Multiple sequence alignment - TraesCS5B01G069900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G069900 chr5B 100.000 6349 0 0 1 6349 79809739 79803391 0.000000e+00 11725.0
1 TraesCS5B01G069900 chr5D 92.519 3101 145 41 3288 6349 72903938 72900886 0.000000e+00 4361.0
2 TraesCS5B01G069900 chr5D 83.844 1337 145 32 821 2115 72907316 72906009 0.000000e+00 1206.0
3 TraesCS5B01G069900 chr5D 81.139 843 123 19 1061 1871 58143402 58144240 1.490000e-180 643.0
4 TraesCS5B01G069900 chr5D 78.179 582 108 15 1278 1843 58147192 58147770 2.820000e-93 353.0
5 TraesCS5B01G069900 chr5D 79.245 212 37 7 2197 2405 34223290 34223497 2.390000e-29 141.0
6 TraesCS5B01G069900 chr5D 92.857 70 4 1 643 711 72907420 72907351 4.050000e-17 100.0
7 TraesCS5B01G069900 chr5D 85.185 81 9 3 3213 3290 72905358 72905278 5.280000e-11 80.5
8 TraesCS5B01G069900 chr5A 94.664 2324 78 19 4062 6349 67472007 67469694 0.000000e+00 3563.0
9 TraesCS5B01G069900 chr5A 81.380 1826 236 47 741 2513 67475894 67474120 0.000000e+00 1393.0
10 TraesCS5B01G069900 chr5A 87.117 652 62 14 3330 3977 67472653 67472020 0.000000e+00 719.0
11 TraesCS5B01G069900 chr5A 78.685 1004 168 29 1074 2040 46500404 46501398 1.500000e-175 627.0
12 TraesCS5B01G069900 chr5A 81.218 788 91 31 735 1500 67478540 67477788 3.300000e-162 582.0
13 TraesCS5B01G069900 chr5A 89.559 431 33 11 2898 3321 67473363 67472938 2.600000e-148 536.0
14 TraesCS5B01G069900 chr5A 85.275 455 55 6 1 444 67479141 67478688 5.800000e-125 459.0
15 TraesCS5B01G069900 chr5A 87.500 296 33 3 2527 2819 67473710 67473416 7.880000e-89 339.0
16 TraesCS5B01G069900 chr5A 85.185 243 33 3 389 630 67476622 67476382 4.920000e-61 246.0
17 TraesCS5B01G069900 chr5A 85.507 207 27 1 1647 1850 67477608 67477402 4.990000e-51 213.0
18 TraesCS5B01G069900 chr5A 98.551 69 1 0 649 717 67478593 67478525 8.640000e-24 122.0
19 TraesCS5B01G069900 chr5A 80.612 98 15 3 3152 3249 321922923 321923016 8.830000e-09 73.1
20 TraesCS5B01G069900 chr5A 97.500 40 1 0 648 687 67476390 67476351 1.140000e-07 69.4
21 TraesCS5B01G069900 chr5A 91.837 49 3 1 3199 3247 534988058 534988105 4.110000e-07 67.6
22 TraesCS5B01G069900 chr4B 75.971 824 143 44 4232 5041 495584958 495584176 2.160000e-99 374.0
23 TraesCS5B01G069900 chr4B 86.250 80 9 1 2419 2498 656144265 656144342 1.130000e-12 86.1
24 TraesCS5B01G069900 chr4A 75.942 823 145 44 4232 5041 58870028 58869246 2.160000e-99 374.0
25 TraesCS5B01G069900 chr4D 75.577 823 148 45 4232 5041 401077707 401076925 2.180000e-94 357.0
26 TraesCS5B01G069900 chr4D 78.284 571 97 22 4430 4988 417608750 417608195 6.100000e-90 342.0
27 TraesCS5B01G069900 chr4D 79.545 264 50 4 2145 2405 35593300 35593038 1.090000e-42 185.0
28 TraesCS5B01G069900 chr4D 80.976 205 33 6 2205 2406 386159701 386159902 2.370000e-34 158.0
29 TraesCS5B01G069900 chr1A 77.165 508 80 30 4499 4988 549712059 549712548 4.880000e-66 263.0
30 TraesCS5B01G069900 chr3D 82.624 282 32 11 5767 6045 79508895 79509162 3.830000e-57 233.0
31 TraesCS5B01G069900 chr3D 83.251 203 30 3 6149 6349 79509240 79509440 3.910000e-42 183.0
32 TraesCS5B01G069900 chr3D 74.187 523 89 30 4499 4992 17842829 17843334 6.540000e-40 176.0
33 TraesCS5B01G069900 chr3D 81.053 190 34 2 2217 2405 430096604 430096416 3.970000e-32 150.0
34 TraesCS5B01G069900 chrUn 75.775 516 84 31 4499 4992 37382558 37382062 8.280000e-54 222.0
35 TraesCS5B01G069900 chr2A 79.916 239 43 4 2169 2405 709692498 709692263 3.040000e-38 171.0
36 TraesCS5B01G069900 chr2A 81.699 153 25 3 2243 2394 598642961 598643111 2.400000e-24 124.0
37 TraesCS5B01G069900 chr2A 93.617 47 2 1 4699 4744 31938359 31938405 1.140000e-07 69.4
38 TraesCS5B01G069900 chr7D 85.366 164 23 1 2243 2405 159668912 159668749 1.090000e-37 169.0
39 TraesCS5B01G069900 chr7D 84.043 94 15 0 2419 2512 206847278 206847371 2.440000e-14 91.6
40 TraesCS5B01G069900 chr2D 78.992 238 42 8 2169 2405 450917778 450917548 8.520000e-34 156.0
41 TraesCS5B01G069900 chr2B 76.923 247 53 4 2162 2405 75713122 75713367 3.090000e-28 137.0
42 TraesCS5B01G069900 chr2B 76.451 293 35 6 2218 2508 417252060 417252320 1.860000e-25 128.0
43 TraesCS5B01G069900 chr3B 78.537 205 41 2 2199 2402 585028817 585029019 1.440000e-26 132.0
44 TraesCS5B01G069900 chr3B 88.235 51 5 1 3199 3249 709524605 709524654 6.870000e-05 60.2
45 TraesCS5B01G069900 chr3A 79.688 192 32 7 2217 2405 87385878 87386065 1.440000e-26 132.0
46 TraesCS5B01G069900 chr3A 86.667 90 11 1 2419 2508 398887696 398887784 1.460000e-16 99.0
47 TraesCS5B01G069900 chr6B 83.333 102 13 4 3151 3249 94301904 94301804 2.440000e-14 91.6
48 TraesCS5B01G069900 chr6B 84.946 93 9 2 2428 2519 513685674 513685586 8.770000e-14 89.8
49 TraesCS5B01G069900 chr1D 100.000 30 0 0 3220 3249 107157795 107157824 8.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G069900 chr5B 79803391 79809739 6348 True 11725.000000 11725 100.00000 1 6349 1 chr5B.!!$R1 6348
1 TraesCS5B01G069900 chr5D 72900886 72907420 6534 True 1436.875000 4361 88.60125 643 6349 4 chr5D.!!$R1 5706
2 TraesCS5B01G069900 chr5D 58143402 58147770 4368 False 498.000000 643 79.65900 1061 1871 2 chr5D.!!$F2 810
3 TraesCS5B01G069900 chr5A 67469694 67479141 9447 True 749.218182 3563 88.49600 1 6349 11 chr5A.!!$R1 6348
4 TraesCS5B01G069900 chr5A 46500404 46501398 994 False 627.000000 627 78.68500 1074 2040 1 chr5A.!!$F1 966
5 TraesCS5B01G069900 chr4B 495584176 495584958 782 True 374.000000 374 75.97100 4232 5041 1 chr4B.!!$R1 809
6 TraesCS5B01G069900 chr4A 58869246 58870028 782 True 374.000000 374 75.94200 4232 5041 1 chr4A.!!$R1 809
7 TraesCS5B01G069900 chr4D 401076925 401077707 782 True 357.000000 357 75.57700 4232 5041 1 chr4D.!!$R2 809
8 TraesCS5B01G069900 chr4D 417608195 417608750 555 True 342.000000 342 78.28400 4430 4988 1 chr4D.!!$R3 558
9 TraesCS5B01G069900 chr3D 79508895 79509440 545 False 208.000000 233 82.93750 5767 6349 2 chr3D.!!$F2 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.034059 CCGGCCATCTACACCATCTC 59.966 60.0 2.24 0.0 0.00 2.75 F
283 284 0.039764 GGTGAGGGGAAGGGGAAAAG 59.960 60.0 0.00 0.0 0.00 2.27 F
517 528 0.107081 CCAACACTAACCGTCCACCA 59.893 55.0 0.00 0.0 0.00 4.17 F
717 728 0.311790 CTCATTTGCGTGCCACACTT 59.688 50.0 0.00 0.0 31.34 3.16 F
1603 4285 0.041576 GAAACCAAAGTGCGACGACC 60.042 55.0 0.00 0.0 0.00 4.79 F
2490 5200 0.100682 CTCTGTCCCGTGGTACATCG 59.899 60.0 0.00 0.0 44.52 3.84 F
3690 10011 0.036875 AGCGGGTTCCCAAGAAGAAG 59.963 55.0 8.70 0.0 30.91 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 4077 0.036164 TGCATAAGGACGTGTTGCCT 59.964 50.000 0.00 0.0 35.61 4.75 R
1422 4080 0.095245 CGCTGCATAAGGACGTGTTG 59.905 55.000 0.00 0.0 0.00 3.33 R
1524 4203 0.165295 TGTCGTTCGACGTAGCAGAG 59.835 55.000 18.11 0.0 43.14 3.35 R
2519 5229 0.035439 ACATCTAACCTTGGTGCCCG 60.035 55.000 0.00 0.0 0.00 6.13 R
3503 9816 0.040067 CAAAGCTCGGCACAAAGTCC 60.040 55.000 0.00 0.0 0.00 3.85 R
3772 10093 0.107017 CCGGAAGCATCTTGACCCAT 60.107 55.000 0.00 0.0 0.00 4.00 R
5462 11909 1.334869 CCTGTGAGTTGTTCTTGTGCC 59.665 52.381 0.00 0.0 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.959867 CCAATGCCACACCATCGTCA 60.960 55.000 0.00 0.00 0.00 4.35
24 25 2.173669 CCACACCATCGTCATCGCC 61.174 63.158 0.00 0.00 36.96 5.54
35 36 1.995066 TCATCGCCACCACCAGGAT 60.995 57.895 0.00 0.00 38.69 3.24
51 52 0.390860 GGATGGTGTCCCAGATCTCG 59.609 60.000 0.00 0.00 46.15 4.04
55 56 3.147595 TGTCCCAGATCTCGCCGG 61.148 66.667 0.00 0.00 0.00 6.13
61 62 2.522923 AGATCTCGCCGGCCATCT 60.523 61.111 23.46 21.16 0.00 2.90
71 72 0.034059 CCGGCCATCTACACCATCTC 59.966 60.000 2.24 0.00 0.00 2.75
73 74 1.040646 GGCCATCTACACCATCTCGA 58.959 55.000 0.00 0.00 0.00 4.04
79 80 1.001120 TACACCATCTCGAGCCCCA 59.999 57.895 7.81 0.00 0.00 4.96
85 86 3.170490 ATCTCGAGCCCCATTCCGC 62.170 63.158 7.81 0.00 0.00 5.54
93 94 4.195334 CCCATTCCGCCTCCCCAG 62.195 72.222 0.00 0.00 0.00 4.45
94 95 3.089874 CCATTCCGCCTCCCCAGA 61.090 66.667 0.00 0.00 0.00 3.86
113 114 5.945784 CCCAGACACCAAATATCTGAAGAAA 59.054 40.000 2.08 0.00 42.07 2.52
118 119 8.454106 AGACACCAAATATCTGAAGAAAAATCG 58.546 33.333 0.00 0.00 0.00 3.34
119 120 7.029563 ACACCAAATATCTGAAGAAAAATCGC 58.970 34.615 0.00 0.00 0.00 4.58
124 125 0.451783 CTGAAGAAAAATCGCCGGGG 59.548 55.000 13.31 13.31 0.00 5.73
128 129 1.102978 AGAAAAATCGCCGGGGAATG 58.897 50.000 26.33 0.00 0.00 2.67
138 139 2.836888 GGGGAATGACCGGGATCC 59.163 66.667 6.32 1.92 40.11 3.36
140 141 2.440817 GGGAATGACCGGGATCCGT 61.441 63.158 6.32 0.00 46.80 4.69
141 142 1.227556 GGAATGACCGGGATCCGTG 60.228 63.158 6.32 1.22 46.80 4.94
164 165 1.959226 ACACATTGTCGTCGCACCC 60.959 57.895 0.00 0.00 0.00 4.61
167 168 1.374125 CATTGTCGTCGCACCCTCA 60.374 57.895 0.00 0.00 0.00 3.86
174 175 3.680786 TCGCACCCTCACACCGAG 61.681 66.667 0.00 0.00 41.89 4.63
178 179 0.534203 GCACCCTCACACCGAGAAAA 60.534 55.000 0.00 0.00 45.45 2.29
181 182 0.249741 CCCTCACACCGAGAAAACGT 60.250 55.000 0.00 0.00 45.45 3.99
