Multiple sequence alignment - TraesCS5B01G069700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G069700 chr5B 100.000 3239 0 0 1 3239 79765355 79768593 0.000000e+00 5982
1 TraesCS5B01G069700 chr5B 81.034 174 29 2 2880 3053 274353436 274353267 5.640000e-28 135
2 TraesCS5B01G069700 chr5B 80.899 178 26 5 2880 3053 274470672 274470499 2.030000e-27 134
3 TraesCS5B01G069700 chr5A 93.686 2249 83 23 548 2758 67326590 67328817 0.000000e+00 3312
4 TraesCS5B01G069700 chr5A 88.953 516 49 6 3 514 67326009 67326520 5.900000e-177 630
5 TraesCS5B01G069700 chr5D 93.472 2252 77 32 536 2758 72870953 72873163 0.000000e+00 3280
6 TraesCS5B01G069700 chr5D 89.303 402 39 3 41 441 72870557 72870955 4.820000e-138 501
7 TraesCS5B01G069700 chr6D 81.381 333 47 9 2858 3187 63133682 63134002 1.150000e-64 257
8 TraesCS5B01G069700 chr2B 80.565 283 42 7 2880 3156 157692626 157692351 4.240000e-49 206
9 TraesCS5B01G069700 chr1D 79.470 302 43 7 2858 3155 402123512 402123226 2.550000e-46 196
10 TraesCS5B01G069700 chr7D 77.879 330 52 16 2865 3187 52259736 52260051 5.520000e-43 185
11 TraesCS5B01G069700 chr2D 80.738 244 41 3 2858 3099 40515709 40515948 5.520000e-43 185
12 TraesCS5B01G069700 chr3A 77.027 296 56 10 2866 3156 720843733 720844021 3.340000e-35 159
13 TraesCS5B01G069700 chr3A 81.006 179 25 5 2871 3046 631704970 631704798 2.030000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G069700 chr5B 79765355 79768593 3238 False 5982.0 5982 100.0000 1 3239 1 chr5B.!!$F1 3238
1 TraesCS5B01G069700 chr5A 67326009 67328817 2808 False 1971.0 3312 91.3195 3 2758 2 chr5A.!!$F1 2755
2 TraesCS5B01G069700 chr5D 72870557 72873163 2606 False 1890.5 3280 91.3875 41 2758 2 chr5D.!!$F1 2717

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 367 0.259065 AGGCTCCGTCTATCTGGTGA 59.741 55.0 0.00 0.0 0.00 4.02 F
975 1031 0.315251 CACTGAGACGGTGAGAAGCA 59.685 55.0 4.92 0.0 42.79 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 1806 0.614979 CGGGGTGGAAGAAGAGGAGA 60.615 60.0 0.00 0.0 0.0 3.71 R
2810 2906 0.108804 TAGCGCTCGACCTCCAAAAG 60.109 55.0 16.34 0.0 0.0 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.347817 GGCACGCGAGAGAAGAAGTG 61.348 60.000 15.93 0.00 0.00 3.16
94 95 1.075374 AGGTGGAAACAAGGCATGCTA 59.925 47.619 18.92 0.00 46.06 3.49
131 132 9.708222 CAATGTAGATGCAACTATTTTACACTC 57.292 33.333 7.00 0.00 0.00 3.51
132 133 7.520119 TGTAGATGCAACTATTTTACACTCG 57.480 36.000 7.00 0.00 0.00 4.18
133 134 7.317390 TGTAGATGCAACTATTTTACACTCGA 58.683 34.615 7.00 0.00 0.00 4.04
152 153 0.321653 AACATCGAAGGGTGGAGCAC 60.322 55.000 0.00 0.00 0.00 4.40
167 168 4.636206 GTGGAGCACTGACTATTTTTAGGG 59.364 45.833 0.00 0.00 0.00 3.53
171 172 4.222145 AGCACTGACTATTTTTAGGGACGA 59.778 41.667 0.00 0.00 0.00 4.20
172 173 4.329256 GCACTGACTATTTTTAGGGACGAC 59.671 45.833 0.00 0.00 0.00 4.34
173 174 4.561606 CACTGACTATTTTTAGGGACGACG 59.438 45.833 0.00 0.00 0.00 5.12
190 192 2.733552 CGACGAGCATGGGATTTATCAG 59.266 50.000 0.00 0.00 0.00 2.90
200 202 3.245586 TGGGATTTATCAGGTGCTTTGGT 60.246 43.478 0.00 0.00 0.00 3.67
202 204 3.131046 GGATTTATCAGGTGCTTTGGTGG 59.869 47.826 0.00 0.00 0.00 4.61
222 224 5.016831 GTGGTGGTCTATGAGGGAATTTTT 58.983 41.667 0.00 0.00 0.00 1.94
234 236 4.156477 AGGGAATTTTTGATCCGGTTTCA 58.844 39.130 0.00 3.23 36.54 2.69
239 241 7.320399 GGAATTTTTGATCCGGTTTCAGTAAT 58.680 34.615 0.00 7.07 0.00 1.89
267 269 1.369091 GCCTGCGGTGAAGTGGTATG 61.369 60.000 0.00 0.00 0.00 2.39
297 302 7.022055 TGAATGTTGTTCACTTGAATTACGT 57.978 32.000 0.00 0.00 36.33 3.57
325 330 9.912634 CAAGTTGTTATGGATTGTTTGATAGTT 57.087 29.630 0.00 0.00 0.00 2.24
350 355 8.322906 TGTAAATGATATTAATTCAGGCTCCG 57.677 34.615 0.00 0.00 0.00 4.63
357 362 7.397476 TGATATTAATTCAGGCTCCGTCTATCT 59.603 37.037 0.00 0.00 0.00 1.98
362 367 0.259065 AGGCTCCGTCTATCTGGTGA 59.741 55.000 0.00 0.00 0.00 4.02
399 404 1.409427 GCGGTGTAGAAGAGCCACTAT 59.591 52.381 0.00 0.00 0.00 2.12
406 411 1.558756 AGAAGAGCCACTATGCAAGCT 59.441 47.619 0.00 0.00 38.56 3.74
408 413 2.035530 AGAGCCACTATGCAAGCTTC 57.964 50.000 0.00 0.00 35.23 3.86
439 444 5.420104 GGACATGGAGGATGAGAAACAAATT 59.580 40.000 0.00 0.00 35.80 1.82
441 446 6.928520 ACATGGAGGATGAGAAACAAATTTC 58.071 36.000 0.00 0.00 38.93 2.17
455 460 8.631940 GAAACAAATTTCGAAGAGGCACTCGT 62.632 42.308 0.00 0.00 46.79 4.18
466 471 3.194005 AGGCACTCGTGAAAGAAAAGA 57.806 42.857 0.39 0.00 0.00 2.52
468 473 3.561725 AGGCACTCGTGAAAGAAAAGAAG 59.438 43.478 0.39 0.00 0.00 2.85
471 476 5.201181 GCACTCGTGAAAGAAAAGAAGAAG 58.799 41.667 0.39 0.00 0.00 2.85
475 480 7.962918 CACTCGTGAAAGAAAAGAAGAAGAAAA 59.037 33.333 0.00 0.00 0.00 2.29
476 481 7.963465 ACTCGTGAAAGAAAAGAAGAAGAAAAC 59.037 33.333 0.00 0.00 0.00 2.43
480 485 8.576281 GTGAAAGAAAAGAAGAAGAAAACGAAC 58.424 33.333 0.00 0.00 0.00 3.95
491 496 4.935885 AGAAAACGAACATCATGCTCTC 57.064 40.909 0.00 0.00 0.00 3.20
492 497 3.369147 AGAAAACGAACATCATGCTCTCG 59.631 43.478 0.00 3.48 35.68 4.04
514 519 4.500265 GGCAACTTCAGGCCTCAA 57.500 55.556 0.00 0.00 46.74 3.02
515 520 2.261215 GGCAACTTCAGGCCTCAAG 58.739 57.895 15.84 15.84 46.74 3.02
516 521 1.246737 GGCAACTTCAGGCCTCAAGG 61.247 60.000 21.54 4.75 46.74 3.61
528 533 2.620251 CCTCAAGGCGGAACATCATA 57.380 50.000 0.00 0.00 0.00 2.15
529 534 3.131709 CCTCAAGGCGGAACATCATAT 57.868 47.619 0.00 0.00 0.00 1.78
530 535 2.810274 CCTCAAGGCGGAACATCATATG 59.190 50.000 0.00 0.00 0.00 1.78
532 537 3.205338 TCAAGGCGGAACATCATATGTG 58.795 45.455 1.90 3.41 44.07 3.21
533 538 2.260844 AGGCGGAACATCATATGTGG 57.739 50.000 1.90 0.00 44.07 4.17
534 539 1.490490 AGGCGGAACATCATATGTGGT 59.510 47.619 1.90 0.00 44.07 4.16
640 681 6.243216 TCAGGTTAAACAAACTGGAGTACT 57.757 37.500 0.00 0.00 38.23 2.73
642 683 7.794041 TCAGGTTAAACAAACTGGAGTACTAA 58.206 34.615 0.00 0.00 38.23 2.24
643 684 8.434392 TCAGGTTAAACAAACTGGAGTACTAAT 58.566 33.333 0.00 0.00 38.23 1.73
644 685 9.715121 CAGGTTAAACAAACTGGAGTACTAATA 57.285 33.333 0.00 0.00 38.23 0.98
645 686 9.716531 AGGTTAAACAAACTGGAGTACTAATAC 57.283 33.333 0.00 0.00 38.23 1.89
646 687 9.492973 GGTTAAACAAACTGGAGTACTAATACA 57.507 33.333 0.00 0.00 38.23 2.29
667 708 5.961272 ACACAAGAAAACTTGATTTCCGTT 58.039 33.333 15.32 0.00 39.59 4.44
668 709 6.033966 ACACAAGAAAACTTGATTTCCGTTC 58.966 36.000 15.32 0.00 39.59 3.95
694 735 1.256812 AAACCCTTGATTTCCCTGCG 58.743 50.000 0.00 0.00 0.00 5.18
706 747 1.234821 TCCCTGCGTCAATGTGTTTC 58.765 50.000 0.00 0.00 0.00 2.78
778 822 0.693092 AGTACAGTGGTGGTGGTGGT 60.693 55.000 0.00 0.00 0.00 4.16
851 904 0.698238 TGTAGCCATGGTGGAGCTTT 59.302 50.000 14.67 0.00 40.96 3.51
884 937 1.433592 ACCACACTCTCCCTAGTTCCT 59.566 52.381 0.00 0.00 0.00 3.36
973 1029 0.730834 CGCACTGAGACGGTGAGAAG 60.731 60.000 13.83 0.00 41.79 2.85
974 1030 1.011451 GCACTGAGACGGTGAGAAGC 61.011 60.000 13.83 0.00 42.79 3.86
975 1031 0.315251 CACTGAGACGGTGAGAAGCA 59.685 55.000 4.92 0.00 42.79 3.91
