Multiple sequence alignment - TraesCS5B01G073100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G073100 chr5B 100.000 6655 0 0 1 6655 86551256 86544602 0.000000e+00 12290.0
1 TraesCS5B01G073100 chr5B 89.573 422 38 3 3 424 488118698 488119113 1.270000e-146 531.0
2 TraesCS5B01G073100 chr5B 80.473 338 52 12 491 818 488119107 488119440 5.150000e-61 246.0
3 TraesCS5B01G073100 chr5B 99.174 121 1 0 3387 3507 86547756 86547636 1.120000e-52 219.0
4 TraesCS5B01G073100 chr5B 99.174 121 1 0 3501 3621 86547870 86547750 1.120000e-52 219.0
5 TraesCS5B01G073100 chr5B 92.708 96 7 0 5392 5487 86545802 86545707 9.000000e-29 139.0
6 TraesCS5B01G073100 chr5B 92.708 96 7 0 5455 5550 86545865 86545770 9.000000e-29 139.0
7 TraesCS5B01G073100 chr5A 97.074 2666 63 7 852 3511 74110827 74108171 0.000000e+00 4477.0
8 TraesCS5B01G073100 chr5A 93.497 2691 102 23 3501 6150 74108293 74105635 0.000000e+00 3932.0
9 TraesCS5B01G073100 chr5A 89.143 350 32 2 6248 6591 74078211 74077862 1.330000e-116 431.0
10 TraesCS5B01G073100 chr5A 86.232 138 19 0 5350 5487 74106380 74106243 4.160000e-32 150.0
11 TraesCS5B01G073100 chr5A 92.708 96 7 0 5455 5550 74106401 74106306 9.000000e-29 139.0
12 TraesCS5B01G073100 chr5A 96.825 63 2 0 6151 6213 74104972 74104910 9.130000e-19 106.0
13 TraesCS5B01G073100 chr5D 96.560 2645 60 16 856 3498 77080961 77078346 0.000000e+00 4351.0
14 TraesCS5B01G073100 chr5D 95.106 1369 57 7 3673 5037 77078318 77076956 0.000000e+00 2148.0
15 TraesCS5B01G073100 chr5D 96.610 531 18 0 4957 5487 77076958 77076428 0.000000e+00 881.0
16 TraesCS5B01G073100 chr5D 88.120 665 56 14 5453 6107 77076525 77075874 0.000000e+00 769.0
17 TraesCS5B01G073100 chr5D 90.094 424 41 1 5 428 232587247 232587669 3.510000e-152 549.0
18 TraesCS5B01G073100 chr5D 89.810 422 43 0 3 424 407009775 407009354 5.870000e-150 542.0
19 TraesCS5B01G073100 chr5D 89.336 422 45 0 3 424 37050641 37050220 1.270000e-146 531.0
20 TraesCS5B01G073100 chr5D 89.100 422 46 0 3 424 33045140 33045561 5.910000e-145 525.0
21 TraesCS5B01G073100 chr5D 88.444 450 31 10 6213 6655 77075547 77075112 2.130000e-144 523.0
22 TraesCS5B01G073100 chr5D 81.957 327 48 10 500 818 512452472 512452795 3.960000e-67 267.0
23 TraesCS5B01G073100 chr5D 80.838 334 49 11 491 818 33045555 33045879 1.430000e-61 248.0
24 TraesCS5B01G073100 chr5D 94.406 143 5 2 3501 3642 77078458 77078318 4.040000e-52 217.0
25 TraesCS5B01G073100 chr5D 100.000 31 0 0 420 450 526868056 526868026 2.590000e-04 58.4
26 TraesCS5B01G073100 chr5D 100.000 29 0 0 422 450 294559557 294559585 3.000000e-03 54.7
27 TraesCS5B01G073100 chr5D 100.000 29 0 0 422 450 443937562 443937534 3.000000e-03 54.7
28 TraesCS5B01G073100 chr7D 89.336 422 45 0 3 424 497567841 497568262 1.270000e-146 531.0
29 TraesCS5B01G073100 chr7D 89.100 422 45 1 3 424 234800563 234800143 2.130000e-144 523.0
30 TraesCS5B01G073100 chr7D 84.364 275 38 4 499 770 124639842 124639570 1.420000e-66 265.0
31 TraesCS5B01G073100 chr1D 89.311 421 44 1 3 423 318550885 318551304 1.640000e-145 527.0
32 TraesCS5B01G073100 chr1D 84.211 323 44 5 500 818 52740370 52740689 2.330000e-79 307.0
33 TraesCS5B01G073100 chr1D 83.486 327 45 9 498 818 318551307 318551630 5.050000e-76 296.0
34 TraesCS5B01G073100 chr1D 97.059 34 1 0 417 450 47714901 47714934 2.590000e-04 58.4
35 TraesCS5B01G073100 chr1D 100.000 30 0 0 421 450 476229523 476229494 1.000000e-03 56.5
36 TraesCS5B01G073100 chr4A 88.993 427 44 3 3 428 5249762 5250186 5.910000e-145 525.0
37 TraesCS5B01G073100 chr3A 80.342 351 57 10 491 832 673823992 673824339 8.560000e-64 255.0
38 TraesCS5B01G073100 chr7B 80.422 332 51 10 491 818 411323365 411323686 2.400000e-59 241.0
39 TraesCS5B01G073100 chr2B 80.119 337 53 11 491 822 28892371 28892698 8.620000e-59 239.0
40 TraesCS5B01G073100 chr2B 92.157 51 1 3 451 500 629868943 629868895 1.200000e-07 69.4
41 TraesCS5B01G073100 chr1A 91.071 56 4 1 442 496 550954742 550954687 2.570000e-09 75.0
42 TraesCS5B01G073100 chr1A 88.462 52 4 2 447 497 35538407 35538457 2.000000e-05 62.1
43 TraesCS5B01G073100 chr2A 82.927 82 6 2 423 497 747601839 747601919 4.310000e-07 67.6
44 TraesCS5B01G073100 chr2D 100.000 33 0 0 418 450 215846509 215846477 2.000000e-05 62.1
45 TraesCS5B01G073100 chr2D 96.875 32 1 0 447 478 549503128 549503159 3.000000e-03 54.7
46 TraesCS5B01G073100 chr4B 100.000 30 0 0 421 450 663462042 663462013 1.000000e-03 56.5
47 TraesCS5B01G073100 chrUn 100.000 29 0 0 450 478 97147224 97147196 3.000000e-03 54.7
48 TraesCS5B01G073100 chr7A 100.000 29 0 0 421 449 78227913 78227941 3.000000e-03 54.7
49 TraesCS5B01G073100 chr6D 100.000 29 0 0 422 450 400616059 400616087 3.000000e-03 54.7
50 TraesCS5B01G073100 chr6D 100.000 28 0 0 451 478 431858478 431858451 1.200000e-02 52.8
51 TraesCS5B01G073100 chr3B 88.636 44 5 0 453 496 512859416 512859373 3.000000e-03 54.7
52 TraesCS5B01G073100 chr6A 100.000 28 0 0 451 478 73783273 73783300 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G073100 chr5B 86544602 86551256 6654 True 12290.0 12290 100.000000 1 6655 1 chr5B.!!$R1 6654
1 TraesCS5B01G073100 chr5B 488118698 488119440 742 False 388.5 531 85.023000 3 818 2 chr5B.!!$F1 815
2 TraesCS5B01G073100 chr5A 74104910 74110827 5917 True 1760.8 4477 93.267200 852 6213 5 chr5A.!!$R2 5361
3 TraesCS5B01G073100 chr5D 77075112 77080961 5849 True 1481.5 4351 93.207667 856 6655 6 chr5D.!!$R5 5799
4 TraesCS5B01G073100 chr5D 33045140 33045879 739 False 386.5 525 84.969000 3 818 2 chr5D.!!$F4 815
5 TraesCS5B01G073100 chr1D 318550885 318551630 745 False 411.5 527 86.398500 3 818 2 chr1D.!!$F3 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
900 921 0.110486 ACGAAGAAGGGCCAACACAT 59.890 50.0 6.18 0.0 0.0 3.21 F
1320 1341 0.105964 TGGCCCGGTTTCTATGATCG 59.894 55.0 0.00 0.0 0.0 3.69 F
2808 2831 1.168714 GACCATGAGACAGGTTTGCC 58.831 55.0 0.00 0.0 38.5 4.52 F