186 187 0.383231 ACACCGAGAAAACGTCGAGT 59.617 50.000 0.00 0.00 39.92 4.18
196 197 2.811317 CGTCGAGTGGAGCTTGGC 60.811 66.667 0.00 0.00 0.00 4.52
221 222 1.846261 GCCATGGGAGGATAAGGCA 59.154 57.895 15.13 0.00 41.63 4.75
232 233 4.819088 GGAGGATAAGGCAAAATGAGAGAC 59.181 45.833 0.00 0.00 0.00 3.36
236 237 3.795688 AAGGCAAAATGAGAGACTGGA 57.204 42.857 0.00 0.00 0.00 3.86
256 257 3.509442 GATGAGATGAGAGGGGAGTGAT 58.491 50.000 0.00 0.00 0.00 3.06
259 260 3.465210 TGAGATGAGAGGGGAGTGATAGT 59.535 47.826 0.00 0.00 0.00 2.12
278 279 3.400054 GTCGGTGAGGGGAAGGGG 61.400 72.222 0.00 0.00 0.00 4.79
283 284 0.039764 GGTGAGGGGAAGGGGAAAAG 59.960 60.000 0.00 0.00 0.00 2.27
284 285 0.778083 GTGAGGGGAAGGGGAAAAGT 59.222 55.000 0.00 0.00 0.00 2.66
292 296 2.152016 GAAGGGGAAAAGTCAGTTCGG 58.848 52.381 0.00 0.00 0.00 4.30
298 302 2.289820 GGAAAAGTCAGTTCGGTTCCAC 59.710 50.000 0.00 0.00 35.61 4.02
307 311 0.326927 TTCGGTTCCACCTTCCCATC 59.673 55.000 0.00 0.00 35.66 3.51
312 316 1.060729 TTCCACCTTCCCATCGAACA 58.939 50.000 0.00 0.00 0.00 3.18
344 348 1.525197 TGACGTGAAGCTAACTTTGCG 59.475 47.619 0.00 2.81 35.82 4.85
361 372 0.452122 GCGTCGTGTTGAAAATCCGG 60.452 55.000 0.00 0.00 0.00 5.14
367 378 1.287503 GTTGAAAATCCGGCGGCAA 59.712 52.632 23.83 16.48 0.00 4.52
373 384 1.178276 AAATCCGGCGGCAATTAACA 58.822 45.000 23.83 0.44 0.00 2.41
374 385 0.454196 AATCCGGCGGCAATTAACAC 59.546 50.000 23.83 0.00 0.00 3.32
396 407 3.307782 CGTTCGACGGCCAAATTATTAGT 59.692 43.478 2.24 0.00 38.08 2.24
402 413 5.236478 CGACGGCCAAATTATTAGTGATTCT 59.764 40.000 2.24 0.00 0.00 2.40
426 437 7.927629 TCTGAAAAGAAAAATGTGATCCAAAGG 59.072 33.333 0.00 0.00 0.00 3.11
444 455 4.846168 AAGGAGGCCTTAGTCTTTTAGG 57.154 45.455 6.77 0.00 42.74 2.69
445 456 3.116174 AGGAGGCCTTAGTCTTTTAGGG 58.884 50.000 6.77 0.00 0.00 3.53
446 457 3.113043 GGAGGCCTTAGTCTTTTAGGGA 58.887 50.000 6.77 0.00 0.00 4.20
447 458 3.522343 GGAGGCCTTAGTCTTTTAGGGAA 59.478 47.826 6.77 0.00 0.00 3.97
448 459 4.166337 GGAGGCCTTAGTCTTTTAGGGAAT 59.834 45.833 6.77 0.00 0.00 3.01
450 461 5.756918 AGGCCTTAGTCTTTTAGGGAATTC 58.243 41.667 0.00 0.00 0.00 2.17
452 463 6.677076 AGGCCTTAGTCTTTTAGGGAATTCTA 59.323 38.462 0.00 0.00 0.00 2.10
453 464 6.993308 GGCCTTAGTCTTTTAGGGAATTCTAG 59.007 42.308 5.23 0.00 0.00 2.43
454 465 7.147532 GGCCTTAGTCTTTTAGGGAATTCTAGA 60.148 40.741 5.23 0.00 0.00 2.43
455 466 8.265764 GCCTTAGTCTTTTAGGGAATTCTAGAA 58.734 37.037 7.82 7.82 0.00 2.10
459 470 8.450780 AGTCTTTTAGGGAATTCTAGAAAGGA 57.549 34.615 9.71 6.37 0.00 3.36
460 471 8.322828 AGTCTTTTAGGGAATTCTAGAAAGGAC 58.677 37.037 20.80 20.80 0.00 3.85
461 472 7.278203 GTCTTTTAGGGAATTCTAGAAAGGACG 59.722 40.741 9.71 0.00 0.00 4.79
462 473 6.616237 TTTAGGGAATTCTAGAAAGGACGT 57.384 37.500 9.71 5.02 0.00 4.34
463 474 4.739587 AGGGAATTCTAGAAAGGACGTC 57.260 45.455 9.71 7.13 0.00 4.34
464 475 4.094476 AGGGAATTCTAGAAAGGACGTCA 58.906 43.478 18.91 0.00 0.00 4.35
465 476 4.717280 AGGGAATTCTAGAAAGGACGTCAT 59.283 41.667 18.91 7.60 0.00 3.06
466 477 5.897824 AGGGAATTCTAGAAAGGACGTCATA 59.102 40.000 18.91 0.00 0.00 2.15
467 478 6.383147 AGGGAATTCTAGAAAGGACGTCATAA 59.617 38.462 18.91 0.04 0.00 1.90
468 479 7.046033 GGGAATTCTAGAAAGGACGTCATAAA 58.954 38.462 18.91 0.00 0.00 1.40
469 480 7.551617 GGGAATTCTAGAAAGGACGTCATAAAA 59.448 37.037 18.91 0.76 0.00 1.52
470 481 8.943002 GGAATTCTAGAAAGGACGTCATAAAAA 58.057 33.333 18.91 0.73 0.00 1.94
478 489 8.827677 AGAAAGGACGTCATAAAAATATGTAGC 58.172 33.333 18.91 0.00 0.00 3.58
479 490 7.492352 AAGGACGTCATAAAAATATGTAGCC 57.508 36.000 18.91 0.00 0.00 3.93
480 491 6.827727 AGGACGTCATAAAAATATGTAGCCT 58.172 36.000 18.91 0.00 0.00 4.58
481 492 7.959175 AGGACGTCATAAAAATATGTAGCCTA 58.041 34.615 18.91 0.00 0.00 3.93
482 493 7.871463 AGGACGTCATAAAAATATGTAGCCTAC 59.129 37.037 18.91 0.00 0.00 3.18
483 494 7.871463 GGACGTCATAAAAATATGTAGCCTACT 59.129 37.037 18.91 0.00 0.00 2.57
484 495 8.813643 ACGTCATAAAAATATGTAGCCTACTC 57.186 34.615 3.13 0.00 0.00 2.59
485 496 8.418662 ACGTCATAAAAATATGTAGCCTACTCA 58.581 33.333 3.13 0.00 0.00 3.41
486 497 9.256477 CGTCATAAAAATATGTAGCCTACTCAA 57.744 33.333 3.13 0.00 0.00 3.02
491 502 6.920569 AAATATGTAGCCTACTCAAAACCG 57.079 37.500 3.13 0.00 0.00 4.44
492 503 5.864418 ATATGTAGCCTACTCAAAACCGA 57.136 39.130 3.13 0.00 0.00 4.69
493 504 4.546829 ATGTAGCCTACTCAAAACCGAA 57.453 40.909 3.13 0.00 0.00 4.30
494 505 4.546829 TGTAGCCTACTCAAAACCGAAT 57.453 40.909 3.13 0.00 0.00 3.34
495 506 4.901868 TGTAGCCTACTCAAAACCGAATT 58.098 39.130 3.13 0.00 0.00 2.17
496 507 6.040209 TGTAGCCTACTCAAAACCGAATTA 57.960 37.500 3.13 0.00 0.00 1.40
497 508 6.465948 TGTAGCCTACTCAAAACCGAATTAA 58.534 36.000 3.13 0.00 0.00 1.40
498 509 5.874895 AGCCTACTCAAAACCGAATTAAC 57.125 39.130 0.00 0.00 0.00 2.01
499 510 4.698780 AGCCTACTCAAAACCGAATTAACC 59.301 41.667 0.00 0.00 0.00 2.85
500 511 4.456566 GCCTACTCAAAACCGAATTAACCA 59.543 41.667 0.00 0.00 0.00 3.67
501 512 5.048573 GCCTACTCAAAACCGAATTAACCAA 60.049 40.000 0.00 0.00 0.00 3.67
502 513 6.376177 CCTACTCAAAACCGAATTAACCAAC 58.624 40.000 0.00 0.00 0.00 3.77
503 514 5.838531 ACTCAAAACCGAATTAACCAACA 57.161 34.783 0.00 0.00 0.00 3.33
504 515 5.584442 ACTCAAAACCGAATTAACCAACAC 58.416 37.500 0.00 0.00 0.00 3.32
505 516 5.358725 ACTCAAAACCGAATTAACCAACACT 59.641 36.000 0.00 0.00 0.00 3.55
506 517 6.543100 ACTCAAAACCGAATTAACCAACACTA 59.457 34.615 0.00 0.00 0.00 2.74
507 518 7.067251 ACTCAAAACCGAATTAACCAACACTAA 59.933 33.333 0.00 0.00 0.00 2.24
508 519 7.194962 TCAAAACCGAATTAACCAACACTAAC 58.805 34.615 0.00 0.00 0.00 2.34
509 520 5.694231 AACCGAATTAACCAACACTAACC 57.306 39.130 0.00 0.00 0.00 2.85
510 521 3.747529 ACCGAATTAACCAACACTAACCG 59.252 43.478 0.00 0.00 0.00 4.44
511 522 3.747529 CCGAATTAACCAACACTAACCGT 59.252 43.478 0.00 0.00 0.00 4.83
512 523 4.143052 CCGAATTAACCAACACTAACCGTC 60.143 45.833 0.00 0.00 0.00 4.79
513 524 4.143052 CGAATTAACCAACACTAACCGTCC 60.143 45.833 0.00 0.00 0.00 4.79
514 525 3.834489 TTAACCAACACTAACCGTCCA 57.166 42.857 0.00 0.00 0.00 4.02
515 526 1.957668 AACCAACACTAACCGTCCAC 58.042 50.000 0.00 0.00 0.00 4.02
516 527 0.107268 ACCAACACTAACCGTCCACC 59.893 55.000 0.00 0.00 0.00 4.61
517 528 0.107081 CCAACACTAACCGTCCACCA 59.893 55.000 0.00 0.00 0.00 4.17
518 529 1.271163 CCAACACTAACCGTCCACCAT 60.271 52.381 0.00 0.00 0.00 3.55
519 530 2.027929 CCAACACTAACCGTCCACCATA 60.028 50.000 0.00 0.00 0.00 2.74
520 531 3.370103 CCAACACTAACCGTCCACCATAT 60.370 47.826 0.00 0.00 0.00 1.78
521 532 3.536956 ACACTAACCGTCCACCATATG 57.463 47.619 0.00 0.00 0.00 1.78
522 533 3.101437 ACACTAACCGTCCACCATATGA 58.899 45.455 3.65 0.00 0.00 2.15
523 534 3.709653 ACACTAACCGTCCACCATATGAT 59.290 43.478 3.65 0.00 0.00 2.45
524 535 4.897076 ACACTAACCGTCCACCATATGATA 59.103 41.667 3.65 0.00 0.00 2.15
525 536 5.364446 ACACTAACCGTCCACCATATGATAA 59.636 40.000 3.65 0.00 0.00 1.75
526 537 6.126997 ACACTAACCGTCCACCATATGATAAA 60.127 38.462 3.65 0.00 0.00 1.40
527 538 6.934645 CACTAACCGTCCACCATATGATAAAT 59.065 38.462 3.65 0.00 0.00 1.40
528 539 7.444183 CACTAACCGTCCACCATATGATAAATT 59.556 37.037 3.65 0.00 0.00 1.82
529 540 7.996644 ACTAACCGTCCACCATATGATAAATTT 59.003 33.333 3.65 0.00 0.00 1.82
530 541 6.877611 ACCGTCCACCATATGATAAATTTC 57.122 37.500 3.65 0.00 0.00 2.17
531 542 6.601332 ACCGTCCACCATATGATAAATTTCT 58.399 36.000 3.65 0.00 0.00 2.52
532 543 6.486657 ACCGTCCACCATATGATAAATTTCTG 59.513 38.462 3.65 0.00 0.00 3.02
533 544 6.072508 CCGTCCACCATATGATAAATTTCTGG 60.073 42.308 3.65 0.00 0.00 3.86
534 545 6.568462 CGTCCACCATATGATAAATTTCTGGC 60.568 42.308 3.65 0.00 0.00 4.85
535 546 6.491403 GTCCACCATATGATAAATTTCTGGCT 59.509 38.462 3.65 0.00 0.00 4.75
536 547 6.716628 TCCACCATATGATAAATTTCTGGCTC 59.283 38.462 3.65 0.00 0.00 4.70
537 548 6.348786 CCACCATATGATAAATTTCTGGCTCG 60.349 42.308 3.65 0.00 0.00 5.03
538 549 5.182001 ACCATATGATAAATTTCTGGCTCGC 59.818 40.000 3.65 0.00 0.00 5.03
542 553 8.671921 CATATGATAAATTTCTGGCTCGCTAAT 58.328 33.333 0.00 0.00 0.00 1.73
559 570 5.061808 TCGCTAATAAGTCGCTTCTGAAAAC 59.938 40.000 0.00 0.00 0.00 2.43
575 586 9.760660 CTTCTGAAAACGATCTTCGATATTTTT 57.239 29.630 3.62 0.41 43.74 1.94
620 631 5.473849 TTTGGGTAATGGATGGGAATACA 57.526 39.130 0.00 0.00 0.00 2.29
621 632 5.473849 TTGGGTAATGGATGGGAATACAA 57.526 39.130 0.00 0.00 0.00 2.41
622 633 5.473849 TGGGTAATGGATGGGAATACAAA 57.526 39.130 0.00 0.00 0.00 2.83
623 634 5.205056 TGGGTAATGGATGGGAATACAAAC 58.795 41.667 0.00 0.00 0.00 2.93
624 635 5.205056 GGGTAATGGATGGGAATACAAACA 58.795 41.667 0.00 0.00 0.00 2.83
625 636 5.838521 GGGTAATGGATGGGAATACAAACAT 59.161 40.000 0.00 0.00 0.00 2.71
626 637 7.007723 GGGTAATGGATGGGAATACAAACATA 58.992 38.462 0.00 0.00 0.00 2.29
627 638 7.673926 GGGTAATGGATGGGAATACAAACATAT 59.326 37.037 0.00 0.00 0.00 1.78
628 639 9.088987 GGTAATGGATGGGAATACAAACATATT 57.911 33.333 0.00 0.00 0.00 1.28
632 643 8.017418 TGGATGGGAATACAAACATATTTTCC 57.983 34.615 0.00 0.00 0.00 3.13