976 1032 0.600557 ACTGAGACGGTGAGAAGCAG 59.399 55.000 0.00 0.00 0.00 4.24
977 1033 0.884514 CTGAGACGGTGAGAAGCAGA 59.115 55.000 0.00 0.00 0.00 4.26
978 1034 0.884514 TGAGACGGTGAGAAGCAGAG 59.115 55.000 0.00 0.00 0.00 3.35
980 1036 1.446966 GACGGTGAGAAGCAGAGGC 60.447 63.158 0.00 0.00 41.61 4.70
981 1037 2.159819 GACGGTGAGAAGCAGAGGCA 62.160 60.000 0.00 0.00 44.61 4.75
982 1038 1.447489 CGGTGAGAAGCAGAGGCAG 60.447 63.158 0.00 0.00 44.61 4.85
984 1040 0.390998 GGTGAGAAGCAGAGGCAGAC 60.391 60.000 0.00 0.00 44.61 3.51
987 1043 1.882989 GAGAAGCAGAGGCAGACGGT 61.883 60.000 0.00 0.00 44.61 4.83
1068 1143 1.376683 GTACCAGTCGCCAATGCCA 60.377 57.895 0.00 0.00 0.00 4.92
1869 1944 4.129737 TCCTTCGGCTTCGAGCGG 62.130 66.667 7.70 7.70 43.62 5.52
1875 1950 2.100631 CGGCTTCGAGCGGAACATT 61.101 57.895 8.13 0.00 43.27 2.71
1998 2073 1.528824 CTGGCCATCTCCATTCGGT 59.471 57.895 5.51 0.00 35.22 4.69
2148 2223 4.146156 TCCGAGCCCCCGTCCATA 62.146 66.667 0.00 0.00 0.00 2.74
2537 2620 0.391661 CCAAGTCGGTGACCATCTGG 60.392 60.000 1.11 0.00 42.17 3.86
2571 2666 2.079020 AAACGAACGGCTCTCGGTGA 62.079 55.000 9.44 0.00 39.92 4.02
2572 2667 2.504244 CGAACGGCTCTCGGTGAC 60.504 66.667 0.00 0.00 39.92 3.67
2625 2720 1.372087 CGGACAGCTCAAATGGAGGC 61.372 60.000 0.00 0.00 44.22 4.70
2626 2721 0.322816 GGACAGCTCAAATGGAGGCA 60.323 55.000 0.00 0.00 44.22 4.75
2628 2723 1.200948 GACAGCTCAAATGGAGGCAAC 59.799 52.381 0.00 0.00 44.22 4.17
2629 2724 1.250328 CAGCTCAAATGGAGGCAACA 58.750 50.000 0.00 0.00 44.22 3.33
2631 2726 2.036217 CAGCTCAAATGGAGGCAACAAA 59.964 45.455 0.00 0.00 44.22 2.83
2647 2743 0.667184 CAAAGGAACCGTTGCCATGC 60.667 55.000 6.58 0.00 0.00 4.06
2715 2811 5.650266 TGTTTGAGTTTAAGAGAAGTTGCCA 59.350 36.000 0.00 0.00 0.00 4.92
2762 2858 8.578308 TTTGTTCACAAATATCTGCAAGAAAG 57.422 30.769 0.79 0.00 43.16 2.62
2763 2859 7.939782 TTGTTCACAAATATCTGCAAGAAAGA 58.060 30.769 0.00 0.00 38.80 2.52
2764 2860 8.412456 TTGTTCACAAATATCTGCAAGAAAGAA 58.588 29.630 0.00 0.00 38.80 2.52
2774 2870 6.422776 TCTGCAAGAAAGAAAATATCCGTC 57.577 37.500 0.00 0.00 42.31 4.79
2775 2871 6.173339 TCTGCAAGAAAGAAAATATCCGTCT 58.827 36.000 0.00 0.00 42.31 4.18
2776 2872 6.655003 TCTGCAAGAAAGAAAATATCCGTCTT 59.345 34.615 0.00 0.00 42.31 3.01
2777 2873 6.611381 TGCAAGAAAGAAAATATCCGTCTTG 58.389 36.000 6.21 6.21 44.58 3.02
2778 2874 6.030228 GCAAGAAAGAAAATATCCGTCTTGG 58.970 40.000 11.29 0.00 43.32 3.61
2779 2875 6.349363 GCAAGAAAGAAAATATCCGTCTTGGT 60.349 38.462 11.29 0.00 43.32 3.67
2780 2876 7.593825 CAAGAAAGAAAATATCCGTCTTGGTT 58.406 34.615 0.00 0.00 41.43 3.67
2781 2877 7.145932 AGAAAGAAAATATCCGTCTTGGTTG 57.854 36.000 0.00 0.00 39.52 3.77
2782 2878 6.940298 AGAAAGAAAATATCCGTCTTGGTTGA 59.060 34.615 0.00 0.00 39.52 3.18
2783 2879 6.496338 AAGAAAATATCCGTCTTGGTTGAC 57.504 37.500 0.00 0.00 39.52 3.18
2784 2880 4.941873 AGAAAATATCCGTCTTGGTTGACC 59.058 41.667 0.00 0.00 39.52 4.02
2785 2881 2.596904 ATATCCGTCTTGGTTGACCG 57.403 50.000 0.00 0.00 39.43 4.79
2786 2882 1.548081 TATCCGTCTTGGTTGACCGA 58.452 50.000 0.00 0.00 39.43 4.69
2787 2883 0.682852 ATCCGTCTTGGTTGACCGAA 59.317 50.000 0.00 0.00 39.43 4.30
2788 2884 0.249573 TCCGTCTTGGTTGACCGAAC 60.250 55.000 0.00 0.00 39.43 3.95
2789 2885 0.249741 CCGTCTTGGTTGACCGAACT 60.250 55.000 0.00 0.00 39.43 3.01
2790 2886 1.000060 CCGTCTTGGTTGACCGAACTA 60.000 52.381 0.00 0.00 39.43 2.24
2791 2887 2.353406 CCGTCTTGGTTGACCGAACTAT 60.353 50.000 0.00 0.00 39.43 2.12
2792 2888 3.119388 CCGTCTTGGTTGACCGAACTATA 60.119 47.826 0.00 0.00 39.43 1.31
2793 2889 4.441079 CCGTCTTGGTTGACCGAACTATAT 60.441 45.833 0.00 0.00 39.43 0.86
2794 2890 4.738740 CGTCTTGGTTGACCGAACTATATC 59.261 45.833 0.00 0.00 39.43 1.63
2795 2891 5.450137 CGTCTTGGTTGACCGAACTATATCT 60.450 44.000 0.00 0.00 39.43 1.98
2796 2892 6.238566 CGTCTTGGTTGACCGAACTATATCTA 60.239 42.308 0.00 0.00 39.43 1.98
2797 2893 6.916932 GTCTTGGTTGACCGAACTATATCTAC 59.083 42.308 0.00 0.00 39.43 2.59
2798 2894 6.604396 TCTTGGTTGACCGAACTATATCTACA 59.396 38.462 0.00 0.00 39.43 2.74
2799 2895 6.971726 TGGTTGACCGAACTATATCTACAT 57.028 37.500 0.00 0.00 39.43 2.29
2800 2896 6.978338 TGGTTGACCGAACTATATCTACATC 58.022 40.000 0.00 0.00 39.43 3.06
2801 2897 6.015688 TGGTTGACCGAACTATATCTACATCC 60.016 42.308 0.00 0.00 39.43 3.51
2802 2898 5.874895 TGACCGAACTATATCTACATCCG 57.125 43.478 0.00 0.00 0.00 4.18
2803 2899 5.554070 TGACCGAACTATATCTACATCCGA 58.446 41.667 0.00 0.00 0.00 4.55
2804 2900 5.999600 TGACCGAACTATATCTACATCCGAA 59.000 40.000 0.00 0.00 0.00 4.30
2805 2901 6.487668 TGACCGAACTATATCTACATCCGAAA 59.512 38.462 0.00 0.00 0.00 3.46
2806 2902 7.013559 TGACCGAACTATATCTACATCCGAAAA 59.986 37.037 0.00 0.00 0.00 2.29
2807 2903 7.893658 ACCGAACTATATCTACATCCGAAAAT 58.106 34.615 0.00 0.00 0.00 1.82
2808 2904 8.027771 ACCGAACTATATCTACATCCGAAAATC 58.972 37.037 0.00 0.00 0.00 2.17
2809 2905 7.488471 CCGAACTATATCTACATCCGAAAATCC 59.512 40.741 0.00 0.00 0.00 3.01
2810 2906 7.488471 CGAACTATATCTACATCCGAAAATCCC 59.512 40.741 0.00 0.00 0.00 3.85
2811 2907 8.437274 AACTATATCTACATCCGAAAATCCCT 57.563 34.615 0.00 0.00 0.00 4.20
2812 2908 8.437274 ACTATATCTACATCCGAAAATCCCTT 57.563 34.615 0.00 0.00 0.00 3.95
2813 2909 8.881262 ACTATATCTACATCCGAAAATCCCTTT 58.119 33.333 0.00 0.00 0.00 3.11
2814 2910 9.726438 CTATATCTACATCCGAAAATCCCTTTT 57.274 33.333 0.00 0.00 37.28 2.27
2815 2911 6.699575 ATCTACATCCGAAAATCCCTTTTG 57.300 37.500 0.00 0.00 34.73 2.44
2816 2912 4.947388 TCTACATCCGAAAATCCCTTTTGG 59.053 41.667 0.00 0.00 46.59 3.28
2825 2921 1.677552 TCCCTTTTGGAGGTCGAGC 59.322 57.895 6.48 6.48 44.71 5.03
2826 2922 1.741770 CCCTTTTGGAGGTCGAGCG 60.742 63.158 9.28 0.00 44.71 5.03
2827 2923 2.391389 CCTTTTGGAGGTCGAGCGC 61.391 63.158 10.06 10.06 44.07 5.92
2828 2924 1.374758 CTTTTGGAGGTCGAGCGCT 60.375 57.895 11.27 11.27 0.00 5.92
2829 2925 0.108804 CTTTTGGAGGTCGAGCGCTA 60.109 55.000 11.50 9.43 0.00 4.26
2830 2926 0.535335 TTTTGGAGGTCGAGCGCTAT 59.465 50.000 11.50 0.00 0.00 2.97
2831 2927 0.179111 TTTGGAGGTCGAGCGCTATG 60.179 55.000 11.50 6.30 0.00 2.23
2832 2928 2.016393 TTGGAGGTCGAGCGCTATGG 62.016 60.000 11.50 2.45 0.00 2.74
2833 2929 2.194212 GGAGGTCGAGCGCTATGGA 61.194 63.158 11.50 5.39 0.00 3.41
2834 2930 1.284408 GAGGTCGAGCGCTATGGAG 59.716 63.158 11.50 0.00 0.00 3.86
2835 2931 1.152943 AGGTCGAGCGCTATGGAGA 60.153 57.895 11.50 2.01 0.00 3.71
2836 2932 1.008309 GGTCGAGCGCTATGGAGAC 60.008 63.158 11.50 14.69 0.00 3.36
2837 2933 1.008309 GTCGAGCGCTATGGAGACC 60.008 63.158 11.50 0.00 0.00 3.85
2838 2934 2.050895 CGAGCGCTATGGAGACCG 60.051 66.667 11.50 2.48 0.00 4.79
2839 2935 2.336809 GAGCGCTATGGAGACCGG 59.663 66.667 11.50 0.00 0.00 5.28
2840 2936 2.442272 AGCGCTATGGAGACCGGT 60.442 61.111 8.99 6.92 0.00 5.28
2841 2937 2.017559 GAGCGCTATGGAGACCGGTT 62.018 60.000 11.50 0.00 0.00 4.44
2842 2938 1.153429 GCGCTATGGAGACCGGTTT 60.153 57.895 9.42 1.19 0.00 3.27