3993 4023 0.178932 ACCACACCAGCCTGAGTCTA 60.179 55.0 0.00 0.0 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1804 1827 6.072728 GCCATCTACATTTCACAACAGTACAA 60.073 38.462 0.00 0.00 0.00 2.41 R
2966 2989 5.003692 TCTCTTTCTCATGAATCCTGACG 57.996 43.478 0.00 0.00 31.56 4.35 R
4454 4510 0.106868 ATATCTGCTGCTGCCTTGCA 60.107 50.000 13.47 10.62 41.05 4.08 R
5853 5994 0.321564 TTGCATGGAGGTTCTCGTGG 60.322 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.334583 TCCTCAGTGGACAAGTATTGC 57.665 47.619 0.00 0.00 42.06 3.56
47 48 4.625324 CGAAGACAATTCCCAACCCTATCA 60.625 45.833 0.00 0.00 0.00 2.15
68 69 9.889128 CTATCAGAGAGAAGAGGAAAAGATTTT 57.111 33.333 0.00 0.00 0.00 1.82
99 100 3.172229 AGAGATTGCTAAGAAGGACGC 57.828 47.619 0.00 0.00 0.00 5.19
197 198 0.392193 GTGGGAGGTGATGACTGCTG 60.392 60.000 0.00 0.00 0.00 4.41
234 235 5.011023 ACAATATGATCGTACAGGATGAGCA 59.989 40.000 0.00 0.00 43.42 4.26
243 244 1.831106 ACAGGATGAGCATACGGAACA 59.169 47.619 0.00 0.00 39.69 3.18
258 259 7.527457 CATACGGAACATATCTACGATCAAGA 58.473 38.462 0.00 0.00 0.00 3.02
272 273 4.212214 ACGATCAAGAGTTTCAGTTTCAGC 59.788 41.667 0.00 0.00 0.00 4.26
290 291 1.001974 AGCGTGAGAATGTTGTGCCTA 59.998 47.619 0.00 0.00 0.00 3.93
389 390 4.060205 GCTGCAAAATGATTTGGTTGAGT 58.940 39.130 0.00 0.00 44.93 3.41
396 397 9.369904 GCAAAATGATTTGGTTGAGTATATGTT 57.630 29.630 0.00 0.00 44.93 2.71
401 402 6.663093 TGATTTGGTTGAGTATATGTTGGCTT 59.337 34.615 0.00 0.00 0.00 4.35
403 404 6.995511 TTGGTTGAGTATATGTTGGCTTAC 57.004 37.500 0.00 0.00 0.00 2.34
425 426 3.938963 CGTTGGCAACCAATAGATGTACT 59.061 43.478 23.68 0.00 45.80 2.73
426 427 4.034048 CGTTGGCAACCAATAGATGTACTC 59.966 45.833 23.68 0.00 45.80 2.59
427 428 4.150897 TGGCAACCAATAGATGTACTCC 57.849 45.455 0.00 0.00 0.00 3.85
428 429 3.118038 TGGCAACCAATAGATGTACTCCC 60.118 47.826 0.00 0.00 0.00 4.30
429 430 3.136626 GGCAACCAATAGATGTACTCCCT 59.863 47.826 0.00 0.00 0.00 4.20
430 431 4.381411 GCAACCAATAGATGTACTCCCTC 58.619 47.826 0.00 0.00 0.00 4.30
431 432 4.743955 GCAACCAATAGATGTACTCCCTCC 60.744 50.000 0.00 0.00 0.00 4.30
432 433 4.280789 ACCAATAGATGTACTCCCTCCA 57.719 45.455 0.00 0.00 0.00 3.86
433 434 4.832492 ACCAATAGATGTACTCCCTCCAT 58.168 43.478 0.00 0.00 0.00 3.41
434 435 4.841246 ACCAATAGATGTACTCCCTCCATC 59.159 45.833 0.00 0.00 36.16 3.51
435 436 4.223923 CCAATAGATGTACTCCCTCCATCC 59.776 50.000 0.00 0.00 36.48 3.51
436 437 2.002505 AGATGTACTCCCTCCATCCG 57.997 55.000 0.00 0.00 36.48 4.18
437 438 1.499438 AGATGTACTCCCTCCATCCGA 59.501 52.381 0.00 0.00 36.48 4.55
438 439 2.091278 AGATGTACTCCCTCCATCCGAA 60.091 50.000 0.00 0.00 36.48 4.30
439 440 2.241281 TGTACTCCCTCCATCCGAAA 57.759 50.000 0.00 0.00 0.00 3.46
440 441 2.542550 TGTACTCCCTCCATCCGAAAA 58.457 47.619 0.00 0.00 0.00 2.29
441 442 2.907696 TGTACTCCCTCCATCCGAAAAA 59.092 45.455 0.00 0.00 0.00 1.94
468 469 8.865090 ACTTGTCCTAGATACATCTATTTGAGG 58.135 37.037 0.00 0.00 38.60 3.86
469 470 7.782897 TGTCCTAGATACATCTATTTGAGGG 57.217 40.000 0.00 0.00 38.60 4.30
470 471 7.535738 TGTCCTAGATACATCTATTTGAGGGA 58.464 38.462 0.00 0.23 38.60 4.20
471 472 7.451877 TGTCCTAGATACATCTATTTGAGGGAC 59.548 40.741 17.81 17.81 42.09 4.46
472 473 7.451877 GTCCTAGATACATCTATTTGAGGGACA 59.548 40.741 18.84 0.00 41.75 4.02
473 474 8.010697 TCCTAGATACATCTATTTGAGGGACAA 58.989 37.037 0.00 0.00 38.60 3.18
474 475 8.651389 CCTAGATACATCTATTTGAGGGACAAA 58.349 37.037 0.00 0.00 43.38 2.83
475 476 9.482627 CTAGATACATCTATTTGAGGGACAAAC 57.517 37.037 0.00 0.00 42.79 2.93
476 477 9.213777 TAGATACATCTATTTGAGGGACAAACT 57.786 33.333 0.00 0.00 42.79 2.66
484 485 3.943671 TGAGGGACAAACTTTTCAGGA 57.056 42.857 0.00 0.00 0.00 3.86
485 486 3.551846 TGAGGGACAAACTTTTCAGGAC 58.448 45.455 0.00 0.00 0.00 3.85
486 487 2.548480 GAGGGACAAACTTTTCAGGACG 59.452 50.000 0.00 0.00 0.00 4.79
487 488 1.607148 GGGACAAACTTTTCAGGACGG 59.393 52.381 0.00 0.00 0.00 4.79
488 489 2.567985 GGACAAACTTTTCAGGACGGA 58.432 47.619 0.00 0.00 0.00 4.69
489 490 2.548480 GGACAAACTTTTCAGGACGGAG 59.452 50.000 0.00 0.00 0.00 4.63
490 491 3.463944 GACAAACTTTTCAGGACGGAGA 58.536 45.455 0.00 0.00 0.00 3.71
491 492 3.467803 ACAAACTTTTCAGGACGGAGAG 58.532 45.455 0.00 0.00 0.00 3.20
492 493 3.134081 ACAAACTTTTCAGGACGGAGAGA 59.866 43.478 0.00 0.00 0.00 3.10
493 494 3.669251 AACTTTTCAGGACGGAGAGAG 57.331 47.619 0.00 0.00 0.00 3.20
494 495 2.599677 ACTTTTCAGGACGGAGAGAGT 58.400 47.619 0.00 0.00 0.00 3.24
495 496 3.764218 ACTTTTCAGGACGGAGAGAGTA 58.236 45.455 0.00 0.00 0.00 2.59
496 497 4.345854 ACTTTTCAGGACGGAGAGAGTAT 58.654 43.478 0.00 0.00 0.00 2.12
581 583 8.986477 ATTTATTTGGTTGTGAAAGTATGCTC 57.014 30.769 0.00 0.00 0.00 4.26
597 599 6.711277 AGTATGCTCTATTTGGTTGTGAGAA 58.289 36.000 0.00 0.00 0.00 2.87
598 600 7.168219 AGTATGCTCTATTTGGTTGTGAGAAA 58.832 34.615 0.00 0.00 0.00 2.52
599 601 7.831193 AGTATGCTCTATTTGGTTGTGAGAAAT 59.169 33.333 0.00 0.00 0.00 2.17
603 605 6.583806 GCTCTATTTGGTTGTGAGAAATTGTG 59.416 38.462 0.00 0.00 0.00 3.33
604 606 6.446318 TCTATTTGGTTGTGAGAAATTGTGC 58.554 36.000 0.00 0.00 0.00 4.57
605 607 4.734398 TTTGGTTGTGAGAAATTGTGCT 57.266 36.364 0.00 0.00 0.00 4.40
606 608 5.843673 TTTGGTTGTGAGAAATTGTGCTA 57.156 34.783 0.00 0.00 0.00 3.49
607 609 6.403866 TTTGGTTGTGAGAAATTGTGCTAT 57.596 33.333 0.00 0.00 0.00 2.97
608 610 6.403866 TTGGTTGTGAGAAATTGTGCTATT 57.596 33.333 0.00 0.00 0.00 1.73
609 611 6.403866 TGGTTGTGAGAAATTGTGCTATTT 57.596 33.333 0.00 0.00 0.00 1.40
610 612 6.815089 TGGTTGTGAGAAATTGTGCTATTTT 58.185 32.000 0.00 0.00 0.00 1.82
678 695 0.986527 ATGATGGTCAGTCAGCCACA 59.013 50.000 0.00 0.00 37.62 4.17
690 707 3.196901 AGTCAGCCACACCGACAAATATA 59.803 43.478 0.00 0.00 31.92 0.86
696 713 4.393680 GCCACACCGACAAATATAAGTCAA 59.606 41.667 7.86 0.00 34.48 3.18
703 720 5.004630 CCGACAAATATAAGTCAACGCGTTA 59.995 40.000 26.11 9.29 34.48 3.18