633 644 7.070571 TGGATGGGAATACAAACATATTTTCCC 59.929 37.037 10.86 10.86 39.91 3.97
634 645 6.800072 TGGGAATACAAACATATTTTCCCC 57.200 37.500 14.28 0.00 39.20 4.81
635 646 5.361285 TGGGAATACAAACATATTTTCCCCG 59.639 40.000 14.28 0.00 39.20 5.73
636 647 5.286438 GGAATACAAACATATTTTCCCCGC 58.714 41.667 0.00 0.00 0.00 6.13
637 648 5.163499 GGAATACAAACATATTTTCCCCGCA 60.163 40.000 0.00 0.00 0.00 5.69
638 649 5.923733 ATACAAACATATTTTCCCCGCAA 57.076 34.783 0.00 0.00 0.00 4.85
639 650 4.608948 ACAAACATATTTTCCCCGCAAA 57.391 36.364 0.00 0.00 0.00 3.68
640 651 4.962155 ACAAACATATTTTCCCCGCAAAA 58.038 34.783 0.00 0.00 0.00 2.44
641 652 5.368989 ACAAACATATTTTCCCCGCAAAAA 58.631 33.333 0.00 0.00 0.00 1.94
717 728 0.311790 CTCATTTGCGTGCCACACTT 59.688 50.000 0.00 0.00 31.34 3.16
718 729 0.743688 TCATTTGCGTGCCACACTTT 59.256 45.000 0.00 0.00 31.34 2.66
719 730 1.135915 TCATTTGCGTGCCACACTTTT 59.864 42.857 0.00 0.00 31.34 2.27
720 731 1.932511 CATTTGCGTGCCACACTTTTT 59.067 42.857 0.00 0.00 31.34 1.94
740 751 1.005630 TTTTTGCGGGGGATTTGCG 60.006 52.632 0.00 0.00 0.00 4.85
741 752 1.749334 TTTTTGCGGGGGATTTGCGT 61.749 50.000 0.00 0.00 0.00 5.24
742 753 2.427540 TTTTGCGGGGGATTTGCGTG 62.428 55.000 0.00 0.00 0.00 5.34
746 757 3.758931 GGGGGATTTGCGTGCCAC 61.759 66.667 0.00 0.00 0.00 5.01
747 758 2.988684 GGGGATTTGCGTGCCACA 60.989 61.111 0.00 0.00 0.00 4.17
748 759 2.258286 GGGATTTGCGTGCCACAC 59.742 61.111 0.00 0.00 0.00 3.82
749 760 2.268076 GGGATTTGCGTGCCACACT 61.268 57.895 0.00 0.00 31.34 3.55
750 761 1.081242 GGATTTGCGTGCCACACTG 60.081 57.895 0.00 0.00 31.34 3.66
787 798 5.011635 TCAACTTTGTGCTACTGATACAGGA 59.988 40.000 0.00 0.00 35.51 3.86
816 827 5.152623 ACATGGCGTGCTAGTGATAATAT 57.847 39.130 6.62 0.00 0.00 1.28
817 828 6.280855 ACATGGCGTGCTAGTGATAATATA 57.719 37.500 6.62 0.00 0.00 0.86
840 851 6.531503 AATAGTCAAAGGAGAATCGACTCA 57.468 37.500 0.00 0.00 37.98 3.41
842 853 5.413309 AGTCAAAGGAGAATCGACTCAAT 57.587 39.130 0.00 0.00 38.51 2.57
845 856 7.560368 AGTCAAAGGAGAATCGACTCAATATT 58.440 34.615 0.00 0.00 38.51 1.28
916 930 2.235016 CCTTGACCATTTTGTCCCGAA 58.765 47.619 0.00 0.00 34.25 4.30
945 960 2.749621 GCTCACCTACAACCCATTCAAG 59.250 50.000 0.00 0.00 0.00 3.02
976 994 3.055094 TGCACCTACCAAAATCTCTCTCC 60.055 47.826 0.00 0.00 0.00 3.71
978 996 4.384647 GCACCTACCAAAATCTCTCTCCAT 60.385 45.833 0.00 0.00 0.00 3.41
979 997 5.363939 CACCTACCAAAATCTCTCTCCATC 58.636 45.833 0.00 0.00 0.00 3.51
980 998 5.130145 CACCTACCAAAATCTCTCTCCATCT 59.870 44.000 0.00 0.00 0.00 2.90
981 999 5.365314 ACCTACCAAAATCTCTCTCCATCTC 59.635 44.000 0.00 0.00 0.00 2.75
982 1000 4.769345 ACCAAAATCTCTCTCCATCTCC 57.231 45.455 0.00 0.00 0.00 3.71
983 1001 3.457749 ACCAAAATCTCTCTCCATCTCCC 59.542 47.826 0.00 0.00 0.00 4.30
1002 1020 2.699846 CCCTCTCTCTCTCCCTGAAATG 59.300 54.545 0.00 0.00 0.00 2.32
1006 1024 1.836166 TCTCTCTCCCTGAAATGGCAG 59.164 52.381 0.00 0.00 35.66 4.85
1062 1080 4.099170 CGCCGTCTCGTCGTCCTT 62.099 66.667 0.00 0.00 0.00 3.36
1094 1112 2.181975 CTTGCTTCCCCATGAAACCAT 58.818 47.619 0.00 0.00 31.06 3.55
1097 1115 2.027385 GCTTCCCCATGAAACCATCTC 58.973 52.381 0.00 0.00 31.06 2.75
1099 1117 0.546122 TCCCCATGAAACCATCTCCG 59.454 55.000 0.00 0.00 0.00 4.63
1180 1207 1.196012 CTACCCTTTCGGCTTCTCCT 58.804 55.000 0.00 0.00 33.26 3.69
1182 1209 1.153549 CCCTTTCGGCTTCTCCTCG 60.154 63.158 0.00 0.00 0.00 4.63
1183 1210 1.605058 CCCTTTCGGCTTCTCCTCGA 61.605 60.000 0.00 0.00 0.00 4.04
1233 1260 2.762234 CGCCTCCGTCTCGCTACTT 61.762 63.158 0.00 0.00 0.00 2.24
1234 1261 1.064458 GCCTCCGTCTCGCTACTTC 59.936 63.158 0.00 0.00 0.00 3.01
1235 1262 1.728672 CCTCCGTCTCGCTACTTCC 59.271 63.158 0.00 0.00 0.00 3.46
1236 1263 1.030488 CCTCCGTCTCGCTACTTCCA 61.030 60.000 0.00 0.00 0.00 3.53
1238 1265 0.607217 TCCGTCTCGCTACTTCCACA 60.607 55.000 0.00 0.00 0.00 4.17
1240 1267 0.793478 CGTCTCGCTACTTCCACACG 60.793 60.000 0.00 0.00 0.00 4.49
1241 1268 0.520404 GTCTCGCTACTTCCACACGA 59.480 55.000 0.00 0.00 0.00 4.35
1242 1269 1.068748 GTCTCGCTACTTCCACACGAA 60.069 52.381 0.00 0.00 31.60 3.85
1256 3914 1.134560 ACACGAAGGAGGAGATAACGC 59.865 52.381 0.00 0.00 0.00 4.84
1260 3918 0.460311 AAGGAGGAGATAACGCCACG 59.540 55.000 0.00 0.00 38.45 4.94
1261 3919 0.683504 AGGAGGAGATAACGCCACGT 60.684 55.000 0.00 0.00 43.97 4.49
1265 3923 0.864797 GGAGATAACGCCACGTCGTC 60.865 60.000 2.55 0.00 42.46 4.20
1292 3950 2.075355 ATCGCCTTCAACCCCACCAA 62.075 55.000 0.00 0.00 0.00 3.67
1302 3960 2.218454 CCCCACCAACTCCACCGTA 61.218 63.158 0.00 0.00 0.00 4.02
1303 3961 1.004200 CCCACCAACTCCACCGTAC 60.004 63.158 0.00 0.00 0.00 3.67
1305 3963 0.320421 CCACCAACTCCACCGTACTG 60.320 60.000 0.00 0.00 0.00 2.74
1352 4010 3.744719 CGTCTCCCACGCCGAGAA 61.745 66.667 0.00 0.00 42.87 2.87
1365 4023 2.202864 GAGAAGGCGCTCTCTGGC 60.203 66.667 17.00 1.86 39.08 4.85
1386 4044 0.731855 GCAACTACGGTGTCTCGTCC 60.732 60.000 0.00 0.00 42.82 4.79
1405 4063 2.432628 GCACCGGACTGTTCCTCG 60.433 66.667 9.46 0.00 40.23 4.63
1433 4091 2.193536 GCCAAGGCAACACGTCCTT 61.194 57.895 6.14 0.56 43.06 3.36
1448 4118 4.241999 CTTATGCAGCGTGCCGGC 62.242 66.667 22.73 22.73 44.23 6.13
1467 4137 2.512515 GCCGTCATGTCCAGGCTC 60.513 66.667 13.34 0.00 45.67 4.70
1527 4206 2.955402 GTGACGTGCGTCTCCTCT 59.045 61.111 22.54 0.00 44.80 3.69
1531 4210 1.645704 GACGTGCGTCTCCTCTGCTA 61.646 60.000 16.33 0.00 41.57 3.49
1534 4213 1.674651 TGCGTCTCCTCTGCTACGT 60.675 57.895 0.00 0.00 37.64 3.57
1541 4220 0.671472 TCCTCTGCTACGTCGAACGA 60.671 55.000 13.06 0.00 46.05 3.85
1587 4269 1.064825 GGTGGGAGAAGGTGGAGAAA 58.935 55.000 0.00 0.00 0.00 2.52
1589 4271 1.064825 TGGGAGAAGGTGGAGAAACC 58.935 55.000 0.00 0.00 40.85 3.27
1603 4285 0.041576 GAAACCAAAGTGCGACGACC 60.042 55.000 0.00 0.00 0.00 4.79
1611 4293 4.700365 TGCGACGACCTGCTGACG 62.700 66.667 0.00 8.09 0.00 4.35
1617 4299 2.734591 GACCTGCTGACGTCCACA 59.265 61.111 14.12 10.21 0.00 4.17
1624 4306 0.529773 GCTGACGTCCACAGTGTTCA 60.530 55.000 14.12 0.00 37.64 3.18
1627 4309 1.138069 TGACGTCCACAGTGTTCATGT 59.862 47.619 14.12 0.00 0.00 3.21
1628 4310 2.362717 TGACGTCCACAGTGTTCATGTA 59.637 45.455 14.12 0.00 0.00 2.29
1741 4426 2.809174 CGAACGCGACATGCTCCA 60.809 61.111 15.93 0.00 43.27 3.86
1748 4433 1.006832 GCGACATGCTCCAACGTAAT 58.993 50.000 0.00 0.00 41.73 1.89
1854 4540 2.398498 CACGGTGAGTCTTGACTTCTG 58.602 52.381 0.74 8.81 0.00 3.02
1857 4543 2.034685 CGGTGAGTCTTGACTTCTGACA 59.965 50.000 4.67 0.00 33.56 3.58
1891 4585 5.704354 TCCAAAATGATATACAGGCCACAT 58.296 37.500 5.01 0.00 0.00 3.21
1899 4593 0.181114 TACAGGCCACATGGATCAGC 59.819 55.000 5.01 0.00 37.39 4.26
2015 4718 2.156504 GCGCGACATAATCCAATCTCAG 59.843 50.000 12.10 0.00 0.00 3.35
2029 4734 0.601558 TCTCAGTAGTTCACACGGCC 59.398 55.000 0.00 0.00 0.00 6.13
2031 4736 0.753867 TCAGTAGTTCACACGGCCAA 59.246 50.000 2.24 0.00 0.00 4.52
2032 4737 1.139256 TCAGTAGTTCACACGGCCAAA 59.861 47.619 2.24 0.00 0.00 3.28
2033 4738 1.944024 CAGTAGTTCACACGGCCAAAA 59.056 47.619 2.24 0.00 0.00 2.44
2034 4739 2.356382 CAGTAGTTCACACGGCCAAAAA 59.644 45.455 2.24 0.00 0.00 1.94
2068 4773 0.896226 AGACGGCTACTCCACTTTCC 59.104 55.000 0.00 0.00 34.01 3.13
2073 4778 3.056035 ACGGCTACTCCACTTTCCTAAAG 60.056 47.826 0.00 0.00 44.10 1.85
2092 4797 4.489679 AAGGATTTCAGACAACGCTTTC 57.510 40.909 0.00 0.00 0.00 2.62
2115 4820 0.107654 GCGGGTTGTCTAGGCATCTT 60.108 55.000 0.00 0.00 0.00 2.40
2122 4827 4.943705 GGTTGTCTAGGCATCTTCAAATCA 59.056 41.667 0.00 0.00 0.00 2.57
2125 4830 6.748333 TGTCTAGGCATCTTCAAATCAAAG 57.252 37.500 0.00 0.00 0.00 2.77
2130 4838 9.295825 TCTAGGCATCTTCAAATCAAAGTAAAA 57.704 29.630 0.00 0.00 0.00 1.52
2138 4846 7.594758 TCTTCAAATCAAAGTAAAATTGCTCCG 59.405 33.333 0.00 0.00 0.00 4.63
2151 4859 2.350895 CTCCGGCATTGTGGGTGA 59.649 61.111 0.00 0.00 0.00 4.02
2159 4867 1.755179 CATTGTGGGTGATCAGTCCC 58.245 55.000 13.42 13.42 43.67 4.46
2160 4868 0.253044 ATTGTGGGTGATCAGTCCCG 59.747 55.000 14.93 0.00 46.13 5.14
2161 4869 1.836999 TTGTGGGTGATCAGTCCCGG 61.837 60.000 14.93 0.00 46.13 5.73
2163 4871 1.002921 TGGGTGATCAGTCCCGGAT 59.997 57.895 14.93 0.00 46.13 4.18
2164 4872 0.263468 TGGGTGATCAGTCCCGGATA 59.737 55.000 14.93 0.00 46.13 2.59
2165 4873 0.680061 GGGTGATCAGTCCCGGATAC 59.320 60.000 0.73 0.00 33.97 2.24
2166 4874 1.705873 GGTGATCAGTCCCGGATACT 58.294 55.000 0.73 2.67 0.00 2.12
2167 4875 2.490351 GGGTGATCAGTCCCGGATACTA 60.490 54.545 0.73 0.00 33.97 1.82
2168 4876 3.228453 GGTGATCAGTCCCGGATACTAA 58.772 50.000 0.73 0.00 0.00 2.24
2169 4877 3.833070 GGTGATCAGTCCCGGATACTAAT 59.167 47.826 0.73 0.00 0.00 1.73
2170 4878 4.322049 GGTGATCAGTCCCGGATACTAATG 60.322 50.000 0.73 0.00 0.00 1.90
2171 4879 4.281182 GTGATCAGTCCCGGATACTAATGT 59.719 45.833 0.73 0.00 0.00 2.71
2172 4880 4.523173 TGATCAGTCCCGGATACTAATGTC 59.477 45.833 0.73 3.53 0.00 3.06
2173 4881 2.882761 TCAGTCCCGGATACTAATGTCG 59.117 50.000 0.73 0.00 0.00 4.35
2174 4882 2.030185 CAGTCCCGGATACTAATGTCGG 60.030 54.545 0.73 0.00 40.32 4.79
2176 4884 2.824341 GTCCCGGATACTAATGTCGGAT 59.176 50.000 0.73 0.00 42.94 4.18