2843 2939 0.743345 GCGCTATGGAGACCGGTTTT 60.743 55.000 9.42 0.00 0.00 2.43
2844 2940 1.287425 CGCTATGGAGACCGGTTTTC 58.713 55.000 9.42 10.21 0.00 2.29
2845 2941 1.287425 GCTATGGAGACCGGTTTTCG 58.713 55.000 9.42 0.00 38.88 3.46
2846 2942 1.134907 GCTATGGAGACCGGTTTTCGA 60.135 52.381 9.42 7.94 42.43 3.71
2847 2943 2.675889 GCTATGGAGACCGGTTTTCGAA 60.676 50.000 9.42 0.00 42.43 3.71
2848 2944 2.554370 ATGGAGACCGGTTTTCGAAA 57.446 45.000 9.42 6.47 42.43 3.46
2849 2945 2.328819 TGGAGACCGGTTTTCGAAAA 57.671 45.000 19.08 19.08 42.43 2.29
2850 2946 2.215196 TGGAGACCGGTTTTCGAAAAG 58.785 47.619 23.08 14.15 42.43 2.27
2851 2947 2.216046 GGAGACCGGTTTTCGAAAAGT 58.784 47.619 23.08 17.15 42.43 2.66
2852 2948 2.615447 GGAGACCGGTTTTCGAAAAGTT 59.385 45.455 23.08 8.08 42.43 2.66
2853 2949 3.303593 GGAGACCGGTTTTCGAAAAGTTC 60.304 47.826 23.08 15.60 42.43 3.01
2854 2950 3.272581 AGACCGGTTTTCGAAAAGTTCA 58.727 40.909 23.08 0.00 42.43 3.18
2855 2951 3.690628 AGACCGGTTTTCGAAAAGTTCAA 59.309 39.130 23.08 0.00 42.43 2.69
2856 2952 4.156373 AGACCGGTTTTCGAAAAGTTCAAA 59.844 37.500 23.08 0.00 42.43 2.69
2857 2953 5.001237 ACCGGTTTTCGAAAAGTTCAAAT 57.999 34.783 23.08 3.59 42.43 2.32
2858 2954 5.412640 ACCGGTTTTCGAAAAGTTCAAATT 58.587 33.333 23.08 0.86 42.43 1.82
2859 2955 5.517411 ACCGGTTTTCGAAAAGTTCAAATTC 59.483 36.000 23.08 8.34 42.43 2.17
2860 2956 5.517054 CCGGTTTTCGAAAAGTTCAAATTCA 59.483 36.000 23.08 0.00 42.43 2.57
2861 2957 6.035112 CCGGTTTTCGAAAAGTTCAAATTCAA 59.965 34.615 23.08 0.00 42.43 2.69
2862 2958 7.412020 CCGGTTTTCGAAAAGTTCAAATTCAAA 60.412 33.333 23.08 0.00 42.43 2.69
2863 2959 7.630606 CGGTTTTCGAAAAGTTCAAATTCAAAG 59.369 33.333 23.08 1.56 42.43 2.77
2864 2960 8.652463 GGTTTTCGAAAAGTTCAAATTCAAAGA 58.348 29.630 23.08 0.00 0.00 2.52
2900 2996 7.578310 ATGGATATACATGAAGGCATAATGC 57.422 36.000 0.00 0.00 44.08 3.56
2921 3017 8.761575 AATGCATAAATGTGTAAGTTTTCAGG 57.238 30.769 0.00 0.00 0.00 3.86
2922 3018 7.517614 TGCATAAATGTGTAAGTTTTCAGGA 57.482 32.000 0.00 0.00 0.00 3.86
2923 3019 7.367285 TGCATAAATGTGTAAGTTTTCAGGAC 58.633 34.615 0.00 0.00 0.00 3.85
2924 3020 6.523201 GCATAAATGTGTAAGTTTTCAGGACG 59.477 38.462 0.00 0.00 0.00 4.79
2925 3021 7.572353 GCATAAATGTGTAAGTTTTCAGGACGA 60.572 37.037 0.00 0.00 0.00 4.20
2926 3022 6.687081 AAATGTGTAAGTTTTCAGGACGAA 57.313 33.333 0.00 0.00 0.00 3.85
2927 3023 6.687081 AATGTGTAAGTTTTCAGGACGAAA 57.313 33.333 0.00 0.00 41.95 3.46
2928 3024 6.877611 ATGTGTAAGTTTTCAGGACGAAAT 57.122 33.333 0.00 0.00 43.12 2.17
2929 3025 7.972832 ATGTGTAAGTTTTCAGGACGAAATA 57.027 32.000 0.00 0.00 43.12 1.40
2930 3026 7.972832 TGTGTAAGTTTTCAGGACGAAATAT 57.027 32.000 0.00 0.00 43.12 1.28
2931 3027 7.802738 TGTGTAAGTTTTCAGGACGAAATATG 58.197 34.615 0.00 0.00 43.12 1.78
2932 3028 7.442969 TGTGTAAGTTTTCAGGACGAAATATGT 59.557 33.333 0.00 0.00 43.12 2.29
2933 3029 8.287503 GTGTAAGTTTTCAGGACGAAATATGTT 58.712 33.333 0.00 0.00 43.12 2.71
2934 3030 8.286800 TGTAAGTTTTCAGGACGAAATATGTTG 58.713 33.333 0.00 0.00 43.12 3.33
2935 3031 7.504924 AAGTTTTCAGGACGAAATATGTTGA 57.495 32.000 0.00 0.00 43.12 3.18
2936 3032 7.504924 AGTTTTCAGGACGAAATATGTTGAA 57.495 32.000 0.00 0.00 43.12 2.69
2937 3033 7.584987 AGTTTTCAGGACGAAATATGTTGAAG 58.415 34.615 0.00 0.00 43.12 3.02
2938 3034 7.228706 AGTTTTCAGGACGAAATATGTTGAAGT 59.771 33.333 0.00 0.00 43.12 3.01
2939 3035 6.480524 TTCAGGACGAAATATGTTGAAGTG 57.519 37.500 0.00 0.00 0.00 3.16
2940 3036 5.789521 TCAGGACGAAATATGTTGAAGTGA 58.210 37.500 0.00 0.00 0.00 3.41
2941 3037 5.869344 TCAGGACGAAATATGTTGAAGTGAG 59.131 40.000 0.00 0.00 0.00 3.51
2942 3038 5.063944 CAGGACGAAATATGTTGAAGTGAGG 59.936 44.000 0.00 0.00 0.00 3.86
2943 3039 4.332819 GGACGAAATATGTTGAAGTGAGGG 59.667 45.833 0.00 0.00 0.00 4.30
2944 3040 3.689649 ACGAAATATGTTGAAGTGAGGGC 59.310 43.478 0.00 0.00 0.00 5.19
2945 3041 3.941483 CGAAATATGTTGAAGTGAGGGCT 59.059 43.478 0.00 0.00 0.00 5.19
2946 3042 5.116180 CGAAATATGTTGAAGTGAGGGCTA 58.884 41.667 0.00 0.00 0.00 3.93
2947 3043 5.760253 CGAAATATGTTGAAGTGAGGGCTAT 59.240 40.000 0.00 0.00 0.00 2.97
2948 3044 6.293081 CGAAATATGTTGAAGTGAGGGCTATG 60.293 42.308 0.00 0.00 0.00 2.23
2949 3045 2.113860 TGTTGAAGTGAGGGCTATGC 57.886 50.000 0.00 0.00 0.00 3.14
2950 3046 1.350684 TGTTGAAGTGAGGGCTATGCA 59.649 47.619 0.00 0.00 0.00 3.96
2951 3047 2.224744 TGTTGAAGTGAGGGCTATGCAA 60.225 45.455 0.00 0.00 0.00 4.08
2952 3048 2.819608 GTTGAAGTGAGGGCTATGCAAA 59.180 45.455 0.00 0.00 0.00 3.68
2953 3049 3.153369 TGAAGTGAGGGCTATGCAAAA 57.847 42.857 0.00 0.00 0.00 2.44
2954 3050 3.495331 TGAAGTGAGGGCTATGCAAAAA 58.505 40.909 0.00 0.00 0.00 1.94
2955 3051 3.507233 TGAAGTGAGGGCTATGCAAAAAG 59.493 43.478 0.00 0.00 0.00 2.27
2956 3052 3.439857 AGTGAGGGCTATGCAAAAAGA 57.560 42.857 0.00 0.00 0.00 2.52
2957 3053 3.766545 AGTGAGGGCTATGCAAAAAGAA 58.233 40.909 0.00 0.00 0.00 2.52
2958 3054 4.151883 AGTGAGGGCTATGCAAAAAGAAA 58.848 39.130 0.00 0.00 0.00 2.52
2959 3055 4.588528 AGTGAGGGCTATGCAAAAAGAAAA 59.411 37.500 0.00 0.00 0.00 2.29
2960 3056 5.070313 AGTGAGGGCTATGCAAAAAGAAAAA 59.930 36.000 0.00 0.00 0.00 1.94
2961 3057 5.177511 GTGAGGGCTATGCAAAAAGAAAAAC 59.822 40.000 0.00 0.00 0.00 2.43
2962 3058 5.163364 TGAGGGCTATGCAAAAAGAAAAACA 60.163 36.000 0.00 0.00 0.00 2.83
2963 3059 5.679601 AGGGCTATGCAAAAAGAAAAACAA 58.320 33.333 0.00 0.00 0.00 2.83
2964 3060 6.118852 AGGGCTATGCAAAAAGAAAAACAAA 58.881 32.000 0.00 0.00 0.00 2.83
2965 3061 6.772233 AGGGCTATGCAAAAAGAAAAACAAAT 59.228 30.769 0.00 0.00 0.00 2.32
2966 3062 7.041167 AGGGCTATGCAAAAAGAAAAACAAATC 60.041 33.333 0.00 0.00 0.00 2.17
2967 3063 7.255070 GGGCTATGCAAAAAGAAAAACAAATCA 60.255 33.333 0.00 0.00 0.00 2.57
2968 3064 8.127954 GGCTATGCAAAAAGAAAAACAAATCAA 58.872 29.630 0.00 0.00 0.00 2.57
2969 3065 9.500864 GCTATGCAAAAAGAAAAACAAATCAAA 57.499 25.926 0.00 0.00 0.00 2.69
2972 3068 8.947304 TGCAAAAAGAAAAACAAATCAAAGAC 57.053 26.923 0.00 0.00 0.00 3.01
2973 3069 8.782144 TGCAAAAAGAAAAACAAATCAAAGACT 58.218 25.926 0.00 0.00 0.00 3.24
2974 3070 9.611284 GCAAAAAGAAAAACAAATCAAAGACTT 57.389 25.926 0.00 0.00 0.00 3.01
3005 3101 9.775854 ACAAATGATACTATTCATCTTCTCAGG 57.224 33.333 0.00 0.00 35.29 3.86
3006 3102 8.719648 CAAATGATACTATTCATCTTCTCAGGC 58.280 37.037 0.00 0.00 35.29 4.85
3007 3103 6.352016 TGATACTATTCATCTTCTCAGGCC 57.648 41.667 0.00 0.00 0.00 5.19
3008 3104 5.840693 TGATACTATTCATCTTCTCAGGCCA 59.159 40.000 5.01 0.00 0.00 5.36
3009 3105 6.499699 TGATACTATTCATCTTCTCAGGCCAT 59.500 38.462 5.01 0.00 0.00 4.40
3010 3106 4.970711 ACTATTCATCTTCTCAGGCCATG 58.029 43.478 5.01 0.00 0.00 3.66
3011 3107 4.657504 ACTATTCATCTTCTCAGGCCATGA 59.342 41.667 5.01 5.02 36.21 3.07
3012 3108 4.515028 ATTCATCTTCTCAGGCCATGAA 57.485 40.909 13.08 13.08 37.52 2.57
3013 3109 4.515028 TTCATCTTCTCAGGCCATGAAT 57.485 40.909 5.01 0.00 37.52 2.57
