Multiple sequence alignment - TraesCS5B01G070900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G070900 | chr5B | 100.000 | 2272 | 0 | 0 | 770 | 3041 | 82213770 | 82211499 | 0.000000e+00 | 4196.0 |
1 | TraesCS5B01G070900 | chr5B | 100.000 | 267 | 0 | 0 | 1 | 267 | 82214539 | 82214273 | 7.570000e-136 | 494.0 |
2 | TraesCS5B01G070900 | chr5B | 97.468 | 79 | 1 | 1 | 2454 | 2531 | 82212020 | 82211942 | 1.900000e-27 | 134.0 |
3 | TraesCS5B01G070900 | chr5B | 97.468 | 79 | 1 | 1 | 2520 | 2598 | 82212086 | 82212009 | 1.900000e-27 | 134.0 |
4 | TraesCS5B01G070900 | chr5D | 93.302 | 1478 | 46 | 21 | 770 | 2223 | 72223409 | 72224857 | 0.000000e+00 | 2132.0 |
5 | TraesCS5B01G070900 | chr5D | 95.652 | 253 | 5 | 1 | 1 | 253 | 72223109 | 72223355 | 4.720000e-108 | 401.0 |
6 | TraesCS5B01G070900 | chr5D | 93.243 | 222 | 14 | 1 | 2698 | 2918 | 369716656 | 369716877 | 2.920000e-85 | 326.0 |
7 | TraesCS5B01G070900 | chr5D | 94.536 | 183 | 7 | 2 | 2520 | 2702 | 72224975 | 72225154 | 2.310000e-71 | 279.0 |
8 | TraesCS5B01G070900 | chr5D | 91.954 | 174 | 9 | 2 | 2363 | 2531 | 72224879 | 72225052 | 3.920000e-59 | 239.0 |
9 | TraesCS5B01G070900 | chr5D | 95.200 | 125 | 6 | 0 | 2917 | 3041 | 72225153 | 72225277 | 6.650000e-47 | 198.0 |
10 | TraesCS5B01G070900 | chr5A | 89.463 | 1528 | 49 | 31 | 770 | 2239 | 64761861 | 64763334 | 0.000000e+00 | 1827.0 |
11 | TraesCS5B01G070900 | chr5A | 89.434 | 265 | 6 | 8 | 1 | 265 | 64761565 | 64761807 | 6.330000e-82 | 315.0 |
12 | TraesCS5B01G070900 | chr5A | 94.737 | 152 | 6 | 1 | 2551 | 2702 | 64764230 | 64764379 | 5.070000e-58 | 235.0 |
13 | TraesCS5B01G070900 | chr5A | 88.406 | 138 | 8 | 3 | 2363 | 2492 | 64763333 | 64763470 | 3.140000e-35 | 159.0 |
14 | TraesCS5B01G070900 | chr3D | 93.750 | 224 | 13 | 1 | 2696 | 2918 | 108290838 | 108291061 | 4.860000e-88 | 335.0 |
15 | TraesCS5B01G070900 | chr1D | 94.091 | 220 | 11 | 2 | 2700 | 2918 | 46330817 | 46331035 | 1.750000e-87 | 333.0 |
16 | TraesCS5B01G070900 | chr7B | 94.064 | 219 | 12 | 1 | 2701 | 2918 | 89360819 | 89360601 | 6.280000e-87 | 331.0 |
17 | TraesCS5B01G070900 | chr7B | 93.636 | 220 | 13 | 1 | 2700 | 2918 | 71148084 | 71147865 | 8.130000e-86 | 327.0 |
18 | TraesCS5B01G070900 | chr7B | 93.243 | 222 | 13 | 2 | 2701 | 2921 | 714532096 | 714531876 | 2.920000e-85 | 326.0 |
19 | TraesCS5B01G070900 | chr7A | 93.304 | 224 | 14 | 1 | 2696 | 2918 | 219906655 | 219906878 | 2.260000e-86 | 329.0 |
20 | TraesCS5B01G070900 | chr7A | 96.479 | 142 | 3 | 2 | 2233 | 2372 | 351612891 | 351612750 | 1.820000e-57 | 233.0 |
21 | TraesCS5B01G070900 | chr7A | 76.265 | 257 | 30 | 20 | 1 | 229 | 582214160 | 582213907 | 1.150000e-19 | 108.0 |
22 | TraesCS5B01G070900 | chr2D | 92.511 | 227 | 16 | 1 | 2701 | 2926 | 204855801 | 204856027 | 1.050000e-84 | 324.0 |
23 | TraesCS5B01G070900 | chr2D | 91.525 | 236 | 18 | 2 | 2682 | 2916 | 643767974 | 643768208 | 1.050000e-84 | 324.0 |
24 | TraesCS5B01G070900 | chr4B | 98.551 | 138 | 0 | 2 | 2239 | 2374 | 294107702 | 294107565 | 3.030000e-60 | 243.0 |
25 | TraesCS5B01G070900 | chr4B | 77.612 | 268 | 24 | 18 | 2 | 234 | 673237353 | 673237619 | 2.460000e-26 | 130.0 |
26 | TraesCS5B01G070900 | chr4B | 81.176 | 170 | 21 | 6 | 1900 | 2060 | 673238891 | 673239058 | 3.180000e-25 | 126.0 |
27 | TraesCS5B01G070900 | chr4B | 97.143 | 70 | 2 | 0 | 1539 | 1608 | 673238483 | 673238552 | 5.330000e-23 | 119.0 |
28 | TraesCS5B01G070900 | chr3B | 98.551 | 138 | 1 | 1 | 2237 | 2373 | 25395777 | 25395640 | 3.030000e-60 | 243.0 |
29 | TraesCS5B01G070900 | chr4A | 97.810 | 137 | 3 | 0 | 2238 | 2374 | 606364445 | 606364309 | 1.410000e-58 | 237.0 |
30 | TraesCS5B01G070900 | chr4A | 92.308 | 156 | 9 | 3 | 2240 | 2392 | 726659569 | 726659414 | 5.100000e-53 | 219.0 |
31 | TraesCS5B01G070900 | chr2B | 97.122 | 139 | 4 | 0 | 2231 | 2369 | 21749447 | 21749585 | 5.070000e-58 | 235.0 |
32 | TraesCS5B01G070900 | chr6A | 97.794 | 136 | 2 | 1 | 2240 | 2375 | 296802065 | 296802199 | 1.820000e-57 | 233.0 |
33 | TraesCS5B01G070900 | chr6A | 95.105 | 143 | 5 | 2 | 2225 | 2366 | 594970371 | 594970512 | 1.100000e-54 | 224.0 |
34 | TraesCS5B01G070900 | chr1A | 97.101 | 138 | 2 | 2 | 2230 | 2366 | 213289528 | 213289392 | 6.560000e-57 | 231.0 |
35 | TraesCS5B01G070900 | chr4D | 83.333 | 204 | 14 | 8 | 1433 | 1620 | 491459430 | 491459231 | 1.450000e-38 | 171.0 |
36 | TraesCS5B01G070900 | chr4D | 75.706 | 354 | 51 | 23 | 1036 | 1383 | 491508178 | 491507854 | 8.790000e-31 | 145.0 |
37 | TraesCS5B01G070900 | chr4D | 81.720 | 186 | 17 | 11 | 1891 | 2065 | 491467155 | 491466976 | 4.090000e-29 | 139.0 |
38 | TraesCS5B01G070900 | chr4D | 95.161 | 62 | 3 | 0 | 1740 | 1801 | 491507020 | 491506959 | 6.940000e-17 | 99.0 |
39 | TraesCS5B01G070900 | chr4D | 96.552 | 58 | 2 | 0 | 1539 | 1596 | 491507703 | 491507646 | 2.500000e-16 | 97.1 |
40 | TraesCS5B01G070900 | chrUn | 88.710 | 124 | 10 | 2 | 2917 | 3040 | 29470571 | 29470452 | 6.790000e-32 | 148.0 |
41 | TraesCS5B01G070900 | chr3A | 95.161 | 62 | 3 | 0 | 1740 | 1801 | 703646972 | 703646911 | 6.940000e-17 | 99.0 |
42 | TraesCS5B01G070900 | chr3A | 80.000 | 160 | 8 | 10 | 102 | 237 | 703647930 | 703647771 | 2.500000e-16 | 97.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5B01G070900 | chr5B | 82211499 | 82214539 | 3040 | True | 1239.5 | 4196 | 98.7340 | 1 | 3041 | 4 | chr5B.!!$R1 | 3040 |
1 | TraesCS5B01G070900 | chr5D | 72223109 | 72225277 | 2168 | False | 649.8 | 2132 | 94.1288 | 1 | 3041 | 5 | chr5D.!!$F2 | 3040 |
2 | TraesCS5B01G070900 | chr5A | 64761565 | 64764379 | 2814 | False | 634.0 | 1827 | 90.5100 | 1 | 2702 | 4 | chr5A.!!$F1 | 2701 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
71 | 72 | 0.109504 | GGTCACTCACTCACTCGCTC | 60.110 | 60.0 | 0.0 | 0.0 | 0.00 | 5.03 | F |
1129 | 1144 | 0.388134 | CATGGTCCGTTCGTCGACTT | 60.388 | 55.0 | 14.7 | 0.0 | 42.86 | 3.01 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1418 | 1452 | 0.603569 | AGCCTCGCATTCTATACGGG | 59.396 | 55.0 | 0.0 | 0.00 | 0.00 | 5.28 | R |
2567 | 3417 | 0.034767 | CTGAGCAGAGCCCAATTGGA | 60.035 | 55.0 | 26.6 | 1.07 | 37.39 | 3.53 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
70 | 71 | 1.528292 | GGGTCACTCACTCACTCGCT | 61.528 | 60.000 | 0.00 | 0.00 | 0.00 | 4.93 |
71 | 72 | 0.109504 | GGTCACTCACTCACTCGCTC | 60.110 | 60.000 | 0.00 | 0.00 | 0.00 | 5.03 |
73 | 74 | 1.135803 | GTCACTCACTCACTCGCTCTC | 60.136 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
74 | 75 | 0.877743 | CACTCACTCACTCGCTCTCA | 59.122 | 55.000 | 0.00 | 0.00 | 0.00 | 3.27 |
75 | 76 | 0.878416 | ACTCACTCACTCGCTCTCAC | 59.122 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
76 | 77 | 1.164411 | CTCACTCACTCGCTCTCACT | 58.836 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
131 | 132 | 3.948719 | TCGGCAACAGGTGTCCCC | 61.949 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
832 | 839 | 3.735181 | GGGACGGTGACATAGACAC | 57.265 | 57.895 | 0.00 | 0.00 | 37.51 | 3.67 |
949 | 964 | 1.491670 | CGCGAGAGAGAGAGAGAGAG | 58.508 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