2178 4886 2.607187 CCGGATACTAATGTCGGATGC 58.393 52.381 0.00 0.00 42.94 3.91
2185 4893 1.453745 AATGTCGGATGCCGCCATT 60.454 52.632 9.05 9.05 44.94 3.16
2186 4894 1.893808 ATGTCGGATGCCGCCATTC 60.894 57.895 0.07 0.00 43.14 2.67
2201 4909 4.346970 CGCCATTCAATGTTAAACGCATA 58.653 39.130 0.00 0.00 0.00 3.14
2202 4910 4.975502 CGCCATTCAATGTTAAACGCATAT 59.024 37.500 0.00 0.00 0.00 1.78
2231 4939 9.757227 TTCAAACAATTTTTCAACTAATCGGAT 57.243 25.926 0.00 0.00 0.00 4.18
2233 4941 8.434661 CAAACAATTTTTCAACTAATCGGATGG 58.565 33.333 0.00 0.00 0.00 3.51
2235 4943 7.891561 ACAATTTTTCAACTAATCGGATGGAA 58.108 30.769 0.00 0.00 0.00 3.53
2237 4945 9.369904 CAATTTTTCAACTAATCGGATGGAATT 57.630 29.630 0.00 0.00 0.00 2.17
2238 4946 9.942850 AATTTTTCAACTAATCGGATGGAATTT 57.057 25.926 0.00 0.00 0.00 1.82
2240 4948 9.849166 TTTTTCAACTAATCGGATGGAATTTAC 57.151 29.630 0.00 0.00 0.00 2.01
2241 4949 8.568676 TTTCAACTAATCGGATGGAATTTACA 57.431 30.769 0.00 0.00 0.00 2.41
2242 4950 7.548196 TCAACTAATCGGATGGAATTTACAC 57.452 36.000 0.00 0.00 0.00 2.90
2245 4953 7.931578 ACTAATCGGATGGAATTTACACAAA 57.068 32.000 0.00 0.00 0.00 2.83
2246 4954 7.758495 ACTAATCGGATGGAATTTACACAAAC 58.242 34.615 0.00 0.00 0.00 2.93
2247 4955 5.576447 ATCGGATGGAATTTACACAAACC 57.424 39.130 0.00 0.00 0.00 3.27
2248 4956 3.437395 TCGGATGGAATTTACACAAACCG 59.563 43.478 0.00 0.00 38.49 4.44
2249 4957 3.426963 CGGATGGAATTTACACAAACCGG 60.427 47.826 0.00 0.00 35.84 5.28
2250 4958 3.507786 GATGGAATTTACACAAACCGGC 58.492 45.455 0.00 0.00 0.00 6.13
2251 4959 2.307768 TGGAATTTACACAAACCGGCA 58.692 42.857 0.00 0.00 0.00 5.69
2254 4962 3.365969 GGAATTTACACAAACCGGCAGAG 60.366 47.826 0.00 0.00 0.00 3.35
2258 4966 1.523758 ACACAAACCGGCAGAGATTC 58.476 50.000 0.00 0.00 0.00 2.52
2269 4977 4.337555 CCGGCAGAGATTCATCAAAATTCT 59.662 41.667 0.00 0.00 0.00 2.40
2270 4978 5.271625 CGGCAGAGATTCATCAAAATTCTG 58.728 41.667 0.00 0.00 32.70 3.02
2312 5020 9.865321 GATTATCCATACATAGCATGCAAATTT 57.135 29.630 21.98 8.59 0.00 1.82
2321 5029 7.923888 ACATAGCATGCAAATTTAGTCTACTG 58.076 34.615 21.98 0.00 0.00 2.74
2323 5031 4.031028 GCATGCAAATTTAGTCTACTGCG 58.969 43.478 14.21 0.00 32.45 5.18
2341 5050 2.169179 GCGACAATGCTCAAATTCGAC 58.831 47.619 0.00 0.00 0.00 4.20
2351 5060 3.483738 GCTCAAATTCGACGAGCTTAACC 60.484 47.826 14.74 0.00 46.86 2.85
2352 5061 2.664568 TCAAATTCGACGAGCTTAACCG 59.335 45.455 0.00 0.00 0.00 4.44
2370 5079 3.822940 ACCGGATGTCCAACAAGTTTTA 58.177 40.909 9.46 0.00 35.14 1.52
2377 5086 6.640907 GGATGTCCAACAAGTTTTACATCAAC 59.359 38.462 24.29 13.40 40.43 3.18
2388 5097 5.063438 AGTTTTACATCAACGGATCATGTCG 59.937 40.000 0.00 0.00 32.88 4.35
2453 5163 2.620115 CAGCTTCATCCAACAGTGTGTT 59.380 45.455 0.00 0.00 42.08 3.32
2457 5167 6.149308 CAGCTTCATCCAACAGTGTGTTTATA 59.851 38.462 0.00 0.00 38.77 0.98
2490 5200 0.100682 CTCTGTCCCGTGGTACATCG 59.899 60.000 0.00 0.00 44.52 3.84
2513 5223 2.817834 GCTCGTGCGGGCAACATA 60.818 61.111 11.89 0.00 42.14 2.29
2514 5224 2.813179 GCTCGTGCGGGCAACATAG 61.813 63.158 11.89 0.00 42.14 2.23
2516 5226 0.179121 CTCGTGCGGGCAACATAGTA 60.179 55.000 0.00 0.00 39.74 1.82
2519 5229 0.307760 GTGCGGGCAACATAGTATGC 59.692 55.000 10.16 0.00 41.82 3.14
2520 5230 1.157257 TGCGGGCAACATAGTATGCG 61.157 55.000 10.16 6.42 43.47 4.73
2522 5232 1.227999 CGGGCAACATAGTATGCGGG 61.228 60.000 10.16 1.44 43.47 6.13
2524 5234 0.817634 GGCAACATAGTATGCGGGCA 60.818 55.000 17.89 0.00 43.47 5.36
2525 5235 0.307760 GCAACATAGTATGCGGGCAC 59.692 55.000 10.16 0.00 32.17 5.01
2546 6174 3.888930 ACCAAGGTTAGATGTGTGTTTGG 59.111 43.478 0.00 0.00 39.66 3.28
2555 6183 1.588674 TGTGTGTTTGGTTCTAGCCG 58.411 50.000 0.00 0.00 0.00 5.52
2564 6192 1.897133 TGGTTCTAGCCGCAACTAAGA 59.103 47.619 0.00 0.00 0.00 2.10
2569 6197 5.349809 GTTCTAGCCGCAACTAAGATAAGT 58.650 41.667 0.00 0.00 0.00 2.24
2570 6198 5.593679 TCTAGCCGCAACTAAGATAAGTT 57.406 39.130 0.00 0.00 40.33 2.66
2571 6199 5.974108 TCTAGCCGCAACTAAGATAAGTTT 58.026 37.500 0.00 0.00 37.61 2.66
2611 6239 4.576216 AGCTCCACAAGTCATAGATACG 57.424 45.455 0.00 0.00 0.00 3.06
2617 6246 7.652105 GCTCCACAAGTCATAGATACGAAATTA 59.348 37.037 0.00 0.00 0.00 1.40
2663 6292 5.363939 CCAAAGTGTGGCCAAGAATTTAAA 58.636 37.500 7.24 0.00 41.72 1.52
2667 6296 5.356426 AGTGTGGCCAAGAATTTAAACAAC 58.644 37.500 7.24 0.00 0.00 3.32
2677 6306 9.796120 CCAAGAATTTAAACAACACAAGTAAGA 57.204 29.630 0.00 0.00 0.00 2.10
2708 6337 4.327898 GTCAAAATAGTGTGGCAATGCATG 59.672 41.667 7.79 0.00 0.00 4.06
2709 6338 3.530265 AAATAGTGTGGCAATGCATGG 57.470 42.857 7.79 0.00 0.00 3.66
2716 6345 2.230992 TGTGGCAATGCATGGTAAAGAC 59.769 45.455 7.79 0.00 0.00 3.01
2718 6347 3.098377 TGGCAATGCATGGTAAAGACAT 58.902 40.909 7.79 0.00 0.00 3.06
2719 6348 4.097741 GTGGCAATGCATGGTAAAGACATA 59.902 41.667 7.79 0.00 0.00 2.29
2720 6349 4.097741 TGGCAATGCATGGTAAAGACATAC 59.902 41.667 7.79 0.00 0.00 2.39
2780 6410 8.348285 AGTTGCCTAGCATTTTCACTAAAATA 57.652 30.769 0.00 0.00 42.18 1.40
2858 6491 6.439599 CCTCTGGATATAGTAGTGTTCAACG 58.560 44.000 0.00 0.00 0.00 4.10
2859 6492 6.262496 CCTCTGGATATAGTAGTGTTCAACGA 59.738 42.308 0.00 0.00 0.00 3.85
2861 6494 6.827251 TCTGGATATAGTAGTGTTCAACGAGT 59.173 38.462 0.00 0.00 0.00 4.18
2865 6498 3.795623 AGTAGTGTTCAACGAGTGTGT 57.204 42.857 0.00 0.00 0.00 3.72
2867 6500 2.380084 AGTGTTCAACGAGTGTGTGT 57.620 45.000 0.00 0.00 0.00 3.72
2868 6501 1.999735 AGTGTTCAACGAGTGTGTGTG 59.000 47.619 0.00 0.00 0.00 3.82
2869 6502 1.996898 GTGTTCAACGAGTGTGTGTGA 59.003 47.619 0.00 0.00 0.00 3.58
2870 6503 2.029244 GTGTTCAACGAGTGTGTGTGAG 59.971 50.000 0.00 0.00 0.00 3.51
2871 6504 2.094442 TGTTCAACGAGTGTGTGTGAGA 60.094 45.455 0.00 0.00 0.00 3.27
2872 6505 3.123804 GTTCAACGAGTGTGTGTGAGAT 58.876 45.455 0.00 0.00 0.00 2.75
2879 6512 4.034048 ACGAGTGTGTGTGAGATTTTTCAC 59.966 41.667 0.00 0.00 46.02 3.18
2934 6595 2.154567 ATACTTGCGTACTCCCTCCA 57.845 50.000 0.00 0.00 0.00 3.86
2943 6604 3.504520 GCGTACTCCCTCCATTTCAAAAA 59.495 43.478 0.00 0.00 0.00 1.94
2986 7285 4.855388 GTGCTGACATTATGCAAACAGAAG 59.145 41.667 0.00 0.00 38.50 2.85
3039 7341 9.110502 TCTTGTTAAACCTTTCTTTTCTCTCTC 57.889 33.333 0.00 0.00 0.00 3.20
3067 7369 9.463443 GGATCATAACCAAATAAAATTTCTCGG 57.537 33.333 0.00 0.00 0.00 4.63
3069 7371 7.777095 TCATAACCAAATAAAATTTCTCGGGG 58.223 34.615 0.00 0.00 0.00 5.73
3088 7390 8.102047 TCTCGGGGTGTCAAAATAACTTTATAA 58.898 33.333 0.00 0.00 0.00 0.98
3092 7394 9.984190 GGGGTGTCAAAATAACTTTATAACAAA 57.016 29.630 0.00 0.00 0.00 2.83
3350 9416 0.108138 AGCACTAGCAATGTCGGGAC 60.108 55.000 0.00 0.00 45.49 4.46
3367 9433 7.340256 TGTCGGGACATATAAGGTGTATTTTT 58.660 34.615 0.00 0.00 36.21 1.94
3465 9778 5.350365 TCGTCACAAAAGTAGACATAATGGC 59.650 40.000 0.00 0.00 32.68 4.40
3490 9803 2.214376 TGGGCCACCATTGTTTCTAG 57.786 50.000 0.00 0.00 43.37 2.43
3503 9816 7.706179 ACCATTGTTTCTAGTTTCACATTTGTG 59.294 33.333 4.29 4.29 46.91 3.33
3507 9820 6.601613 TGTTTCTAGTTTCACATTTGTGGACT 59.398 34.615 18.05 18.05 45.65 3.85
3514 9827 2.100584 TCACATTTGTGGACTTTGTGCC 59.899 45.455 10.60 0.00 45.65 5.01
3539 9852 6.087291 CGAGCTTTGAACATGAGATTTTCAAC 59.913 38.462 0.00 0.00 38.61 3.18
3541 9854 7.439381 AGCTTTGAACATGAGATTTTCAACAT 58.561 30.769 0.00 0.00 38.61 2.71
3542 9855 7.384115 AGCTTTGAACATGAGATTTTCAACATG 59.616 33.333 0.00 0.00 43.56 3.21
3679 10000 2.740714 CGTGCAGCTAAGCGGGTTC 61.741 63.158 0.00 0.00 37.31 3.62
3690 10011 0.036875 AGCGGGTTCCCAAGAAGAAG 59.963 55.000 8.70 0.00 30.91 2.85
3704 10025 2.039084 AGAAGAAGGTGGCTTTCATCGT 59.961 45.455 0.00 0.00 30.04 3.73
3734 10055 3.593442 AAATGTTTCCTGACCTGGTCA 57.407 42.857 26.79 26.79 40.50 4.02
3742 10063 1.133884 CCTGACCTGGTCATCATGCAT 60.134 52.381 28.45 0.00 41.94 3.96
3771 10092 1.139989 CGGCGCCATGTAGAATACTG 58.860 55.000 28.98 0.12 43.54 2.74
3772 10093 1.269569 CGGCGCCATGTAGAATACTGA 60.270 52.381 28.98 0.00 43.54 3.41
3789 10110 2.295885 CTGATGGGTCAAGATGCTTCC 58.704 52.381 0.00 0.00 33.05 3.46
3827 10148 0.957395 CATCTGTGGAAACGCCTGCT 60.957 55.000 0.00 0.00 41.24 4.24
3834 10155 1.286880 GAAACGCCTGCTTGCATGT 59.713 52.632 1.14 0.00 0.00 3.21
3835 10156 0.318955 GAAACGCCTGCTTGCATGTT 60.319 50.000 1.14 0.00 0.00 2.71
3842 10163 2.030007 GCCTGCTTGCATGTTTTGACTA 60.030 45.455 1.14 0.00 0.00 2.59
3857 10178 3.170991 TGACTACTGACCTGGCTAACT 57.829 47.619 0.00 0.00 0.00 2.24
3858 10179 4.311520 TGACTACTGACCTGGCTAACTA 57.688 45.455 0.00 0.00 0.00 2.24
3859 10180 4.270834 TGACTACTGACCTGGCTAACTAG 58.729 47.826 0.00 0.00 0.00 2.57
3860 10181 4.018688 TGACTACTGACCTGGCTAACTAGA 60.019 45.833 0.00 0.00 0.00 2.43
3861 10182 4.931914 ACTACTGACCTGGCTAACTAGAA 58.068 43.478 0.00 0.00 0.00 2.10
3874 10195 9.685828 CTGGCTAACTAGAATAGAAACAGATAC 57.314 37.037 0.00 0.00 42.77 2.24
3965 10286 5.471116 TGACCAAGACAAGAATCACATTCAG 59.529 40.000 0.00 0.00 41.71 3.02
3970 10291 7.255381 CCAAGACAAGAATCACATTCAGAACTT 60.255 37.037 0.00 0.00 41.71 2.66