708 725 2.373540 TAAGTCAACGCGTTAGGCAT 57.626 45.000 26.11 15.37 43.84 4.40
731 748 4.142038 ACTGCCGACCTAAATCAAAAAGT 58.858 39.130 0.00 0.00 0.00 2.66
808 829 0.668096 CCGTTTGGATCGACCGTTGA 60.668 55.000 0.00 0.00 42.61 3.18
818 839 1.202486 TCGACCGTTGAAGTTGCTCTT 60.202 47.619 0.00 0.00 39.32 2.85
819 840 2.034939 TCGACCGTTGAAGTTGCTCTTA 59.965 45.455 0.00 0.00 36.40 2.10
820 841 2.993899 CGACCGTTGAAGTTGCTCTTAT 59.006 45.455 0.00 0.00 36.40 1.73
821 842 3.181530 CGACCGTTGAAGTTGCTCTTATG 60.182 47.826 0.00 0.00 36.40 1.90
822 843 3.074412 ACCGTTGAAGTTGCTCTTATGG 58.926 45.455 0.00 0.00 36.40 2.74
823 844 2.420022 CCGTTGAAGTTGCTCTTATGGG 59.580 50.000 0.00 0.00 36.40 4.00
824 845 2.159517 CGTTGAAGTTGCTCTTATGGGC 60.160 50.000 0.00 0.00 36.40 5.36
825 846 2.819608 GTTGAAGTTGCTCTTATGGGCA 59.180 45.455 0.00 0.00 36.40 5.36
826 847 3.153369 TGAAGTTGCTCTTATGGGCAA 57.847 42.857 11.64 11.64 44.64 4.52
833 854 4.981806 TGCTCTTATGGGCAACAAATAC 57.018 40.909 0.00 0.00 35.40 1.89
834 855 4.339748 TGCTCTTATGGGCAACAAATACA 58.660 39.130 0.00 0.00 35.40 2.29
835 856 4.157656 TGCTCTTATGGGCAACAAATACAC 59.842 41.667 0.00 0.00 35.40 2.90
836 857 4.440112 GCTCTTATGGGCAACAAATACACC 60.440 45.833 0.00 0.00 39.74 4.16
837 858 3.692101 TCTTATGGGCAACAAATACACCG 59.308 43.478 0.00 0.00 39.74 4.94
838 859 1.917872 ATGGGCAACAAATACACCGT 58.082 45.000 0.00 0.00 39.74 4.83
839 860 1.240256 TGGGCAACAAATACACCGTC 58.760 50.000 0.00 0.00 39.74 4.79
840 861 1.202830 TGGGCAACAAATACACCGTCT 60.203 47.619 0.00 0.00 39.74 4.18
841 862 1.199097 GGGCAACAAATACACCGTCTG 59.801 52.381 0.00 0.00 39.74 3.51
842 863 1.877443 GGCAACAAATACACCGTCTGT 59.123 47.619 0.00 0.00 36.82 3.41
843 864 5.445742 GGGCAACAAATACACCGTCTGTG 62.446 52.174 0.00 0.00 45.76 3.66
851 872 3.483587 ACCGTCTGTGAATGCCCT 58.516 55.556 0.00 0.00 0.00 5.19
852 873 2.678786 ACCGTCTGTGAATGCCCTA 58.321 52.632 0.00 0.00 0.00 3.53
853 874 0.981183 ACCGTCTGTGAATGCCCTAA 59.019 50.000 0.00 0.00 0.00 2.69
854 875 1.559682 ACCGTCTGTGAATGCCCTAAT 59.440 47.619 0.00 0.00 0.00 1.73
855 876 2.769663 ACCGTCTGTGAATGCCCTAATA 59.230 45.455 0.00 0.00 0.00 0.98
856 877 3.199071 ACCGTCTGTGAATGCCCTAATAA 59.801 43.478 0.00 0.00 0.00 1.40
857 878 4.196193 CCGTCTGTGAATGCCCTAATAAA 58.804 43.478 0.00 0.00 0.00 1.40
858 879 4.638421 CCGTCTGTGAATGCCCTAATAAAA 59.362 41.667 0.00 0.00 0.00 1.52
872 893 6.405065 GCCCTAATAAAACTCTTAAAACCCCG 60.405 42.308 0.00 0.00 0.00 5.73
874 895 7.362315 CCCTAATAAAACTCTTAAAACCCCGTG 60.362 40.741 0.00 0.00 0.00 4.94
900 921 0.110486 ACGAAGAAGGGCCAACACAT 59.890 50.000 6.18 0.00 0.00 3.21
901 922 1.247567 CGAAGAAGGGCCAACACATT 58.752 50.000 6.18 0.00 0.00 2.71
902 923 1.613437 CGAAGAAGGGCCAACACATTT 59.387 47.619 6.18 0.00 0.00 2.32
903 924 2.035832 CGAAGAAGGGCCAACACATTTT 59.964 45.455 6.18 0.00 0.00 1.82
930 951 1.342819 AGCCAAAACGCCATAAAAGCA 59.657 42.857 0.00 0.00 0.00 3.91
931 952 1.459209 GCCAAAACGCCATAAAAGCAC 59.541 47.619 0.00 0.00 0.00 4.40
961 982 1.786407 AAACCCGGAAACTCCTCCCC 61.786 60.000 0.73 0.00 33.30 4.81
997 1018 1.193462 ACGGTCGACCCAATAACCCA 61.193 55.000 28.52 0.00 0.00 4.51
1305 1326 1.474143 CCTTCTCCTCTCGATTTGGCC 60.474 57.143 0.00 0.00 0.00 5.36
1320 1341 0.105964 TGGCCCGGTTTCTATGATCG 59.894 55.000 0.00 0.00 0.00 3.69
1397 1418 1.671742 GCCTGGGTCTTCGAGTTCA 59.328 57.895 0.00 0.00 0.00 3.18
1444 1467 3.729108 TCTTGGTGGAGATCAGGATTCT 58.271 45.455 0.00 0.00 0.00 2.40
1481 1504 2.852075 AGGAAAGGACCCGTGGCA 60.852 61.111 0.00 0.00 0.00 4.92
1566 1589 4.719273 AGCTCCCTAGTCTTATTTTCTGCT 59.281 41.667 0.00 0.00 0.00 4.24
1736 1759 7.285566 ACACATCATATTGACTTATTGAGGCT 58.714 34.615 0.00 0.00 33.09 4.58
1737 1760 7.228108 ACACATCATATTGACTTATTGAGGCTG 59.772 37.037 0.00 0.00 33.09 4.85
1952 1975 6.480320 GGGATCACATTGAGTATGAACTACAC 59.520 42.308 0.00 0.00 35.56 2.90
2240 2263 4.636249 AGTCTTGTCACTTGGAAGATGAC 58.364 43.478 11.83 11.83 42.54 3.06
2273 2296 9.077885 AGCTCTAGAATTAATTTCAACAAACCA 57.922 29.630 1.43 0.00 36.75 3.67
2368 2391 5.858581 GCCATTTAAGTGCTACTTTTGTCAG 59.141 40.000 6.82 0.00 39.51 3.51
2808 2831 1.168714 GACCATGAGACAGGTTTGCC 58.831 55.000 0.00 0.00 38.50 4.52
3234 3261 7.664082 AGTGTACAGTTTTCAGATCATCTTG 57.336 36.000 0.00 0.00 0.00 3.02
3269 3296 1.616159 TTGTAGCAAGCCCAAACCTC 58.384 50.000 0.00 0.00 0.00 3.85
3504 3532 8.989980 AGAGTGTTTGAAAATAAGTAGTACTGC 58.010 33.333 5.39 3.75 0.00 4.40
3505 3533 8.671384 AGTGTTTGAAAATAAGTAGTACTGCA 57.329 30.769 13.75 0.00 0.00 4.41
3506 3534 9.284968 AGTGTTTGAAAATAAGTAGTACTGCAT 57.715 29.630 13.75 3.71 0.00 3.96
3519 3547 8.613060 AGTAGTACTGCATATGATTGATTTGG 57.387 34.615 13.75 0.00 0.00 3.28
3520 3548 8.432013 AGTAGTACTGCATATGATTGATTTGGA 58.568 33.333 13.75 0.00 0.00 3.53
3521 3549 9.056005 GTAGTACTGCATATGATTGATTTGGAA 57.944 33.333 6.97 0.00 0.00 3.53
3522 3550 8.162878 AGTACTGCATATGATTGATTTGGAAG 57.837 34.615 6.97 0.00 0.00 3.46
3523 3551 7.776969 AGTACTGCATATGATTGATTTGGAAGT 59.223 33.333 6.97 0.00 0.00 3.01
3524 3552 7.035840 ACTGCATATGATTGATTTGGAAGTC 57.964 36.000 6.97 0.00 0.00 3.01
3525 3553 6.604396 ACTGCATATGATTGATTTGGAAGTCA 59.396 34.615 6.97 0.00 0.00 3.41
3526 3554 7.123098 ACTGCATATGATTGATTTGGAAGTCAA 59.877 33.333 6.97 0.43 38.57 3.18
3528 3556 7.760794 TGCATATGATTGATTTGGAAGTCAAAC 59.239 33.333 6.97 0.84 46.72 2.93
3529 3557 7.977853 GCATATGATTGATTTGGAAGTCAAACT 59.022 33.333 6.97 0.00 46.72 2.66
3530 3558 9.865321 CATATGATTGATTTGGAAGTCAAACTT 57.135 29.630 0.00 0.00 46.72 2.66
3534 3562 9.695526 TGATTGATTTGGAAGTCAAACTTATTG 57.304 29.630 1.94 0.00 46.72 1.90
3535 3563 9.143631 GATTGATTTGGAAGTCAAACTTATTGG 57.856 33.333 1.94 0.00 46.72 3.16
3536 3564 7.831691 TGATTTGGAAGTCAAACTTATTGGA 57.168 32.000 0.00 0.00 46.72 3.53
3537 3565 8.421249 TGATTTGGAAGTCAAACTTATTGGAT 57.579 30.769 0.00 0.00 46.72 3.41
3538 3566 8.869109 TGATTTGGAAGTCAAACTTATTGGATT 58.131 29.630 0.00 0.00 46.72 3.01