3014 3110 4.515028 TCATCTTCTCAGGCCATGAATT 57.485 40.909 5.01 0.00 37.52 2.17
3015 3111 4.863548 TCATCTTCTCAGGCCATGAATTT 58.136 39.130 5.01 0.00 37.52 1.82
3016 3112 4.643334 TCATCTTCTCAGGCCATGAATTTG 59.357 41.667 5.01 6.89 37.52 2.32
3017 3113 4.038271 TCTTCTCAGGCCATGAATTTGT 57.962 40.909 5.01 0.00 37.52 2.83
3018 3114 4.012374 TCTTCTCAGGCCATGAATTTGTC 58.988 43.478 5.01 0.00 37.52 3.18
3019 3115 3.726557 TCTCAGGCCATGAATTTGTCT 57.273 42.857 5.01 0.00 37.52 3.41
3020 3116 4.038271 TCTCAGGCCATGAATTTGTCTT 57.962 40.909 5.01 0.00 37.52 3.01
3021 3117 4.410099 TCTCAGGCCATGAATTTGTCTTT 58.590 39.130 5.01 0.00 37.52 2.52
3022 3118 4.834496 TCTCAGGCCATGAATTTGTCTTTT 59.166 37.500 5.01 0.00 37.52 2.27
3023 3119 5.305128 TCTCAGGCCATGAATTTGTCTTTTT 59.695 36.000 5.01 0.00 37.52 1.94
3047 3143 8.750515 TTTGATATAGATCACATTTCAAGGCA 57.249 30.769 0.00 0.00 41.92 4.75
3048 3144 8.929260 TTGATATAGATCACATTTCAAGGCAT 57.071 30.769 0.00 0.00 41.92 4.40
3049 3145 8.929260 TGATATAGATCACATTTCAAGGCATT 57.071 30.769 0.00 0.00 37.15 3.56
3050 3146 9.358406 TGATATAGATCACATTTCAAGGCATTT 57.642 29.630 0.00 0.00 37.15 2.32
3051 3147 9.837525 GATATAGATCACATTTCAAGGCATTTC 57.162 33.333 0.00 0.00 31.78 2.17
3052 3148 5.988310 AGATCACATTTCAAGGCATTTCA 57.012 34.783 0.00 0.00 0.00 2.69
3053 3149 5.962433 AGATCACATTTCAAGGCATTTCAG 58.038 37.500 0.00 0.00 0.00 3.02
3054 3150 3.916761 TCACATTTCAAGGCATTTCAGC 58.083 40.909 0.00 0.00 0.00 4.26
3069 3165 4.576216 TTTCAGCCTGAAAATTTACGCA 57.424 36.364 17.22 0.00 42.72 5.24
3070 3166 3.552604 TCAGCCTGAAAATTTACGCAC 57.447 42.857 0.00 0.00 0.00 5.34
3071 3167 2.881513 TCAGCCTGAAAATTTACGCACA 59.118 40.909 0.00 0.00 0.00 4.57
3072 3168 3.505680 TCAGCCTGAAAATTTACGCACAT 59.494 39.130 0.00 0.00 0.00 3.21
3073 3169 4.697828 TCAGCCTGAAAATTTACGCACATA 59.302 37.500 0.00 0.00 0.00 2.29
3074 3170 4.793216 CAGCCTGAAAATTTACGCACATAC 59.207 41.667 0.00 0.00 0.00 2.39
3075 3171 4.457603 AGCCTGAAAATTTACGCACATACA 59.542 37.500 0.00 0.00 0.00 2.29
3076 3172 4.557301 GCCTGAAAATTTACGCACATACAC 59.443 41.667 0.00 0.00 0.00 2.90
3077 3173 5.694816 CCTGAAAATTTACGCACATACACA 58.305 37.500 0.00 0.00 0.00 3.72
3078 3174 6.321717 CCTGAAAATTTACGCACATACACAT 58.678 36.000 0.00 0.00 0.00 3.21
3079 3175 7.468441 CCTGAAAATTTACGCACATACACATA 58.532 34.615 0.00 0.00 0.00 2.29
3080 3176 7.965655 CCTGAAAATTTACGCACATACACATAA 59.034 33.333 0.00 0.00 0.00 1.90
3081 3177 8.662369 TGAAAATTTACGCACATACACATAAC 57.338 30.769 0.00 0.00 0.00 1.89
3082 3178 8.290325 TGAAAATTTACGCACATACACATAACA 58.710 29.630 0.00 0.00 0.00 2.41
3083 3179 9.284594 GAAAATTTACGCACATACACATAACAT 57.715 29.630 0.00 0.00 0.00 2.71
3084 3180 8.835467 AAATTTACGCACATACACATAACATC 57.165 30.769 0.00 0.00 0.00 3.06
3085 3181 5.977171 TTACGCACATACACATAACATCC 57.023 39.130 0.00 0.00 0.00 3.51
3086 3182 4.137116 ACGCACATACACATAACATCCT 57.863 40.909 0.00 0.00 0.00 3.24
3087 3183 4.513442 ACGCACATACACATAACATCCTT 58.487 39.130 0.00 0.00 0.00 3.36
3088 3184 4.332543 ACGCACATACACATAACATCCTTG 59.667 41.667 0.00 0.00 0.00 3.61
3089 3185 4.260743 CGCACATACACATAACATCCTTGG 60.261 45.833 0.00 0.00 0.00 3.61
3090 3186 4.640201 GCACATACACATAACATCCTTGGT 59.360 41.667 0.00 0.00 0.00 3.67
3091 3187 5.125417 GCACATACACATAACATCCTTGGTT 59.875 40.000 0.00 0.00 0.00 3.67
3092 3188 6.317642 GCACATACACATAACATCCTTGGTTA 59.682 38.462 0.00 0.00 35.40 2.85
3093 3189 7.678690 GCACATACACATAACATCCTTGGTTAC 60.679 40.741 0.00 0.00 33.89 2.50
3094 3190 7.552687 CACATACACATAACATCCTTGGTTACT 59.447 37.037 0.00 0.00 33.89 2.24
3095 3191 8.107095 ACATACACATAACATCCTTGGTTACTT 58.893 33.333 0.00 0.00 33.89 2.24
3096 3192 6.817765 ACACATAACATCCTTGGTTACTTG 57.182 37.500 0.00 0.00 33.89 3.16
3097 3193 6.303839 ACACATAACATCCTTGGTTACTTGT 58.696 36.000 0.00 0.00 33.89 3.16
3098 3194 7.455058 ACACATAACATCCTTGGTTACTTGTA 58.545 34.615 0.00 0.00 33.89 2.41
3099 3195 8.107095 ACACATAACATCCTTGGTTACTTGTAT 58.893 33.333 0.00 0.00 33.89 2.29
3100 3196 9.607988 CACATAACATCCTTGGTTACTTGTATA 57.392 33.333 0.00 0.00 33.89 1.47
3143 3239 9.658799 TTTGATACCAAAAAGTTCAAATGTTGA 57.341 25.926 0.00 0.00 39.15 3.18
3144 3240 9.658799 TTGATACCAAAAAGTTCAAATGTTGAA 57.341 25.926 0.00 0.00 46.68 2.69
3172 3268 2.143876 AAAAATCGGTCTCCATGGGG 57.856 50.000 13.02 9.18 0.00 4.96
3173 3269 0.258774 AAAATCGGTCTCCATGGGGG 59.741 55.000 12.98 5.50 38.37 5.40
3192 3288 4.697756 CCGAGAGCCAAACCGCCA 62.698 66.667 0.00 0.00 0.00 5.69
3193 3289 2.436646 CGAGAGCCAAACCGCCAT 60.437 61.111 0.00 0.00 0.00 4.40
3194 3290 2.040544 CGAGAGCCAAACCGCCATT 61.041 57.895 0.00 0.00 0.00 3.16
3195 3291 1.803289 GAGAGCCAAACCGCCATTC 59.197 57.895 0.00 0.00 0.00 2.67
3196 3292 1.657751 GAGAGCCAAACCGCCATTCC 61.658 60.000 0.00 0.00 0.00 3.01
3197 3293 2.679996 AGCCAAACCGCCATTCCC 60.680 61.111 0.00 0.00 0.00 3.97
3198 3294 4.128388 GCCAAACCGCCATTCCCG 62.128 66.667 0.00 0.00 0.00 5.14
3199 3295 2.675075 CCAAACCGCCATTCCCGT 60.675 61.111 0.00 0.00 0.00 5.28
3200 3296 2.272447 CCAAACCGCCATTCCCGTT 61.272 57.895 0.00 0.00 0.00 4.44
3201 3297 1.663173 CAAACCGCCATTCCCGTTT 59.337 52.632 0.00 0.00 0.00 3.60
3202 3298 0.882474 CAAACCGCCATTCCCGTTTA 59.118 50.000 0.00 0.00 0.00 2.01
3203 3299 0.883153 AAACCGCCATTCCCGTTTAC 59.117 50.000 0.00 0.00 0.00 2.01
3204 3300 0.250814 AACCGCCATTCCCGTTTACA 60.251 50.000 0.00 0.00 0.00 2.41
3205 3301 0.034863 ACCGCCATTCCCGTTTACAT 60.035 50.000 0.00 0.00 0.00 2.29
3206 3302 0.661020 CCGCCATTCCCGTTTACATC 59.339 55.000 0.00 0.00 0.00 3.06
3207 3303 1.663695 CGCCATTCCCGTTTACATCT 58.336 50.000 0.00 0.00 0.00 2.90
3208 3304 1.330521 CGCCATTCCCGTTTACATCTG 59.669 52.381 0.00 0.00 0.00 2.90
3209 3305 1.065551 GCCATTCCCGTTTACATCTGC 59.934 52.381 0.00 0.00 0.00 4.26
3210 3306 2.364632 CCATTCCCGTTTACATCTGCA 58.635 47.619 0.00 0.00 0.00 4.41
3211 3307 2.951642 CCATTCCCGTTTACATCTGCAT 59.048 45.455 0.00 0.00 0.00 3.96
3212 3308 4.133820 CCATTCCCGTTTACATCTGCATA 58.866 43.478 0.00 0.00 0.00 3.14
3213 3309 4.761739 CCATTCCCGTTTACATCTGCATAT 59.238 41.667 0.00 0.00 0.00 1.78
3214 3310 5.937540 CCATTCCCGTTTACATCTGCATATA 59.062 40.000 0.00 0.00 0.00 0.86
3215 3311 6.599244 CCATTCCCGTTTACATCTGCATATAT 59.401 38.462 0.00 0.00 0.00 0.86
3216 3312 7.121168 CCATTCCCGTTTACATCTGCATATATT 59.879 37.037 0.00 0.00 0.00 1.28
3217 3313 8.514594 CATTCCCGTTTACATCTGCATATATTT 58.485 33.333 0.00 0.00 0.00 1.40
3218 3314 8.458573 TTCCCGTTTACATCTGCATATATTTT 57.541 30.769 0.00 0.00 0.00 1.82
3219 3315 7.870826 TCCCGTTTACATCTGCATATATTTTG 58.129 34.615 0.00 0.00 0.00 2.44
3220 3316 7.717436 TCCCGTTTACATCTGCATATATTTTGA 59.283 33.333 0.00 0.00 0.00 2.69
3221 3317 8.349245 CCCGTTTACATCTGCATATATTTTGAA 58.651 33.333 0.00 0.00 0.00 2.69
3222 3318 9.169468 CCGTTTACATCTGCATATATTTTGAAC 57.831 33.333 0.00 0.00 0.00 3.18
3223 3319 9.715123 CGTTTACATCTGCATATATTTTGAACA 57.285 29.630 0.00 0.00 0.00 3.18