950 | 965 | 1.067060 | CGCGAGAGAGAGAGAGAGAGA | 59.933 | 57.143 | 0.00 | 0.00 | 0.00 | 3.10 |
977 | 992 | 1.037030 | ACCCACACAACACAAGCAGG | 61.037 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
994 | 1009 | 2.673523 | GCACTGAGCATCCAGGGT | 59.326 | 61.111 | 5.20 | 0.00 | 44.79 | 4.34 |
1026 | 1041 | 1.732917 | CTGCGGAGAGAAGAGCGAT | 59.267 | 57.895 | 0.00 | 0.00 | 0.00 | 4.58 |
1125 | 1140 | 3.186047 | GCCATGGTCCGTTCGTCG | 61.186 | 66.667 | 14.67 | 0.00 | 39.52 | 5.12 |
1129 | 1144 | 0.388134 | CATGGTCCGTTCGTCGACTT | 60.388 | 55.000 | 14.70 | 0.00 | 42.86 | 3.01 |
1167 | 1187 | 5.445069 | TCTCCTATATATGCTCTGCTCTCC | 58.555 | 45.833 | 0.00 | 0.00 | 0.00 | 3.71 |
1177 | 1197 | 0.894141 | TCTGCTCTCCTCTGTTCTGC | 59.106 | 55.000 | 0.00 | 0.00 | 0.00 | 4.26 |
1179 | 1199 | 2.098614 | CTGCTCTCCTCTGTTCTGCTA | 58.901 | 52.381 | 0.00 | 0.00 | 0.00 | 3.49 |
1192 | 1217 | 7.147863 | CCTCTGTTCTGCTATGCTAGATGATAT | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 1.63 |
1193 | 1218 | 8.131847 | TCTGTTCTGCTATGCTAGATGATATT | 57.868 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
1194 | 1219 | 8.591940 | TCTGTTCTGCTATGCTAGATGATATTT | 58.408 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
1379 | 1413 | 4.621747 | CGCTGGTAAGTTCATCTTCCTCTT | 60.622 | 45.833 | 0.00 | 0.00 | 37.56 | 2.85 |
1380 | 1414 | 4.873259 | GCTGGTAAGTTCATCTTCCTCTTC | 59.127 | 45.833 | 0.00 | 0.00 | 37.56 | 2.87 |
1381 | 1415 | 5.422214 | TGGTAAGTTCATCTTCCTCTTCC | 57.578 | 43.478 | 0.00 | 0.00 | 37.56 | 3.46 |
1382 | 1416 | 5.094387 | TGGTAAGTTCATCTTCCTCTTCCT | 58.906 | 41.667 | 0.00 | 0.00 | 37.56 | 3.36 |
1383 | 1417 | 5.187967 | TGGTAAGTTCATCTTCCTCTTCCTC | 59.812 | 44.000 | 0.00 | 0.00 | 37.56 | 3.71 |
1384 | 1418 | 5.423931 | GGTAAGTTCATCTTCCTCTTCCTCT | 59.576 | 44.000 | 0.00 | 0.00 | 37.56 | 3.69 |
1396 | 1430 | 1.887198 | TCTTCCTCTGGACGTCTGTTC | 59.113 | 52.381 | 16.46 | 0.00 | 0.00 | 3.18 |
1418 | 1452 | 4.024048 | TCAATTCCAACGTTGAGCTTCTTC | 60.024 | 41.667 | 29.35 | 0.00 | 31.24 | 2.87 |
1424 | 1458 | 1.549170 | ACGTTGAGCTTCTTCCCGTAT | 59.451 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
1425 | 1459 | 2.756760 | ACGTTGAGCTTCTTCCCGTATA | 59.243 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
1431 | 1465 | 3.991121 | GAGCTTCTTCCCGTATAGAATGC | 59.009 | 47.826 | 0.00 | 0.00 | 30.57 | 3.56 |
1478 | 1516 | 5.450818 | TCCCTTGTGGCTCTATGTATTTT | 57.549 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
1479 | 1517 | 6.569127 | TCCCTTGTGGCTCTATGTATTTTA | 57.431 | 37.500 | 0.00 | 0.00 | 0.00 | 1.52 |
1480 | 1518 | 7.149202 | TCCCTTGTGGCTCTATGTATTTTAT | 57.851 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
1481 | 1519 | 6.998074 | TCCCTTGTGGCTCTATGTATTTTATG | 59.002 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
1482 | 1520 | 6.294176 | CCCTTGTGGCTCTATGTATTTTATGC | 60.294 | 42.308 | 0.00 | 0.00 | 0.00 | 3.14 |
1604 | 1647 | 0.456312 | GACGTTGGAGCCTACGACAG | 60.456 | 60.000 | 25.59 | 2.92 | 45.10 | 3.51 |
1605 | 1648 | 1.805945 | CGTTGGAGCCTACGACAGC | 60.806 | 63.158 | 16.53 | 0.00 | 45.10 | 4.40 |
1606 | 1649 | 1.805945 | GTTGGAGCCTACGACAGCG | 60.806 | 63.158 | 0.00 | 0.00 | 44.79 | 5.18 |
1607 | 1650 | 1.974875 | TTGGAGCCTACGACAGCGA | 60.975 | 57.895 | 0.00 | 0.00 | 41.64 | 4.93 |
1608 | 1651 | 1.320344 | TTGGAGCCTACGACAGCGAT | 61.320 | 55.000 | 0.00 | 0.00 | 41.64 | 4.58 |
1609 | 1652 | 1.299468 | GGAGCCTACGACAGCGATG | 60.299 | 63.158 | 0.00 | 0.00 | 41.64 | 3.84 |
1756 | 1800 | 1.475751 | CGCAGGGTGCAGGAGAAATAT | 60.476 | 52.381 | 0.00 | 0.00 | 45.36 | 1.28 |
1849 | 1911 | 9.178758 | GATATCATATCATGGAGGTTTTTACCC | 57.821 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
1858 | 1920 | 0.521735 | GGTTTTTACCCAGCAGAGCG | 59.478 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1882 | 1949 | 6.092944 | CGCTACTTATTTATTGTTCACCACCA | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
1887 | 1954 | 2.593925 | TATTGTTCACCACCATGCCA | 57.406 | 45.000 | 0.00 | 0.00 | 0.00 | 4.92 |
1888 | 1955 | 1.941377 | ATTGTTCACCACCATGCCAT | 58.059 | 45.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1889 | 1956 | 0.967662 | TTGTTCACCACCATGCCATG | 59.032 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1890 | 1957 | 1.216178 | GTTCACCACCATGCCATGC | 59.784 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
1891 | 1958 | 1.983481 | TTCACCACCATGCCATGCC | 60.983 | 57.895 | 0.00 | 0.00 | 0.00 | 4.40 |
2024 | 2091 | 2.532531 | TCGTCGTCGTCCAAGATAAC | 57.467 | 50.000 | 1.33 | 0.00 | 38.33 | 1.89 |
2041 | 2108 | 0.396811 | AACTGCCGGCAAGAAGTAGT | 59.603 | 50.000 | 32.09 | 19.96 | 0.00 | 2.73 |
2042 | 2109 | 1.263356 | ACTGCCGGCAAGAAGTAGTA | 58.737 | 50.000 | 32.09 | 2.57 | 0.00 | 1.82 |
2043 | 2110 | 1.204941 | ACTGCCGGCAAGAAGTAGTAG | 59.795 | 52.381 | 32.09 | 16.86 | 0.00 | 2.57 |
2076 | 2143 | 0.109272 | TGATCTTCGCACGTGGAGAC | 60.109 | 55.000 | 18.88 | 0.00 | 0.00 | 3.36 |
2153 | 2220 | 2.947448 | TCATCCACGACAGATGACTG | 57.053 | 50.000 | 11.06 | 0.00 | 43.96 | 3.51 |
2191 | 2258 | 1.448717 | GGAGGCGAAGAGAGGCAAC | 60.449 | 63.158 | 0.00 | 0.00 | 36.55 | 4.17 |
2197 | 2264 | 1.376037 | GAAGAGAGGCAACCACCCG | 60.376 | 63.158 | 0.00 | 0.00 | 37.17 | 5.28 |
2210 | 2277 | 3.443145 | ACCACCCGGATTAATGTTGAA | 57.557 | 42.857 | 0.73 | 0.00 | 35.59 | 2.69 |
2239 | 2313 | 5.068460 | CAGCATAGCCTAGTCACTAAGAAGT | 59.932 | 44.000 | 0.00 | 0.00 | 35.91 | 3.01 |
2240 | 2314 | 6.263392 | CAGCATAGCCTAGTCACTAAGAAGTA | 59.737 | 42.308 | 0.00 | 0.00 | 33.48 | 2.24 |
2241 | 2315 | 6.263617 | AGCATAGCCTAGTCACTAAGAAGTAC | 59.736 | 42.308 | 0.00 | 0.00 | 33.48 | 2.73 |
2242 | 2316 | 6.263617 | GCATAGCCTAGTCACTAAGAAGTACT | 59.736 | 42.308 | 0.00 | 0.00 | 33.48 | 2.73 |
2243 | 2317 | 7.520937 | GCATAGCCTAGTCACTAAGAAGTACTC | 60.521 | 44.444 | 0.00 | 0.00 | 33.48 | 2.59 |
2244 | 2318 | 5.195185 | AGCCTAGTCACTAAGAAGTACTCC | 58.805 | 45.833 | 0.00 | 0.00 | 33.48 | 3.85 |
2245 | 2319 | 4.338964 | GCCTAGTCACTAAGAAGTACTCCC | 59.661 | 50.000 | 0.00 | 0.00 | 33.48 | 4.30 |
2246 | 2320 | 5.757988 | CCTAGTCACTAAGAAGTACTCCCT | 58.242 | 45.833 | 0.00 | 0.00 | 33.48 | 4.20 |
2247 | 2321 | 5.824097 | CCTAGTCACTAAGAAGTACTCCCTC | 59.176 | 48.000 | 0.00 | 0.00 | 33.48 | 4.30 |
2248 | 2322 | 4.602107 | AGTCACTAAGAAGTACTCCCTCC | 58.398 | 47.826 | 0.00 | 0.00 | 33.48 | 4.30 |
2249 | 2323 | 3.377798 | GTCACTAAGAAGTACTCCCTCCG | 59.622 | 52.174 | 0.00 | 0.00 | 33.48 | 4.63 |
2250 | 2324 | 3.009916 | TCACTAAGAAGTACTCCCTCCGT | 59.990 | 47.826 | 0.00 | 0.00 | 33.48 | 4.69 |
2251 | 2325 | 3.762823 | CACTAAGAAGTACTCCCTCCGTT | 59.237 | 47.826 | 0.00 | 0.00 | 33.48 | 4.44 |
2252 | 2326 | 4.015764 | ACTAAGAAGTACTCCCTCCGTTC | 58.984 | 47.826 | 0.00 | 0.00 | 32.84 | 3.95 |
2253 | 2327 | 1.849977 | AGAAGTACTCCCTCCGTTCC | 58.150 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
2254 | 2328 | 0.455005 | GAAGTACTCCCTCCGTTCCG | 59.545 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2255 | 2329 | 0.038744 | AAGTACTCCCTCCGTTCCGA | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
