8.766476 AGGAAGTATCATCATATCCAGGTAATG 58.234 37.037 0.00 0.00 0.00 1.90
4425 4541 5.576384 TGGATTACAAGAATTTTGCGCATTC 59.424 36.000 12.75 12.99 0.00 2.67
4438 4556 7.618907 TCAATTTCATGGGATTGGATTACAAGA 59.381 33.333 16.65 0.00 43.48 3.02
4439 4557 7.784037 TCAATTTCATGGGATTGGATTACAAG 58.216 34.615 16.65 0.00 43.48 3.16
4441 4559 7.345132 ACATCAATTTCATGGGATTGGATTACA 59.655 33.333 16.65 3.26 34.74 2.41
4442 4560 7.654520 CACATCAATTTCATGGGATTGGATTAC 59.345 37.037 16.65 0.00 34.74 1.89
4443 4561 7.345132 ACACATCAATTTCATGGGATTGGATTA 59.655 33.333 16.65 4.04 34.74 1.75
4444 4562 6.157297 ACACATCAATTTCATGGGATTGGATT 59.843 34.615 16.65 5.36 34.74 3.01
4445 4563 5.664006 ACACATCAATTTCATGGGATTGGAT 59.336 36.000 16.65 9.61 34.74 3.41
4446 4564 5.024785 ACACATCAATTTCATGGGATTGGA 58.975 37.500 16.65 8.31 34.74 3.53
4447 4565 5.347620 ACACATCAATTTCATGGGATTGG 57.652 39.130 16.65 8.39 34.74 3.16
4553 4671 1.200716 CCTGGTTGCAGCATACAGTTG 59.799 52.381 19.77 7.17 0.00 3.16
4607 4725 9.462174 TTGCAGAAACTAACTGTAATCAAATTG 57.538 29.630 0.00 0.00 35.71 2.32
4631 4749 6.086765 GCAGTCATTTCAATCAAGTAACGTTG 59.913 38.462 11.99 0.00 0.00 4.10
4632 4750 6.142817 GCAGTCATTTCAATCAAGTAACGTT 58.857 36.000 5.88 5.88 0.00 3.99
4634 4752 4.783036 CGCAGTCATTTCAATCAAGTAACG 59.217 41.667 0.00 0.00 0.00 3.18
4635 4753 4.554973 GCGCAGTCATTTCAATCAAGTAAC 59.445 41.667 0.30 0.00 0.00 2.50
4730 4849 3.284449 GCCGCCACTTTTGTCCGT 61.284 61.111 0.00 0.00 0.00 4.69
4997 5122 2.311463 CGAGTGGTAGTGGATGAGGAT 58.689 52.381 0.00 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.