3977 10298 6.654161 AGAATCACATTCAGAACTTGAGAAGG 59.346 38.462 0.00 0.00 41.71 3.46
3979 10300 4.347876 TCACATTCAGAACTTGAGAAGGGA 59.652 41.667 0.00 0.00 37.07 4.20
3983 10304 5.470047 TTCAGAACTTGAGAAGGGAGTAC 57.530 43.478 0.00 0.00 37.07 2.73
3986 10307 5.602978 TCAGAACTTGAGAAGGGAGTACTTT 59.397 40.000 0.00 0.00 0.00 2.66
3987 10308 6.099845 TCAGAACTTGAGAAGGGAGTACTTTT 59.900 38.462 0.00 0.00 0.00 2.27
3988 10309 6.425417 CAGAACTTGAGAAGGGAGTACTTTTC 59.575 42.308 0.00 2.38 33.53 2.29
3989 10310 4.884247 ACTTGAGAAGGGAGTACTTTTCG 58.116 43.478 0.00 0.00 35.12 3.46
3990 10311 3.955650 TGAGAAGGGAGTACTTTTCGG 57.044 47.619 0.00 0.00 35.12 4.30
3991 10312 2.565834 TGAGAAGGGAGTACTTTTCGGG 59.434 50.000 0.00 0.00 35.12 5.14
3992 10313 1.907255 AGAAGGGAGTACTTTTCGGGG 59.093 52.381 0.00 0.00 0.00 5.73
3993 10314 1.904537 GAAGGGAGTACTTTTCGGGGA 59.095 52.381 0.00 0.00 0.00 4.81
3994 10315 2.034436 AGGGAGTACTTTTCGGGGAA 57.966 50.000 0.00 0.00 0.00 3.97
3995 10316 1.907255 AGGGAGTACTTTTCGGGGAAG 59.093 52.381 0.00 0.00 0.00 3.46
3997 10318 2.303890 GGGAGTACTTTTCGGGGAAGAA 59.696 50.000 0.00 0.00 0.00 2.52
3998 10319 3.244665 GGGAGTACTTTTCGGGGAAGAAA 60.245 47.826 0.00 0.00 38.23 2.52
3999 10320 4.001652 GGAGTACTTTTCGGGGAAGAAAG 58.998 47.826 0.00 0.00 40.66 2.62
4001 10322 5.489249 GAGTACTTTTCGGGGAAGAAAGAT 58.511 41.667 0.00 0.00 40.66 2.40
4002 10323 5.877491 AGTACTTTTCGGGGAAGAAAGATT 58.123 37.500 0.00 0.00 40.66 2.40
4003 10324 7.012661 AGTACTTTTCGGGGAAGAAAGATTA 57.987 36.000 0.00 0.00 40.66 1.75
4006 10327 5.938710 ACTTTTCGGGGAAGAAAGATTAGAC 59.061 40.000 2.45 0.00 40.66 2.59
4013 10334 7.985752 TCGGGGAAGAAAGATTAGACTAAAATC 59.014 37.037 0.00 0.00 34.23 2.17
4040 10361 5.822519 CCCTTCATTGCACTTAGTAGCATAA 59.177 40.000 9.49 5.52 40.94 1.90
4041 10362 6.488006 CCCTTCATTGCACTTAGTAGCATAAT 59.512 38.462 9.49 1.07 40.94 1.28
4042 10363 7.358066 CCTTCATTGCACTTAGTAGCATAATG 58.642 38.462 9.49 10.67 40.94 1.90
4043 10364 7.012704 CCTTCATTGCACTTAGTAGCATAATGT 59.987 37.037 9.49 0.00 40.94 2.71
4044 10365 8.956533 TTCATTGCACTTAGTAGCATAATGTA 57.043 30.769 9.49 4.50 40.94 2.29
4047 10368 9.817365 CATTGCACTTAGTAGCATAATGTAATC 57.183 33.333 9.49 0.00 40.94 1.75
4048 10369 8.956533 TTGCACTTAGTAGCATAATGTAATCA 57.043 30.769 9.49 0.00 40.94 2.57
4050 10371 8.204160 TGCACTTAGTAGCATAATGTAATCAGT 58.796 33.333 5.62 0.00 35.51 3.41
4061 10382 8.830580 GCATAATGTAATCAGTCATAGTTGTGT 58.169 33.333 0.00 0.00 0.00 3.72
4067 10388 9.772973 TGTAATCAGTCATAGTTGTGTAAAACT 57.227 29.630 0.00 0.00 42.89 2.66
4070 10391 9.772973 AATCAGTCATAGTTGTGTAAAACTACA 57.227 29.630 0.00 0.00 43.53 2.74
4071 10392 8.812147 TCAGTCATAGTTGTGTAAAACTACAG 57.188 34.615 0.00 0.00 43.53 2.74
4072 10393 8.418662 TCAGTCATAGTTGTGTAAAACTACAGT 58.581 33.333 0.00 0.00 43.53 3.55
4073 10394 9.687210 CAGTCATAGTTGTGTAAAACTACAGTA 57.313 33.333 0.00 0.00 43.53 2.74
4074 10395 9.909644 AGTCATAGTTGTGTAAAACTACAGTAG 57.090 33.333 6.00 6.00 43.53 2.57
4099 10420 3.788227 ATTCAGTAACTTGGGCTGTCA 57.212 42.857 0.00 0.00 0.00 3.58
4106 10427 2.280797 TTGGGCTGTCACTGACGC 60.281 61.111 14.07 14.07 34.95 5.19
4320 10748 1.079057 GCGACCAACTCCTTCTCCC 60.079 63.158 0.00 0.00 0.00 4.30
4511 10939 2.352805 CTCAGCCACCCCAACCTC 59.647 66.667 0.00 0.00 0.00 3.85
5343 11783 2.180017 GCTCCATGCCACGCTTTG 59.820 61.111 0.00 0.00 35.15 2.77
5375 11815 0.329931 ATATCCCACGTGCACCCAAA 59.670 50.000 10.91 0.00 0.00 3.28
5376 11816 0.322098 TATCCCACGTGCACCCAAAG 60.322 55.000 10.91 0.00 0.00 2.77
5425 11867 2.302587 GGGGGTGAAGTTTTCCATGA 57.697 50.000 0.00 0.00 0.00 3.07
5639 12102 1.392589 CCGCAGCATTGGAAATACCT 58.607 50.000 0.00 0.00 39.86 3.08
5641 12104 2.948979 CCGCAGCATTGGAAATACCTAA 59.051 45.455 0.00 0.00 39.86 2.69
5704 12169 7.361799 GGGAATACCTAACAGTTTTACAAGCTG 60.362 40.741 0.00 0.00 35.85 4.24
5784 12250 5.499004 AGAGCTTATCCACACTTGGTTTA 57.501 39.130 0.00 0.00 44.35 2.01
5785 12251 6.067217 AGAGCTTATCCACACTTGGTTTAT 57.933 37.500 0.00 0.00 44.35 1.40
5786 12252 7.195374 AGAGCTTATCCACACTTGGTTTATA 57.805 36.000 0.00 0.00 44.35 0.98
5808 12275 9.515226 TTATATTCCTATAAATGCTGAACCCAC 57.485 33.333 0.00 0.00 28.93 4.61
5878 12346 1.001641 CTTCCAACAGGGGCTCAGG 60.002 63.158 0.00 0.00 37.22 3.86
6180 12661 2.291741 AGGAAAAGCTTGAGTTCTTGCG 59.708 45.455 0.00 0.00 0.00 4.85
6215 12696 5.133221 AGTTTTGCAACTACTGGACTGAAT 58.867 37.500 11.53 0.00 41.81 2.57
6295 12777 1.779569 TCTTCGCCGAAGTCACTTTC 58.220 50.000 24.66 0.00 40.24 2.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.447663 CGATGACGATGGTGTGGCA 60.448 57.895 0.00 0.00 42.66 4.92
10 11 2.186903 GGTGGCGATGACGATGGT 59.813 61.111 0.00 0.00 42.66 3.55
19 20 2.591753 CATCCTGGTGGTGGCGAT 59.408 61.111 0.00 0.00 34.23 4.58
35 36 2.359169 GGCGAGATCTGGGACACCA 61.359 63.158 0.00 0.00 46.94 4.17
38 39 3.147595 CCGGCGAGATCTGGGACA 61.148 66.667 9.30 0.00 0.00 4.02
44 45 1.228583 TAGATGGCCGGCGAGATCT 60.229 57.895 27.51 27.51 0.00 2.75
51 52 1.598130 GATGGTGTAGATGGCCGGC 60.598 63.158 21.18 21.18 0.00 6.13
55 56 1.604185 GCTCGAGATGGTGTAGATGGC 60.604 57.143 18.75 0.00 0.00 4.40
57 58 1.000283 GGGCTCGAGATGGTGTAGATG 60.000 57.143 18.75 0.00 0.00 2.90
61 62 0.398522 ATGGGGCTCGAGATGGTGTA 60.399 55.000 18.75 0.00 0.00 2.90
71 72 4.918201 GAGGCGGAATGGGGCTCG 62.918 72.222 0.00 0.00 45.37 5.03
79 80 2.285368 TGTCTGGGGAGGCGGAAT 60.285 61.111 0.00 0.00 0.00 3.01
85 86 2.780010 AGATATTTGGTGTCTGGGGAGG 59.220 50.000 0.00 0.00 0.00 4.30
92 93 8.454106 CGATTTTTCTTCAGATATTTGGTGTCT 58.546 33.333 0.00 0.00 0.00 3.41
93 94 7.218963 GCGATTTTTCTTCAGATATTTGGTGTC 59.781 37.037 0.00 0.00 0.00 3.67
94 95 7.029563 GCGATTTTTCTTCAGATATTTGGTGT 58.970 34.615 0.00 0.00 0.00 4.16
113 114 1.453197 GGTCATTCCCCGGCGATTT 60.453 57.895 9.30 0.00 0.00 2.17
140 141 1.494766 CGACGACAATGTGTGGTGCA 61.495 55.000 0.50 0.00 39.42 4.57
141 142 1.204062 CGACGACAATGTGTGGTGC 59.796 57.895 0.50 0.00 39.42 5.01
164 165 0.776451 CGACGTTTTCTCGGTGTGAG 59.224 55.000 0.00 0.00 46.72 3.51
167 168 0.383231 ACTCGACGTTTTCTCGGTGT 59.617 50.000 0.00 0.00 34.94 4.16
172 173 1.061485 GCTCCACTCGACGTTTTCTC 58.939 55.000 0.00 0.00 0.00 2.87
174 175 1.192534 CAAGCTCCACTCGACGTTTTC 59.807 52.381 0.00 0.00 0.00 2.29
178 179 2.651361 CCAAGCTCCACTCGACGT 59.349 61.111 0.00 0.00 0.00 4.34
181 182 1.004560 CAAGCCAAGCTCCACTCGA 60.005 57.895 0.00 0.00 38.25 4.04
186 187 2.032528 CGACCAAGCCAAGCTCCA 59.967 61.111 0.00 0.00 38.25 3.86
196 197 1.987807 ATCCTCCCATGGCGACCAAG 61.988 60.000 6.09 0.00 36.95 3.61
207 208 3.527253 TCTCATTTTGCCTTATCCTCCCA 59.473 43.478 0.00 0.00 0.00 4.37
209 210 4.819088 GTCTCTCATTTTGCCTTATCCTCC 59.181 45.833 0.00 0.00 0.00 4.30
210 211 5.526846 CAGTCTCTCATTTTGCCTTATCCTC 59.473 44.000 0.00 0.00 0.00 3.71
221 222 6.383436 TCTCATCTCATCCAGTCTCTCATTTT 59.617 38.462 0.00 0.00 0.00 1.82
232 233 2.250031 CTCCCCTCTCATCTCATCCAG 58.750 57.143 0.00 0.00 0.00 3.86
236 237 3.634218 ATCACTCCCCTCTCATCTCAT 57.366 47.619 0.00 0.00 0.00 2.90
256 257 1.263356 CTTCCCCTCACCGACAACTA 58.737 55.000 0.00 0.00 0.00 2.24
259 260 2.221299 CCCTTCCCCTCACCGACAA 61.221 63.158 0.00 0.00 0.00 3.18
278 279 3.604065 GTGGAACCGAACTGACTTTTC 57.396 47.619 0.00 0.00 0.00 2.29
292 296 1.271163 TGTTCGATGGGAAGGTGGAAC 60.271 52.381 0.00 0.00 34.69 3.62
298 302 0.740737 GGCATTGTTCGATGGGAAGG 59.259 55.000 0.00 0.00 34.69 3.46
307 311 2.662791 CGTCAACTCTTGGCATTGTTCG 60.663 50.000 0.00 0.00 34.15 3.95
312 316 2.254546 TCACGTCAACTCTTGGCATT 57.745 45.000 0.00 0.00 34.15 3.56
344 348 0.452122 CGCCGGATTTTCAACACGAC 60.452 55.000 5.05 0.00 0.00 4.34
361 372 0.164217 TCGAACGTGTTAATTGCCGC 59.836 50.000 0.00 0.00 0.00 6.53
367 378 0.319727 TGGCCGTCGAACGTGTTAAT 60.320 50.000 0.00 0.00 40.58 1.40
373 384 1.729284 ATAATTTGGCCGTCGAACGT 58.271 45.000 0.00 0.00 40.58 3.99
374 385 2.817538 AATAATTTGGCCGTCGAACG 57.182 45.000 0.00 0.00 42.11 3.95
382 393 9.305925 CTTTTCAGAATCACTAATAATTTGGCC 57.694 33.333 0.00 0.00 0.00 5.36
396 407 8.640651 TGGATCACATTTTTCTTTTCAGAATCA 58.359 29.630 0.00 0.00 38.89 2.57
402 413 7.790027 TCCTTTGGATCACATTTTTCTTTTCA 58.210 30.769 0.00 0.00 0.00 2.69
426 437 4.838904 TTCCCTAAAAGACTAAGGCCTC 57.161 45.455 5.23 0.00 0.00 4.70
444 455 8.488651 TTTTATGACGTCCTTTCTAGAATTCC 57.511 34.615 14.12 0.00 0.00 3.01
452 463 8.827677 GCTACATATTTTTATGACGTCCTTTCT 58.172 33.333 14.12 0.00 0.00 2.52
453 464 8.068380 GGCTACATATTTTTATGACGTCCTTTC 58.932 37.037 14.12 0.00 0.00 2.62
454 465 7.773690 AGGCTACATATTTTTATGACGTCCTTT 59.226 33.333 14.12 0.24 0.00 3.11
455 466 7.280356 AGGCTACATATTTTTATGACGTCCTT 58.720 34.615 14.12 3.01 0.00 3.36
456 467 6.827727 AGGCTACATATTTTTATGACGTCCT 58.172 36.000 14.12 5.73 0.00 3.85
457 468 7.871463 AGTAGGCTACATATTTTTATGACGTCC 59.129 37.037 25.48 0.00 0.00 4.79
458 469 8.813643 AGTAGGCTACATATTTTTATGACGTC 57.186 34.615 25.48 9.11 0.00 4.34
459 470 8.418662 TGAGTAGGCTACATATTTTTATGACGT 58.581 33.333 25.48 0.00 0.00 4.34