2256 | 2330 | 0.038744 | AGTACTCCCTCCGTTCCGAA | 59.961 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2257 | 2331 | 1.109609 | GTACTCCCTCCGTTCCGAAT | 58.890 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2258 | 2332 | 1.479730 | GTACTCCCTCCGTTCCGAATT | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 2.17 |
2259 | 2333 | 1.856629 | ACTCCCTCCGTTCCGAATTA | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2260 | 2334 | 1.479730 | ACTCCCTCCGTTCCGAATTAC | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
2261 | 2335 | 1.755380 | CTCCCTCCGTTCCGAATTACT | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2262 | 2336 | 2.167900 | CTCCCTCCGTTCCGAATTACTT | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2263 | 2337 | 2.093869 | TCCCTCCGTTCCGAATTACTTG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2264 | 2338 | 2.354403 | CCCTCCGTTCCGAATTACTTGT | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2265 | 2339 | 2.928116 | CCTCCGTTCCGAATTACTTGTC | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2266 | 2340 | 3.368116 | CCTCCGTTCCGAATTACTTGTCT | 60.368 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2267 | 2341 | 4.243270 | CTCCGTTCCGAATTACTTGTCTT | 58.757 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2268 | 2342 | 3.991773 | TCCGTTCCGAATTACTTGTCTTG | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 3.02 |
2269 | 2343 | 3.124636 | CCGTTCCGAATTACTTGTCTTGG | 59.875 | 47.826 | 0.00 | 0.00 | 0.00 | 3.61 |
2270 | 2344 | 3.991773 | CGTTCCGAATTACTTGTCTTGGA | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
2271 | 2345 | 4.630069 | CGTTCCGAATTACTTGTCTTGGAT | 59.370 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2272 | 2346 | 5.121768 | CGTTCCGAATTACTTGTCTTGGATT | 59.878 | 40.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2273 | 2347 | 6.348213 | CGTTCCGAATTACTTGTCTTGGATTT | 60.348 | 38.462 | 0.00 | 0.00 | 0.00 | 2.17 |
2274 | 2348 | 6.494893 | TCCGAATTACTTGTCTTGGATTTG | 57.505 | 37.500 | 0.00 | 0.00 | 0.00 | 2.32 |
2275 | 2349 | 6.001460 | TCCGAATTACTTGTCTTGGATTTGT | 58.999 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2276 | 2350 | 6.148811 | TCCGAATTACTTGTCTTGGATTTGTC | 59.851 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2277 | 2351 | 6.149474 | CCGAATTACTTGTCTTGGATTTGTCT | 59.851 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2278 | 2352 | 7.333423 | CCGAATTACTTGTCTTGGATTTGTCTA | 59.667 | 37.037 | 0.00 | 0.00 | 0.00 | 2.59 |
2279 | 2353 | 8.383619 | CGAATTACTTGTCTTGGATTTGTCTAG | 58.616 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2280 | 2354 | 9.436957 | GAATTACTTGTCTTGGATTTGTCTAGA | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.43 |
2281 | 2355 | 9.965902 | AATTACTTGTCTTGGATTTGTCTAGAT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 1.98 |
2283 | 2357 | 9.871238 | TTACTTGTCTTGGATTTGTCTAGATAC | 57.129 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2284 | 2358 | 7.036220 | ACTTGTCTTGGATTTGTCTAGATACG | 58.964 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2285 | 2359 | 5.902681 | TGTCTTGGATTTGTCTAGATACGG | 58.097 | 41.667 | 0.00 | 0.00 | 0.00 | 4.02 |
2286 | 2360 | 5.655090 | TGTCTTGGATTTGTCTAGATACGGA | 59.345 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2287 | 2361 | 6.323996 | TGTCTTGGATTTGTCTAGATACGGAT | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 4.18 |
2288 | 2362 | 6.642950 | GTCTTGGATTTGTCTAGATACGGATG | 59.357 | 42.308 | 0.00 | 0.00 | 0.00 | 3.51 |
2289 | 2363 | 6.323996 | TCTTGGATTTGTCTAGATACGGATGT | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2290 | 2364 | 7.504574 | TCTTGGATTTGTCTAGATACGGATGTA | 59.495 | 37.037 | 0.00 | 0.00 | 34.45 | 2.29 |
2291 | 2365 | 7.776618 | TGGATTTGTCTAGATACGGATGTAT | 57.223 | 36.000 | 0.00 | 0.00 | 43.97 | 2.29 |
2307 | 2381 | 8.466617 | ACGGATGTATCTAGACTCATTTTAGT | 57.533 | 34.615 | 11.25 | 7.70 | 0.00 | 2.24 |
2308 | 2382 | 8.353684 | ACGGATGTATCTAGACTCATTTTAGTG | 58.646 | 37.037 | 11.25 | 3.85 | 0.00 | 2.74 |
2309 | 2383 | 8.353684 | CGGATGTATCTAGACTCATTTTAGTGT | 58.646 | 37.037 | 11.25 | 0.00 | 0.00 | 3.55 |
2320 | 2394 | 8.697292 | AGACTCATTTTAGTGTTAGATACCTCC | 58.303 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
2321 | 2395 | 7.490000 | ACTCATTTTAGTGTTAGATACCTCCG | 58.510 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2322 | 2396 | 7.123847 | ACTCATTTTAGTGTTAGATACCTCCGT | 59.876 | 37.037 | 0.00 | 0.00 | 0.00 | 4.69 |
2323 | 2397 | 8.523915 | TCATTTTAGTGTTAGATACCTCCGTA | 57.476 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
2324 | 2398 | 9.139734 | TCATTTTAGTGTTAGATACCTCCGTAT | 57.860 | 33.333 | 0.00 | 0.00 | 37.92 | 3.06 |
2336 | 2410 | 7.690952 | GATACCTCCGTATCTAGACAAATCT | 57.309 | 40.000 | 0.00 | 0.00 | 45.11 | 2.40 |
2337 | 2411 | 8.789825 | GATACCTCCGTATCTAGACAAATCTA | 57.210 | 38.462 | 0.00 | 0.00 | 45.11 | 1.98 |
2338 | 2412 | 9.228949 | GATACCTCCGTATCTAGACAAATCTAA | 57.771 | 37.037 | 0.00 | 0.00 | 45.11 | 2.10 |
2339 | 2413 | 7.513371 | ACCTCCGTATCTAGACAAATCTAAG | 57.487 | 40.000 | 0.00 | 0.00 | 36.98 | 2.18 |
2340 | 2414 | 7.288560 | ACCTCCGTATCTAGACAAATCTAAGA | 58.711 | 38.462 | 0.00 | 0.00 | 36.98 | 2.10 |
2341 | 2415 | 7.229106 | ACCTCCGTATCTAGACAAATCTAAGAC | 59.771 | 40.741 | 0.00 | 0.00 | 36.98 | 3.01 |
2342 | 2416 | 7.228906 | CCTCCGTATCTAGACAAATCTAAGACA | 59.771 | 40.741 | 0.00 | 0.00 | 36.98 | 3.41 |
2343 | 2417 | 8.515695 | TCCGTATCTAGACAAATCTAAGACAA | 57.484 | 34.615 | 0.00 | 0.00 | 36.98 | 3.18 |
2344 | 2418 | 8.622157 | TCCGTATCTAGACAAATCTAAGACAAG | 58.378 | 37.037 | 0.00 | 0.00 | 36.98 | 3.16 |
2345 | 2419 | 8.407064 | CCGTATCTAGACAAATCTAAGACAAGT | 58.593 | 37.037 | 0.00 | 0.00 | 36.98 | 3.16 |
2352 | 2426 | 8.480643 | AGACAAATCTAAGACAAGTAATTCGG | 57.519 | 34.615 | 0.00 | 0.00 | 31.46 | 4.30 |
2353 | 2427 | 8.311836 | AGACAAATCTAAGACAAGTAATTCGGA | 58.688 | 33.333 | 0.00 | 0.00 | 31.46 | 4.55 |
2354 | 2428 | 8.842358 | ACAAATCTAAGACAAGTAATTCGGAA | 57.158 | 30.769 | 0.00 | 0.00 | 0.00 | 4.30 |
2355 | 2429 | 8.718734 | ACAAATCTAAGACAAGTAATTCGGAAC | 58.281 | 33.333 | 0.00 | 0.00 | 0.00 | 3.62 |
2384 | 2458 | 6.015434 | GGGAGTATTTATTTAAGGTGGCATGG | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 3.66 |
2390 | 2464 | 0.261402 | TTAAGGTGGCATGGGGATGG | 59.739 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2433 | 2507 | 5.519927 | GGACTTTTCCACTTTGTGATTTGTG | 59.480 | 40.000 | 0.00 | 0.00 | 42.30 | 3.33 |
2439 | 2518 | 4.275689 | TCCACTTTGTGATTTGTGCTACTG | 59.724 | 41.667 | 0.00 | 0.00 | 35.23 | 2.74 |
2511 | 3361 | 6.752285 | ATAAGCAATTATTCCAATTGGGCT | 57.248 | 33.333 | 24.29 | 18.69 | 37.92 | 5.19 |
2512 | 3362 | 4.677673 | AGCAATTATTCCAATTGGGCTC | 57.322 | 40.909 | 24.29 | 5.64 | 37.92 | 4.70 |
2513 | 3363 | 4.292643 | AGCAATTATTCCAATTGGGCTCT | 58.707 | 39.130 | 24.29 | 9.08 | 37.92 | 4.09 |
2514 | 3364 | 4.100498 | AGCAATTATTCCAATTGGGCTCTG | 59.900 | 41.667 | 24.29 | 14.33 | 37.92 | 3.35 |
2515 | 3365 | 4.374399 | CAATTATTCCAATTGGGCTCTGC | 58.626 | 43.478 | 24.29 | 0.00 | 34.80 | 4.26 |