3539 3567 9.710900 GATTTGGAAGTCAAACTTATTGGATTT 57.289 29.630 0.00 0.00 46.72 2.17
3541 3569 9.898152 TTTGGAAGTCAAACTTATTGGATTTTT 57.102 25.926 0.00 0.00 38.80 1.94
3542 3570 8.885494 TGGAAGTCAAACTTATTGGATTTTTG 57.115 30.769 0.00 0.00 38.80 2.44
3543 3571 7.930865 TGGAAGTCAAACTTATTGGATTTTTGG 59.069 33.333 0.00 0.00 38.80 3.28
3544 3572 8.147704 GGAAGTCAAACTTATTGGATTTTTGGA 58.852 33.333 0.00 0.00 38.80 3.53
3545 3573 9.196552 GAAGTCAAACTTATTGGATTTTTGGAG 57.803 33.333 0.00 0.00 38.80 3.86
3546 3574 7.670364 AGTCAAACTTATTGGATTTTTGGAGG 58.330 34.615 0.00 0.00 0.00 4.30
3547 3575 7.290014 AGTCAAACTTATTGGATTTTTGGAGGT 59.710 33.333 0.00 0.00 0.00 3.85
3548 3576 7.598869 GTCAAACTTATTGGATTTTTGGAGGTC 59.401 37.037 0.00 0.00 0.00 3.85
3549 3577 7.508977 TCAAACTTATTGGATTTTTGGAGGTCT 59.491 33.333 0.00 0.00 0.00 3.85
3550 3578 7.468141 AACTTATTGGATTTTTGGAGGTCTC 57.532 36.000 0.00 0.00 0.00 3.36
3551 3579 6.552008 ACTTATTGGATTTTTGGAGGTCTCA 58.448 36.000 0.14 0.00 0.00 3.27
3552 3580 6.660949 ACTTATTGGATTTTTGGAGGTCTCAG 59.339 38.462 0.14 0.00 0.00 3.35
3553 3581 2.795329 TGGATTTTTGGAGGTCTCAGC 58.205 47.619 0.14 0.00 0.00 4.26
3554 3582 2.376518 TGGATTTTTGGAGGTCTCAGCT 59.623 45.455 0.14 0.00 0.00 4.24
3555 3583 3.587061 TGGATTTTTGGAGGTCTCAGCTA 59.413 43.478 0.14 0.00 0.00 3.32
3556 3584 4.228210 TGGATTTTTGGAGGTCTCAGCTAT 59.772 41.667 0.14 0.00 0.00 2.97
3557 3585 5.196695 GGATTTTTGGAGGTCTCAGCTATT 58.803 41.667 0.14 0.00 0.00 1.73
3558 3586 5.067023 GGATTTTTGGAGGTCTCAGCTATTG 59.933 44.000 0.14 0.00 0.00 1.90
3559 3587 4.908601 TTTTGGAGGTCTCAGCTATTGA 57.091 40.909 0.14 0.00 0.00 2.57
3560 3588 5.441718 TTTTGGAGGTCTCAGCTATTGAT 57.558 39.130 0.14 0.00 34.68 2.57
3561 3589 5.441718 TTTGGAGGTCTCAGCTATTGATT 57.558 39.130 0.14 0.00 34.68 2.57
3562 3590 6.560003 TTTGGAGGTCTCAGCTATTGATTA 57.440 37.500 0.14 0.00 34.68 1.75
3563 3591 6.753913 TTGGAGGTCTCAGCTATTGATTAT 57.246 37.500 0.14 0.00 34.68 1.28
3564 3592 6.106648 TGGAGGTCTCAGCTATTGATTATG 57.893 41.667 0.14 0.00 34.68 1.90
3565 3593 5.840693 TGGAGGTCTCAGCTATTGATTATGA 59.159 40.000 0.14 0.00 34.68 2.15
3566 3594 6.162777 GGAGGTCTCAGCTATTGATTATGAC 58.837 44.000 0.14 0.00 34.68 3.06
3567 3595 6.014669 GGAGGTCTCAGCTATTGATTATGACT 60.015 42.308 0.14 0.00 34.68 3.41
3568 3596 7.177568 GGAGGTCTCAGCTATTGATTATGACTA 59.822 40.741 0.14 0.00 34.68 2.59
3569 3597 8.484214 AGGTCTCAGCTATTGATTATGACTAA 57.516 34.615 0.00 0.00 34.68 2.24
3570 3598 8.928448 AGGTCTCAGCTATTGATTATGACTAAA 58.072 33.333 0.00 0.00 34.68 1.85
3571 3599 9.717942 GGTCTCAGCTATTGATTATGACTAAAT 57.282 33.333 0.00 0.00 34.68 1.40
3634 3662 9.944376 AGTAGTACTACATGACAATGACAAAAT 57.056 29.630 29.87 4.99 38.48 1.82
3684 3712 8.986477 AATGTTTGAGTCCTTTATATGTTTGC 57.014 30.769 0.00 0.00 0.00 3.68
3686 3714 7.592938 TGTTTGAGTCCTTTATATGTTTGCAG 58.407 34.615 0.00 0.00 0.00 4.41
3799 3827 4.691860 AAGTGCTCAGACATTTACATGC 57.308 40.909 0.00 0.00 33.05 4.06
3862 3890 2.734948 TTTACCCGGGTGCACCTTCG 62.735 60.000 36.97 27.96 36.97 3.79
3903 3931 4.091509 CGGGTTCGACTGAAAACTGAATAG 59.908 45.833 0.00 0.00 39.00 1.73
3993 4023 0.178932 ACCACACCAGCCTGAGTCTA 60.179 55.000 0.00 0.00 0.00 2.59
4003 4033 3.862267 CAGCCTGAGTCTATCTTTCGTTG 59.138 47.826 0.00 0.00 0.00 4.10
4025 4055 2.741145 AGATCTGCTTCGACCCTAAGT 58.259 47.619 0.00 0.00 0.00 2.24
4089 4119 1.519719 CAGCAGTAGTGAGGAGCCC 59.480 63.158 0.42 0.00 0.00 5.19
4348 4401 7.492344 GCTTACTATTGGATGTTGGGAATTTTG 59.508 37.037 0.00 0.00 0.00 2.44
4536 4592 1.937350 TCCTCTATCAGGGTCCTTCCA 59.063 52.381 0.00 0.00 43.67 3.53
4550 4606 1.205417 CCTTCCATCCAACATGGCAAC 59.795 52.381 0.00 0.00 37.47 4.17
4754 4810 3.923017 AAAACTGTCAGCATACTTGGC 57.077 42.857 0.00 0.00 0.00 4.52
4787 4843 3.328931 GCCTTCATTATGGAGGATCAGGA 59.671 47.826 23.04 0.00 36.25 3.86
4874 4930 1.171308 CCCTCAAACATGAGCACCAG 58.829 55.000 0.00 0.00 34.74 4.00
4937 4993 4.533815 ACAGAGTGCATTCCATTGATCAT 58.466 39.130 5.47 0.00 0.00 2.45
4966 5100 0.107703 CCTTGCCTTCAGTATGCGGA 60.108 55.000 0.00 0.00 34.76 5.54
5042 5176 3.583882 AAATCCACCACAGCCCCCG 62.584 63.158 0.00 0.00 0.00 5.73
5106 5240 4.048970 AGAACTTACAGAGTAGAGCCCA 57.951 45.455 0.00 0.00 37.72 5.36
5137 5271 7.711772 TCGTCGGAATAACAATTACCATAACAT 59.288 33.333 0.00 0.00 0.00 2.71
5164 5298 1.338960 TGACGAATCAGCATTCCAGCA 60.339 47.619 0.00 0.00 35.81 4.41
5319 5453 0.874175 TCGCGATCATAGGCAAACGG 60.874 55.000 3.71 0.00 0.00 4.44
5371 5505 3.353370 TCATCACAATCAGCATGGTCA 57.647 42.857 0.00 0.00 36.16 4.02
5434 5568 3.111853 TCATCAGAATGGGCACGATAC 57.888 47.619 0.00 0.00 36.16 2.24
5444 5578 1.968493 GGGCACGATACCTGGAGAATA 59.032 52.381 0.00 0.00 0.00 1.75
5450 5584 4.809426 CACGATACCTGGAGAATAAACCAC 59.191 45.833 0.00 0.00 32.44 4.16
5492 5626 3.117246 AGAACCATCATCAGAATGGGCAT 60.117 43.478 6.15 0.00 39.68 4.40
5701 5835 5.528690 TCACTTGAGAATTTGAAGGTGACAG 59.471 40.000 0.00 0.00 0.00 3.51
5932 6076 9.556030 GCAATATACCTTGTCAGTTCTTTTAAC 57.444 33.333 0.00 0.00 0.00 2.01
6043 6187 1.183549 CGTGTACTAGAAGCTGGGGT 58.816 55.000 0.00 0.00 0.00 4.95
6084 6228 5.621197 TGTACCTGTTCATGTGCATTAAC 57.379 39.130 0.00 3.13 0.00 2.01
6110 6347 0.984995 GTCTGAACCCCTTACCTGCT 59.015 55.000 0.00 0.00 0.00 4.24
6139 6376 9.268268 TCAAATAACACGTCACTTTATCTTCTT 57.732 29.630 0.00 0.00 0.00 2.52
6142 6379 8.827177 ATAACACGTCACTTTATCTTCTTTCA 57.173 30.769 0.00 0.00 0.00 2.69
6145 6382 8.154649 ACACGTCACTTTATCTTCTTTCATTT 57.845 30.769 0.00 0.00 0.00 2.32
6172 7068 5.817784 TCTCTTAGTGTCAAGCTACCTAGT 58.182 41.667 0.00 0.00 0.00 2.57
6221 7248 8.869897 ACATAGAACAACAAGATATACAACACG 58.130 33.333 0.00 0.00 0.00 4.49
6224 7251 7.103641 AGAACAACAAGATATACAACACGGAT 58.896 34.615 0.00 0.00 0.00 4.18
6230 7257 6.876789 ACAAGATATACAACACGGATCACAAA 59.123 34.615 0.00 0.00 0.00 2.83