3231 3327 8.768019 TCTGCATATATTTTGAACATTCTCTCG 58.232 33.333 0.00 0.00 0.00 4.04
3232 3328 7.864686 TGCATATATTTTGAACATTCTCTCGG 58.135 34.615 0.00 0.00 0.00 4.63
3233 3329 7.041167 TGCATATATTTTGAACATTCTCTCGGG 60.041 37.037 0.00 0.00 0.00 5.14
3234 3330 7.041098 GCATATATTTTGAACATTCTCTCGGGT 60.041 37.037 0.00 0.00 0.00 5.28
3235 3331 8.840321 CATATATTTTGAACATTCTCTCGGGTT 58.160 33.333 0.00 0.00 0.00 4.11
3236 3332 4.829064 TTTTGAACATTCTCTCGGGTTG 57.171 40.909 0.00 0.00 0.00 3.77
3237 3333 3.485463 TTGAACATTCTCTCGGGTTGT 57.515 42.857 0.00 0.00 0.00 3.32
3238 3334 3.485463 TGAACATTCTCTCGGGTTGTT 57.515 42.857 0.00 0.00 33.47 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.327924 TGCCAATCTTCGGGTCATGT 59.672 50.000 0.00 0.00 0.00 3.21
1 2 0.734889 GTGCCAATCTTCGGGTCATG 59.265 55.000 0.00 0.00 0.00 3.07
10 11 0.037326 TTCTCTCGCGTGCCAATCTT 60.037 50.000 5.77 0.00 0.00 2.40
35 36 2.409870 CCAATCCGCCTCACAAGCC 61.410 63.158 0.00 0.00 0.00 4.35
59 60 5.662674 TTCCACCTAAGAGCTCTTTCTAC 57.337 43.478 32.70 0.00 37.40 2.59
131 132 1.084370 GCTCCACCCTTCGATGTTCG 61.084 60.000 0.00 0.00 42.10 3.95
132 133 0.036388 TGCTCCACCCTTCGATGTTC 60.036 55.000 0.00 0.00 0.00 3.18
133 134 0.321653 GTGCTCCACCCTTCGATGTT 60.322 55.000 0.00 0.00 0.00 2.71
147 148 4.567159 CGTCCCTAAAAATAGTCAGTGCTC 59.433 45.833 0.00 0.00 0.00 4.26
152 153 4.990257 TCGTCGTCCCTAAAAATAGTCAG 58.010 43.478 0.00 0.00 0.00 3.51
167 168 2.218953 TAAATCCCATGCTCGTCGTC 57.781 50.000 0.00 0.00 0.00 4.20
171 172 2.439507 ACCTGATAAATCCCATGCTCGT 59.560 45.455 0.00 0.00 0.00 4.18
172 173 2.810274 CACCTGATAAATCCCATGCTCG 59.190 50.000 0.00 0.00 0.00 5.03
173 174 2.555757 GCACCTGATAAATCCCATGCTC 59.444 50.000 0.00 0.00 0.00 4.26
190 192 0.109723 TAGACCACCACCAAAGCACC 59.890 55.000 0.00 0.00 0.00 5.01
200 202 4.946160 AAAATTCCCTCATAGACCACCA 57.054 40.909 0.00 0.00 0.00 4.17
202 204 6.039829 GGATCAAAAATTCCCTCATAGACCAC 59.960 42.308 0.00 0.00 0.00 4.16
222 224 5.353394 AGCTTATTACTGAAACCGGATCA 57.647 39.130 9.46 11.70 0.00 2.92
234 236 2.289694 CCGCAGGCCATAGCTTATTACT 60.290 50.000 5.01 0.00 46.14 2.24
267 269 7.754069 TTCAAGTGAACAACATTCATTGAAC 57.246 32.000 0.15 0.00 34.72 3.18
297 302 6.154203 TCAAACAATCCATAACAACTTGCA 57.846 33.333 0.00 0.00 0.00 4.08
325 330 7.936847 ACGGAGCCTGAATTAATATCATTTACA 59.063 33.333 0.00 0.00 0.00 2.41
344 349 1.112113 TTCACCAGATAGACGGAGCC 58.888 55.000 0.00 0.00 0.00 4.70
350 355 7.607991 TCTCCTTCAAAATTTCACCAGATAGAC 59.392 37.037 0.00 0.00 0.00 2.59
357 362 4.082787 GCGATCTCCTTCAAAATTTCACCA 60.083 41.667 0.00 0.00 0.00 4.17
362 367 3.081804 ACCGCGATCTCCTTCAAAATTT 58.918 40.909 8.23 0.00 0.00 1.82
399 404 0.944311 GTCCGAACTCGAAGCTTGCA 60.944 55.000 2.10 0.00 43.02 4.08
406 411 0.530744 CCTCCATGTCCGAACTCGAA 59.469 55.000 0.00 0.00 43.02 3.71
408 413 0.747255 ATCCTCCATGTCCGAACTCG 59.253 55.000 0.00 0.00 39.44 4.18
439 444 0.671796 TTCACGAGTGCCTCTTCGAA 59.328 50.000 0.00 0.00 0.00 3.71
441 446 1.063806 CTTTCACGAGTGCCTCTTCG 58.936 55.000 0.00 0.00 0.00 3.79
446 451 3.194005 TCTTTTCTTTCACGAGTGCCT 57.806 42.857 0.00 0.00 0.00 4.75
449 454 6.589830 TCTTCTTCTTTTCTTTCACGAGTG 57.410 37.500 0.00 0.00 0.00 3.51
455 460 8.293867 TGTTCGTTTTCTTCTTCTTTTCTTTCA 58.706 29.630 0.00 0.00 0.00 2.69
466 471 5.471456 AGAGCATGATGTTCGTTTTCTTCTT 59.529 36.000 3.62 0.00 32.57 2.52
468 473 5.288543 AGAGCATGATGTTCGTTTTCTTC 57.711 39.130 3.62 0.00 32.57 2.87
471 476 3.367932 TCGAGAGCATGATGTTCGTTTTC 59.632 43.478 12.44 0.00 32.57 2.29
475 480 2.654749 TTCGAGAGCATGATGTTCGT 57.345 45.000 12.44 0.00 32.57 3.85
476 481 3.242220 CCTTTTCGAGAGCATGATGTTCG 60.242 47.826 3.62 2.14 32.57 3.95
480 485 2.011947 TGCCTTTTCGAGAGCATGATG 58.988 47.619 0.00 0.00 30.03 3.07
491 496 0.039165 GGCCTGAAGTTGCCTTTTCG 60.039 55.000 0.00 0.00 44.46 3.46
492 497 3.894257 GGCCTGAAGTTGCCTTTTC 57.106 52.632 0.00 0.00 44.46 2.29
514 519 1.490490 ACCACATATGATGTTCCGCCT 59.510 47.619 10.38 0.00 42.70 5.52
515 520 1.967319 ACCACATATGATGTTCCGCC 58.033 50.000 10.38 0.00 42.70 6.13
516 521 4.370364 AAAACCACATATGATGTTCCGC 57.630 40.909 10.38 0.00 42.70 5.54
517 522 5.065859 TGCTAAAACCACATATGATGTTCCG 59.934 40.000 10.38 5.61 42.70 4.30
518 523 6.449635 TGCTAAAACCACATATGATGTTCC 57.550 37.500 10.38 3.41 42.70 3.62
519 524 6.468956 CGTTGCTAAAACCACATATGATGTTC 59.531 38.462 10.38 1.59 42.70 3.18
520 525 6.072175 ACGTTGCTAAAACCACATATGATGTT 60.072 34.615 10.38 9.06 42.70 2.71
521 526 5.414454 ACGTTGCTAAAACCACATATGATGT 59.586 36.000 10.38 2.83 46.22 3.06
522 527 5.738693 CACGTTGCTAAAACCACATATGATG 59.261 40.000 10.38 4.12 0.00 3.07
523 528 5.414454 ACACGTTGCTAAAACCACATATGAT 59.586 36.000 10.38 0.00 0.00 2.45
524 529 4.757657 ACACGTTGCTAAAACCACATATGA 59.242 37.500 10.38 0.00 0.00 2.15
525 530 5.041951 ACACGTTGCTAAAACCACATATG 57.958 39.130 0.00 0.00 0.00 1.78
526 531 6.037830 GGATACACGTTGCTAAAACCACATAT 59.962 38.462 0.00 0.00 0.00 1.78
528 533 4.155280 GGATACACGTTGCTAAAACCACAT 59.845 41.667 0.00 0.00 0.00 3.21
529 534 3.499157 GGATACACGTTGCTAAAACCACA 59.501 43.478 0.00 0.00 0.00 4.17
530 535 3.120095 GGGATACACGTTGCTAAAACCAC 60.120 47.826 0.00 0.00 39.74 4.16
532 537 2.421073 GGGGATACACGTTGCTAAAACC 59.579 50.000 0.00 0.00 39.74 3.27
533 538 3.752412 GGGGATACACGTTGCTAAAAC 57.248 47.619 0.00 0.00 39.74 2.43
664 705 6.019075 GGAAATCAAGGGTTTTCTTTTGAACG 60.019 38.462 0.00 0.00 38.30 3.95
667 708 5.665360 AGGGAAATCAAGGGTTTTCTTTTGA 59.335 36.000 0.00 0.00 34.56 2.69
668 709 5.759763 CAGGGAAATCAAGGGTTTTCTTTTG 59.240 40.000 0.00 0.00 34.56 2.44
706 747 4.695455 ACGGAAATCACCATTGTGTTAGAG 59.305 41.667 0.00 0.00 43.26 2.43
717 758 0.109532 TTGAGGCACGGAAATCACCA 59.890 50.000 0.00 0.00 0.00 4.17
752 795 3.260884 CCACCACCACTGTACTAATGTCT 59.739 47.826 0.00 0.00 0.00 3.41
805 852 2.824936 CACTGGTTGGTGGCATGATTTA 59.175 45.455 0.00 0.00 33.95 1.40
806 853 1.619827 CACTGGTTGGTGGCATGATTT 59.380 47.619 0.00 0.00 33.95 2.17
807 854 1.259609 CACTGGTTGGTGGCATGATT 58.740 50.000 0.00 0.00 33.95 2.57
851 904 2.280797 GTGGTTGAGCCGAGTGCA 60.281 61.111 0.00 0.00 44.83 4.57
884 937 2.124942 TGCGGCGCATCATTGGTA 60.125 55.556 33.07 4.16 31.71 3.25
973 1029 2.125753 CTCACCGTCTGCCTCTGC 60.126 66.667 0.00 0.00 38.26 4.26
974 1030 0.108898 CTTCTCACCGTCTGCCTCTG 60.109 60.000 0.00 0.00 0.00 3.35
975 1031 0.251386 TCTTCTCACCGTCTGCCTCT 60.251 55.000 0.00 0.00 0.00 3.69
976 1032 0.603569 TTCTTCTCACCGTCTGCCTC 59.396 55.000 0.00 0.00 0.00 4.70
977 1033 0.318762 GTTCTTCTCACCGTCTGCCT 59.681 55.000 0.00 0.00 0.00 4.75
978 1034 1.009389 CGTTCTTCTCACCGTCTGCC 61.009 60.000 0.00 0.00 0.00 4.85
980 1036 1.009389 GGCGTTCTTCTCACCGTCTG 61.009 60.000 0.00 0.00 0.00 3.51
981 1037 1.289380 GGCGTTCTTCTCACCGTCT 59.711 57.895 0.00 0.00 0.00 4.18
982 1038 0.389948 ATGGCGTTCTTCTCACCGTC 60.390 55.000 0.00 0.00 0.00 4.79
984 1040 1.970917 GCATGGCGTTCTTCTCACCG 61.971 60.000 0.00 0.00 0.00 4.94