2516 | 3366 | 3.386932 | TTATTCCAATTGGGCTCTGCT | 57.613 | 42.857 | 24.29 | 4.45 | 36.21 | 4.24 |
2517 | 3367 | 1.772836 | ATTCCAATTGGGCTCTGCTC | 58.227 | 50.000 | 24.29 | 0.00 | 36.21 | 4.26 |
2518 | 3368 | 0.405198 | TTCCAATTGGGCTCTGCTCA | 59.595 | 50.000 | 24.29 | 0.00 | 37.19 | 4.26 |
2519 | 3369 | 0.034767 | TCCAATTGGGCTCTGCTCAG | 60.035 | 55.000 | 24.29 | 0.00 | 41.35 | 3.35 |
2520 | 3370 | 0.034767 | CCAATTGGGCTCTGCTCAGA | 60.035 | 55.000 | 17.36 | 0.00 | 41.35 | 3.27 |
2521 | 3371 | 1.615116 | CCAATTGGGCTCTGCTCAGAA | 60.615 | 52.381 | 17.36 | 0.00 | 41.35 | 3.02 |
2522 | 3372 | 2.376109 | CAATTGGGCTCTGCTCAGAAT | 58.624 | 47.619 | 0.00 | 0.00 | 41.35 | 2.40 |
2523 | 3373 | 3.548770 | CAATTGGGCTCTGCTCAGAATA | 58.451 | 45.455 | 0.00 | 0.00 | 41.35 | 1.75 |
2524 | 3374 | 4.142790 | CAATTGGGCTCTGCTCAGAATAT | 58.857 | 43.478 | 0.00 | 0.00 | 41.35 | 1.28 |
2525 | 3375 | 5.311265 | CAATTGGGCTCTGCTCAGAATATA | 58.689 | 41.667 | 0.00 | 0.00 | 41.35 | 0.86 |
2526 | 3376 | 4.342862 | TTGGGCTCTGCTCAGAATATAC | 57.657 | 45.455 | 0.93 | 0.00 | 41.35 | 1.47 |
2527 | 3377 | 3.581101 | TGGGCTCTGCTCAGAATATACT | 58.419 | 45.455 | 0.93 | 0.00 | 32.27 | 2.12 |
2528 | 3378 | 3.969976 | TGGGCTCTGCTCAGAATATACTT | 59.030 | 43.478 | 0.93 | 0.00 | 32.27 | 2.24 |
2529 | 3379 | 4.410228 | TGGGCTCTGCTCAGAATATACTTT | 59.590 | 41.667 | 0.93 | 0.00 | 32.27 | 2.66 |
2530 | 3380 | 5.104360 | TGGGCTCTGCTCAGAATATACTTTT | 60.104 | 40.000 | 0.93 | 0.00 | 32.27 | 2.27 |
2531 | 3381 | 5.468409 | GGGCTCTGCTCAGAATATACTTTTC | 59.532 | 44.000 | 0.93 | 0.00 | 36.94 | 2.29 |
2532 | 3382 | 6.287525 | GGCTCTGCTCAGAATATACTTTTCT | 58.712 | 40.000 | 0.93 | 0.00 | 36.94 | 2.52 |
2534 | 3384 | 6.760770 | GCTCTGCTCAGAATATACTTTTCTGT | 59.239 | 38.462 | 12.22 | 0.00 | 46.54 | 3.41 |
2535 | 3385 | 7.042791 | GCTCTGCTCAGAATATACTTTTCTGTC | 60.043 | 40.741 | 12.22 | 7.86 | 46.54 | 3.51 |
2536 | 3386 | 7.840931 | TCTGCTCAGAATATACTTTTCTGTCA | 58.159 | 34.615 | 12.22 | 10.73 | 46.54 | 3.58 |
2537 | 3387 | 8.481314 | TCTGCTCAGAATATACTTTTCTGTCAT | 58.519 | 33.333 | 12.22 | 0.00 | 46.54 | 3.06 |
2538 | 3388 | 8.654230 | TGCTCAGAATATACTTTTCTGTCATC | 57.346 | 34.615 | 12.22 | 4.20 | 46.54 | 2.92 |
2539 | 3389 | 8.481314 | TGCTCAGAATATACTTTTCTGTCATCT | 58.519 | 33.333 | 12.22 | 0.00 | 46.54 | 2.90 |
2540 | 3390 | 9.323985 | GCTCAGAATATACTTTTCTGTCATCTT | 57.676 | 33.333 | 12.22 | 0.00 | 46.54 | 2.40 |
2619 | 3469 | 0.976641 | TACCTGAGTCCACTTGCCAG | 59.023 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2648 | 3498 | 3.775654 | GAGACCGGGGCTCAGGTG | 61.776 | 72.222 | 25.24 | 0.00 | 41.51 | 4.00 |
2709 | 3559 | 6.592870 | ACACCTAAATTATGCTACTTCCTCC | 58.407 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2710 | 3560 | 5.696724 | CACCTAAATTATGCTACTTCCTCCG | 59.303 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2711 | 3561 | 5.365895 | ACCTAAATTATGCTACTTCCTCCGT | 59.634 | 40.000 | 0.00 | 0.00 | 0.00 | 4.69 |
2712 | 3562 | 6.126854 | ACCTAAATTATGCTACTTCCTCCGTT | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 4.44 |
2713 | 3563 | 6.766467 | CCTAAATTATGCTACTTCCTCCGTTT | 59.234 | 38.462 | 0.00 | 0.00 | 0.00 | 3.60 |
2714 | 3564 | 6.679327 | AAATTATGCTACTTCCTCCGTTTC | 57.321 | 37.500 | 0.00 | 0.00 | 0.00 | 2.78 |
2715 | 3565 | 4.811969 | TTATGCTACTTCCTCCGTTTCA | 57.188 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
2716 | 3566 | 2.743636 | TGCTACTTCCTCCGTTTCAG | 57.256 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2717 | 3567 | 1.968493 | TGCTACTTCCTCCGTTTCAGT | 59.032 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
2718 | 3568 | 2.367567 | TGCTACTTCCTCCGTTTCAGTT | 59.632 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2719 | 3569 | 3.181458 | TGCTACTTCCTCCGTTTCAGTTT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
2720 | 3570 | 4.039488 | TGCTACTTCCTCCGTTTCAGTTTA | 59.961 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
2721 | 3571 | 4.388165 | GCTACTTCCTCCGTTTCAGTTTAC | 59.612 | 45.833 | 0.00 | 0.00 | 0.00 | 2.01 |
2722 | 3572 | 4.411256 | ACTTCCTCCGTTTCAGTTTACA | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
2723 | 3573 | 4.773013 | ACTTCCTCCGTTTCAGTTTACAA | 58.227 | 39.130 | 0.00 | 0.00 | 0.00 | 2.41 |
2724 | 3574 | 4.814771 | ACTTCCTCCGTTTCAGTTTACAAG | 59.185 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
2725 | 3575 | 4.411256 | TCCTCCGTTTCAGTTTACAAGT | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2726 | 3576 | 4.374399 | TCCTCCGTTTCAGTTTACAAGTC | 58.626 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2727 | 3577 | 3.497262 | CCTCCGTTTCAGTTTACAAGTCC | 59.503 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
2728 | 3578 | 4.377897 | CTCCGTTTCAGTTTACAAGTCCT | 58.622 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2729 | 3579 | 5.510179 | CCTCCGTTTCAGTTTACAAGTCCTA | 60.510 | 44.000 | 0.00 | 0.00 | 0.00 | 2.94 |
2730 | 3580 | 6.105397 | TCCGTTTCAGTTTACAAGTCCTAT | 57.895 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
2731 | 3581 | 5.929992 | TCCGTTTCAGTTTACAAGTCCTATG | 59.070 | 40.000 | 0.00 | 0.00 | 0.00 | 2.23 |
2732 | 3582 | 5.390567 | CCGTTTCAGTTTACAAGTCCTATGC | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2733 | 3583 | 5.178623 | CGTTTCAGTTTACAAGTCCTATGCA | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 3.96 |
2734 | 3584 | 6.128282 | CGTTTCAGTTTACAAGTCCTATGCAT | 60.128 | 38.462 | 3.79 | 3.79 | 0.00 | 3.96 |
2735 | 3585 | 7.064134 | CGTTTCAGTTTACAAGTCCTATGCATA | 59.936 | 37.037 | 6.20 | 6.20 | 0.00 | 3.14 |
2736 | 3586 | 8.893727 | GTTTCAGTTTACAAGTCCTATGCATAT | 58.106 | 33.333 | 6.92 | 0.00 | 0.00 | 1.78 |
2738 | 3588 | 9.542462 | TTCAGTTTACAAGTCCTATGCATATAC | 57.458 | 33.333 | 6.92 | 8.86 | 0.00 | 1.47 |
2739 | 3589 | 8.148351 | TCAGTTTACAAGTCCTATGCATATACC | 58.852 | 37.037 | 6.92 | 0.00 | 0.00 | 2.73 |
2740 | 3590 | 8.150945 | CAGTTTACAAGTCCTATGCATATACCT | 58.849 | 37.037 | 6.92 | 0.29 | 0.00 | 3.08 |
2741 | 3591 | 9.375974 | AGTTTACAAGTCCTATGCATATACCTA | 57.624 | 33.333 | 6.92 | 0.00 | 0.00 | 3.08 |
2742 | 3592 | 9.640963 | GTTTACAAGTCCTATGCATATACCTAG | 57.359 | 37.037 | 6.92 | 0.00 | 0.00 | 3.02 |
2743 | 3593 | 6.859112 | ACAAGTCCTATGCATATACCTAGG | 57.141 | 41.667 | 7.41 | 7.41 | 33.46 | 3.02 |
2744 | 3594 | 6.323737 | ACAAGTCCTATGCATATACCTAGGT | 58.676 | 40.000 | 20.57 | 20.57 | 33.81 | 3.08 |
2745 | 3595 | 6.787957 | ACAAGTCCTATGCATATACCTAGGTT | 59.212 | 38.462 | 22.11 | 10.62 | 33.81 | 3.50 |
2746 | 3596 | 6.859112 | AGTCCTATGCATATACCTAGGTTG | 57.141 | 41.667 | 22.11 | 13.87 | 33.81 | 3.77 |
2747 | 3597 | 6.323737 | AGTCCTATGCATATACCTAGGTTGT | 58.676 | 40.000 | 22.11 | 12.13 | 33.81 | 3.32 |
2748 | 3598 | 6.437793 | AGTCCTATGCATATACCTAGGTTGTC | 59.562 | 42.308 | 22.11 | 9.27 | 33.81 | 3.18 |
2749 | 3599 | 6.210784 | GTCCTATGCATATACCTAGGTTGTCA | 59.789 | 42.308 | 22.11 | 14.29 | 33.81 | 3.58 |
2750 | 3600 | 6.785466 | TCCTATGCATATACCTAGGTTGTCAA | 59.215 | 38.462 | 22.11 | 0.75 | 33.81 | 3.18 |
