Multiple sequence alignment - TraesCS5B01G068100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G068100 chr5B 100.000 3188 0 0 1 3188 77671850 77668663 0.000000e+00 5888.0
1 TraesCS5B01G068100 chr5A 92.231 2510 134 39 516 3001 69998913 70001385 0.000000e+00 3498.0
2 TraesCS5B01G068100 chr5A 80.524 878 147 12 1013 1887 14289168 14288312 0.000000e+00 652.0
3 TraesCS5B01G068100 chr5A 91.667 360 23 4 1 358 704088316 704088670 2.860000e-135 492.0
4 TraesCS5B01G068100 chr5A 91.667 360 23 4 1 358 704327880 704328234 2.860000e-135 492.0
5 TraesCS5B01G068100 chr5A 91.111 360 25 4 1 358 704197126 704197480 6.180000e-132 481.0
6 TraesCS5B01G068100 chr5A 91.111 360 23 5 1 358 704240162 704240514 2.220000e-131 479.0
7 TraesCS5B01G068100 chr5A 90.556 360 25 5 1 358 704118863 704119215 4.820000e-128 468.0
8 TraesCS5B01G068100 chr5A 88.587 184 20 1 2986 3169 70001459 70001641 4.140000e-54 222.0
9 TraesCS5B01G068100 chr5A 81.783 258 40 6 2000 2254 14272789 14272536 3.220000e-50 209.0
10 TraesCS5B01G068100 chr5A 91.667 96 8 0 1868 1963 14272888 14272793 2.000000e-27 134.0
11 TraesCS5B01G068100 chr5D 95.821 1364 50 3 364 1720 74734210 74735573 0.000000e+00 2196.0
12 TraesCS5B01G068100 chr5D 90.593 1265 98 16 1745 3002 74736247 74737497 0.000000e+00 1657.0
13 TraesCS5B01G068100 chr5D 83.962 212 21 7 2962 3171 74737529 74737729 1.170000e-44 191.0
14 TraesCS5B01G068100 chr5D 100.000 28 0 0 2925 2952 282366099 282366126 6.000000e-03 52.8
15 TraesCS5B01G068100 chr2A 94.648 355 16 3 1 354 740352857 740353209 6.010000e-152 547.0
16 TraesCS5B01G068100 chr4A 93.838 357 17 4 1 357 686837957 686837606 1.680000e-147 532.0
17 TraesCS5B01G068100 chr3B 91.837 343 24 3 1 341 824107732 824107392 2.880000e-130 475.0
18 TraesCS5B01G068100 chr3B 92.082 341 21 4 1 339 824121112 824120776 2.880000e-130 475.0
19 TraesCS5B01G068100 chr3A 73.744 975 216 35 1178 2140 10687328 10686382 2.350000e-91 346.0
20 TraesCS5B01G068100 chrUn 77.899 552 107 14 1178 1723 284401409 284400867 2.370000e-86 329.0
21 TraesCS5B01G068100 chrUn 77.899 552 107 14 1178 1723 284407943 284407401 2.370000e-86 329.0
22 TraesCS5B01G068100 chrUn 77.899 552 107 14 1178 1723 302991568 302991026 2.370000e-86 329.0
23 TraesCS5B01G068100 chrUn 77.536 552 109 14 1178 1723 257885854 257885312 5.130000e-83 318.0
24 TraesCS5B01G068100 chrUn 79.646 339 60 8 1388 1723 285722542 285722874 5.320000e-58 235.0
25 TraesCS5B01G068100 chr3D 80.405 148 28 1 1155 1302 588015253 588015399 9.350000e-21 111.0
26 TraesCS5B01G068100 chr1A 100.000 32 0 0 2877 2908 240669529 240669560 3.430000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G068100 chr5B 77668663 77671850 3187 True 5888 5888 100.000000 1 3188 1 chr5B.!!$R1 3187
1 TraesCS5B01G068100 chr5A 69998913 70001641 2728 False 1860 3498 90.409000 516 3169 2 chr5A.!!$F6 2653