6238 7265 6.337356 ACAACACGGATCACAAAAGATTTTT 58.663 32.000 0.00 0.00 0.00 1.94
6270 7297 5.524284 TCAATTAGATAGCAGACGAAGAGC 58.476 41.667 0.00 0.00 0.00 4.09
6273 7300 2.374184 AGATAGCAGACGAAGAGCAGT 58.626 47.619 0.00 0.00 0.00 4.40
6289 7316 7.201393 CGAAGAGCAGTATCAACTTGAAACTAG 60.201 40.741 0.00 0.00 31.97 2.57
6294 7321 6.538742 GCAGTATCAACTTGAAACTAGGCATA 59.461 38.462 0.00 0.00 31.97 3.14
6297 7324 9.113838 AGTATCAACTTGAAACTAGGCATATTG 57.886 33.333 0.00 0.00 29.00 1.90
6300 7327 8.177119 TCAACTTGAAACTAGGCATATTGTTT 57.823 30.769 0.00 0.00 35.64 2.83
6301 7328 8.081633 TCAACTTGAAACTAGGCATATTGTTTG 58.918 33.333 1.09 0.00 33.49 2.93
6302 7329 7.524717 ACTTGAAACTAGGCATATTGTTTGT 57.475 32.000 1.09 0.00 33.49 2.83
6303 7330 7.951591 ACTTGAAACTAGGCATATTGTTTGTT 58.048 30.769 1.09 0.00 33.49 2.83
6304 7331 8.421002 ACTTGAAACTAGGCATATTGTTTGTTT 58.579 29.630 1.09 0.00 33.49 2.83
6305 7332 8.586570 TTGAAACTAGGCATATTGTTTGTTTG 57.413 30.769 1.09 0.00 33.49 2.93
6306 7333 7.721402 TGAAACTAGGCATATTGTTTGTTTGT 58.279 30.769 1.09 0.00 33.49 2.83
6307 7334 8.200792 TGAAACTAGGCATATTGTTTGTTTGTT 58.799 29.630 1.09 0.00 33.49 2.83
6308 7335 8.956533 AAACTAGGCATATTGTTTGTTTGTTT 57.043 26.923 0.00 0.00 32.32 2.83
6309 7336 8.956533 AACTAGGCATATTGTTTGTTTGTTTT 57.043 26.923 0.00 0.00 0.00 2.43
6310 7337 8.364129 ACTAGGCATATTGTTTGTTTGTTTTG 57.636 30.769 0.00 0.00 0.00 2.44
6311 7338 6.058827 AGGCATATTGTTTGTTTGTTTTGC 57.941 33.333 0.00 0.00 0.00 3.68
6312 7339 5.587844 AGGCATATTGTTTGTTTGTTTTGCA 59.412 32.000 0.00 0.00 0.00 4.08
6313 7340 6.262720 AGGCATATTGTTTGTTTGTTTTGCAT 59.737 30.769 0.00 0.00 0.00 3.96
6314 7341 7.443575 AGGCATATTGTTTGTTTGTTTTGCATA 59.556 29.630 0.00 0.00 0.00 3.14
6315 7342 8.235905 GGCATATTGTTTGTTTGTTTTGCATAT 58.764 29.630 0.00 0.00 0.00 1.78
6316 7343 9.053135 GCATATTGTTTGTTTGTTTTGCATATG 57.947 29.630 0.00 0.00 0.00 1.78
6414 7441 7.923414 ATGACACTAAAAGGTAATCAACTCC 57.077 36.000 0.00 0.00 0.00 3.85
6424 7451 1.327303 AATCAACTCCGGCAAGCAAA 58.673 45.000 0.00 0.00 0.00 3.68
6425 7452 1.327303 ATCAACTCCGGCAAGCAAAA 58.673 45.000 0.00 0.00 0.00 2.44
6479 7510 4.460731 AGTTGAGGGAAAGCTCTAAATTGC 59.539 41.667 0.00 0.00 0.00 3.56
6480 7511 4.032960 TGAGGGAAAGCTCTAAATTGCA 57.967 40.909 0.00 0.00 0.00 4.08
6521 7552 7.510549 TGTCCCAATAAGCTATCTTTAATGC 57.489 36.000 0.00 0.00 33.85 3.56
6533 7564 5.921962 ATCTTTAATGCTTTGGTCCCTTC 57.078 39.130 0.00 0.00 0.00 3.46
6564 7595 2.907634 TGTTCGTTTAGGTTGTGCTCA 58.092 42.857 0.00 0.00 0.00 4.26
6565 7596 2.610374 TGTTCGTTTAGGTTGTGCTCAC 59.390 45.455 0.00 0.00 0.00 3.51
6584 7615 5.680619 CTCACCATAGTTACATTTAGGCCA 58.319 41.667 5.01 0.00 0.00 5.36
6617 7648 3.876914 TCCGCATAGCCTAAATTGTCAAG 59.123 43.478 0.00 0.00 0.00 3.02
6621 7655 6.321717 CGCATAGCCTAAATTGTCAAGAAAA 58.678 36.000 0.00 0.00 0.00 2.29
6623 7657 7.008628 CGCATAGCCTAAATTGTCAAGAAAAAG 59.991 37.037 0.00 0.00 0.00 2.27
6642 7676 9.442047 AGAAAAAGATAATGTGTAGAAGACCTG 57.558 33.333 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 4.331968 TGGGAATTGTCTTCGCAATACTT 58.668 39.130 2.67 0.00 38.03 2.24
18 19 4.695217 TTGGGAATTGTCTTCGCAATAC 57.305 40.909 11.84 0.00 43.37 1.89
24 25 2.200373 AGGGTTGGGAATTGTCTTCG 57.800 50.000 0.00 0.00 0.00 3.79
34 35 3.272285 TCTTCTCTCTGATAGGGTTGGGA 59.728 47.826 0.00 0.00 0.00 4.37
99 100 3.726517 CACCAAAGGCACGCTCGG 61.727 66.667 0.00 0.00 0.00 4.63
166 167 1.263356 CCTCCCACGACTTCTTGGTA 58.737 55.000 1.44 0.00 33.82 3.25
177 178 1.448540 GCAGTCATCACCTCCCACG 60.449 63.158 0.00 0.00 0.00 4.94
197 198 5.700722 ATCATATTGTGCATGATCACACC 57.299 39.130 12.48 0.00 45.58 4.16
224 225 2.602257 TGTTCCGTATGCTCATCCTG 57.398 50.000 0.00 0.00 0.00 3.86
234 235 7.390996 ACTCTTGATCGTAGATATGTTCCGTAT 59.609 37.037 0.00 0.00 45.12 3.06
236 237 5.531659 ACTCTTGATCGTAGATATGTTCCGT 59.468 40.000 0.00 0.00 45.12 4.69
243 244 9.522804 GAAACTGAAACTCTTGATCGTAGATAT 57.477 33.333 0.00 0.00 45.12 1.63
258 259 3.179443 TCTCACGCTGAAACTGAAACT 57.821 42.857 0.00 0.00 0.00 2.66
272 273 2.159653 GCTTAGGCACAACATTCTCACG 60.160 50.000 0.00 0.00 38.54 4.35
290 291 3.272364 TTGCCGCTCCTCCATGCTT 62.272 57.895 0.00 0.00 0.00 3.91
342 343 4.481463 CACGTGAGTTTTTCAACCACTTT 58.519 39.130 10.90 0.00 46.40 2.66
343 344 3.672241 GCACGTGAGTTTTTCAACCACTT 60.672 43.478 22.23 0.00 46.40 3.16
344 345 2.159435 GCACGTGAGTTTTTCAACCACT 60.159 45.455 22.23 0.00 46.40 4.00
348 349 1.846175 GCTGCACGTGAGTTTTTCAAC 59.154 47.619 22.23 0.00 46.40 3.18
352 353 0.248621 GCAGCTGCACGTGAGTTTTT 60.249 50.000 33.36 0.00 46.40 1.94
389 390 3.875125 TGCCAACGTAAGCCAACATATA 58.125 40.909 7.21 0.00 45.62 0.86
396 397 0.752009 TTGGTTGCCAACGTAAGCCA 60.752 50.000 0.74 0.36 38.75 4.75
401 402 3.945346 ACATCTATTGGTTGCCAACGTA 58.055 40.909 0.74 0.00 46.95 3.57
403 404 3.938963 AGTACATCTATTGGTTGCCAACG 59.061 43.478 0.74 0.00 46.95 4.10
442 443 8.865090 CCTCAAATAGATGTATCTAGGACAAGT 58.135 37.037 7.57 0.00 42.20 3.16
443 444 8.310382 CCCTCAAATAGATGTATCTAGGACAAG 58.690 40.741 7.57 2.53 42.20 3.16
444 445 8.010697 TCCCTCAAATAGATGTATCTAGGACAA 58.989 37.037 7.57 0.00 42.20 3.18
445 446 7.451877 GTCCCTCAAATAGATGTATCTAGGACA 59.548 40.741 20.04 1.51 41.75 4.02
446 447 7.451877 TGTCCCTCAAATAGATGTATCTAGGAC 59.548 40.741 19.05 19.05 42.09 3.85
447 448 7.535738 TGTCCCTCAAATAGATGTATCTAGGA 58.464 38.462 7.57 4.96 42.20 2.94
448 449 7.782897 TGTCCCTCAAATAGATGTATCTAGG 57.217 40.000 7.57 4.68 42.20 3.02
449 450 9.482627 GTTTGTCCCTCAAATAGATGTATCTAG 57.517 37.037 7.57 0.00 45.88 2.43
450 451 9.213777 AGTTTGTCCCTCAAATAGATGTATCTA 57.786 33.333 4.22 4.22 45.88 1.98
451 452 8.095452 AGTTTGTCCCTCAAATAGATGTATCT 57.905 34.615 0.00 0.00 45.88 1.98
452 453 8.738645 AAGTTTGTCCCTCAAATAGATGTATC 57.261 34.615 0.00 0.00 45.88 2.24
453 454 9.533831 AAAAGTTTGTCCCTCAAATAGATGTAT 57.466 29.630 0.00 0.00 45.88 2.29