2751 | 3601 | 7.457852 | TCCTATGCATATACCTAGGTTGTCAAT | 59.542 | 37.037 | 22.11 | 9.64 | 33.81 | 2.57 |
2752 | 3602 | 8.103305 | CCTATGCATATACCTAGGTTGTCAATT | 58.897 | 37.037 | 22.11 | 3.83 | 0.00 | 2.32 |
2753 | 3603 | 9.507329 | CTATGCATATACCTAGGTTGTCAATTT | 57.493 | 33.333 | 22.11 | 0.00 | 0.00 | 1.82 |
2754 | 3604 | 8.766994 | ATGCATATACCTAGGTTGTCAATTTT | 57.233 | 30.769 | 22.11 | 0.00 | 0.00 | 1.82 |
2755 | 3605 | 9.860650 | ATGCATATACCTAGGTTGTCAATTTTA | 57.139 | 29.630 | 22.11 | 0.00 | 0.00 | 1.52 |
2756 | 3606 | 9.860650 | TGCATATACCTAGGTTGTCAATTTTAT | 57.139 | 29.630 | 22.11 | 5.71 | 0.00 | 1.40 |
2760 | 3610 | 8.747538 | ATACCTAGGTTGTCAATTTTATCACC | 57.252 | 34.615 | 22.11 | 0.00 | 0.00 | 4.02 |
2761 | 3611 | 6.790319 | ACCTAGGTTGTCAATTTTATCACCT | 58.210 | 36.000 | 9.21 | 0.00 | 0.00 | 4.00 |
2762 | 3612 | 7.924541 | ACCTAGGTTGTCAATTTTATCACCTA | 58.075 | 34.615 | 9.21 | 0.00 | 0.00 | 3.08 |
2763 | 3613 | 8.387813 | ACCTAGGTTGTCAATTTTATCACCTAA | 58.612 | 33.333 | 9.21 | 0.00 | 0.00 | 2.69 |
2764 | 3614 | 9.408648 | CCTAGGTTGTCAATTTTATCACCTAAT | 57.591 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
2867 | 3717 | 9.920946 | ATATGACTTGTATTAGGTTGGTCAAAT | 57.079 | 29.630 | 0.00 | 0.00 | 36.16 | 2.32 |
2868 | 3718 | 8.650143 | ATGACTTGTATTAGGTTGGTCAAATT | 57.350 | 30.769 | 0.00 | 0.00 | 36.16 | 1.82 |
2869 | 3719 | 7.881142 | TGACTTGTATTAGGTTGGTCAAATTG | 58.119 | 34.615 | 0.00 | 0.00 | 30.81 | 2.32 |
2870 | 3720 | 7.721842 | TGACTTGTATTAGGTTGGTCAAATTGA | 59.278 | 33.333 | 0.00 | 0.00 | 30.81 | 2.57 |
2871 | 3721 | 7.882179 | ACTTGTATTAGGTTGGTCAAATTGAC | 58.118 | 34.615 | 17.16 | 17.16 | 46.23 | 3.18 |
2884 | 3734 | 6.237313 | GTCAAATTGACAACCTAGTGGTAC | 57.763 | 41.667 | 20.08 | 0.00 | 46.22 | 3.34 |
2885 | 3735 | 5.107220 | GTCAAATTGACAACCTAGTGGTACG | 60.107 | 44.000 | 20.08 | 0.00 | 46.22 | 3.67 |
2886 | 3736 | 8.466465 | GTCAAATTGACAACCTAGTGGTACGC | 62.466 | 46.154 | 20.08 | 0.00 | 46.22 | 4.42 |
2890 | 3740 | 2.570181 | ACCTAGTGGTACGCGCAC | 59.430 | 61.111 | 5.73 | 2.26 | 46.43 | 5.34 |
2891 | 3741 | 3.332493 | ACCTAGTGGTACGCGCACG | 62.332 | 63.158 | 5.73 | 0.00 | 46.43 | 5.34 |
2901 | 3751 | 2.468532 | CGCGCACGTCCTGTAAAC | 59.531 | 61.111 | 8.75 | 0.00 | 33.53 | 2.01 |
2902 | 3752 | 2.019951 | CGCGCACGTCCTGTAAACT | 61.020 | 57.895 | 8.75 | 0.00 | 33.53 | 2.66 |
2903 | 3753 | 1.491563 | GCGCACGTCCTGTAAACTG | 59.508 | 57.895 | 0.30 | 0.00 | 0.00 | 3.16 |
2904 | 3754 | 0.942410 | GCGCACGTCCTGTAAACTGA | 60.942 | 55.000 | 0.30 | 0.00 | 0.00 | 3.41 |
2905 | 3755 | 1.060713 | CGCACGTCCTGTAAACTGAG | 58.939 | 55.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2906 | 3756 | 1.335597 | CGCACGTCCTGTAAACTGAGA | 60.336 | 52.381 | 0.00 | 0.00 | 0.00 | 3.27 |
2907 | 3757 | 2.329379 | GCACGTCCTGTAAACTGAGAG | 58.671 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
2908 | 3758 | 2.030185 | GCACGTCCTGTAAACTGAGAGA | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2909 | 3759 | 3.827625 | CACGTCCTGTAAACTGAGAGAG | 58.172 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2910 | 3760 | 3.502595 | CACGTCCTGTAAACTGAGAGAGA | 59.497 | 47.826 | 0.00 | 0.00 | 0.00 | 3.10 |
2911 | 3761 | 3.754323 | ACGTCCTGTAAACTGAGAGAGAG | 59.246 | 47.826 | 0.00 | 0.00 | 0.00 | 3.20 |
2912 | 3762 | 3.127895 | CGTCCTGTAAACTGAGAGAGAGG | 59.872 | 52.174 | 0.00 | 0.00 | 0.00 | 3.69 |
2913 | 3763 | 3.445805 | GTCCTGTAAACTGAGAGAGAGGG | 59.554 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2914 | 3764 | 3.333980 | TCCTGTAAACTGAGAGAGAGGGA | 59.666 | 47.826 | 0.00 | 0.00 | 0.00 | 4.20 |
2915 | 3765 | 3.699038 | CCTGTAAACTGAGAGAGAGGGAG | 59.301 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
2916 | 3766 | 4.340617 | CTGTAAACTGAGAGAGAGGGAGT | 58.659 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
2917 | 3767 | 5.502079 | CTGTAAACTGAGAGAGAGGGAGTA | 58.498 | 45.833 | 0.00 | 0.00 | 0.00 | 2.59 |
2987 | 3837 | 9.394767 | ACTTTGCATACATGTTGAGAATATGTA | 57.605 | 29.630 | 2.30 | 7.95 | 45.43 | 2.29 |
2999 | 3849 | 9.502091 | TGTTGAGAATATGTATAGGTATTTGCC | 57.498 | 33.333 | 0.00 | 0.00 | 0.00 | 4.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
75 | 76 | 4.081752 | AGCTCAGTGATTTACTCAGGTGAG | 60.082 | 45.833 | 5.40 | 5.40 | 36.84 | 3.51 |
76 | 77 | 3.834813 | AGCTCAGTGATTTACTCAGGTGA | 59.165 | 43.478 | 0.00 | 0.00 | 36.84 | 4.02 |
131 | 132 | 2.434336 | TCGAATGGTTCTATCTGGTGGG | 59.566 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
877 | 884 | 0.818938 | TTATAGGCACGACGAGGCAA | 59.181 | 50.000 | 19.99 | 4.04 | 0.00 | 4.52 |
878 | 885 | 0.384309 | CTTATAGGCACGACGAGGCA | 59.616 | 55.000 | 19.99 | 7.40 | 0.00 | 4.75 |
931 | 946 | 2.362397 | TCTCTCTCTCTCTCTCTCTCGC | 59.638 | 54.545 | 0.00 | 0.00 | 0.00 | 5.03 |
949 | 964 | 1.148273 | TTGTGTGGGTGTGCCTCTC | 59.852 | 57.895 | 0.00 | 0.00 | 34.45 | 3.20 |
950 | 965 | 1.152963 | GTTGTGTGGGTGTGCCTCT | 60.153 | 57.895 | 0.00 | 0.00 | 34.45 | 3.69 |
977 | 992 | 0.610232 | AAACCCTGGATGCTCAGTGC | 60.610 | 55.000 | 0.00 | 0.00 | 43.25 | 4.40 |
991 | 1006 | 4.758251 | GCCGGCCATTGCAAACCC | 62.758 | 66.667 | 18.11 | 3.13 | 40.13 | 4.11 |
994 | 1009 | 4.376176 | GCAGCCGGCCATTGCAAA | 62.376 | 61.111 | 28.49 | 0.00 | 40.13 | 3.68 |
1125 | 1140 | 2.831526 | AGAGCAGAGGAGGAAAGAAGTC | 59.168 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1129 | 1144 | 1.360852 | AGGAGAGCAGAGGAGGAAAGA | 59.639 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
1167 | 1187 | 5.450592 | TCATCTAGCATAGCAGAACAGAG | 57.549 | 43.478 | 0.00 | 0.00 | 38.99 | 3.35 |
1234 | 1264 | 9.830975 | AGCACATTTATTTATCCAATTTAACCC | 57.169 | 29.630 | 0.00 | 0.00 | 0.00 | 4.11 |
1379 | 1413 | 1.699730 | TTGAACAGACGTCCAGAGGA | 58.300 | 50.000 | 13.01 | 0.00 | 0.00 | 3.71 |
1380 | 1414 | 2.751166 | ATTGAACAGACGTCCAGAGG | 57.249 | 50.000 | 13.01 | 0.00 | 0.00 | 3.69 |
1381 | 1415 | 2.996621 | GGAATTGAACAGACGTCCAGAG | 59.003 | 50.000 | 13.01 | 2.53 | 0.00 | 3.35 |
1382 | 1416 | 2.367241 | TGGAATTGAACAGACGTCCAGA | 59.633 | 45.455 | 13.01 | 0.00 | 31.61 | 3.86 |
1383 | 1417 | 2.766313 | TGGAATTGAACAGACGTCCAG | 58.234 | 47.619 | 13.01 | 8.07 | 31.61 | 3.86 |
1384 | 1418 | 2.875933 | GTTGGAATTGAACAGACGTCCA | 59.124 | 45.455 | 13.01 | 0.00 | 33.39 | 4.02 |
1396 | 1430 | 3.904136 | AGAAGCTCAACGTTGGAATTG | 57.096 | 42.857 | 27.02 | 13.40 | 0.00 | 2.32 |
1418 | 1452 | 0.603569 | AGCCTCGCATTCTATACGGG | 59.396 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
1424 | 1458 | 1.372582 | CAGCAAAGCCTCGCATTCTA | 58.627 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1425 | 1459 | 1.930908 | GCAGCAAAGCCTCGCATTCT | 61.931 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1431 | 1465 | 1.594862 | GTATACTGCAGCAAAGCCTCG | 59.405 | 52.381 | 15.27 | 0.00 | 0.00 | 4.63 |
1604 | 1647 | 4.081030 | CATCGCCATCGCCATCGC | 62.081 | 66.667 | 0.00 | 0.00 | 35.26 | 4.58 |
1605 | 1648 | 2.356194 | TCATCGCCATCGCCATCG | 60.356 | 61.111 | 0.00 | 0.00 | 35.26 | 3.84 |
1606 | 1649 | 2.661566 | CGTCATCGCCATCGCCATC | 61.662 | 63.158 | 0.00 | 0.00 | 35.26 | 3.51 |