460 471 8.812147 TGAGTAGGCTACATATTTTTATGACG 57.188 34.615 25.48 0.00 0.00 4.35
465 476 8.885722 CGGTTTTGAGTAGGCTACATATTTTTA 58.114 33.333 25.48 0.00 0.00 1.52
466 477 7.608761 TCGGTTTTGAGTAGGCTACATATTTTT 59.391 33.333 25.48 3.72 0.00 1.94
467 478 7.107542 TCGGTTTTGAGTAGGCTACATATTTT 58.892 34.615 25.48 4.48 0.00 1.82
468 479 6.646267 TCGGTTTTGAGTAGGCTACATATTT 58.354 36.000 25.48 5.24 0.00 1.40
469 480 6.229936 TCGGTTTTGAGTAGGCTACATATT 57.770 37.500 25.48 5.63 0.00 1.28
470 481 5.864418 TCGGTTTTGAGTAGGCTACATAT 57.136 39.130 25.48 6.02 0.00 1.78
471 482 5.664294 TTCGGTTTTGAGTAGGCTACATA 57.336 39.130 25.48 11.59 0.00 2.29
472 483 4.546829 TTCGGTTTTGAGTAGGCTACAT 57.453 40.909 25.48 11.34 0.00 2.29
473 484 4.546829 ATTCGGTTTTGAGTAGGCTACA 57.453 40.909 25.48 4.03 0.00 2.74
474 485 6.183360 GGTTAATTCGGTTTTGAGTAGGCTAC 60.183 42.308 16.93 16.93 0.00 3.58
475 486 5.876460 GGTTAATTCGGTTTTGAGTAGGCTA 59.124 40.000 0.00 0.00 0.00 3.93
476 487 4.698780 GGTTAATTCGGTTTTGAGTAGGCT 59.301 41.667 0.00 0.00 0.00 4.58
477 488 4.456566 TGGTTAATTCGGTTTTGAGTAGGC 59.543 41.667 0.00 0.00 0.00 3.93
478 489 6.016943 TGTTGGTTAATTCGGTTTTGAGTAGG 60.017 38.462 0.00 0.00 0.00 3.18
479 490 6.854381 GTGTTGGTTAATTCGGTTTTGAGTAG 59.146 38.462 0.00 0.00 0.00 2.57
480 491 6.543100 AGTGTTGGTTAATTCGGTTTTGAGTA 59.457 34.615 0.00 0.00 0.00 2.59
481 492 5.358725 AGTGTTGGTTAATTCGGTTTTGAGT 59.641 36.000 0.00 0.00 0.00 3.41
482 493 5.827666 AGTGTTGGTTAATTCGGTTTTGAG 58.172 37.500 0.00 0.00 0.00 3.02
483 494 5.838531 AGTGTTGGTTAATTCGGTTTTGA 57.161 34.783 0.00 0.00 0.00 2.69
484 495 6.418523 GGTTAGTGTTGGTTAATTCGGTTTTG 59.581 38.462 0.00 0.00 0.00 2.44
485 496 6.506147 GGTTAGTGTTGGTTAATTCGGTTTT 58.494 36.000 0.00 0.00 0.00 2.43
486 497 5.277925 CGGTTAGTGTTGGTTAATTCGGTTT 60.278 40.000 0.00 0.00 0.00 3.27
487 498 4.213906 CGGTTAGTGTTGGTTAATTCGGTT 59.786 41.667 0.00 0.00 0.00 4.44
488 499 3.747529 CGGTTAGTGTTGGTTAATTCGGT 59.252 43.478 0.00 0.00 0.00 4.69
489 500 3.747529 ACGGTTAGTGTTGGTTAATTCGG 59.252 43.478 0.00 0.00 0.00 4.30
490 501 4.143052 GGACGGTTAGTGTTGGTTAATTCG 60.143 45.833 0.00 0.00 0.00 3.34
491 502 4.756135 TGGACGGTTAGTGTTGGTTAATTC 59.244 41.667 0.00 0.00 0.00 2.17
492 503 4.516321 GTGGACGGTTAGTGTTGGTTAATT 59.484 41.667 0.00 0.00 0.00 1.40
493 504 4.067192 GTGGACGGTTAGTGTTGGTTAAT 58.933 43.478 0.00 0.00 0.00 1.40
494 505 3.465871 GTGGACGGTTAGTGTTGGTTAA 58.534 45.455 0.00 0.00 0.00 2.01
495 506 2.224257 GGTGGACGGTTAGTGTTGGTTA 60.224 50.000 0.00 0.00 0.00 2.85
496 507 1.475571 GGTGGACGGTTAGTGTTGGTT 60.476 52.381 0.00 0.00 0.00 3.67
497 508 0.107268 GGTGGACGGTTAGTGTTGGT 59.893 55.000 0.00 0.00 0.00 3.67
498 509 0.107081 TGGTGGACGGTTAGTGTTGG 59.893 55.000 0.00 0.00 0.00 3.77
499 510 2.178912 ATGGTGGACGGTTAGTGTTG 57.821 50.000 0.00 0.00 0.00 3.33
500 511 3.516300 TCATATGGTGGACGGTTAGTGTT 59.484 43.478 2.13 0.00 0.00 3.32
501 512 3.101437 TCATATGGTGGACGGTTAGTGT 58.899 45.455 2.13 0.00 0.00 3.55
502 513 3.812156 TCATATGGTGGACGGTTAGTG 57.188 47.619 2.13 0.00 0.00 2.74
503 514 6.488769 TTTATCATATGGTGGACGGTTAGT 57.511 37.500 2.13 0.00 0.00 2.24
504 515 7.979444 AATTTATCATATGGTGGACGGTTAG 57.021 36.000 2.13 0.00 0.00 2.34
505 516 8.215050 AGAAATTTATCATATGGTGGACGGTTA 58.785 33.333 2.13 0.00 0.00 2.85
506 517 7.013274 CAGAAATTTATCATATGGTGGACGGTT 59.987 37.037 2.13 0.00 0.00 4.44
507 518 6.486657 CAGAAATTTATCATATGGTGGACGGT 59.513 38.462 2.13 0.00 0.00 4.83
508 519 6.072508 CCAGAAATTTATCATATGGTGGACGG 60.073 42.308 2.13 0.00 0.00 4.79
509 520 6.568462 GCCAGAAATTTATCATATGGTGGACG 60.568 42.308 2.13 0.00 0.00 4.79
510 521 6.491403 AGCCAGAAATTTATCATATGGTGGAC 59.509 38.462 2.13 0.00 0.00 4.02
511 522 6.613699 AGCCAGAAATTTATCATATGGTGGA 58.386 36.000 2.13 0.00 0.00 4.02
512 523 6.348786 CGAGCCAGAAATTTATCATATGGTGG 60.349 42.308 2.13 0.00 0.00 4.61
513 524 6.605849 CGAGCCAGAAATTTATCATATGGTG 58.394 40.000 2.13 0.00 0.00 4.17
514 525 5.182001 GCGAGCCAGAAATTTATCATATGGT 59.818 40.000 2.13 0.00 0.00 3.55
515 526 5.413833 AGCGAGCCAGAAATTTATCATATGG 59.586 40.000 2.13 0.00 0.00 2.74
516 527 6.492007 AGCGAGCCAGAAATTTATCATATG 57.508 37.500 0.00 0.00 0.00 1.78
517 528 8.798859 ATTAGCGAGCCAGAAATTTATCATAT 57.201 30.769 0.00 0.00 0.00 1.78
518 529 9.719355 TTATTAGCGAGCCAGAAATTTATCATA 57.281 29.630 0.00 0.00 0.00 2.15
519 530 8.621532 TTATTAGCGAGCCAGAAATTTATCAT 57.378 30.769 0.00 0.00 0.00 2.45
520 531 7.715249 ACTTATTAGCGAGCCAGAAATTTATCA 59.285 33.333 0.00 0.00 0.00 2.15
521 532 8.089115 ACTTATTAGCGAGCCAGAAATTTATC 57.911 34.615 0.00 0.00 0.00 1.75
522 533 7.095607 CGACTTATTAGCGAGCCAGAAATTTAT 60.096 37.037 0.00 0.00 0.00 1.40
523 534 6.200286 CGACTTATTAGCGAGCCAGAAATTTA 59.800 38.462 0.00 0.00 0.00 1.40
524 535 5.006746 CGACTTATTAGCGAGCCAGAAATTT 59.993 40.000 0.00 0.00 0.00 1.82
525 536 4.508124 CGACTTATTAGCGAGCCAGAAATT 59.492 41.667 0.00 0.00 0.00 1.82
526 537 4.051922 CGACTTATTAGCGAGCCAGAAAT 58.948 43.478 0.00 0.00 0.00 2.17
527 538 3.444916 CGACTTATTAGCGAGCCAGAAA 58.555 45.455 0.00 0.00 0.00 2.52
528 539 2.798499 GCGACTTATTAGCGAGCCAGAA 60.798 50.000 0.00 0.00 0.00 3.02
529 540 1.269102 GCGACTTATTAGCGAGCCAGA 60.269 52.381 0.00 0.00 0.00 3.86
530 541 1.132588 GCGACTTATTAGCGAGCCAG 58.867 55.000 0.00 0.00 0.00 4.85
531 542 0.744874 AGCGACTTATTAGCGAGCCA 59.255 50.000 0.00 0.00 35.78 4.75
532 543 1.787731 GAAGCGACTTATTAGCGAGCC 59.212 52.381 0.00 0.00 35.78 4.70
533 544 2.469516 CAGAAGCGACTTATTAGCGAGC 59.530 50.000 0.00 0.00 35.78 5.03
534 545 3.953766 TCAGAAGCGACTTATTAGCGAG 58.046 45.455 0.00 0.00 35.78 5.03
535 546 4.365899 TTCAGAAGCGACTTATTAGCGA 57.634 40.909 0.00 0.00 35.78 4.93
536 547 5.248834 GTTTTCAGAAGCGACTTATTAGCG 58.751 41.667 0.00 0.00 35.78 4.26
537 548 5.061808 TCGTTTTCAGAAGCGACTTATTAGC 59.938 40.000 7.54 0.00 42.35 3.09
538 549 6.627690 TCGTTTTCAGAAGCGACTTATTAG 57.372 37.500 7.54 0.00 42.35 1.73
578 589 8.386264 ACCCAAAATATCATAATAGAGACTGGG 58.614 37.037 0.00 0.00 42.45 4.45
595 606 7.596407 TGTATTCCCATCCATTACCCAAAATA 58.404 34.615 0.00 0.00 0.00 1.40
610 621 6.041523 CGGGGAAAATATGTTTGTATTCCCAT 59.958 38.462 18.74 0.00 40.30 4.00
639 650 7.201635 GGCTCCATGCAAATATTTTCGATTTTT 60.202 33.333 0.00 0.00 45.15 1.94
640 651 6.258507 GGCTCCATGCAAATATTTTCGATTTT 59.741 34.615 0.00 0.00 45.15 1.82
641 652 5.754890 GGCTCCATGCAAATATTTTCGATTT 59.245 36.000 0.00 0.00 45.15 2.17
642 653 5.291971 GGCTCCATGCAAATATTTTCGATT 58.708 37.500 0.00 0.00 45.15 3.34
643 654 4.262164 GGGCTCCATGCAAATATTTTCGAT 60.262 41.667 0.00 0.00 45.15 3.59
644 655 3.068024 GGGCTCCATGCAAATATTTTCGA 59.932 43.478 0.00 0.00 45.15 3.71
645 656 3.181477 TGGGCTCCATGCAAATATTTTCG 60.181 43.478 0.00 0.00 45.15 3.46
646 657 4.122046 GTGGGCTCCATGCAAATATTTTC 58.878 43.478 0.00 0.00 45.15 2.29
647 658 3.430651 CGTGGGCTCCATGCAAATATTTT 60.431 43.478 0.00 0.00 45.15 1.82
722 733 1.005630 CGCAAATCCCCCGCAAAAA 60.006 52.632 0.00 0.00 0.00 1.94
723 734 2.203771 ACGCAAATCCCCCGCAAAA 61.204 52.632 0.00 0.00 0.00 2.44
724 735 2.598985 ACGCAAATCCCCCGCAAA 60.599 55.556 0.00 0.00 0.00 3.68
725 736 3.369400 CACGCAAATCCCCCGCAA 61.369 61.111 0.00 0.00 0.00 4.85
729 740 3.758931 GTGGCACGCAAATCCCCC 61.759 66.667 0.00 0.00 39.55 5.40
738 749 1.135972 CAACTATTCAGTGTGGCACGC 60.136 52.381 23.06 23.06 39.64 5.34
739 750 2.412870 TCAACTATTCAGTGTGGCACG 58.587 47.619 13.77 0.00 39.64 5.34
740 751 4.829064 TTTCAACTATTCAGTGTGGCAC 57.171 40.909 11.55 11.55 34.36 5.01
741 752 5.534278 TGATTTTCAACTATTCAGTGTGGCA 59.466 36.000 0.00 0.00 34.36 4.92
742 753 6.012658 TGATTTTCAACTATTCAGTGTGGC 57.987 37.500 0.00 0.00 34.36 5.01
816 827 7.640597 TGAGTCGATTCTCCTTTGACTATTA 57.359 36.000 9.50 0.00 37.84 0.98
817 828 6.531503 TGAGTCGATTCTCCTTTGACTATT 57.468 37.500 9.50 0.00 37.84 1.73
895 909 0.887933 CGGGACAAAATGGTCAAGGG 59.112 55.000 0.00 0.00 39.59 3.95
896 910 1.904287 TCGGGACAAAATGGTCAAGG 58.096 50.000 0.00 0.00 39.59 3.61
916 930 2.688958 GGTTGTAGGTGAGCTCGACTAT 59.311 50.000 17.04 9.03 0.00 2.12
945 960 1.172180 TGGTAGGTGCAGTTGCTTGC 61.172 55.000 5.62 2.14 44.33 4.01
976 994 1.782752 AGGGAGAGAGAGAGGGAGATG 59.217 57.143 0.00 0.00 0.00 2.90
978 996 1.221635 CAGGGAGAGAGAGAGGGAGA 58.778 60.000 0.00 0.00 0.00 3.71
979 997 1.221635 TCAGGGAGAGAGAGAGGGAG 58.778 60.000 0.00 0.00 0.00 4.30
980 998 1.687492 TTCAGGGAGAGAGAGAGGGA 58.313 55.000 0.00 0.00 0.00 4.20
981 999 2.541233 TTTCAGGGAGAGAGAGAGGG 57.459 55.000 0.00 0.00 0.00 4.30
982 1000 2.699846 CCATTTCAGGGAGAGAGAGAGG 59.300 54.545 0.00 0.00 0.00 3.69
983 1001 2.102925 GCCATTTCAGGGAGAGAGAGAG 59.897 54.545 0.00 0.00 0.00 3.20
1002 1020 0.902531 TGTACCAACTAGAGCCTGCC 59.097 55.000 0.00 0.00 0.00 4.85
1006 1024 4.081087 TGGAGATTTGTACCAACTAGAGCC 60.081 45.833 0.00 0.00 0.00 4.70
1062 1080 1.271054 GGAAGCAAGACAGCAAGGAGA 60.271 52.381 0.00 0.00 36.85 3.71
1182 1209 4.496336 AAGGCGATGGGGCAGCTC 62.496 66.667 0.00 0.00 45.36 4.09
1183 1210 4.809496 CAAGGCGATGGGGCAGCT 62.809 66.667 0.00 0.00 45.36 4.24