2 TraesCS5B01G068100 chr5A 14288312 14289168 856 True 652 652 80.524000 1013 1887 1 chr5A.!!$R1 874
3 TraesCS5B01G068100 chr5D 74734210 74737729 3519 False 1348 2196 90.125333 364 3171 3 chr5D.!!$F2 2807
4 TraesCS5B01G068100 chr3A 10686382 10687328 946 True 346 346 73.744000 1178 2140 1 chr3A.!!$R1 962
5 TraesCS5B01G068100 chrUn 284400867 284401409 542 True 329 329 77.899000 1178 1723 1 chrUn.!!$R2 545
6 TraesCS5B01G068100 chrUn 284407401 284407943 542 True 329 329 77.899000 1178 1723 1 chrUn.!!$R3 545
7 TraesCS5B01G068100 chrUn 302991026 302991568 542 True 329 329 77.899000 1178 1723 1 chrUn.!!$R4 545
8 TraesCS5B01G068100 chrUn 257885312 257885854 542 True 318 318 77.536000 1178 1723 1 chrUn.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 158 0.178935 GGAGGATGGGGAGGAGAGAG 60.179 65.0 0.0 0.0 0.00 3.20 F
158 159 0.178935 GAGGATGGGGAGGAGAGAGG 60.179 65.0 0.0 0.0 0.00 3.69 F
160 161 0.178935 GGATGGGGAGGAGAGAGGAG 60.179 65.0 0.0 0.0 0.00 3.69 F
180 181 0.179100 CAGCGGAAGATGTGGATCGT 60.179 55.0 0.0 0.0 43.76 3.73 F
182 183 0.179111 GCGGAAGATGTGGATCGTGA 60.179 55.0 0.0 0.0 33.34 4.35 F
218 219 0.679505 TGTTGGAGTCTGAACGAGGG 59.320 55.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2631 0.035317 TCAACGACATGGCTCAGCTT 59.965 50.000 0.00 0.0 0.00 3.74 R
2028 2693 1.667830 CGGCAGAAGAAAGTCGCCA 60.668 57.895 0.00 0.0 43.13 5.69 R
2155 2820 1.964223 ACTCTGTGATGTCTCCGTTGT 59.036 47.619 0.00 0.0 0.00 3.32 R
2160 2825 2.072298 GTTGCACTCTGTGATGTCTCC 58.928 52.381 1.52 0.0 35.23 3.71 R
2182 2847 4.569564 CGAAGCAAGAGTGATCAATCATGA 59.430 41.667 27.00 0.0 39.30 3.07 R
2242 2907 5.480642 TTGGTAAGACAACGGGTAATACA 57.519 39.130 0.00 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.892425 GCGGATGCGAAGGGACTG 60.892 66.667 12.10 0.00 40.86 3.51
27 28 2.202932 CGGATGCGAAGGGACTGG 60.203 66.667 0.00 0.00 40.86 4.00
28 29 2.721167 CGGATGCGAAGGGACTGGA 61.721 63.158 0.00 0.00 40.86 3.86
29 30 1.153349 GGATGCGAAGGGACTGGAC 60.153 63.158 0.00 0.00 40.86 4.02
30 31 1.153349 GATGCGAAGGGACTGGACC 60.153 63.158 0.00 0.00 40.86 4.46
31 32 1.613630 ATGCGAAGGGACTGGACCT 60.614 57.895 0.00 0.00 40.86 3.85
32 33 1.903877 ATGCGAAGGGACTGGACCTG 61.904 60.000 0.00 0.00 40.86 4.00
33 34 2.982130 CGAAGGGACTGGACCTGG 59.018 66.667 3.15 0.00 40.86 4.45
34 35 2.660064 CGAAGGGACTGGACCTGGG 61.660 68.421 0.00 0.00 40.86 4.45
35 36 1.539124 GAAGGGACTGGACCTGGGT 60.539 63.158 0.00 0.00 40.86 4.51
36 37 1.842381 GAAGGGACTGGACCTGGGTG 61.842 65.000 0.00 0.00 40.86 4.61
37 38 3.330720 GGGACTGGACCTGGGTGG 61.331 72.222 0.00 0.00 42.93 4.61
48 49 4.542627 TGGGTGGTGGGGAGGGTT 62.543 66.667 0.00 0.00 0.00 4.11
49 50 3.190391 GGGTGGTGGGGAGGGTTT 61.190 66.667 0.00 0.00 0.00 3.27
50 51 2.117423 GGTGGTGGGGAGGGTTTG 59.883 66.667 0.00 0.00 0.00 2.93