1607 | 1650 | 2.662857 | CGTCATCGCCATCGCCAT | 60.663 | 61.111 | 0.00 | 0.00 | 35.26 | 4.40 |
1608 | 1651 | 3.773262 | CTCGTCATCGCCATCGCCA | 62.773 | 63.158 | 0.00 | 0.00 | 36.96 | 5.69 |
1609 | 1652 | 3.032609 | CTCGTCATCGCCATCGCC | 61.033 | 66.667 | 0.00 | 0.00 | 36.96 | 5.54 |
1671 | 1714 | 6.019479 | GGACGGACGTCGGTATATTATAGTAG | 60.019 | 46.154 | 26.26 | 0.00 | 45.41 | 2.57 |
1672 | 1715 | 5.810587 | GGACGGACGTCGGTATATTATAGTA | 59.189 | 44.000 | 26.26 | 0.00 | 45.41 | 1.82 |
1673 | 1716 | 4.631813 | GGACGGACGTCGGTATATTATAGT | 59.368 | 45.833 | 26.26 | 2.21 | 45.41 | 2.12 |
1674 | 1717 | 4.034510 | GGGACGGACGTCGGTATATTATAG | 59.965 | 50.000 | 26.26 | 1.49 | 45.41 | 1.31 |
1756 | 1800 | 1.274703 | GCCTCCAGGATGTCTCCCAA | 61.275 | 60.000 | 0.00 | 0.00 | 43.21 | 4.12 |
1858 | 1920 | 7.385778 | TGGTGGTGAACAATAAATAAGTAGC | 57.614 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1887 | 1954 | 1.382009 | TTCCTGCATGGCATGGCAT | 60.382 | 52.632 | 27.75 | 27.75 | 39.65 | 4.40 |
1888 | 1955 | 2.037527 | TTCCTGCATGGCATGGCA | 59.962 | 55.556 | 27.48 | 25.52 | 38.13 | 4.92 |
1889 | 1956 | 1.755395 | TCTTCCTGCATGGCATGGC | 60.755 | 57.895 | 27.48 | 19.51 | 38.13 | 4.40 |
1890 | 1957 | 1.721664 | CGTCTTCCTGCATGGCATGG | 61.722 | 60.000 | 27.48 | 12.53 | 38.13 | 3.66 |
1891 | 1958 | 1.721664 | CCGTCTTCCTGCATGGCATG | 61.722 | 60.000 | 22.99 | 22.99 | 38.13 | 4.06 |
2024 | 2091 | 1.927895 | CTACTACTTCTTGCCGGCAG | 58.072 | 55.000 | 30.75 | 22.76 | 0.00 | 4.85 |
2076 | 2143 | 4.782252 | TCTTTTAGAAACAACACGACGG | 57.218 | 40.909 | 0.00 | 0.00 | 0.00 | 4.79 |
2153 | 2220 | 2.200067 | CGTGGAGATGCTCTTGATCAC | 58.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.06 |
2157 | 2224 | 0.820226 | CTCCGTGGAGATGCTCTTGA | 59.180 | 55.000 | 10.50 | 0.00 | 44.53 | 3.02 |
2158 | 2225 | 0.179089 | CCTCCGTGGAGATGCTCTTG | 60.179 | 60.000 | 17.52 | 0.00 | 44.53 | 3.02 |
2171 | 2238 | 3.453679 | GCCTCTCTTCGCCTCCGT | 61.454 | 66.667 | 0.00 | 0.00 | 35.54 | 4.69 |
2191 | 2258 | 4.207165 | AGATTCAACATTAATCCGGGTGG | 58.793 | 43.478 | 0.00 | 0.00 | 34.50 | 4.61 |
2197 | 2264 | 7.806960 | GCTATGCTGAAGATTCAACATTAATCC | 59.193 | 37.037 | 14.66 | 0.17 | 40.09 | 3.01 |
2210 | 2277 | 4.222336 | AGTGACTAGGCTATGCTGAAGAT | 58.778 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
2249 | 2323 | 6.496338 | AATCCAAGACAAGTAATTCGGAAC | 57.504 | 37.500 | 0.00 | 0.00 | 0.00 | 3.62 |
2250 | 2324 | 6.488683 | ACAAATCCAAGACAAGTAATTCGGAA | 59.511 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
2251 | 2325 | 6.001460 | ACAAATCCAAGACAAGTAATTCGGA | 58.999 | 36.000 | 0.00 | 0.00 | 0.00 | 4.55 |
2252 | 2326 | 6.149474 | AGACAAATCCAAGACAAGTAATTCGG | 59.851 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2253 | 2327 | 7.133891 | AGACAAATCCAAGACAAGTAATTCG | 57.866 | 36.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2254 | 2328 | 9.436957 | TCTAGACAAATCCAAGACAAGTAATTC | 57.563 | 33.333 | 0.00 | 0.00 | 0.00 | 2.17 |
2255 | 2329 | 9.965902 | ATCTAGACAAATCCAAGACAAGTAATT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2257 | 2331 | 9.871238 | GTATCTAGACAAATCCAAGACAAGTAA | 57.129 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2258 | 2332 | 8.188799 | CGTATCTAGACAAATCCAAGACAAGTA | 58.811 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2259 | 2333 | 7.036220 | CGTATCTAGACAAATCCAAGACAAGT | 58.964 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2260 | 2334 | 6.477033 | CCGTATCTAGACAAATCCAAGACAAG | 59.523 | 42.308 | 0.00 | 0.00 | 0.00 | 3.16 |
2261 | 2335 | 6.153851 | TCCGTATCTAGACAAATCCAAGACAA | 59.846 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2262 | 2336 | 5.655090 | TCCGTATCTAGACAAATCCAAGACA | 59.345 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2263 | 2337 | 6.145338 | TCCGTATCTAGACAAATCCAAGAC | 57.855 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2264 | 2338 | 6.323996 | ACATCCGTATCTAGACAAATCCAAGA | 59.676 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
2265 | 2339 | 6.516718 | ACATCCGTATCTAGACAAATCCAAG | 58.483 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2266 | 2340 | 6.479972 | ACATCCGTATCTAGACAAATCCAA | 57.520 | 37.500 | 0.00 | 0.00 | 0.00 | 3.53 |
2267 | 2341 | 7.776618 | ATACATCCGTATCTAGACAAATCCA | 57.223 | 36.000 | 0.00 | 0.00 | 32.66 | 3.41 |
2281 | 2355 | 9.570468 | ACTAAAATGAGTCTAGATACATCCGTA | 57.430 | 33.333 | 12.66 | 6.93 | 0.00 | 4.02 |
2282 | 2356 | 8.353684 | CACTAAAATGAGTCTAGATACATCCGT | 58.646 | 37.037 | 12.66 | 7.10 | 0.00 | 4.69 |
2283 | 2357 | 8.353684 | ACACTAAAATGAGTCTAGATACATCCG | 58.646 | 37.037 | 12.66 | 6.68 | 0.00 | 4.18 |
2294 | 2368 | 8.697292 | GGAGGTATCTAACACTAAAATGAGTCT | 58.303 | 37.037 | 0.00 | 0.00 | 0.00 | 3.24 |
2295 | 2369 | 7.648510 | CGGAGGTATCTAACACTAAAATGAGTC | 59.351 | 40.741 | 0.00 | 0.00 | 0.00 | 3.36 |
2296 | 2370 | 7.123847 | ACGGAGGTATCTAACACTAAAATGAGT | 59.876 | 37.037 | 0.00 | 0.00 | 0.00 | 3.41 |
2297 | 2371 | 7.490000 | ACGGAGGTATCTAACACTAAAATGAG | 58.510 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2298 | 2372 | 7.414222 | ACGGAGGTATCTAACACTAAAATGA | 57.586 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2313 | 2387 | 9.233649 | CTTAGATTTGTCTAGATACGGAGGTAT | 57.766 | 37.037 | 0.00 | 0.00 | 42.01 | 2.73 |
2314 | 2388 | 8.435187 | TCTTAGATTTGTCTAGATACGGAGGTA | 58.565 | 37.037 | 0.00 | 0.00 | 0.00 | 3.08 |
2315 | 2389 | 7.229106 | GTCTTAGATTTGTCTAGATACGGAGGT | 59.771 | 40.741 | 0.00 | 0.00 | 0.00 | 3.85 |
2316 | 2390 | 7.228906 | TGTCTTAGATTTGTCTAGATACGGAGG | 59.771 | 40.741 | 0.00 | 0.00 | 0.00 | 4.30 |
2317 | 2391 | 8.155821 | TGTCTTAGATTTGTCTAGATACGGAG | 57.844 | 38.462 | 0.00 | 0.00 | 0.00 | 4.63 |
2318 | 2392 | 8.515695 | TTGTCTTAGATTTGTCTAGATACGGA | 57.484 | 34.615 | 0.00 | 0.00 | 0.00 | 4.69 |
2319 | 2393 | 8.407064 | ACTTGTCTTAGATTTGTCTAGATACGG | 58.593 | 37.037 | 0.00 | 0.00 | 0.00 | 4.02 |
2326 | 2400 | 9.582431 | CCGAATTACTTGTCTTAGATTTGTCTA | 57.418 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
2327 | 2401 | 8.311836 | TCCGAATTACTTGTCTTAGATTTGTCT | 58.688 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2328 | 2402 | 8.475331 | TCCGAATTACTTGTCTTAGATTTGTC | 57.525 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2329 | 2403 | 8.718734 | GTTCCGAATTACTTGTCTTAGATTTGT | 58.281 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
2330 | 2404 | 7.898309 | CGTTCCGAATTACTTGTCTTAGATTTG | 59.102 | 37.037 | 0.00 | 0.00 | 0.00 | 2.32 |
2331 | 2405 | 7.064253 | CCGTTCCGAATTACTTGTCTTAGATTT | 59.936 | 37.037 | 0.00 | 0.00 | 0.00 | 2.17 |
2332 | 2406 | 6.534079 | CCGTTCCGAATTACTTGTCTTAGATT | 59.466 | 38.462 | 0.00 | 0.00 | 0.00 | 2.40 |
2333 | 2407 | 6.040878 | CCGTTCCGAATTACTTGTCTTAGAT | 58.959 | 40.000 | 0.00 | 0.00 | 0.00 | 1.98 |
2334 | 2408 | 5.183713 | TCCGTTCCGAATTACTTGTCTTAGA | 59.816 | 40.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2335 | 2409 | 5.404946 | TCCGTTCCGAATTACTTGTCTTAG | 58.595 | 41.667 | 0.00 | 0.00 | 0.00 | 2.18 |