1731 1806 0.614979 CGGGGTGGAAGAAGAGGAGA 60.615 60.000 0.00 0.00 0.00 3.71
1803 1878 1.078143 GTTGAGCTGATCGGGGCTT 60.078 57.895 3.14 0.00 39.05 4.35
2537 2620 1.693083 CGTTTTCTGATCGGACGGCC 61.693 60.000 2.94 0.00 0.00 6.13
2571 2666 4.221422 CCGGTCCATCGCCATCGT 62.221 66.667 0.00 0.00 36.96 3.73
2572 2667 3.848347 CTCCGGTCCATCGCCATCG 62.848 68.421 0.00 0.00 0.00 3.84
2573 2668 2.029666 CTCCGGTCCATCGCCATC 59.970 66.667 0.00 0.00 0.00 3.51
2574 2669 4.241555 GCTCCGGTCCATCGCCAT 62.242 66.667 0.00 0.00 0.00 4.40
2577 2672 4.814294 AACGCTCCGGTCCATCGC 62.814 66.667 0.00 0.00 0.00 4.58
2578 2673 2.582498 GAACGCTCCGGTCCATCG 60.582 66.667 0.00 1.62 37.65 3.84
2579 2674 2.582498 CGAACGCTCCGGTCCATC 60.582 66.667 0.00 0.00 40.86 3.51
2580 2675 2.444700 AAACGAACGCTCCGGTCCAT 62.445 55.000 0.00 0.00 40.86 3.41
2581 2676 2.647680 AAAACGAACGCTCCGGTCCA 62.648 55.000 0.00 0.00 40.86 4.02
2582 2677 1.894223 GAAAACGAACGCTCCGGTCC 61.894 60.000 0.00 0.00 40.86 4.46
2583 2678 0.942884 AGAAAACGAACGCTCCGGTC 60.943 55.000 0.00 0.00 40.50 4.79
2625 2720 0.457851 TGGCAACGGTTCCTTTGTTG 59.542 50.000 9.25 6.78 44.38 3.33
2626 2721 1.068434 CATGGCAACGGTTCCTTTGTT 59.932 47.619 9.25 0.00 42.51 2.83
2628 2723 0.667184 GCATGGCAACGGTTCCTTTG 60.667 55.000 0.00 4.08 42.51 2.77
2629 2724 1.665442 GCATGGCAACGGTTCCTTT 59.335 52.632 0.00 0.00 42.51 3.11
2631 2726 3.055719 CGCATGGCAACGGTTCCT 61.056 61.111 5.47 0.00 42.51 3.36
2647 2743 6.679843 AGTTTTCTACCAGTAGAGAAGAACG 58.320 40.000 10.20 0.00 42.50 3.95
2752 2848 6.428385 AGACGGATATTTTCTTTCTTGCAG 57.572 37.500 0.00 0.00 0.00 4.41
2755 2851 7.145932 ACCAAGACGGATATTTTCTTTCTTG 57.854 36.000 0.00 0.00 39.91 3.02
2756 2852 7.447238 TCAACCAAGACGGATATTTTCTTTCTT 59.553 33.333 0.00 0.00 38.63 2.52
2758 2854 7.021790 GTCAACCAAGACGGATATTTTCTTTC 58.978 38.462 0.00 0.00 38.63 2.62
2759 2855 6.072119 GGTCAACCAAGACGGATATTTTCTTT 60.072 38.462 0.00 0.00 39.42 2.52
2760 2856 5.414765 GGTCAACCAAGACGGATATTTTCTT 59.585 40.000 0.00 0.00 39.42 2.52
2761 2857 4.941873 GGTCAACCAAGACGGATATTTTCT 59.058 41.667 0.00 0.00 39.42 2.52
2762 2858 4.201783 CGGTCAACCAAGACGGATATTTTC 60.202 45.833 0.00 0.00 40.17 2.29
2763 2859 3.687698 CGGTCAACCAAGACGGATATTTT 59.312 43.478 0.00 0.00 40.17 1.82
2764 2860 3.055675 TCGGTCAACCAAGACGGATATTT 60.056 43.478 0.00 0.00 41.19 1.40
2765 2861 2.498481 TCGGTCAACCAAGACGGATATT 59.502 45.455 0.00 0.00 41.19 1.28
2766 2862 2.104967 TCGGTCAACCAAGACGGATAT 58.895 47.619 0.00 0.00 41.19 1.63
2767 2863 1.548081 TCGGTCAACCAAGACGGATA 58.452 50.000 0.00 0.00 41.19 2.59
2768 2864 0.682852 TTCGGTCAACCAAGACGGAT 59.317 50.000 0.00 0.00 44.08 4.18
2769 2865 0.249573 GTTCGGTCAACCAAGACGGA 60.250 55.000 0.00 0.00 43.35 4.69
2770 2866 0.249741 AGTTCGGTCAACCAAGACGG 60.250 55.000 0.00 0.00 39.42 4.79
2771 2867 2.427232 TAGTTCGGTCAACCAAGACG 57.573 50.000 0.00 0.00 39.42 4.18
2772 2868 5.903810 AGATATAGTTCGGTCAACCAAGAC 58.096 41.667 0.00 0.00 35.28 3.01
2773 2869 6.604396 TGTAGATATAGTTCGGTCAACCAAGA 59.396 38.462 0.00 0.00 35.28 3.02
2774 2870 6.802608 TGTAGATATAGTTCGGTCAACCAAG 58.197 40.000 0.00 0.00 35.28 3.61
2775 2871 6.778834 TGTAGATATAGTTCGGTCAACCAA 57.221 37.500 0.00 0.00 35.28 3.67
2776 2872 6.015688 GGATGTAGATATAGTTCGGTCAACCA 60.016 42.308 0.00 0.00 35.28 3.67
2777 2873 6.388278 GGATGTAGATATAGTTCGGTCAACC 58.612 44.000 0.00 0.00 35.28 3.77
2778 2874 6.072838 TCGGATGTAGATATAGTTCGGTCAAC 60.073 42.308 0.00 0.00 34.86 3.18
2779 2875 5.999600 TCGGATGTAGATATAGTTCGGTCAA 59.000 40.000 0.00 0.00 0.00 3.18
2780 2876 5.554070 TCGGATGTAGATATAGTTCGGTCA 58.446 41.667 0.00 0.00 0.00 4.02
2781 2877 6.492007 TTCGGATGTAGATATAGTTCGGTC 57.508 41.667 0.00 0.00 0.00 4.79
2782 2878 6.889301 TTTCGGATGTAGATATAGTTCGGT 57.111 37.500 0.00 0.00 0.00 4.69
2783 2879 7.488471 GGATTTTCGGATGTAGATATAGTTCGG 59.512 40.741 0.00 0.00 0.00 4.30
2784 2880 7.488471 GGGATTTTCGGATGTAGATATAGTTCG 59.512 40.741 0.00 0.00 0.00 3.95
2785 2881 8.532819 AGGGATTTTCGGATGTAGATATAGTTC 58.467 37.037 0.00 0.00 0.00 3.01
2786 2882 8.437274 AGGGATTTTCGGATGTAGATATAGTT 57.563 34.615 0.00 0.00 0.00 2.24
2787 2883 8.437274 AAGGGATTTTCGGATGTAGATATAGT 57.563 34.615 0.00 0.00 0.00 2.12
2788 2884 9.726438 AAAAGGGATTTTCGGATGTAGATATAG 57.274 33.333 0.00 0.00 0.00 1.31
2789 2885 9.502091 CAAAAGGGATTTTCGGATGTAGATATA 57.498 33.333 0.00 0.00 0.00 0.86
2790 2886 7.448469 CCAAAAGGGATTTTCGGATGTAGATAT 59.552 37.037 0.00 0.00 40.01 1.63
2791 2887 6.770785 CCAAAAGGGATTTTCGGATGTAGATA 59.229 38.462 0.00 0.00 40.01 1.98
2792 2888 5.594317 CCAAAAGGGATTTTCGGATGTAGAT 59.406 40.000 0.00 0.00 40.01 1.98
2793 2889 4.947388 CCAAAAGGGATTTTCGGATGTAGA 59.053 41.667 0.00 0.00 40.01 2.59
2794 2890 4.947388 TCCAAAAGGGATTTTCGGATGTAG 59.053 41.667 0.00 0.00 42.15 2.74
2795 2891 4.924625 TCCAAAAGGGATTTTCGGATGTA 58.075 39.130 0.00 0.00 42.15 2.29
2796 2892 3.773560 TCCAAAAGGGATTTTCGGATGT 58.226 40.909 0.00 0.00 42.15 3.06
2810 2906 0.108804 TAGCGCTCGACCTCCAAAAG 60.109 55.000 16.34 0.00 0.00 2.27
2811 2907 0.535335 ATAGCGCTCGACCTCCAAAA 59.465 50.000 16.34 0.00 0.00 2.44
2812 2908 0.179111 CATAGCGCTCGACCTCCAAA 60.179 55.000 16.34 0.00 0.00 3.28
2813 2909 1.437573 CATAGCGCTCGACCTCCAA 59.562 57.895 16.34 0.00 0.00 3.53
2814 2910 2.490148 CCATAGCGCTCGACCTCCA 61.490 63.158 16.34 0.00 0.00 3.86
2815 2911 2.136196 CTCCATAGCGCTCGACCTCC 62.136 65.000 16.34 0.00 0.00 4.30
2816 2912 1.167155 TCTCCATAGCGCTCGACCTC 61.167 60.000 16.34 0.00 0.00 3.85
2817 2913 1.152943 TCTCCATAGCGCTCGACCT 60.153 57.895 16.34 0.00 0.00 3.85
2818 2914 1.008309 GTCTCCATAGCGCTCGACC 60.008 63.158 16.34 0.00 0.00 4.79
2819 2915 1.008309 GGTCTCCATAGCGCTCGAC 60.008 63.158 16.34 13.65 0.00 4.20
2820 2916 2.543802 CGGTCTCCATAGCGCTCGA 61.544 63.158 16.34 7.46 33.19 4.04
2821 2917 2.050895 CGGTCTCCATAGCGCTCG 60.051 66.667 16.34 6.46 33.19 5.03
2822 2918 2.017559 AACCGGTCTCCATAGCGCTC 62.018 60.000 16.34 0.00 38.97 5.03
2823 2919 1.614241 AAACCGGTCTCCATAGCGCT 61.614 55.000 17.26 17.26 38.97 5.92
2824 2920 0.743345 AAAACCGGTCTCCATAGCGC 60.743 55.000 8.04 0.00 38.97 5.92
2825 2921 1.287425 GAAAACCGGTCTCCATAGCG 58.713 55.000 8.04 0.00 39.95 4.26
2826 2922 1.134907 TCGAAAACCGGTCTCCATAGC 60.135 52.381 8.04 0.00 39.14 2.97
2827 2923 2.953466 TCGAAAACCGGTCTCCATAG 57.047 50.000 8.04 0.00 39.14 2.23
2828 2924 3.681593 TTTCGAAAACCGGTCTCCATA 57.318 42.857 8.04 0.00 39.14 2.74
2829 2925 2.554370 TTTCGAAAACCGGTCTCCAT 57.446 45.000 8.04 0.00 39.14 3.41
2830 2926 2.215196 CTTTTCGAAAACCGGTCTCCA 58.785 47.619 19.08 0.00 39.14 3.86
2831 2927 2.216046 ACTTTTCGAAAACCGGTCTCC 58.784 47.619 19.08 0.00 39.14 3.71
2832 2928 3.310501 TGAACTTTTCGAAAACCGGTCTC 59.689 43.478 19.08 7.11 39.14 3.36
2833 2929 3.272581 TGAACTTTTCGAAAACCGGTCT 58.727 40.909 19.08 0.00 39.14 3.85
2834 2930 3.678915 TGAACTTTTCGAAAACCGGTC 57.321 42.857 19.08 17.77 39.14 4.79