1214 1241 3.507009 GTAGCGAGACGGAGGCGT 61.507 66.667 0.00 0.00 0.00 5.68
1216 1243 1.064458 GAAGTAGCGAGACGGAGGC 59.936 63.158 0.00 0.00 0.00 4.70
1222 1249 0.520404 TCGTGTGGAAGTAGCGAGAC 59.480 55.000 0.00 0.00 0.00 3.36
1223 1250 1.199327 CTTCGTGTGGAAGTAGCGAGA 59.801 52.381 0.00 0.00 45.82 4.04
1224 1251 1.618861 CTTCGTGTGGAAGTAGCGAG 58.381 55.000 0.00 0.00 45.82 5.03
1225 1252 3.786809 CTTCGTGTGGAAGTAGCGA 57.213 52.632 0.00 0.00 45.82 4.93
1233 1260 2.758979 GTTATCTCCTCCTTCGTGTGGA 59.241 50.000 0.00 0.00 0.00 4.02
1234 1261 2.479730 CGTTATCTCCTCCTTCGTGTGG 60.480 54.545 0.00 0.00 0.00 4.17
1235 1262 2.798680 CGTTATCTCCTCCTTCGTGTG 58.201 52.381 0.00 0.00 0.00 3.82
1236 1263 1.134560 GCGTTATCTCCTCCTTCGTGT 59.865 52.381 0.00 0.00 0.00 4.49
1238 1265 0.745468 GGCGTTATCTCCTCCTTCGT 59.255 55.000 0.00 0.00 0.00 3.85
1240 1267 1.536284 CGTGGCGTTATCTCCTCCTTC 60.536 57.143 0.00 0.00 0.00 3.46
1241 1268 0.460311 CGTGGCGTTATCTCCTCCTT 59.540 55.000 0.00 0.00 0.00 3.36
1242 1269 0.683504 ACGTGGCGTTATCTCCTCCT 60.684 55.000 0.00 0.00 36.35 3.69
1285 3943 1.004200 GTACGGTGGAGTTGGTGGG 60.004 63.158 0.00 0.00 0.00 4.61
1348 4006 2.202864 GCCAGAGAGCGCCTTCTC 60.203 66.667 16.65 16.65 43.16 2.87
1366 4024 1.063951 GACGAGACACCGTAGTTGCG 61.064 60.000 0.00 0.00 43.49 4.85
1417 4075 1.135689 GCATAAGGACGTGTTGCCTTG 60.136 52.381 14.75 3.11 43.96 3.61
1418 4076 1.165270 GCATAAGGACGTGTTGCCTT 58.835 50.000 10.73 10.73 45.90 4.35
1419 4077 0.036164 TGCATAAGGACGTGTTGCCT 59.964 50.000 0.00 0.00 35.61 4.75
1422 4080 0.095245 CGCTGCATAAGGACGTGTTG 59.905 55.000 0.00 0.00 0.00 3.33
1424 4082 1.014044 CACGCTGCATAAGGACGTGT 61.014 55.000 0.00 0.00 46.56 4.49
1427 4085 2.703409 GCACGCTGCATAAGGACG 59.297 61.111 0.00 0.00 44.26 4.79
1451 4121 2.187946 GGAGCCTGGACATGACGG 59.812 66.667 0.00 0.00 0.00 4.79
1513 4192 1.674651 TAGCAGAGGAGACGCACGT 60.675 57.895 0.00 0.00 0.00 4.49
1522 4201 0.671472 TCGTTCGACGTAGCAGAGGA 60.671 55.000 0.00 0.00 43.14 3.71
1524 4203 0.165295 TGTCGTTCGACGTAGCAGAG 59.835 55.000 18.11 0.00 43.14 3.35
1527 4206 1.081906 GGTGTCGTTCGACGTAGCA 60.082 57.895 18.11 0.40 43.14 3.49
1550 4232 3.423154 GCAGAAACAGGTCCGGCG 61.423 66.667 0.00 0.00 0.00 6.46
1553 4235 2.030562 ACCGCAGAAACAGGTCCG 59.969 61.111 0.00 0.00 31.69 4.79
1554 4236 1.966451 CCACCGCAGAAACAGGTCC 60.966 63.158 0.00 0.00 35.85 4.46
1559 4241 0.250295 CTTCTCCCACCGCAGAAACA 60.250 55.000 0.00 0.00 0.00 2.83
1587 4269 1.594293 CAGGTCGTCGCACTTTGGT 60.594 57.895 0.00 0.00 0.00 3.67
1589 4271 1.956170 AGCAGGTCGTCGCACTTTG 60.956 57.895 0.00 0.00 0.00 2.77
1603 4285 0.530650 AACACTGTGGACGTCAGCAG 60.531 55.000 26.48 26.48 36.50 4.24
1611 4293 2.475111 CGTGTACATGAACACTGTGGAC 59.525 50.000 9.62 6.18 46.13 4.02
1617 4299 2.231478 CTCCTCCGTGTACATGAACACT 59.769 50.000 16.87 0.00 46.13 3.55
1624 4306 0.686769 GTCCCCTCCTCCGTGTACAT 60.687 60.000 0.00 0.00 0.00 2.29
1627 4309 2.044650 CGTCCCCTCCTCCGTGTA 60.045 66.667 0.00 0.00 0.00 2.90
1684 4366 3.343421 GGTGCACGTCCCGTTGAC 61.343 66.667 11.45 0.00 38.32 3.18
1748 4433 4.738998 TCTCCCCGGACGGCGTTA 62.739 66.667 16.19 0.00 0.00 3.18
1835 4520 2.034812 GTCAGAAGTCAAGACTCACCGT 59.965 50.000 2.78 0.00 41.58 4.83
1891 4585 3.701542 GAGATATATCGTGGGCTGATCCA 59.298 47.826 7.08 0.00 36.21 3.41
2036 4741 5.608449 AGTAGCCGTCTAGTTTGAGTTTTT 58.392 37.500 0.00 0.00 0.00 1.94
2037 4742 5.211174 AGTAGCCGTCTAGTTTGAGTTTT 57.789 39.130 0.00 0.00 0.00 2.43
2068 4773 5.613358 AAGCGTTGTCTGAAATCCTTTAG 57.387 39.130 0.00 0.00 0.00 1.85
2073 4778 4.489679 AAGAAAGCGTTGTCTGAAATCC 57.510 40.909 0.00 0.00 0.00 3.01
2092 4797 0.605319 TGCCTAGACAACCCGCAAAG 60.605 55.000 0.00 0.00 0.00 2.77
2115 4820 6.155827 CCGGAGCAATTTTACTTTGATTTGA 58.844 36.000 0.00 0.00 0.00 2.69
2136 4844 1.378382 TGATCACCCACAATGCCGG 60.378 57.895 0.00 0.00 0.00 6.13
2138 4846 1.098050 GACTGATCACCCACAATGCC 58.902 55.000 0.00 0.00 0.00 4.40
2144 4852 1.338136 ATCCGGGACTGATCACCCAC 61.338 60.000 18.85 2.51 45.83 4.61
2146 4854 0.680061 GTATCCGGGACTGATCACCC 59.320 60.000 10.77 10.77 42.43 4.61
2148 4856 4.281182 ACATTAGTATCCGGGACTGATCAC 59.719 45.833 17.34 0.00 33.47 3.06
2151 4859 3.506455 CGACATTAGTATCCGGGACTGAT 59.494 47.826 17.34 12.76 36.06 2.90
2159 4867 2.607187 GGCATCCGACATTAGTATCCG 58.393 52.381 0.00 0.00 0.00 4.18
2173 4881 0.461135 AACATTGAATGGCGGCATCC 59.539 50.000 25.97 14.13 33.60 3.51
2174 4882 3.435105 TTAACATTGAATGGCGGCATC 57.565 42.857 25.97 17.93 33.60 3.91
2176 4884 2.669670 CGTTTAACATTGAATGGCGGCA 60.670 45.455 16.34 16.34 33.60 5.69
2178 4886 1.917303 GCGTTTAACATTGAATGGCGG 59.083 47.619 10.27 0.00 33.60 6.13
2219 4927 7.315247 TGTGTAAATTCCATCCGATTAGTTG 57.685 36.000 0.00 0.00 0.00 3.16
2226 4934 3.437395 CGGTTTGTGTAAATTCCATCCGA 59.563 43.478 0.00 0.00 36.97 4.55
2231 4939 2.294791 CTGCCGGTTTGTGTAAATTCCA 59.705 45.455 1.90 0.00 0.00 3.53
2233 4941 3.500680 TCTCTGCCGGTTTGTGTAAATTC 59.499 43.478 1.90 0.00 0.00 2.17
2235 4943 3.134574 TCTCTGCCGGTTTGTGTAAAT 57.865 42.857 1.90 0.00 0.00 1.40
2237 4945 2.851263 ATCTCTGCCGGTTTGTGTAA 57.149 45.000 1.90 0.00 0.00 2.41
2238 4946 2.037902 TGAATCTCTGCCGGTTTGTGTA 59.962 45.455 1.90 0.00 0.00 2.90
2239 4947 1.202758 TGAATCTCTGCCGGTTTGTGT 60.203 47.619 1.90 0.00 0.00 3.72
2240 4948 1.522668 TGAATCTCTGCCGGTTTGTG 58.477 50.000 1.90 0.00 0.00 3.33
2241 4949 2.290260 TGATGAATCTCTGCCGGTTTGT 60.290 45.455 1.90 0.00 0.00 2.83
2242 4950 2.358957 TGATGAATCTCTGCCGGTTTG 58.641 47.619 1.90 0.00 0.00 2.93
2245 4953 2.787473 TTTGATGAATCTCTGCCGGT 57.213 45.000 1.90 0.00 0.00 5.28
2246 4954 4.337555 AGAATTTTGATGAATCTCTGCCGG 59.662 41.667 0.00 0.00 0.00 6.13
2247 4955 5.065602 TCAGAATTTTGATGAATCTCTGCCG 59.934 40.000 0.00 0.00 31.57 5.69
2248 4956 6.446781 TCAGAATTTTGATGAATCTCTGCC 57.553 37.500 0.00 0.00 31.57 4.85
2249 4957 8.291032 CCTATCAGAATTTTGATGAATCTCTGC 58.709 37.037 19.06 0.00 38.25 4.26
2250 4958 9.557061 TCCTATCAGAATTTTGATGAATCTCTG 57.443 33.333 19.06 0.00 38.25 3.35
2286 4994 9.865321 AAATTTGCATGCTATGTATGGATAATC 57.135 29.630 20.33 0.00 0.00 1.75
2289 4997 9.519191 ACTAAATTTGCATGCTATGTATGGATA 57.481 29.630 20.33 0.00 0.00 2.59
2312 5020 2.752903 TGAGCATTGTCGCAGTAGACTA 59.247 45.455 0.00 0.00 41.47 2.59
2321 5029 2.169179 GTCGAATTTGAGCATTGTCGC 58.831 47.619 0.00 0.00 0.00 5.19
2323 5031 3.663908 CTCGTCGAATTTGAGCATTGTC 58.336 45.455 0.00 0.00 0.00 3.18
2341 5050 0.174845 TGGACATCCGGTTAAGCTCG 59.825 55.000 0.00 0.00 39.43 5.03
2345 5054 3.408634 ACTTGTTGGACATCCGGTTAAG 58.591 45.455 0.00 0.00 39.43 1.85
2351 5060 4.822036 TGTAAAACTTGTTGGACATCCG 57.178 40.909 0.00 0.00 39.43 4.18
2352 5061 6.325919 TGATGTAAAACTTGTTGGACATCC 57.674 37.500 23.43 14.11 41.49 3.51
2370 5079 2.540515 GACGACATGATCCGTTGATGT 58.459 47.619 0.00 1.55 39.30 3.06
2377 5086 0.806102 GTGTGGGACGACATGATCCG 60.806 60.000 0.00 2.36 35.67 4.18
2388 5097 2.200373 AAAGGCAGTATGTGTGGGAC 57.800 50.000 0.00 0.00 39.31 4.46
2411 5120 4.823157 TGAAGGGACGATATGTTTTCGAA 58.177 39.130 0.00 0.00 39.81 3.71
2413 5122 3.001330 GCTGAAGGGACGATATGTTTTCG 59.999 47.826 0.00 0.00 42.20 3.46
2414 5123 4.192317 AGCTGAAGGGACGATATGTTTTC 58.808 43.478 0.00 0.00 0.00 2.29
2415 5124 4.222124 AGCTGAAGGGACGATATGTTTT 57.778 40.909 0.00 0.00 0.00 2.43
2417 5126 3.197766 TGAAGCTGAAGGGACGATATGTT 59.802 43.478 0.00 0.00 0.00 2.71
2419 5128 3.459232 TGAAGCTGAAGGGACGATATG 57.541 47.619 0.00 0.00 0.00 1.78
2420 5129 3.007398 GGATGAAGCTGAAGGGACGATAT 59.993 47.826 0.00 0.00 0.00 1.63
2421 5130 2.365617 GGATGAAGCTGAAGGGACGATA 59.634 50.000 0.00 0.00 0.00 2.92
2422 5131 1.139853 GGATGAAGCTGAAGGGACGAT 59.860 52.381 0.00 0.00 0.00 3.73
2423 5132 0.537188 GGATGAAGCTGAAGGGACGA 59.463 55.000 0.00 0.00 0.00 4.20
2425 5134 2.087646 GTTGGATGAAGCTGAAGGGAC 58.912 52.381 0.00 0.00 0.00 4.46
2426 5135 1.704628 TGTTGGATGAAGCTGAAGGGA 59.295 47.619 0.00 0.00 0.00 4.20
2453 5163 6.014840 GGACAGAGGGACGGTCATTTATATAA 60.015 42.308 10.76 0.00 43.53 0.98
2457 5167 2.434702 GGACAGAGGGACGGTCATTTAT 59.565 50.000 10.76 0.00 43.53 1.40
2464 5174 4.296729 ACGGGACAGAGGGACGGT 62.297 66.667 0.00 0.00 0.00 4.83
2465 5175 3.760035 CACGGGACAGAGGGACGG 61.760 72.222 0.00 0.00 0.00 4.79
2508 5218 0.544223 TGGTGCCCGCATACTATGTT 59.456 50.000 0.00 0.00 0.00 2.71
2513 5223 2.137177 AACCTTGGTGCCCGCATACT 62.137 55.000 0.00 0.00 0.00 2.12
2514 5224 0.393267 TAACCTTGGTGCCCGCATAC 60.393 55.000 0.00 0.00 0.00 2.39
2516 5226 1.378514 CTAACCTTGGTGCCCGCAT 60.379 57.895 0.00 0.00 0.00 4.73
2519 5229 0.035439 ACATCTAACCTTGGTGCCCG 60.035 55.000 0.00 0.00 0.00 6.13
2520 5230 1.271926 ACACATCTAACCTTGGTGCCC 60.272 52.381 0.00 0.00 32.89 5.36
2522 5232 2.504367 ACACACATCTAACCTTGGTGC 58.496 47.619 0.00 0.00 32.89 5.01
2524 5234 3.888930 CCAAACACACATCTAACCTTGGT 59.111 43.478 0.00 0.00 0.00 3.67
2525 5235 3.888930 ACCAAACACACATCTAACCTTGG 59.111 43.478 0.00 0.00 38.41 3.61
2526 5236 5.299279 AGAACCAAACACACATCTAACCTTG 59.701 40.000 0.00 0.00 0.00 3.61