2336 | 2410 | 5.389859 | TCCGTTCCGAATTACTTGTCTTA | 57.610 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2337 | 2411 | 4.243270 | CTCCGTTCCGAATTACTTGTCTT | 58.757 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2338 | 2412 | 3.368116 | CCTCCGTTCCGAATTACTTGTCT | 60.368 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
2339 | 2413 | 2.928116 | CCTCCGTTCCGAATTACTTGTC | 59.072 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2340 | 2414 | 2.354403 | CCCTCCGTTCCGAATTACTTGT | 60.354 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2341 | 2415 | 2.093869 | TCCCTCCGTTCCGAATTACTTG | 60.094 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2342 | 2416 | 2.167900 | CTCCCTCCGTTCCGAATTACTT | 59.832 | 50.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2343 | 2417 | 1.755380 | CTCCCTCCGTTCCGAATTACT | 59.245 | 52.381 | 0.00 | 0.00 | 0.00 | 2.24 |
2344 | 2418 | 1.479730 | ACTCCCTCCGTTCCGAATTAC | 59.520 | 52.381 | 0.00 | 0.00 | 0.00 | 1.89 |
2345 | 2419 | 1.856629 | ACTCCCTCCGTTCCGAATTA | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
2346 | 2420 | 1.856629 | TACTCCCTCCGTTCCGAATT | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
2347 | 2421 | 2.083628 | ATACTCCCTCCGTTCCGAAT | 57.916 | 50.000 | 0.00 | 0.00 | 0.00 | 3.34 |
2348 | 2422 | 1.856629 | AATACTCCCTCCGTTCCGAA | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2349 | 2423 | 1.856629 | AAATACTCCCTCCGTTCCGA | 58.143 | 50.000 | 0.00 | 0.00 | 0.00 | 4.55 |
2350 | 2424 | 4.332428 | AATAAATACTCCCTCCGTTCCG | 57.668 | 45.455 | 0.00 | 0.00 | 0.00 | 4.30 |
2351 | 2425 | 6.709397 | CCTTAAATAAATACTCCCTCCGTTCC | 59.291 | 42.308 | 0.00 | 0.00 | 0.00 | 3.62 |
2352 | 2426 | 7.226128 | CACCTTAAATAAATACTCCCTCCGTTC | 59.774 | 40.741 | 0.00 | 0.00 | 0.00 | 3.95 |
2353 | 2427 | 7.052248 | CACCTTAAATAAATACTCCCTCCGTT | 58.948 | 38.462 | 0.00 | 0.00 | 0.00 | 4.44 |
2354 | 2428 | 6.408891 | CCACCTTAAATAAATACTCCCTCCGT | 60.409 | 42.308 | 0.00 | 0.00 | 0.00 | 4.69 |
2355 | 2429 | 5.995897 | CCACCTTAAATAAATACTCCCTCCG | 59.004 | 44.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2356 | 2430 | 5.768662 | GCCACCTTAAATAAATACTCCCTCC | 59.231 | 44.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2357 | 2431 | 6.362248 | TGCCACCTTAAATAAATACTCCCTC | 58.638 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2358 | 2432 | 6.335781 | TGCCACCTTAAATAAATACTCCCT | 57.664 | 37.500 | 0.00 | 0.00 | 0.00 | 4.20 |
2359 | 2433 | 6.015434 | CCATGCCACCTTAAATAAATACTCCC | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2360 | 2434 | 6.015434 | CCCATGCCACCTTAAATAAATACTCC | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 3.85 |
2361 | 2435 | 6.015434 | CCCCATGCCACCTTAAATAAATACTC | 60.015 | 42.308 | 0.00 | 0.00 | 0.00 | 2.59 |
2362 | 2436 | 5.838521 | CCCCATGCCACCTTAAATAAATACT | 59.161 | 40.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2363 | 2437 | 5.836358 | TCCCCATGCCACCTTAAATAAATAC | 59.164 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2364 | 2438 | 6.031964 | TCCCCATGCCACCTTAAATAAATA | 57.968 | 37.500 | 0.00 | 0.00 | 0.00 | 1.40 |
2421 | 2495 | 4.916983 | AAGCAGTAGCACAAATCACAAA | 57.083 | 36.364 | 0.00 | 0.00 | 45.49 | 2.83 |
2433 | 2507 | 2.095768 | TCAATTCACGCAAAGCAGTAGC | 60.096 | 45.455 | 0.00 | 0.00 | 42.56 | 3.58 |
2439 | 2518 | 6.393720 | AATGTTATTCAATTCACGCAAAGC | 57.606 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
2552 | 3402 | 8.883302 | AGCCCAATTGGAATAATTGCTTATATT | 58.117 | 29.630 | 26.60 | 0.00 | 36.56 | 1.28 |
2553 | 3403 | 8.439964 | AGCCCAATTGGAATAATTGCTTATAT | 57.560 | 30.769 | 26.60 | 0.00 | 36.56 | 0.86 |
2554 | 3404 | 7.729881 | AGAGCCCAATTGGAATAATTGCTTATA | 59.270 | 33.333 | 26.60 | 0.00 | 36.56 | 0.98 |
2555 | 3405 | 6.556116 | AGAGCCCAATTGGAATAATTGCTTAT | 59.444 | 34.615 | 26.60 | 12.78 | 36.56 | 1.73 |
2556 | 3406 | 5.898972 | AGAGCCCAATTGGAATAATTGCTTA | 59.101 | 36.000 | 26.60 | 0.00 | 36.56 | 3.09 |
2557 | 3407 | 4.718276 | AGAGCCCAATTGGAATAATTGCTT | 59.282 | 37.500 | 26.60 | 11.05 | 36.56 | 3.91 |
2558 | 3408 | 4.100498 | CAGAGCCCAATTGGAATAATTGCT | 59.900 | 41.667 | 26.60 | 21.94 | 36.56 | 3.91 |
2559 | 3409 | 4.374399 | CAGAGCCCAATTGGAATAATTGC | 58.626 | 43.478 | 26.60 | 17.64 | 36.56 | 3.56 |
2560 | 3410 | 4.100498 | AGCAGAGCCCAATTGGAATAATTG | 59.900 | 41.667 | 26.60 | 15.58 | 37.39 | 2.32 |
2561 | 3411 | 4.292643 | AGCAGAGCCCAATTGGAATAATT | 58.707 | 39.130 | 26.60 | 4.20 | 37.39 | 1.40 |
2562 | 3412 | 3.893813 | GAGCAGAGCCCAATTGGAATAAT | 59.106 | 43.478 | 26.60 | 6.32 | 37.39 | 1.28 |
2563 | 3413 | 3.290710 | GAGCAGAGCCCAATTGGAATAA | 58.709 | 45.455 | 26.60 | 0.00 | 37.39 | 1.40 |
2564 | 3414 | 2.241941 | TGAGCAGAGCCCAATTGGAATA | 59.758 | 45.455 | 26.60 | 0.00 | 37.39 | 1.75 |
2565 | 3415 | 1.006281 | TGAGCAGAGCCCAATTGGAAT | 59.994 | 47.619 | 26.60 | 13.47 | 37.39 | 3.01 |
2566 | 3416 | 0.405198 | TGAGCAGAGCCCAATTGGAA | 59.595 | 50.000 | 26.60 | 0.00 | 37.39 | 3.53 |
2567 | 3417 | 0.034767 | CTGAGCAGAGCCCAATTGGA | 60.035 | 55.000 | 26.60 | 1.07 | 37.39 | 3.53 |
2568 | 3418 | 0.034767 | TCTGAGCAGAGCCCAATTGG | 60.035 | 55.000 | 18.21 | 18.21 | 32.82 | 3.16 |
2569 | 3419 | 1.830279 | TTCTGAGCAGAGCCCAATTG | 58.170 | 50.000 | 0.00 | 0.00 | 38.88 | 2.32 |
2570 | 3420 | 2.822707 | ATTCTGAGCAGAGCCCAATT | 57.177 | 45.000 | 0.00 | 0.00 | 38.88 | 2.32 |
2571 | 3421 | 4.596643 | AGTATATTCTGAGCAGAGCCCAAT | 59.403 | 41.667 | 0.00 | 0.00 | 38.88 | 3.16 |
2572 | 3422 | 3.969976 | AGTATATTCTGAGCAGAGCCCAA | 59.030 | 43.478 | 0.00 | 0.00 | 38.88 | 4.12 |
2573 | 3423 | 3.581101 | AGTATATTCTGAGCAGAGCCCA | 58.419 | 45.455 | 0.00 | 0.00 | 38.88 | 5.36 |
2574 | 3424 | 4.615588 | AAGTATATTCTGAGCAGAGCCC | 57.384 | 45.455 | 0.00 | 0.00 | 38.88 | 5.19 |
2575 | 3425 | 6.051717 | TCAAAAGTATATTCTGAGCAGAGCC | 58.948 | 40.000 | 0.00 | 0.00 | 38.88 | 4.70 |
2576 | 3426 | 7.727331 | ATCAAAAGTATATTCTGAGCAGAGC | 57.273 | 36.000 | 0.00 | 0.00 | 38.88 | 4.09 |
2648 | 3498 | 4.875561 | TTGTTGGTAAACATAAAGGGCC | 57.124 | 40.909 | 0.00 | 0.00 | 45.54 | 5.80 |
2684 | 3534 | 7.470981 | CGGAGGAAGTAGCATAATTTAGGTGTA | 60.471 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
2685 | 3535 | 6.592870 | GGAGGAAGTAGCATAATTTAGGTGT | 58.407 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
2702 | 3552 | 4.814771 | ACTTGTAAACTGAAACGGAGGAAG | 59.185 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
2703 | 3553 | 4.773013 | ACTTGTAAACTGAAACGGAGGAA | 58.227 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2704 | 3554 | 4.374399 | GACTTGTAAACTGAAACGGAGGA | 58.626 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
2705 | 3555 | 3.497262 | GGACTTGTAAACTGAAACGGAGG | 59.503 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
2706 | 3556 | 4.377897 | AGGACTTGTAAACTGAAACGGAG | 58.622 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
2707 | 3557 | 4.411256 | AGGACTTGTAAACTGAAACGGA | 57.589 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
2708 | 3558 | 5.390567 | GCATAGGACTTGTAAACTGAAACGG | 60.391 | 44.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2709 | 3559 | 5.178623 | TGCATAGGACTTGTAAACTGAAACG | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 3.60 |