2835 2931 4.437772 TTTGAACTTTTCGAAAACCGGT 57.562 36.364 19.08 12.91 39.14 5.28
2836 2932 5.517054 TGAATTTGAACTTTTCGAAAACCGG 59.483 36.000 19.08 12.29 36.68 5.28
2837 2933 6.561945 TGAATTTGAACTTTTCGAAAACCG 57.438 33.333 19.08 12.97 36.68 4.44
2838 2934 8.652463 TCTTTGAATTTGAACTTTTCGAAAACC 58.348 29.630 19.08 11.52 36.68 3.27
2874 2970 8.472413 GCATTATGCCTTCATGTATATCCATTT 58.528 33.333 5.80 0.00 37.42 2.32
2875 2971 7.616542 TGCATTATGCCTTCATGTATATCCATT 59.383 33.333 15.06 0.00 44.23 3.16
2876 2972 7.120716 TGCATTATGCCTTCATGTATATCCAT 58.879 34.615 15.06 0.00 44.23 3.41
2877 2973 6.483405 TGCATTATGCCTTCATGTATATCCA 58.517 36.000 15.06 0.00 44.23 3.41
2878 2974 7.578310 ATGCATTATGCCTTCATGTATATCC 57.422 36.000 15.06 0.00 44.23 2.59
2882 2978 8.809066 ACATTTATGCATTATGCCTTCATGTAT 58.191 29.630 15.06 1.40 44.23 2.29
2883 2979 8.083462 CACATTTATGCATTATGCCTTCATGTA 58.917 33.333 15.06 0.00 44.23 2.29
2884 2980 6.926826 CACATTTATGCATTATGCCTTCATGT 59.073 34.615 15.06 13.83 44.23 3.21
2885 2981 6.926826 ACACATTTATGCATTATGCCTTCATG 59.073 34.615 15.06 13.26 44.23 3.07
2886 2982 7.058023 ACACATTTATGCATTATGCCTTCAT 57.942 32.000 15.06 3.94 44.23 2.57
2887 2983 6.468333 ACACATTTATGCATTATGCCTTCA 57.532 33.333 15.06 0.00 44.23 3.02
2888 2984 8.137437 ACTTACACATTTATGCATTATGCCTTC 58.863 33.333 15.06 0.00 44.23 3.46
2889 2985 8.010733 ACTTACACATTTATGCATTATGCCTT 57.989 30.769 15.06 4.92 44.23 4.35
2890 2986 7.587037 ACTTACACATTTATGCATTATGCCT 57.413 32.000 15.06 7.49 44.23 4.75
2891 2987 8.647143 AAACTTACACATTTATGCATTATGCC 57.353 30.769 15.06 0.00 44.23 4.40
2895 2991 9.853555 CCTGAAAACTTACACATTTATGCATTA 57.146 29.630 3.54 0.00 0.00 1.90
2896 2992 8.584157 TCCTGAAAACTTACACATTTATGCATT 58.416 29.630 3.54 0.00 0.00 3.56
2897 2993 8.028938 GTCCTGAAAACTTACACATTTATGCAT 58.971 33.333 3.79 3.79 0.00 3.96
2898 2994 7.367285 GTCCTGAAAACTTACACATTTATGCA 58.633 34.615 0.00 0.00 0.00 3.96
2899 2995 6.523201 CGTCCTGAAAACTTACACATTTATGC 59.477 38.462 0.00 0.00 0.00 3.14
2900 2996 7.802738 TCGTCCTGAAAACTTACACATTTATG 58.197 34.615 0.00 0.00 0.00 1.90
2901 2997 7.972832 TCGTCCTGAAAACTTACACATTTAT 57.027 32.000 0.00 0.00 0.00 1.40
2902 2998 7.789273 TTCGTCCTGAAAACTTACACATTTA 57.211 32.000 0.00 0.00 32.37 1.40
2903 2999 6.687081 TTCGTCCTGAAAACTTACACATTT 57.313 33.333 0.00 0.00 32.37 2.32
2904 3000 6.687081 TTTCGTCCTGAAAACTTACACATT 57.313 33.333 0.00 0.00 43.46 2.71
2916 3012 6.227522 TCACTTCAACATATTTCGTCCTGAA 58.772 36.000 0.00 0.00 33.85 3.02
2917 3013 5.789521 TCACTTCAACATATTTCGTCCTGA 58.210 37.500 0.00 0.00 0.00 3.86
2918 3014 5.063944 CCTCACTTCAACATATTTCGTCCTG 59.936 44.000 0.00 0.00 0.00 3.86
2919 3015 5.178797 CCTCACTTCAACATATTTCGTCCT 58.821 41.667 0.00 0.00 0.00 3.85
2920 3016 4.332819 CCCTCACTTCAACATATTTCGTCC 59.667 45.833 0.00 0.00 0.00 4.79
2921 3017 4.201822 GCCCTCACTTCAACATATTTCGTC 60.202 45.833 0.00 0.00 0.00 4.20
2922 3018 3.689649 GCCCTCACTTCAACATATTTCGT 59.310 43.478 0.00 0.00 0.00 3.85
2923 3019 3.941483 AGCCCTCACTTCAACATATTTCG 59.059 43.478 0.00 0.00 0.00 3.46
2924 3020 6.514048 GCATAGCCCTCACTTCAACATATTTC 60.514 42.308 0.00 0.00 0.00 2.17
2925 3021 5.300286 GCATAGCCCTCACTTCAACATATTT 59.700 40.000 0.00 0.00 0.00 1.40
2926 3022 4.823989 GCATAGCCCTCACTTCAACATATT 59.176 41.667 0.00 0.00 0.00 1.28
2927 3023 4.141413 TGCATAGCCCTCACTTCAACATAT 60.141 41.667 0.00 0.00 0.00 1.78
2928 3024 3.199727 TGCATAGCCCTCACTTCAACATA 59.800 43.478 0.00 0.00 0.00 2.29
2929 3025 2.025981 TGCATAGCCCTCACTTCAACAT 60.026 45.455 0.00 0.00 0.00 2.71
2930 3026 1.350684 TGCATAGCCCTCACTTCAACA 59.649 47.619 0.00 0.00 0.00 3.33
2931 3027 2.113860 TGCATAGCCCTCACTTCAAC 57.886 50.000 0.00 0.00 0.00 3.18
2932 3028 2.877097 TTGCATAGCCCTCACTTCAA 57.123 45.000 0.00 0.00 0.00 2.69
2933 3029 2.877097 TTTGCATAGCCCTCACTTCA 57.123 45.000 0.00 0.00 0.00 3.02
2934 3030 3.758554 TCTTTTTGCATAGCCCTCACTTC 59.241 43.478 0.00 0.00 0.00 3.01
2935 3031 3.766545 TCTTTTTGCATAGCCCTCACTT 58.233 40.909 0.00 0.00 0.00 3.16
2936 3032 3.439857 TCTTTTTGCATAGCCCTCACT 57.560 42.857 0.00 0.00 0.00 3.41
2937 3033 4.519540 TTTCTTTTTGCATAGCCCTCAC 57.480 40.909 0.00 0.00 0.00 3.51
2938 3034 5.163364 TGTTTTTCTTTTTGCATAGCCCTCA 60.163 36.000 0.00 0.00 0.00 3.86
2939 3035 5.296748 TGTTTTTCTTTTTGCATAGCCCTC 58.703 37.500 0.00 0.00 0.00 4.30
2940 3036 5.289083 TGTTTTTCTTTTTGCATAGCCCT 57.711 34.783 0.00 0.00 0.00 5.19
2941 3037 6.370433 TTTGTTTTTCTTTTTGCATAGCCC 57.630 33.333 0.00 0.00 0.00 5.19
2942 3038 7.638134 TGATTTGTTTTTCTTTTTGCATAGCC 58.362 30.769 0.00 0.00 0.00 3.93
2943 3039 9.500864 TTTGATTTGTTTTTCTTTTTGCATAGC 57.499 25.926 0.00 0.00 0.00 2.97
2946 3042 9.558648 GTCTTTGATTTGTTTTTCTTTTTGCAT 57.441 25.926 0.00 0.00 0.00 3.96
2947 3043 8.782144 AGTCTTTGATTTGTTTTTCTTTTTGCA 58.218 25.926 0.00 0.00 0.00 4.08
2948 3044 9.611284 AAGTCTTTGATTTGTTTTTCTTTTTGC 57.389 25.926 0.00 0.00 0.00 3.68
2979 3075 9.775854 CCTGAGAAGATGAATAGTATCATTTGT 57.224 33.333 0.00 0.00 40.08 2.83
2980 3076 8.719648 GCCTGAGAAGATGAATAGTATCATTTG 58.280 37.037 0.00 0.00 40.08 2.32
2981 3077 7.882271 GGCCTGAGAAGATGAATAGTATCATTT 59.118 37.037 0.00 0.00 40.08 2.32
2982 3078 7.016957 TGGCCTGAGAAGATGAATAGTATCATT 59.983 37.037 3.32 0.00 40.08 2.57
2983 3079 6.499699 TGGCCTGAGAAGATGAATAGTATCAT 59.500 38.462 3.32 0.00 42.62 2.45
2984 3080 5.840693 TGGCCTGAGAAGATGAATAGTATCA 59.159 40.000 3.32 0.00 0.00 2.15
2985 3081 6.352016 TGGCCTGAGAAGATGAATAGTATC 57.648 41.667 3.32 0.00 0.00 2.24
2986 3082 6.499699 TCATGGCCTGAGAAGATGAATAGTAT 59.500 38.462 3.32 0.00 0.00 2.12
2987 3083 5.840693 TCATGGCCTGAGAAGATGAATAGTA 59.159 40.000 3.32 0.00 0.00 1.82
2988 3084 4.657504 TCATGGCCTGAGAAGATGAATAGT 59.342 41.667 3.32 0.00 0.00 2.12
2989 3085 5.224821 TCATGGCCTGAGAAGATGAATAG 57.775 43.478 3.32 0.00 0.00 1.73
2990 3086 5.635278 TTCATGGCCTGAGAAGATGAATA 57.365 39.130 3.32 0.00 34.68 1.75
2991 3087 4.515028 TTCATGGCCTGAGAAGATGAAT 57.485 40.909 3.32 0.00 34.68 2.57
2992 3088 4.515028 ATTCATGGCCTGAGAAGATGAA 57.485 40.909 13.08 13.08 37.42 2.57
2993 3089 4.515028 AATTCATGGCCTGAGAAGATGA 57.485 40.909 3.32 0.00 34.68 2.92
2994 3090 4.401519 ACAAATTCATGGCCTGAGAAGATG 59.598 41.667 3.32 10.56 34.68 2.90
2995 3091 4.607239 ACAAATTCATGGCCTGAGAAGAT 58.393 39.130 3.32 0.00 34.68 2.40
2996 3092 4.012374 GACAAATTCATGGCCTGAGAAGA 58.988 43.478 3.32 0.00 34.68 2.87
2997 3093 4.015084 AGACAAATTCATGGCCTGAGAAG 58.985 43.478 3.32 0.00 34.68 2.85
2998 3094 4.038271 AGACAAATTCATGGCCTGAGAA 57.962 40.909 3.32 5.89 34.68 2.87
2999 3095 3.726557 AGACAAATTCATGGCCTGAGA 57.273 42.857 3.32 0.00 34.68 3.27
3000 3096 4.796038 AAAGACAAATTCATGGCCTGAG 57.204 40.909 3.32 0.00 34.68 3.35
3001 3097 5.549742 AAAAAGACAAATTCATGGCCTGA 57.450 34.783 3.32 2.06 0.00 3.86
3021 3117 9.187996 TGCCTTGAAATGTGATCTATATCAAAA 57.812 29.630 0.00 0.00 43.69 2.44