51 52 2.117423 GTGGTGGGGAGGGTTTGG 59.883 66.667 0.00 0.00 0.00 3.28
52 53 3.189646 TGGTGGGGAGGGTTTGGG 61.190 66.667 0.00 0.00 0.00 4.12
53 54 3.190391 GGTGGGGAGGGTTTGGGT 61.190 66.667 0.00 0.00 0.00 4.51
54 55 2.117423 GTGGGGAGGGTTTGGGTG 59.883 66.667 0.00 0.00 0.00 4.61
55 56 3.189646 TGGGGAGGGTTTGGGTGG 61.190 66.667 0.00 0.00 0.00 4.61
56 57 4.696805 GGGGAGGGTTTGGGTGGC 62.697 72.222 0.00 0.00 0.00 5.01
58 59 3.961414 GGAGGGTTTGGGTGGCGA 61.961 66.667 0.00 0.00 0.00 5.54
59 60 2.671963 GAGGGTTTGGGTGGCGAC 60.672 66.667 0.00 0.00 0.00 5.19
60 61 4.636435 AGGGTTTGGGTGGCGACG 62.636 66.667 0.00 0.00 0.00 5.12
63 64 4.629523 GTTTGGGTGGCGACGGGA 62.630 66.667 0.00 0.00 0.00 5.14
64 65 3.875023 TTTGGGTGGCGACGGGAA 61.875 61.111 0.00 0.00 0.00 3.97
65 66 3.835790 TTTGGGTGGCGACGGGAAG 62.836 63.158 0.00 0.00 0.00 3.46
67 68 4.754667 GGGTGGCGACGGGAAGAC 62.755 72.222 0.00 0.00 0.00 3.01
71 72 4.060038 GGCGACGGGAAGACGGAA 62.060 66.667 0.00 0.00 38.39 4.30
72 73 2.808321 GCGACGGGAAGACGGAAC 60.808 66.667 0.00 0.00 38.39 3.62
73 74 2.960170 CGACGGGAAGACGGAACT 59.040 61.111 0.00 0.00 38.39 3.01
74 75 1.443872 CGACGGGAAGACGGAACTG 60.444 63.158 0.00 0.00 38.39 3.16
75 76 1.080025 GACGGGAAGACGGAACTGG 60.080 63.158 0.00 0.00 38.39 4.00
76 77 1.813728 GACGGGAAGACGGAACTGGT 61.814 60.000 0.00 0.00 38.39 4.00
77 78 1.080025 CGGGAAGACGGAACTGGTC 60.080 63.158 0.00 0.00 34.62 4.02
78 79 1.812686 CGGGAAGACGGAACTGGTCA 61.813 60.000 0.00 0.00 36.87 4.02
79 80 0.613777 GGGAAGACGGAACTGGTCAT 59.386 55.000 0.00 0.00 36.87 3.06
80 81 1.405661 GGGAAGACGGAACTGGTCATC 60.406 57.143 0.00 0.00 36.87 2.92
81 82 1.630148 GAAGACGGAACTGGTCATCG 58.370 55.000 0.00 0.00 36.87 3.84
82 83 0.966920 AAGACGGAACTGGTCATCGT 59.033 50.000 0.00 0.00 36.87 3.73
83 84 3.031660 GACGGAACTGGTCATCGTC 57.968 57.895 8.37 8.37 42.22 4.20
84 85 0.797249 GACGGAACTGGTCATCGTCG 60.797 60.000 8.37 0.00 40.22 5.12
85 86 1.516386 CGGAACTGGTCATCGTCGG 60.516 63.158 0.00 0.00 0.00 4.79
86 87 1.888018 GGAACTGGTCATCGTCGGA 59.112 57.895 0.00 0.00 0.00 4.55
87 88 0.458025 GGAACTGGTCATCGTCGGAC 60.458 60.000 0.00 0.00 34.52 4.79
88 89 0.526662 GAACTGGTCATCGTCGGACT 59.473 55.000 6.57 0.00 35.61 3.85
89 90 0.526662 AACTGGTCATCGTCGGACTC 59.473 55.000 6.57 0.00 35.61 3.36
90 91 1.313812 ACTGGTCATCGTCGGACTCC 61.314 60.000 6.57 2.17 35.61 3.85
113 114 4.779733 GCCGGGGGAGGAGACAGA 62.780 72.222 2.18 0.00 0.00 3.41
114 115 2.443016 CCGGGGGAGGAGACAGAG 60.443 72.222 0.00 0.00 0.00 3.35
115 116 2.443016 CGGGGGAGGAGACAGAGG 60.443 72.222 0.00 0.00 0.00 3.69
116 117 2.997584 CGGGGGAGGAGACAGAGGA 61.998 68.421 0.00 0.00 0.00 3.71
117 118 1.075600 GGGGGAGGAGACAGAGGAG 60.076 68.421 0.00 0.00 0.00 3.69
118 119 1.075600 GGGGAGGAGACAGAGGAGG 60.076 68.421 0.00 0.00 0.00 4.30
119 120 1.585651 GGGGAGGAGACAGAGGAGGA 61.586 65.000 0.00 0.00 0.00 3.71