454 455 8.934023 AAAAGTTTGTCCCTCAAATAGATGTA 57.066 30.769 0.00 0.00 45.88 2.29
455 456 7.505585 TGAAAAGTTTGTCCCTCAAATAGATGT 59.494 33.333 0.00 0.00 45.88 3.06
456 457 7.885297 TGAAAAGTTTGTCCCTCAAATAGATG 58.115 34.615 0.00 0.00 45.88 2.90
457 458 7.177392 CCTGAAAAGTTTGTCCCTCAAATAGAT 59.823 37.037 0.00 0.00 45.88 1.98
458 459 6.490040 CCTGAAAAGTTTGTCCCTCAAATAGA 59.510 38.462 0.00 0.00 45.88 1.98
459 460 6.490040 TCCTGAAAAGTTTGTCCCTCAAATAG 59.510 38.462 0.00 0.00 45.88 1.73
460 461 6.264518 GTCCTGAAAAGTTTGTCCCTCAAATA 59.735 38.462 0.00 0.00 45.88 1.40
461 462 5.069119 GTCCTGAAAAGTTTGTCCCTCAAAT 59.931 40.000 0.00 0.00 45.88 2.32
462 463 4.401202 GTCCTGAAAAGTTTGTCCCTCAAA 59.599 41.667 0.00 0.00 42.79 2.69
463 464 3.951680 GTCCTGAAAAGTTTGTCCCTCAA 59.048 43.478 0.00 0.00 0.00 3.02
464 465 3.551846 GTCCTGAAAAGTTTGTCCCTCA 58.448 45.455 0.00 0.00 0.00 3.86
465 466 2.548480 CGTCCTGAAAAGTTTGTCCCTC 59.452 50.000 0.00 0.00 0.00 4.30
466 467 2.572290 CGTCCTGAAAAGTTTGTCCCT 58.428 47.619 0.00 0.00 0.00 4.20
467 468 1.607148 CCGTCCTGAAAAGTTTGTCCC 59.393 52.381 0.00 0.00 0.00 4.46
468 469 2.548480 CTCCGTCCTGAAAAGTTTGTCC 59.452 50.000 0.00 0.00 0.00 4.02
469 470 3.463944 TCTCCGTCCTGAAAAGTTTGTC 58.536 45.455 0.00 0.00 0.00 3.18
470 471 3.134081 TCTCTCCGTCCTGAAAAGTTTGT 59.866 43.478 0.00 0.00 0.00 2.83
471 472 3.728845 TCTCTCCGTCCTGAAAAGTTTG 58.271 45.455 0.00 0.00 0.00 2.93
472 473 3.388350 ACTCTCTCCGTCCTGAAAAGTTT 59.612 43.478 0.00 0.00 0.00 2.66
473 474 2.966516 ACTCTCTCCGTCCTGAAAAGTT 59.033 45.455 0.00 0.00 0.00 2.66
474 475 2.599677 ACTCTCTCCGTCCTGAAAAGT 58.400 47.619 0.00 0.00 0.00 2.66
475 476 4.642885 AGATACTCTCTCCGTCCTGAAAAG 59.357 45.833 0.00 0.00 0.00 2.27
476 477 4.601084 AGATACTCTCTCCGTCCTGAAAA 58.399 43.478 0.00 0.00 0.00 2.29
477 478 4.237976 AGATACTCTCTCCGTCCTGAAA 57.762 45.455 0.00 0.00 0.00 2.69
478 479 3.935818 AGATACTCTCTCCGTCCTGAA 57.064 47.619 0.00 0.00 0.00 3.02
479 480 3.935818 AAGATACTCTCTCCGTCCTGA 57.064 47.619 0.00 0.00 31.03 3.86
480 481 4.993029 AAAAGATACTCTCTCCGTCCTG 57.007 45.455 0.00 0.00 31.03 3.86
574 576 6.985188 TTCTCACAACCAAATAGAGCATAC 57.015 37.500 0.00 0.00 0.00 2.39
581 583 6.449698 AGCACAATTTCTCACAACCAAATAG 58.550 36.000 0.00 0.00 0.00 1.73
651 667 6.211184 TGGCTGACTGACCATCATTTTTAAAT 59.789 34.615 0.00 0.00 0.00 1.40
654 670 4.458989 GTGGCTGACTGACCATCATTTTTA 59.541 41.667 0.00 0.00 38.46 1.52
660 677 0.035317 GTGTGGCTGACTGACCATCA 59.965 55.000 0.00 0.00 38.46 3.07
670 687 2.779755 ATATTTGTCGGTGTGGCTGA 57.220 45.000 0.00 0.00 0.00 4.26
672 689 4.189231 GACTTATATTTGTCGGTGTGGCT 58.811 43.478 0.00 0.00 0.00 4.75
678 695 3.305094 CGCGTTGACTTATATTTGTCGGT 59.695 43.478 0.00 0.00 36.10 4.69
690 707 1.997606 GTATGCCTAACGCGTTGACTT 59.002 47.619 33.40 20.55 42.08 3.01
708 725 5.180492 CACTTTTTGATTTAGGTCGGCAGTA 59.820 40.000 0.00 0.00 0.00 2.74
719 736 2.350964 GGCGTCCGCACTTTTTGATTTA 60.351 45.455 14.19 0.00 44.11 1.40
748 767 0.183014 TTGTCCGTTTAGGTTGGCCA 59.817 50.000 0.00 0.00 41.99 5.36
772 791 4.561735 AACGGACGATGATTTTGTTTGT 57.438 36.364 0.00 0.00 0.00 2.83
773 792 4.148000 CCAAACGGACGATGATTTTGTTTG 59.852 41.667 0.00 7.69 42.44 2.93
774 793 4.036971 TCCAAACGGACGATGATTTTGTTT 59.963 37.500 0.00 0.00 0.00 2.83
784 804 0.179119 GGTCGATCCAAACGGACGAT 60.179 55.000 0.00 0.00 37.93 3.73
801 821 3.074412 CCATAAGAGCAACTTCAACGGT 58.926 45.455 0.00 0.00 39.72 4.83
818 839 3.011119 GACGGTGTATTTGTTGCCCATA 58.989 45.455 0.00 0.00 0.00 2.74
819 840 1.816224 GACGGTGTATTTGTTGCCCAT 59.184 47.619 0.00 0.00 0.00 4.00
820 841 1.202830 AGACGGTGTATTTGTTGCCCA 60.203 47.619 0.00 0.00 0.00 5.36
821 842 1.199097 CAGACGGTGTATTTGTTGCCC 59.801 52.381 0.00 0.00 0.00 5.36
822 843 1.877443 ACAGACGGTGTATTTGTTGCC 59.123 47.619 0.00 0.00 37.75 4.52
823 844 2.916111 CACAGACGGTGTATTTGTTGC 58.084 47.619 0.00 0.00 42.75 4.17
834 855 0.981183 TTAGGGCATTCACAGACGGT 59.019 50.000 0.00 0.00 0.00 4.83
835 856 2.332063 ATTAGGGCATTCACAGACGG 57.668 50.000 0.00 0.00 0.00 4.79
836 857 5.354234 AGTTTTATTAGGGCATTCACAGACG 59.646 40.000 0.00 0.00 0.00 4.18
837 858 6.599638 AGAGTTTTATTAGGGCATTCACAGAC 59.400 38.462 0.00 0.00 0.00 3.51
838 859 6.721318 AGAGTTTTATTAGGGCATTCACAGA 58.279 36.000 0.00 0.00 0.00 3.41
839 860 7.396540 AAGAGTTTTATTAGGGCATTCACAG 57.603 36.000 0.00 0.00 0.00 3.66
840 861 8.871629 TTAAGAGTTTTATTAGGGCATTCACA 57.128 30.769 0.00 0.00 0.00 3.58
843 864 9.582431 GGTTTTAAGAGTTTTATTAGGGCATTC 57.418 33.333 0.00 0.00 0.00 2.67
844 865 8.537016 GGGTTTTAAGAGTTTTATTAGGGCATT 58.463 33.333 0.00 0.00 0.00 3.56
845 866 7.125204 GGGGTTTTAAGAGTTTTATTAGGGCAT 59.875 37.037 0.00 0.00 0.00 4.40
846 867 6.438108 GGGGTTTTAAGAGTTTTATTAGGGCA 59.562 38.462 0.00 0.00 0.00 5.36
847 868 6.405065 CGGGGTTTTAAGAGTTTTATTAGGGC 60.405 42.308 0.00 0.00 0.00 5.19
848 869 6.660521 ACGGGGTTTTAAGAGTTTTATTAGGG 59.339 38.462 0.00 0.00 0.00 3.53
849 870 7.362315 CCACGGGGTTTTAAGAGTTTTATTAGG 60.362 40.741 0.00 0.00 0.00 2.69
850 871 7.532571 CCACGGGGTTTTAAGAGTTTTATTAG 58.467 38.462 0.00 0.00 0.00 1.73
851 872 6.072008 GCCACGGGGTTTTAAGAGTTTTATTA 60.072 38.462 5.12 0.00 36.17 0.98
852 873 5.279106 GCCACGGGGTTTTAAGAGTTTTATT 60.279 40.000 5.12 0.00 36.17 1.40
853 874 4.219070 GCCACGGGGTTTTAAGAGTTTTAT 59.781 41.667 5.12 0.00 36.17 1.40
854 875 3.569277 GCCACGGGGTTTTAAGAGTTTTA 59.431 43.478 5.12 0.00 36.17 1.52
855 876 2.363038 GCCACGGGGTTTTAAGAGTTTT 59.637 45.455 5.12 0.00 36.17 2.43
856 877 1.958579 GCCACGGGGTTTTAAGAGTTT 59.041 47.619 5.12 0.00 36.17 2.66
857 878 1.612676 GCCACGGGGTTTTAAGAGTT 58.387 50.000 5.12 0.00 36.17 3.01
858 879 0.251033 GGCCACGGGGTTTTAAGAGT 60.251 55.000 5.12 0.00 36.17 3.24
872 893 1.966451 CCTTCTTCGTGTGGGCCAC 60.966 63.158 29.75 29.75 40.89 5.01
874 895 2.359975 CCCTTCTTCGTGTGGGCC 60.360 66.667 0.00 0.00 32.49 5.80
903 924 2.386661 TGGCGTTTTGGCTTGAAAAA 57.613 40.000 0.00 0.00 45.14 1.94