3022 3118 8.750515 TGCCTTGAAATGTGATCTATATCAAA 57.249 30.769 0.00 0.00 43.69 2.69
3023 3119 8.929260 ATGCCTTGAAATGTGATCTATATCAA 57.071 30.769 0.00 0.00 43.69 2.57
3024 3120 8.929260 AATGCCTTGAAATGTGATCTATATCA 57.071 30.769 0.00 0.00 39.87 2.15
3025 3121 9.837525 GAAATGCCTTGAAATGTGATCTATATC 57.162 33.333 0.00 0.00 0.00 1.63
3026 3122 9.358406 TGAAATGCCTTGAAATGTGATCTATAT 57.642 29.630 0.00 0.00 0.00 0.86
3027 3123 8.750515 TGAAATGCCTTGAAATGTGATCTATA 57.249 30.769 0.00 0.00 0.00 1.31
3028 3124 7.649533 TGAAATGCCTTGAAATGTGATCTAT 57.350 32.000 0.00 0.00 0.00 1.98
3029 3125 6.405065 GCTGAAATGCCTTGAAATGTGATCTA 60.405 38.462 0.00 0.00 0.00 1.98
3030 3126 5.623824 GCTGAAATGCCTTGAAATGTGATCT 60.624 40.000 0.00 0.00 0.00 2.75
3031 3127 4.565564 GCTGAAATGCCTTGAAATGTGATC 59.434 41.667 0.00 0.00 0.00 2.92
3032 3128 4.501071 GCTGAAATGCCTTGAAATGTGAT 58.499 39.130 0.00 0.00 0.00 3.06
3033 3129 3.916761 GCTGAAATGCCTTGAAATGTGA 58.083 40.909 0.00 0.00 0.00 3.58
3045 3141 4.201618 GCGTAAATTTTCAGGCTGAAATGC 60.202 41.667 35.58 27.76 44.75 3.56
3046 3142 4.922692 TGCGTAAATTTTCAGGCTGAAATG 59.077 37.500 35.58 23.35 44.75 2.32
3047 3143 4.923281 GTGCGTAAATTTTCAGGCTGAAAT 59.077 37.500 35.58 25.62 44.75 2.17
3048 3144 4.202060 TGTGCGTAAATTTTCAGGCTGAAA 60.202 37.500 32.85 32.85 43.84 2.69
3049 3145 3.316588 TGTGCGTAAATTTTCAGGCTGAA 59.683 39.130 25.38 25.38 34.03 3.02
3050 3146 2.881513 TGTGCGTAAATTTTCAGGCTGA 59.118 40.909 14.43 14.43 0.00 4.26
3051 3147 3.281341 TGTGCGTAAATTTTCAGGCTG 57.719 42.857 8.58 8.58 0.00 4.85
3052 3148 4.457603 TGTATGTGCGTAAATTTTCAGGCT 59.542 37.500 0.00 0.00 0.00 4.58
3053 3149 4.557301 GTGTATGTGCGTAAATTTTCAGGC 59.443 41.667 0.00 0.00 0.00 4.85
3054 3150 5.694816 TGTGTATGTGCGTAAATTTTCAGG 58.305 37.500 0.00 0.00 0.00 3.86
3055 3151 8.785101 GTTATGTGTATGTGCGTAAATTTTCAG 58.215 33.333 0.00 0.00 0.00 3.02
3056 3152 8.290325 TGTTATGTGTATGTGCGTAAATTTTCA 58.710 29.630 0.00 0.00 0.00 2.69
3057 3153 8.662369 TGTTATGTGTATGTGCGTAAATTTTC 57.338 30.769 0.00 0.00 0.00 2.29
3058 3154 9.284594 GATGTTATGTGTATGTGCGTAAATTTT 57.715 29.630 0.00 0.00 0.00 1.82
3059 3155 7.913297 GGATGTTATGTGTATGTGCGTAAATTT 59.087 33.333 0.00 0.00 0.00 1.82
3060 3156 7.282224 AGGATGTTATGTGTATGTGCGTAAATT 59.718 33.333 0.00 0.00 0.00 1.82
3061 3157 6.765989 AGGATGTTATGTGTATGTGCGTAAAT 59.234 34.615 0.00 0.00 0.00 1.40
3062 3158 6.110033 AGGATGTTATGTGTATGTGCGTAAA 58.890 36.000 0.00 0.00 0.00 2.01
3063 3159 5.666462 AGGATGTTATGTGTATGTGCGTAA 58.334 37.500 0.00 0.00 0.00 3.18
3064 3160 5.270893 AGGATGTTATGTGTATGTGCGTA 57.729 39.130 0.00 0.00 0.00 4.42
3065 3161 4.137116 AGGATGTTATGTGTATGTGCGT 57.863 40.909 0.00 0.00 0.00 5.24
3066 3162 4.260743 CCAAGGATGTTATGTGTATGTGCG 60.261 45.833 0.00 0.00 0.00 5.34
3067 3163 4.640201 ACCAAGGATGTTATGTGTATGTGC 59.360 41.667 0.00 0.00 0.00 4.57
3068 3164 6.757897 AACCAAGGATGTTATGTGTATGTG 57.242 37.500 0.00 0.00 0.00 3.21
3069 3165 7.630082 AGTAACCAAGGATGTTATGTGTATGT 58.370 34.615 0.00 0.00 31.41 2.29
3070 3166 8.397906 CAAGTAACCAAGGATGTTATGTGTATG 58.602 37.037 0.00 0.00 31.41 2.39
3071 3167 8.107095 ACAAGTAACCAAGGATGTTATGTGTAT 58.893 33.333 0.00 0.00 31.66 2.29
3072 3168 7.455058 ACAAGTAACCAAGGATGTTATGTGTA 58.545 34.615 0.00 0.00 31.66 2.90
3073 3169 6.303839 ACAAGTAACCAAGGATGTTATGTGT 58.696 36.000 0.00 0.00 31.41 3.72
3074 3170 6.817765 ACAAGTAACCAAGGATGTTATGTG 57.182 37.500 0.00 0.00 31.41 3.21
3117 3213 9.658799 TCAACATTTGAACTTTTTGGTATCAAA 57.341 25.926 0.00 0.00 42.26 2.69
3118 3214 9.658799 TTCAACATTTGAACTTTTTGGTATCAA 57.341 25.926 0.00 0.00 44.21 2.57
3153 3249 1.341976 CCCCCATGGAGACCGATTTTT 60.342 52.381 15.22 0.00 35.39 1.94
3154 3250 0.258774 CCCCCATGGAGACCGATTTT 59.741 55.000 15.22 0.00 35.39 1.82
3155 3251 1.922821 CCCCCATGGAGACCGATTT 59.077 57.895 15.22 0.00 35.39 2.17
3156 3252 3.660724 CCCCCATGGAGACCGATT 58.339 61.111 15.22 0.00 35.39 3.34
3175 3271 3.976701 ATGGCGGTTTGGCTCTCGG 62.977 63.158 0.00 0.00 45.14 4.63
3176 3272 1.982073 GAATGGCGGTTTGGCTCTCG 61.982 60.000 0.00 0.00 45.14 4.04
3177 3273 1.657751 GGAATGGCGGTTTGGCTCTC 61.658 60.000 0.00 0.00 45.14 3.20
3178 3274 1.678970 GGAATGGCGGTTTGGCTCT 60.679 57.895 0.00 0.00 45.14 4.09
3179 3275 2.710902 GGGAATGGCGGTTTGGCTC 61.711 63.158 0.00 0.00 45.14 4.70
3180 3276 2.679996 GGGAATGGCGGTTTGGCT 60.680 61.111 0.00 0.00 45.14 4.75
3181 3277 4.128388 CGGGAATGGCGGTTTGGC 62.128 66.667 0.00 0.00 45.12 4.52
3182 3278 1.811645 AAACGGGAATGGCGGTTTGG 61.812 55.000 0.00 0.00 31.88 3.28
3183 3279 0.882474 TAAACGGGAATGGCGGTTTG 59.118 50.000 0.00 0.00 34.68 2.93
3184 3280 0.883153 GTAAACGGGAATGGCGGTTT 59.117 50.000 0.00 0.00 36.62 3.27
3185 3281 0.250814 TGTAAACGGGAATGGCGGTT 60.251 50.000 0.00 0.00 0.00 4.44
3186 3282 0.034863 ATGTAAACGGGAATGGCGGT 60.035 50.000 0.00 0.00 0.00 5.68
3187 3283 0.661020 GATGTAAACGGGAATGGCGG 59.339 55.000 0.00 0.00 0.00 6.13
3188 3284 1.330521 CAGATGTAAACGGGAATGGCG 59.669 52.381 0.00 0.00 0.00 5.69
3189 3285 1.065551 GCAGATGTAAACGGGAATGGC 59.934 52.381 0.00 0.00 0.00 4.40
3190 3286 2.364632 TGCAGATGTAAACGGGAATGG 58.635 47.619 0.00 0.00 0.00 3.16
3191 3287 5.947228 ATATGCAGATGTAAACGGGAATG 57.053 39.130 0.00 0.00 0.00 2.67
3192 3288 8.635765 AAATATATGCAGATGTAAACGGGAAT 57.364 30.769 3.54 0.00 0.00 3.01
3193 3289 8.349245 CAAAATATATGCAGATGTAAACGGGAA 58.651 33.333 3.54 0.00 0.00 3.97
3194 3290 7.717436 TCAAAATATATGCAGATGTAAACGGGA 59.283 33.333 3.54 0.00 0.00 5.14
3195 3291 7.870826 TCAAAATATATGCAGATGTAAACGGG 58.129 34.615 3.54 0.00 0.00 5.28
3196 3292 9.169468 GTTCAAAATATATGCAGATGTAAACGG 57.831 33.333 3.54 0.00 0.00 4.44
3197 3293 9.715123 TGTTCAAAATATATGCAGATGTAAACG 57.285 29.630 3.54 0.00 0.00 3.60
3205 3301 8.768019 CGAGAGAATGTTCAAAATATATGCAGA 58.232 33.333 0.00 0.00 0.00 4.26
3206 3302 8.013947 CCGAGAGAATGTTCAAAATATATGCAG 58.986 37.037 0.00 0.00 0.00 4.41
3207 3303 7.041167 CCCGAGAGAATGTTCAAAATATATGCA 60.041 37.037 0.00 0.00 0.00 3.96
3208 3304 7.041098 ACCCGAGAGAATGTTCAAAATATATGC 60.041 37.037 0.00 0.00 0.00 3.14
3209 3305 8.383318 ACCCGAGAGAATGTTCAAAATATATG 57.617 34.615 0.00 0.00 0.00 1.78
3210 3306 8.840321 CAACCCGAGAGAATGTTCAAAATATAT 58.160 33.333 0.00 0.00 0.00 0.86
3211 3307 7.827236 ACAACCCGAGAGAATGTTCAAAATATA 59.173 33.333 0.00 0.00 0.00 0.86
3212 3308 6.659242 ACAACCCGAGAGAATGTTCAAAATAT 59.341 34.615 0.00 0.00 0.00 1.28
3213 3309 6.001460 ACAACCCGAGAGAATGTTCAAAATA 58.999 36.000 0.00 0.00 0.00 1.40
3214 3310 4.827284 ACAACCCGAGAGAATGTTCAAAAT 59.173 37.500 0.00 0.00 0.00 1.82
3215 3311 4.204012 ACAACCCGAGAGAATGTTCAAAA 58.796 39.130 0.00 0.00 0.00 2.44
3216 3312 3.815809 ACAACCCGAGAGAATGTTCAAA 58.184 40.909 0.00 0.00 0.00 2.69
3217 3313 3.485463 ACAACCCGAGAGAATGTTCAA 57.515 42.857 0.00 0.00 0.00 2.69
3218 3314 3.485463 AACAACCCGAGAGAATGTTCA 57.515 42.857 0.00 0.00 28.61 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.