2529 5239 5.106673 GCTAGAACCAAACACACATCTAACC 60.107 44.000 0.00 0.00 0.00 2.85
2534 6162 2.159627 CGGCTAGAACCAAACACACATC 59.840 50.000 0.00 0.00 0.00 3.06
2535 6163 2.151202 CGGCTAGAACCAAACACACAT 58.849 47.619 0.00 0.00 0.00 3.21
2546 6174 5.349809 ACTTATCTTAGTTGCGGCTAGAAC 58.650 41.667 0.00 0.00 0.00 3.01
2587 6215 5.915758 CGTATCTATGACTTGTGGAGCTTAC 59.084 44.000 0.00 0.00 0.00 2.34
2594 6222 9.476202 TCATAATTTCGTATCTATGACTTGTGG 57.524 33.333 0.00 0.00 0.00 4.17
2617 6246 5.105595 GGCTTGCTTTAGGAAATCTTGTCAT 60.106 40.000 0.00 0.00 0.00 3.06
2629 6258 2.288395 CCACACTTTGGCTTGCTTTAGG 60.288 50.000 0.00 0.00 39.07 2.69
2650 6279 6.902224 ACTTGTGTTGTTTAAATTCTTGGC 57.098 33.333 0.00 0.00 0.00 4.52
2663 6292 4.640201 ACATGCTTGTCTTACTTGTGTTGT 59.360 37.500 0.00 0.00 0.00 3.32
2677 6306 4.559300 GCCACACTATTTTGACATGCTTGT 60.559 41.667 4.68 4.68 39.32 3.16
2694 6323 2.230992 TCTTTACCATGCATTGCCACAC 59.769 45.455 6.12 0.00 0.00 3.82
2708 6337 9.950680 CATGTTTGGATTATGTATGTCTTTACC 57.049 33.333 0.00 0.00 0.00 2.85
2709 6338 9.450807 GCATGTTTGGATTATGTATGTCTTTAC 57.549 33.333 0.00 0.00 0.00 2.01
2716 6345 5.787953 TGGGCATGTTTGGATTATGTATG 57.212 39.130 0.00 0.00 0.00 2.39
2718 6347 7.949565 AGATTATGGGCATGTTTGGATTATGTA 59.050 33.333 0.00 0.00 0.00 2.29
2719 6348 6.783977 AGATTATGGGCATGTTTGGATTATGT 59.216 34.615 0.00 0.00 0.00 2.29
2720 6349 7.235935 AGATTATGGGCATGTTTGGATTATG 57.764 36.000 0.00 0.00 0.00 1.90
2780 6410 9.747898 TCTAATTGTACATTTCCTAATTGGTGT 57.252 29.630 6.28 0.00 37.07 4.16
2837 6470 6.913132 CACTCGTTGAACACTACTATATCCAG 59.087 42.308 0.00 0.00 0.00 3.86
2839 6472 6.691818 CACACTCGTTGAACACTACTATATCC 59.308 42.308 0.00 0.00 0.00 2.59
2858 6491 5.741388 AGTGAAAAATCTCACACACACTC 57.259 39.130 6.51 0.00 46.81 3.51
2859 6492 7.807977 AATAGTGAAAAATCTCACACACACT 57.192 32.000 6.51 0.00 46.81 3.55
2861 6494 8.219546 TGAAATAGTGAAAAATCTCACACACA 57.780 30.769 6.51 0.00 46.81 3.72
2865 6498 8.675705 TGTCTGAAATAGTGAAAAATCTCACA 57.324 30.769 6.51 0.00 46.81 3.58
2867 6500 9.342308 AGTTGTCTGAAATAGTGAAAAATCTCA 57.658 29.630 0.00 0.00 0.00 3.27
2879 6512 8.386606 GTGCTCATTCTTAGTTGTCTGAAATAG 58.613 37.037 0.00 0.00 0.00 1.73
2943 6604 7.013274 TCAGCACAAAACTAAAGCTTCAAGTAT 59.987 33.333 13.21 5.09 32.35 2.12
3065 7367 7.818642 TGTTATAAAGTTATTTTGACACCCCG 58.181 34.615 0.00 0.00 0.00 5.73
3136 7506 8.454106 CAGCATCTACAACACTAAATTAGCTTT 58.546 33.333 0.00 0.00 0.00 3.51
3323 9113 5.739161 CCGACATTGCTAGTGCTAAAATTTC 59.261 40.000 0.00 0.00 40.48 2.17
3350 9416 8.846211 CCCCACAGTAAAAATACACCTTATATG 58.154 37.037 0.00 0.00 0.00 1.78
3367 9433 2.638855 ACCGACAAAATACCCCACAGTA 59.361 45.455 0.00 0.00 0.00 2.74
3419 9732 6.866248 ACGAAAAATTGCTATCGTTGGATTTT 59.134 30.769 0.00 0.00 45.33 1.82
3429 9742 7.623268 ACTTTTGTGACGAAAAATTGCTATC 57.377 32.000 0.00 0.00 0.00 2.08
3503 9816 0.040067 CAAAGCTCGGCACAAAGTCC 60.040 55.000 0.00 0.00 0.00 3.85
3507 9820 1.098869 TGTTCAAAGCTCGGCACAAA 58.901 45.000 0.00 0.00 0.00 2.83
3514 9827 5.692814 TGAAAATCTCATGTTCAAAGCTCG 58.307 37.500 0.00 0.00 0.00 5.03
3539 9852 9.112725 TCCTGTTTGTCATAACTCATAATCATG 57.887 33.333 0.00 0.00 0.00 3.07
3541 9854 9.685276 ATTCCTGTTTGTCATAACTCATAATCA 57.315 29.630 0.00 0.00 0.00 2.57
3546 9859 5.065218 GCGATTCCTGTTTGTCATAACTCAT 59.935 40.000 0.00 0.00 0.00 2.90
3547 9860 4.391830 GCGATTCCTGTTTGTCATAACTCA 59.608 41.667 0.00 0.00 0.00 3.41
3548 9861 4.201822 GGCGATTCCTGTTTGTCATAACTC 60.202 45.833 0.00 0.00 0.00 3.01
3550 9863 3.689649 AGGCGATTCCTGTTTGTCATAAC 59.310 43.478 0.00 0.00 45.54 1.89
3661 9982 2.740714 GAACCCGCTTAGCTGCACG 61.741 63.158 1.02 0.00 0.00 5.34
3679 10000 1.889170 GAAAGCCACCTTCTTCTTGGG 59.111 52.381 0.00 0.00 0.00 4.12
3690 10011 0.109597 CTGCAACGATGAAAGCCACC 60.110 55.000 0.00 0.00 0.00 4.61
3704 10025 5.452636 GGTCAGGAAACATTTTTACCTGCAA 60.453 40.000 13.59 1.73 45.11 4.08
3734 10055 2.286833 GCCGTGTACGTAAATGCATGAT 59.713 45.455 0.00 0.00 37.74 2.45
3742 10063 1.079956 ATGGCGCCGTGTACGTAAA 60.080 52.632 23.19 0.00 37.74 2.01
3771 10092 1.303309 CGGAAGCATCTTGACCCATC 58.697 55.000 0.00 0.00 0.00 3.51
3772 10093 0.107017 CCGGAAGCATCTTGACCCAT 60.107 55.000 0.00 0.00 0.00 4.00
3827 10148 4.275689 CAGGTCAGTAGTCAAAACATGCAA 59.724 41.667 0.00 0.00 0.00 4.08
3834 10155 4.347000 AGTTAGCCAGGTCAGTAGTCAAAA 59.653 41.667 0.00 0.00 0.00 2.44
3835 10156 3.901844 AGTTAGCCAGGTCAGTAGTCAAA 59.098 43.478 0.00 0.00 0.00 2.69
3842 10163 5.767670 TCTATTCTAGTTAGCCAGGTCAGT 58.232 41.667 0.00 0.00 0.00 3.41
3858 10179 9.507329 TTCAGCTTTTGTATCTGTTTCTATTCT 57.493 29.630 0.00 0.00 0.00 2.40
3861 10182 8.734386 CCTTTCAGCTTTTGTATCTGTTTCTAT 58.266 33.333 0.00 0.00 0.00 1.98
3874 10195 3.557686 CCCATTTCCCCTTTCAGCTTTTG 60.558 47.826 0.00 0.00 0.00 2.44
3929 10250 4.162592 TGGTCAAGCCAAGCAGTG 57.837 55.556 0.00 0.00 45.94 3.66
3965 10286 5.405873 CGAAAAGTACTCCCTTCTCAAGTTC 59.594 44.000 0.00 0.00 0.00 3.01
3970 10291 2.565834 CCCGAAAAGTACTCCCTTCTCA 59.434 50.000 0.00 0.00 0.00 3.27
3977 10298 3.690475 TTCTTCCCCGAAAAGTACTCC 57.310 47.619 0.00 0.00 0.00 3.85
3979 10300 4.968971 TCTTTCTTCCCCGAAAAGTACT 57.031 40.909 0.00 0.00 32.95 2.73
3983 10304 6.174049 AGTCTAATCTTTCTTCCCCGAAAAG 58.826 40.000 0.00 0.00 32.95 2.27
3986 10307 6.862469 TTAGTCTAATCTTTCTTCCCCGAA 57.138 37.500 0.00 0.00 0.00 4.30
3987 10308 6.862469 TTTAGTCTAATCTTTCTTCCCCGA 57.138 37.500 0.00 0.00 0.00 5.14
3988 10309 7.769044 TGATTTTAGTCTAATCTTTCTTCCCCG 59.231 37.037 0.00 0.00 34.00 5.73
3989 10310 9.462606 TTGATTTTAGTCTAATCTTTCTTCCCC 57.537 33.333 0.00 0.00 34.00 4.81
3997 10318 9.981460 ATGAAGGGTTGATTTTAGTCTAATCTT 57.019 29.630 0.00 0.00 34.00 2.40
3998 10319 9.981460 AATGAAGGGTTGATTTTAGTCTAATCT 57.019 29.630 0.00 0.00 34.00 2.40
4001 10322 7.450014 TGCAATGAAGGGTTGATTTTAGTCTAA 59.550 33.333 0.00 0.00 0.00 2.10
4002 10323 6.945435 TGCAATGAAGGGTTGATTTTAGTCTA 59.055 34.615 0.00 0.00 0.00 2.59
4003 10324 5.774690 TGCAATGAAGGGTTGATTTTAGTCT 59.225 36.000 0.00 0.00 0.00 3.24
4006 10327 6.029346 AGTGCAATGAAGGGTTGATTTTAG 57.971 37.500 0.00 0.00 0.00 1.85
4013 10334 4.142600 GCTACTAAGTGCAATGAAGGGTTG 60.143 45.833 0.00 0.00 0.00 3.77
4017 10338 6.925610 TTATGCTACTAAGTGCAATGAAGG 57.074 37.500 0.00 0.00 42.74 3.46
4018 10339 7.923888 ACATTATGCTACTAAGTGCAATGAAG 58.076 34.615 11.24 0.00 42.74 3.02
4019 10340 7.864108 ACATTATGCTACTAAGTGCAATGAA 57.136 32.000 11.24 3.82 42.74 2.57
4021 10342 9.817365 GATTACATTATGCTACTAAGTGCAATG 57.183 33.333 0.00 0.00 42.74 2.82
4041 10362 9.772973 AGTTTTACACAACTATGACTGATTACA 57.227 29.630 0.00 0.00 35.10 2.41
4044 10365 9.772973 TGTAGTTTTACACAACTATGACTGATT 57.227 29.630 0.00 0.00 40.55 2.57
4047 10368 8.589335 ACTGTAGTTTTACACAACTATGACTG 57.411 34.615 0.00 0.00 40.55 3.51
4048 10369 9.909644 CTACTGTAGTTTTACACAACTATGACT 57.090 33.333 6.67 0.00 40.55 3.41
4068 10389 7.985752 GCCCAAGTTACTGAATATTACTACTGT 59.014 37.037 0.00 0.00 0.00 3.55
4070 10391 8.204836 CAGCCCAAGTTACTGAATATTACTACT 58.795 37.037 0.00 0.00 33.10 2.57
4071 10392 7.985752 ACAGCCCAAGTTACTGAATATTACTAC 59.014 37.037 6.71 0.00 35.38 2.73
4072 10393 8.086143 ACAGCCCAAGTTACTGAATATTACTA 57.914 34.615 6.71 0.00 35.38 1.82
4073 10394 6.958767 ACAGCCCAAGTTACTGAATATTACT 58.041 36.000 6.71 0.00 35.38 2.24
4074 10395 6.821665 TGACAGCCCAAGTTACTGAATATTAC 59.178 38.462 6.71 0.00 35.38 1.89
4076 10397 5.648092 GTGACAGCCCAAGTTACTGAATATT 59.352 40.000 6.71 0.00 35.38 1.28
4077 10398 5.045578 AGTGACAGCCCAAGTTACTGAATAT 60.046 40.000 6.71 0.00 34.93 1.28
4078 10399 4.286032 AGTGACAGCCCAAGTTACTGAATA 59.714 41.667 6.71 0.00 34.93 1.75
4079 10400 3.073062 AGTGACAGCCCAAGTTACTGAAT 59.927 43.478 6.71 0.00 34.93 2.57
4099 10420 5.006153 TGCTATTAACATACAGCGTCAGT 57.994 39.130 0.00 0.00 36.81 3.41
4106 10427 5.232202 CACGACACCTGCTATTAACATACAG 59.768 44.000 0.00 0.00 0.00 2.74
5189 11629 4.101448 GTCATGCCGGAGCCTGGT 62.101 66.667 5.05 0.00 38.69 4.00
5343 11783 3.064931 GTGGGATATAACTTGGCTACGC 58.935 50.000 0.00 0.00 0.00 4.42
5425 11867 6.769512 ACTGTACAGGTACAACAATCTTCAT 58.230 36.000 26.12 0.00 44.47 2.57
5462 11909 1.334869 CCTGTGAGTTGTTCTTGTGCC 59.665 52.381 0.00 0.00 0.00 5.01
5704 12169 2.285834 CGGATAAGTTGTGCGATTCTGC 60.286 50.000 7.77 0.00 31.71 4.26
5784 12250 6.655003 CGTGGGTTCAGCATTTATAGGAATAT 59.345 38.462 0.00 0.00 0.00 1.28
5785 12251 5.995282 CGTGGGTTCAGCATTTATAGGAATA 59.005 40.000 0.00 0.00 0.00 1.75
5786 12252 4.821805 CGTGGGTTCAGCATTTATAGGAAT 59.178 41.667 0.00 0.00 0.00 3.01
5808 12275 3.452786 TGCCTCCTTCGCTCTCCG 61.453 66.667 0.00 0.00 38.61 4.63
5878 12346 7.279758 CCTGTATTCTTCTTCTTCAGTTGATCC 59.720 40.741 0.00 0.00 0.00 3.36
6180 12661 4.022849 AGTTGCAAAACTAGTGATCCTTGC 60.023 41.667 0.00 14.88 39.62 4.01
6215 12696 6.039717 AGCTTTTATTCAAAACTGCAGTCTCA 59.960 34.615 21.95 3.14 30.88 3.27
6295 12777 8.554528 ACTGCAGAATGTTTTATTAGATCATCG 58.445 33.333 23.35 0.00 39.31 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.