909 930 2.224161 TGCTTTTATGGCGTTTTGGCTT 60.224 40.909 0.00 0.00 45.14 4.35
919 940 4.094294 TGAGTATTCGTGTGCTTTTATGGC 59.906 41.667 0.00 0.00 0.00 4.40
930 951 1.619827 TCCGGGTTTGAGTATTCGTGT 59.380 47.619 0.00 0.00 0.00 4.49
931 952 2.373540 TCCGGGTTTGAGTATTCGTG 57.626 50.000 0.00 0.00 0.00 4.35
961 982 0.460284 CGTTGGGGATGGAACGAGAG 60.460 60.000 0.00 0.00 46.19 3.20
1109 1130 2.025767 CTCAGCCTCCGACCCATCAG 62.026 65.000 0.00 0.00 0.00 2.90
1305 1326 1.217882 GTGGCGATCATAGAAACCGG 58.782 55.000 0.00 0.00 0.00 5.28
1320 1341 0.869730 ATTTCCGTGTACGTTGTGGC 59.130 50.000 0.00 0.00 37.74 5.01
1481 1504 7.736691 TCAATATCCTCATTTCCCATCTCTAGT 59.263 37.037 0.00 0.00 0.00 2.57
1626 1649 1.324435 CGGTACACATTGCTCATGTCG 59.676 52.381 0.00 0.00 43.17 4.35
1736 1759 9.733556 ATTAACAGTTATGTTCATCTTGGTACA 57.266 29.630 0.00 0.00 46.90 2.90
1804 1827 6.072728 GCCATCTACATTTCACAACAGTACAA 60.073 38.462 0.00 0.00 0.00 2.41
2055 2078 6.989169 CCAAACAATTTGACCCTGAATGTTTA 59.011 34.615 2.79 0.00 43.26 2.01
2808 2831 6.595716 CCACTGAAAATGAACCTTACTAGAGG 59.404 42.308 0.00 0.00 42.75 3.69
2966 2989 5.003692 TCTCTTTCTCATGAATCCTGACG 57.996 43.478 0.00 0.00 31.56 4.35
3234 3261 6.569179 TGCTACAAATTCCAAACTTAGGAC 57.431 37.500 0.00 0.00 34.19 3.85
3334 3361 6.361748 GCAGAATCTCAAAAGTGTGTCATTTC 59.638 38.462 0.00 0.00 0.00 2.17
3478 3506 8.989980 GCAGTACTACTTATTTTCAAACACTCT 58.010 33.333 0.00 0.00 0.00 3.24
3479 3507 8.770828 TGCAGTACTACTTATTTTCAAACACTC 58.229 33.333 0.00 0.00 0.00 3.51
3480 3508 8.671384 TGCAGTACTACTTATTTTCAAACACT 57.329 30.769 0.00 0.00 0.00 3.55
3493 3521 9.060347 CCAAATCAATCATATGCAGTACTACTT 57.940 33.333 0.00 0.00 0.00 2.24
3494 3522 8.432013 TCCAAATCAATCATATGCAGTACTACT 58.568 33.333 0.00 0.00 0.00 2.57
3495 3523 8.607441 TCCAAATCAATCATATGCAGTACTAC 57.393 34.615 0.00 0.00 0.00 2.73
3496 3524 9.276590 CTTCCAAATCAATCATATGCAGTACTA 57.723 33.333 0.00 0.00 0.00 1.82
3497 3525 7.776969 ACTTCCAAATCAATCATATGCAGTACT 59.223 33.333 0.00 0.00 0.00 2.73
3498 3526 7.934457 ACTTCCAAATCAATCATATGCAGTAC 58.066 34.615 0.00 0.00 0.00 2.73
3499 3527 7.774625 TGACTTCCAAATCAATCATATGCAGTA 59.225 33.333 0.00 0.00 0.00 2.74
3500 3528 6.604396 TGACTTCCAAATCAATCATATGCAGT 59.396 34.615 0.00 0.00 0.00 4.40
3501 3529 7.034685 TGACTTCCAAATCAATCATATGCAG 57.965 36.000 0.00 0.00 0.00 4.41
3502 3530 7.407393 TTGACTTCCAAATCAATCATATGCA 57.593 32.000 0.00 0.00 29.89 3.96
3503 3531 7.977853 AGTTTGACTTCCAAATCAATCATATGC 59.022 33.333 0.00 0.00 45.48 3.14
3504 3532 9.865321 AAGTTTGACTTCCAAATCAATCATATG 57.135 29.630 0.00 0.00 45.48 1.78
3508 3536 9.695526 CAATAAGTTTGACTTCCAAATCAATCA 57.304 29.630 0.00 0.00 45.48 2.57
3509 3537 9.143631 CCAATAAGTTTGACTTCCAAATCAATC 57.856 33.333 0.00 0.00 45.48 2.67
3510 3538 8.869109 TCCAATAAGTTTGACTTCCAAATCAAT 58.131 29.630 0.00 0.00 45.48 2.57
3511 3539 8.243961 TCCAATAAGTTTGACTTCCAAATCAA 57.756 30.769 0.00 0.00 45.48 2.57
3512 3540 7.831691 TCCAATAAGTTTGACTTCCAAATCA 57.168 32.000 0.00 0.00 45.48 2.57
3513 3541 9.710900 AAATCCAATAAGTTTGACTTCCAAATC 57.289 29.630 0.00 0.00 45.48 2.17
3515 3543 9.898152 AAAAATCCAATAAGTTTGACTTCCAAA 57.102 25.926 0.00 0.00 42.07 3.28
3516 3544 9.323985 CAAAAATCCAATAAGTTTGACTTCCAA 57.676 29.630 0.00 0.00 39.51 3.53
3517 3545 7.930865 CCAAAAATCCAATAAGTTTGACTTCCA 59.069 33.333 0.00 0.00 39.51 3.53
3518 3546 8.147704 TCCAAAAATCCAATAAGTTTGACTTCC 58.852 33.333 0.00 0.00 39.51 3.46
3519 3547 9.196552 CTCCAAAAATCCAATAAGTTTGACTTC 57.803 33.333 0.00 0.00 39.51 3.01
3520 3548 8.150296 CCTCCAAAAATCCAATAAGTTTGACTT 58.850 33.333 0.00 0.00 41.97 3.01
3521 3549 7.290014 ACCTCCAAAAATCCAATAAGTTTGACT 59.710 33.333 0.00 0.00 32.18 3.41
3522 3550 7.441836 ACCTCCAAAAATCCAATAAGTTTGAC 58.558 34.615 0.00 0.00 32.18 3.18
3523 3551 7.508977 AGACCTCCAAAAATCCAATAAGTTTGA 59.491 33.333 0.00 0.00 32.18 2.69
3524 3552 7.670364 AGACCTCCAAAAATCCAATAAGTTTG 58.330 34.615 0.00 0.00 0.00 2.93
3525 3553 7.508977 TGAGACCTCCAAAAATCCAATAAGTTT 59.491 33.333 0.00 0.00 0.00 2.66
3526 3554 7.010160 TGAGACCTCCAAAAATCCAATAAGTT 58.990 34.615 0.00 0.00 0.00 2.66
3527 3555 6.552008 TGAGACCTCCAAAAATCCAATAAGT 58.448 36.000 0.00 0.00 0.00 2.24
3528 3556 6.405176 GCTGAGACCTCCAAAAATCCAATAAG 60.405 42.308 0.00 0.00 0.00 1.73
3529 3557 5.418840 GCTGAGACCTCCAAAAATCCAATAA 59.581 40.000 0.00 0.00 0.00 1.40
3530 3558 4.949856 GCTGAGACCTCCAAAAATCCAATA 59.050 41.667 0.00 0.00 0.00 1.90
3531 3559 3.766051 GCTGAGACCTCCAAAAATCCAAT 59.234 43.478 0.00 0.00 0.00 3.16
3532 3560 3.157087 GCTGAGACCTCCAAAAATCCAA 58.843 45.455 0.00 0.00 0.00 3.53
3533 3561 2.376518 AGCTGAGACCTCCAAAAATCCA 59.623 45.455 0.00 0.00 0.00 3.41
3534 3562 3.078891 AGCTGAGACCTCCAAAAATCC 57.921 47.619 0.00 0.00 0.00 3.01
3535 3563 5.882557 TCAATAGCTGAGACCTCCAAAAATC 59.117 40.000 0.00 0.00 0.00 2.17
3536 3564 5.819991 TCAATAGCTGAGACCTCCAAAAAT 58.180 37.500 0.00 0.00 0.00 1.82
3537 3565 5.241403 TCAATAGCTGAGACCTCCAAAAA 57.759 39.130 0.00 0.00 0.00 1.94
3538 3566 4.908601 TCAATAGCTGAGACCTCCAAAA 57.091 40.909 0.00 0.00 0.00 2.44
3539 3567 5.441718 AATCAATAGCTGAGACCTCCAAA 57.558 39.130 0.00 0.00 37.52 3.28
3540 3568 6.327365 TCATAATCAATAGCTGAGACCTCCAA 59.673 38.462 0.00 0.00 37.52 3.53
3541 3569 5.840693 TCATAATCAATAGCTGAGACCTCCA 59.159 40.000 0.00 0.00 37.52 3.86
3542 3570 6.014669 AGTCATAATCAATAGCTGAGACCTCC 60.015 42.308 0.00 0.00 37.52 4.30
3543 3571 6.991938 AGTCATAATCAATAGCTGAGACCTC 58.008 40.000 0.00 0.00 37.52 3.85
3544 3572 6.992664 AGTCATAATCAATAGCTGAGACCT 57.007 37.500 0.00 0.00 37.52 3.85
3545 3573 9.717942 ATTTAGTCATAATCAATAGCTGAGACC 57.282 33.333 0.00 0.00 37.52 3.85
3799 3827 7.042321 TGTCAAAAAGTTCCAAGTAGACATACG 60.042 37.037 0.00 0.00 36.97 3.06
3862 3890 0.451783 CGCAAGGCAGTGGGTAATTC 59.548 55.000 0.00 0.00 0.00 2.17
4003 4033 3.131400 ACTTAGGGTCGAAGCAGATCTTC 59.869 47.826 0.00 0.00 46.01 2.87