2710 | 3560 | 6.554334 | TGCATAGGACTTGTAAACTGAAAC | 57.446 | 37.500 | 0.00 | 0.00 | 0.00 | 2.78 |
2712 | 3562 | 9.542462 | GTATATGCATAGGACTTGTAAACTGAA | 57.458 | 33.333 | 12.79 | 0.00 | 0.00 | 3.02 |
2713 | 3563 | 8.148351 | GGTATATGCATAGGACTTGTAAACTGA | 58.852 | 37.037 | 12.79 | 0.00 | 0.00 | 3.41 |
2714 | 3564 | 8.150945 | AGGTATATGCATAGGACTTGTAAACTG | 58.849 | 37.037 | 12.79 | 0.00 | 0.00 | 3.16 |
2715 | 3565 | 8.263854 | AGGTATATGCATAGGACTTGTAAACT | 57.736 | 34.615 | 12.79 | 1.56 | 0.00 | 2.66 |
2716 | 3566 | 9.640963 | CTAGGTATATGCATAGGACTTGTAAAC | 57.359 | 37.037 | 12.79 | 0.00 | 0.00 | 2.01 |
2717 | 3567 | 8.812972 | CCTAGGTATATGCATAGGACTTGTAAA | 58.187 | 37.037 | 22.58 | 0.00 | 43.40 | 2.01 |
2718 | 3568 | 7.954056 | ACCTAGGTATATGCATAGGACTTGTAA | 59.046 | 37.037 | 30.44 | 0.00 | 43.40 | 2.41 |
2719 | 3569 | 7.476153 | ACCTAGGTATATGCATAGGACTTGTA | 58.524 | 38.462 | 30.44 | 7.75 | 43.40 | 2.41 |
2720 | 3570 | 6.323737 | ACCTAGGTATATGCATAGGACTTGT | 58.676 | 40.000 | 30.44 | 11.08 | 43.40 | 3.16 |
2721 | 3571 | 6.859112 | ACCTAGGTATATGCATAGGACTTG | 57.141 | 41.667 | 30.44 | 10.30 | 43.40 | 3.16 |
2722 | 3572 | 6.787957 | ACAACCTAGGTATATGCATAGGACTT | 59.212 | 38.462 | 30.44 | 16.70 | 43.40 | 3.01 |
2723 | 3573 | 6.323737 | ACAACCTAGGTATATGCATAGGACT | 58.676 | 40.000 | 30.44 | 17.58 | 43.40 | 3.85 |
2724 | 3574 | 6.210784 | TGACAACCTAGGTATATGCATAGGAC | 59.789 | 42.308 | 30.44 | 19.72 | 43.40 | 3.85 |
2725 | 3575 | 6.319715 | TGACAACCTAGGTATATGCATAGGA | 58.680 | 40.000 | 30.44 | 11.08 | 43.40 | 2.94 |
2726 | 3576 | 6.605471 | TGACAACCTAGGTATATGCATAGG | 57.395 | 41.667 | 24.50 | 24.50 | 45.42 | 2.57 |
2727 | 3577 | 9.507329 | AAATTGACAACCTAGGTATATGCATAG | 57.493 | 33.333 | 16.67 | 5.61 | 0.00 | 2.23 |
2728 | 3578 | 9.860650 | AAAATTGACAACCTAGGTATATGCATA | 57.139 | 29.630 | 16.67 | 9.27 | 0.00 | 3.14 |
2729 | 3579 | 8.766994 | AAAATTGACAACCTAGGTATATGCAT | 57.233 | 30.769 | 16.67 | 3.79 | 0.00 | 3.96 |
2730 | 3580 | 9.860650 | ATAAAATTGACAACCTAGGTATATGCA | 57.139 | 29.630 | 16.67 | 9.57 | 0.00 | 3.96 |
2734 | 3584 | 9.841295 | GGTGATAAAATTGACAACCTAGGTATA | 57.159 | 33.333 | 16.67 | 0.00 | 0.00 | 1.47 |
2735 | 3585 | 8.557450 | AGGTGATAAAATTGACAACCTAGGTAT | 58.443 | 33.333 | 16.67 | 6.57 | 0.00 | 2.73 |
2736 | 3586 | 7.924541 | AGGTGATAAAATTGACAACCTAGGTA | 58.075 | 34.615 | 16.67 | 0.00 | 0.00 | 3.08 |
2737 | 3587 | 6.790319 | AGGTGATAAAATTGACAACCTAGGT | 58.210 | 36.000 | 9.21 | 9.21 | 0.00 | 3.08 |
2738 | 3588 | 8.801882 | TTAGGTGATAAAATTGACAACCTAGG | 57.198 | 34.615 | 7.41 | 7.41 | 0.00 | 3.02 |
2841 | 3691 | 9.920946 | ATTTGACCAACCTAATACAAGTCATAT | 57.079 | 29.630 | 0.00 | 0.00 | 33.21 | 1.78 |
2842 | 3692 | 9.747898 | AATTTGACCAACCTAATACAAGTCATA | 57.252 | 29.630 | 0.00 | 0.00 | 33.21 | 2.15 |
2843 | 3693 | 8.522830 | CAATTTGACCAACCTAATACAAGTCAT | 58.477 | 33.333 | 0.00 | 0.00 | 33.21 | 3.06 |
2844 | 3694 | 7.721842 | TCAATTTGACCAACCTAATACAAGTCA | 59.278 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
2845 | 3695 | 8.021396 | GTCAATTTGACCAACCTAATACAAGTC | 58.979 | 37.037 | 17.07 | 0.00 | 41.37 | 3.01 |
2846 | 3696 | 7.504238 | TGTCAATTTGACCAACCTAATACAAGT | 59.496 | 33.333 | 23.22 | 0.00 | 46.40 | 3.16 |
2847 | 3697 | 7.881142 | TGTCAATTTGACCAACCTAATACAAG | 58.119 | 34.615 | 23.22 | 0.00 | 46.40 | 3.16 |
2848 | 3698 | 7.825331 | TGTCAATTTGACCAACCTAATACAA | 57.175 | 32.000 | 23.22 | 1.00 | 46.40 | 2.41 |
2849 | 3699 | 7.255660 | GGTTGTCAATTTGACCAACCTAATACA | 60.256 | 37.037 | 31.01 | 12.53 | 46.40 | 2.29 |
2850 | 3700 | 7.088272 | GGTTGTCAATTTGACCAACCTAATAC | 58.912 | 38.462 | 31.01 | 17.94 | 46.40 | 1.89 |
2851 | 3701 | 7.222000 | GGTTGTCAATTTGACCAACCTAATA | 57.778 | 36.000 | 31.01 | 12.97 | 46.40 | 0.98 |
2852 | 3702 | 6.096673 | GGTTGTCAATTTGACCAACCTAAT | 57.903 | 37.500 | 31.01 | 0.00 | 46.40 | 1.73 |
2853 | 3703 | 5.523438 | GGTTGTCAATTTGACCAACCTAA | 57.477 | 39.130 | 31.01 | 17.90 | 46.40 | 2.69 |
2856 | 3706 | 4.583073 | ACTAGGTTGTCAATTTGACCAACC | 59.417 | 41.667 | 31.10 | 31.10 | 46.40 | 3.77 |
2857 | 3707 | 5.507315 | CCACTAGGTTGTCAATTTGACCAAC | 60.507 | 44.000 | 23.22 | 22.93 | 46.40 | 3.77 |
2858 | 3708 | 4.582656 | CCACTAGGTTGTCAATTTGACCAA | 59.417 | 41.667 | 23.22 | 15.47 | 46.40 | 3.67 |
2859 | 3709 | 4.141287 | CCACTAGGTTGTCAATTTGACCA | 58.859 | 43.478 | 23.22 | 12.38 | 46.40 | 4.02 |
2860 | 3710 | 4.766404 | CCACTAGGTTGTCAATTTGACC | 57.234 | 45.455 | 23.22 | 11.44 | 46.40 | 4.02 |
2874 | 3724 | 2.578713 | CGTGCGCGTACCACTAGG | 60.579 | 66.667 | 21.71 | 2.39 | 42.21 | 3.02 |
2884 | 3734 | 2.019951 | AGTTTACAGGACGTGCGCG | 61.020 | 57.895 | 19.78 | 19.78 | 44.93 | 6.86 |
2885 | 3735 | 0.942410 | TCAGTTTACAGGACGTGCGC | 60.942 | 55.000 | 0.00 | 0.00 | 0.00 | 6.09 |
2886 | 3736 | 1.060713 | CTCAGTTTACAGGACGTGCG | 58.939 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2887 | 3737 | 2.030185 | TCTCTCAGTTTACAGGACGTGC | 60.030 | 50.000 | 0.00 | 0.00 | 0.00 | 5.34 |
2888 | 3738 | 3.502595 | TCTCTCTCAGTTTACAGGACGTG | 59.497 | 47.826 | 0.00 | 0.00 | 0.00 | 4.49 |
2889 | 3739 | 3.752665 | TCTCTCTCAGTTTACAGGACGT | 58.247 | 45.455 | 0.00 | 0.00 | 0.00 | 4.34 |
2890 | 3740 | 3.127895 | CCTCTCTCTCAGTTTACAGGACG | 59.872 | 52.174 | 0.00 | 0.00 | 0.00 | 4.79 |
2891 | 3741 | 3.445805 | CCCTCTCTCTCAGTTTACAGGAC | 59.554 | 52.174 | 0.00 | 0.00 | 0.00 | 3.85 |
2892 | 3742 | 3.333980 | TCCCTCTCTCTCAGTTTACAGGA | 59.666 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
2893 | 3743 | 3.699038 | CTCCCTCTCTCTCAGTTTACAGG | 59.301 | 52.174 | 0.00 | 0.00 | 0.00 | 4.00 |
2894 | 3744 | 4.340617 | ACTCCCTCTCTCTCAGTTTACAG | 58.659 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
2895 | 3745 | 4.390129 | ACTCCCTCTCTCTCAGTTTACA | 57.610 | 45.455 | 0.00 | 0.00 | 0.00 | 2.41 |
2896 | 3746 | 6.837471 | TTTACTCCCTCTCTCTCAGTTTAC | 57.163 | 41.667 | 0.00 | 0.00 | 0.00 | 2.01 |
2897 | 3747 | 7.509659 | ACTTTTTACTCCCTCTCTCTCAGTTTA | 59.490 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
2898 | 3748 | 6.327887 | ACTTTTTACTCCCTCTCTCTCAGTTT | 59.672 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
2899 | 3749 | 5.841783 | ACTTTTTACTCCCTCTCTCTCAGTT | 59.158 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2900 | 3750 | 5.399113 | ACTTTTTACTCCCTCTCTCTCAGT | 58.601 | 41.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2901 | 3751 | 5.993748 | ACTTTTTACTCCCTCTCTCTCAG | 57.006 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
2902 | 3752 | 8.114102 | TGTATACTTTTTACTCCCTCTCTCTCA | 58.886 | 37.037 | 4.17 | 0.00 | 0.00 | 3.27 |
2903 | 3753 | 8.522542 | TGTATACTTTTTACTCCCTCTCTCTC | 57.477 | 38.462 | 4.17 | 0.00 | 0.00 | 3.20 |
2904 | 3754 | 8.896722 | TTGTATACTTTTTACTCCCTCTCTCT | 57.103 | 34.615 | 4.17 | 0.00 | 0.00 | 3.10 |
2905 | 3755 | 9.939802 | TTTTGTATACTTTTTACTCCCTCTCTC | 57.060 | 33.333 | 4.17 | 0.00 | 0.00 | 3.20 |
2973 | 3823 | 9.502091 | GGCAAATACCTATACATATTCTCAACA | 57.498 | 33.333 | 0.00 | 0.00 | 0.00 | 3.33 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.