4025 4055 3.153919 GTGCAGGAGGAAACCAAACATA 58.846 45.455 0.00 0.00 0.00 2.29
4089 4119 2.804527 CCAGACACACAACTGTCATGAG 59.195 50.000 0.00 0.00 42.74 2.90
4298 4351 7.227314 AGCAATCAATATCGAGCTTTCATGTAA 59.773 33.333 0.00 0.00 0.00 2.41
4299 4352 6.707608 AGCAATCAATATCGAGCTTTCATGTA 59.292 34.615 0.00 0.00 0.00 2.29
4300 4353 5.530171 AGCAATCAATATCGAGCTTTCATGT 59.470 36.000 0.00 0.00 0.00 3.21
4315 4368 7.201938 CCCAACATCCAATAGTAAGCAATCAAT 60.202 37.037 0.00 0.00 0.00 2.57
4322 4375 6.715347 AATTCCCAACATCCAATAGTAAGC 57.285 37.500 0.00 0.00 0.00 3.09
4451 4507 1.183030 TCTGCTGCTGCCTTGCATTT 61.183 50.000 13.47 0.00 42.48 2.32
4454 4510 0.106868 ATATCTGCTGCTGCCTTGCA 60.107 50.000 13.47 10.62 41.05 4.08
4536 4592 0.409092 TCTGGGTTGCCATGTTGGAT 59.591 50.000 0.00 0.00 40.96 3.41
4550 4606 0.600057 GCTGCCTTGTTTTCTCTGGG 59.400 55.000 0.00 0.00 0.00 4.45
4728 4784 6.264832 CAAGTATGCTGACAGTTTTTGTTGA 58.735 36.000 3.99 0.00 41.05 3.18
4874 4930 3.691609 CCTCCTGTGGAAGCACTAAATTC 59.308 47.826 0.00 0.00 0.00 2.17
4966 5100 1.526575 CTGCATTGCGTTCCCTGGTT 61.527 55.000 3.84 0.00 0.00 3.67
5106 5240 6.764085 TGGTAATTGTTATTCCGACGATCAAT 59.236 34.615 0.00 0.00 0.00 2.57
5137 5271 4.743151 GGAATGCTGATTCGTCATACGTTA 59.257 41.667 0.00 0.00 43.14 3.18
5164 5298 1.153289 GCATGCTGAGTCCCACGAT 60.153 57.895 11.37 0.00 0.00 3.73
5346 5480 1.395635 TGCTGATTGTGATGATGCCC 58.604 50.000 0.00 0.00 0.00 5.36
5371 5505 1.755179 CTCCTGAATCATTTGCCCGT 58.245 50.000 0.00 0.00 0.00 5.28
5434 5568 3.758554 CTGGTTGTGGTTTATTCTCCAGG 59.241 47.826 0.00 0.00 37.94 4.45
5444 5578 3.563479 GGGGATGATACTGGTTGTGGTTT 60.563 47.826 0.00 0.00 0.00 3.27
5450 5584 2.105477 CTCCTGGGGATGATACTGGTTG 59.895 54.545 0.00 0.00 0.00 3.77
5492 5626 3.519107 TGTGGTTCATTCTCCAGCTATCA 59.481 43.478 0.00 0.00 34.16 2.15
5701 5835 2.887152 AGTTGACTGACAAAATGGGAGC 59.113 45.455 0.00 0.00 40.36 4.70
5853 5994 0.321564 TTGCATGGAGGTTCTCGTGG 60.322 55.000 0.00 0.00 0.00 4.94
5857 5999 6.107901 AGACTATATTGCATGGAGGTTCTC 57.892 41.667 0.00 0.00 0.00 2.87
5902 6044 3.545703 ACTGACAAGGTATATTGCAGCC 58.454 45.455 0.00 0.00 37.60 4.85
5947 6091 8.335532 TCAGCTTGTAATGCTACAAACTTATT 57.664 30.769 0.39 0.00 46.61 1.40
6073 6217 8.028938 GGTTCAGACTAAATTGTTAATGCACAT 58.971 33.333 0.00 0.00 0.00 3.21
6084 6228 5.648092 CAGGTAAGGGGTTCAGACTAAATTG 59.352 44.000 0.00 0.00 0.00 2.32
6137 6374 9.875675 CTTGACACTAAGAGAGAAAAATGAAAG 57.124 33.333 0.00 0.00 0.00 2.62
6139 6376 7.716998 AGCTTGACACTAAGAGAGAAAAATGAA 59.283 33.333 0.00 0.00 0.00 2.57
6141 6378 7.432350 AGCTTGACACTAAGAGAGAAAAATG 57.568 36.000 0.00 0.00 0.00 2.32
6142 6379 7.604545 GGTAGCTTGACACTAAGAGAGAAAAAT 59.395 37.037 0.00 0.00 0.00 1.82
6145 6382 5.775701 AGGTAGCTTGACACTAAGAGAGAAA 59.224 40.000 0.00 0.00 0.00 2.52
6238 7265 7.012327 CGTCTGCTATCTAATTGAATGGGAAAA 59.988 37.037 0.00 0.00 0.00 2.29
6240 7267 5.991606 CGTCTGCTATCTAATTGAATGGGAA 59.008 40.000 0.00 0.00 0.00 3.97
6241 7268 5.304357 TCGTCTGCTATCTAATTGAATGGGA 59.696 40.000 0.00 0.00 0.00 4.37
6242 7269 5.541845 TCGTCTGCTATCTAATTGAATGGG 58.458 41.667 0.00 0.00 0.00 4.00
6243 7270 6.925718 TCTTCGTCTGCTATCTAATTGAATGG 59.074 38.462 0.00 0.00 0.00 3.16
6261 7288 4.486090 TCAAGTTGATACTGCTCTTCGTC 58.514 43.478 0.08 0.00 34.01 4.20
6270 7297 6.992063 ATGCCTAGTTTCAAGTTGATACTG 57.008 37.500 28.70 20.54 38.71 2.74
6273 7300 9.461312 AACAATATGCCTAGTTTCAAGTTGATA 57.539 29.630 6.36 0.00 0.00 2.15
6289 7316 5.814783 TGCAAAACAAACAAACAATATGCC 58.185 33.333 0.00 0.00 0.00 4.40
6294 7321 7.983307 ACACATATGCAAAACAAACAAACAAT 58.017 26.923 1.58 0.00 0.00 2.71
6297 7324 9.760660 TTTTACACATATGCAAAACAAACAAAC 57.239 25.926 1.58 0.00 28.07 2.93
6300 7327 8.932945 TCTTTTACACATATGCAAAACAAACA 57.067 26.923 1.58 0.00 29.75 2.83
6301 7328 9.796062 CATCTTTTACACATATGCAAAACAAAC 57.204 29.630 1.58 0.00 29.75 2.93
6302 7329 9.755804 TCATCTTTTACACATATGCAAAACAAA 57.244 25.926 1.58 0.00 29.75 2.83
6303 7330 9.755804 TTCATCTTTTACACATATGCAAAACAA 57.244 25.926 1.58 0.00 29.75 2.83
6304 7331 9.926158 ATTCATCTTTTACACATATGCAAAACA 57.074 25.926 1.58 0.00 29.75 2.83
6309 7336 9.571810 GTGAAATTCATCTTTTACACATATGCA 57.428 29.630 1.58 0.00 0.00 3.96
6310 7337 9.571810 TGTGAAATTCATCTTTTACACATATGC 57.428 29.630 1.58 0.00 31.88 3.14
6315 7342 9.814899 ACAAATGTGAAATTCATCTTTTACACA 57.185 25.926 0.00 0.00 37.41 3.72
6374 7401 8.628882 TTAGTGTCATTGATAATCGTGTAGTG 57.371 34.615 0.00 0.00 0.00 2.74
6443 7470 7.934120 GCTTTCCCTCAACTATAATGTCACTAT 59.066 37.037 0.00 0.00 0.00 2.12
6447 7474 6.156949 AGAGCTTTCCCTCAACTATAATGTCA 59.843 38.462 0.00 0.00 34.26 3.58
6449 7476 6.567602 AGAGCTTTCCCTCAACTATAATGT 57.432 37.500 0.00 0.00 34.26 2.71
6450 7477 8.964476 TTTAGAGCTTTCCCTCAACTATAATG 57.036 34.615 0.00 0.00 34.26 1.90
6462 7493 2.825532 TGGTGCAATTTAGAGCTTTCCC 59.174 45.455 0.00 0.00 0.00 3.97
6465 7496 4.935352 TGTTGGTGCAATTTAGAGCTTT 57.065 36.364 0.00 0.00 0.00 3.51
6479 7510 8.839310 TTGGGACATTTATTTATTTGTTGGTG 57.161 30.769 0.00 0.00 39.30 4.17
6521 7552 1.341209 GCAAAGGTGAAGGGACCAAAG 59.659 52.381 0.00 0.00 38.63 2.77
6533 7564 3.980775 CCTAAACGAACAATGCAAAGGTG 59.019 43.478 0.00 0.00 0.00 4.00
6564 7595 5.044402 AGGTTGGCCTAAATGTAACTATGGT 60.044 40.000 3.32 0.00 44.90 3.55
6565 7596 5.445964 AGGTTGGCCTAAATGTAACTATGG 58.554 41.667 3.32 0.00 44.90 2.74
6584 7615 2.949644 GGCTATGCGGACAAATAAGGTT 59.050 45.455 0.00 0.00 0.00 3.50
6598 7629 8.028938 TCTTTTTCTTGACAATTTAGGCTATGC 58.971 33.333 0.00 0.00 0.00 3.14
6617 7648 9.220767 ACAGGTCTTCTACACATTATCTTTTTC 57.779 33.333 0.00 0.00 0.00 2.29
6621 7655 7.907389 TGAACAGGTCTTCTACACATTATCTT 58.093 34.615 0.00 0.00 0.00 2.40
6623 7657 7.254590 GCATGAACAGGTCTTCTACACATTATC 60.255 40.741 0.00 0.00 0.00 1.75
6625 7659 5.874810 GCATGAACAGGTCTTCTACACATTA 59.125 40.000 0.00 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.