120 121 0.336737 GGGAGGAGACAGAGGAGGAA 59.663 60.000 0.00 0.00 0.00 3.36
121 122 1.687996 GGGAGGAGACAGAGGAGGAAG 60.688 61.905 0.00 0.00 0.00 3.46
122 123 1.006639 GGAGGAGACAGAGGAGGAAGT 59.993 57.143 0.00 0.00 0.00 3.01
123 124 2.099405 GAGGAGACAGAGGAGGAAGTG 58.901 57.143 0.00 0.00 0.00 3.16
124 125 0.534873 GGAGACAGAGGAGGAAGTGC 59.465 60.000 0.00 0.00 0.00 4.40
125 126 1.555967 GAGACAGAGGAGGAAGTGCT 58.444 55.000 0.00 0.00 0.00 4.40
126 127 1.476488 GAGACAGAGGAGGAAGTGCTC 59.524 57.143 0.00 0.00 43.95 4.26
127 128 1.203112 AGACAGAGGAGGAAGTGCTCA 60.203 52.381 2.09 0.00 46.01 4.26
128 129 1.830477 GACAGAGGAGGAAGTGCTCAT 59.170 52.381 2.09 0.00 46.01 2.90
129 130 1.554160 ACAGAGGAGGAAGTGCTCATG 59.446 52.381 2.09 0.75 46.01 3.07
130 131 1.134461 CAGAGGAGGAAGTGCTCATGG 60.134 57.143 2.09 0.00 46.01 3.66
131 132 0.463474 GAGGAGGAAGTGCTCATGGC 60.463 60.000 2.09 0.00 43.11 4.40
132 133 1.817099 GGAGGAAGTGCTCATGGCG 60.817 63.158 2.09 0.00 45.43 5.69
133 134 1.817099 GAGGAAGTGCTCATGGCGG 60.817 63.158 0.00 0.00 45.43 6.13
134 135 2.045926 GGAAGTGCTCATGGCGGT 60.046 61.111 0.00 0.00 45.43 5.68
135 136 2.109126 GGAAGTGCTCATGGCGGTC 61.109 63.158 0.00 0.00 45.43 4.79
136 137 2.434884 AAGTGCTCATGGCGGTCG 60.435 61.111 0.00 0.00 45.43 4.79
137 138 3.240134 AAGTGCTCATGGCGGTCGT 62.240 57.895 0.00 0.00 45.43 4.34
138 139 3.490759 GTGCTCATGGCGGTCGTG 61.491 66.667 0.00 0.00 45.43 4.35
139 140 4.758251 TGCTCATGGCGGTCGTGG 62.758 66.667 1.41 0.00 45.43 4.94
140 141 4.451150 GCTCATGGCGGTCGTGGA 62.451 66.667 1.41 0.00 33.31 4.02
141 142 2.202797 CTCATGGCGGTCGTGGAG 60.203 66.667 1.41 0.00 33.31 3.86
142 143 3.723235 CTCATGGCGGTCGTGGAGG 62.723 68.421 1.41 0.00 33.31 4.30
143 144 3.770040 CATGGCGGTCGTGGAGGA 61.770 66.667 0.00 0.00 0.00 3.71
144 145 2.764128 ATGGCGGTCGTGGAGGAT 60.764 61.111 0.00 0.00 0.00 3.24
145 146 3.094062 ATGGCGGTCGTGGAGGATG 62.094 63.158 0.00 0.00 0.00 3.51
146 147 4.530857 GGCGGTCGTGGAGGATGG 62.531 72.222 0.00 0.00 0.00 3.51
147 148 4.530857 GCGGTCGTGGAGGATGGG 62.531 72.222 0.00 0.00 0.00 4.00
148 149 3.849951 CGGTCGTGGAGGATGGGG 61.850 72.222 0.00 0.00 0.00 4.96
149 150 2.365105 GGTCGTGGAGGATGGGGA 60.365 66.667 0.00 0.00 0.00 4.81
150 151 2.435693 GGTCGTGGAGGATGGGGAG 61.436 68.421 0.00 0.00 0.00 4.30
151 152 2.041922 TCGTGGAGGATGGGGAGG 60.042 66.667 0.00 0.00 0.00 4.30
152 153 2.041922 CGTGGAGGATGGGGAGGA 60.042 66.667 0.00 0.00 0.00 3.71
153 154 2.136878 CGTGGAGGATGGGGAGGAG 61.137 68.421 0.00 0.00 0.00 3.69
154 155 1.314867 GTGGAGGATGGGGAGGAGA 59.685 63.158 0.00 0.00 0.00 3.71
155 156 0.762461 GTGGAGGATGGGGAGGAGAG 60.762 65.000 0.00 0.00 0.00 3.20
156 157 0.931250 TGGAGGATGGGGAGGAGAGA 60.931 60.000 0.00 0.00 0.00 3.10
157 158 0.178935 GGAGGATGGGGAGGAGAGAG 60.179 65.000 0.00 0.00 0.00 3.20
158 159 0.178935 GAGGATGGGGAGGAGAGAGG 60.179 65.000 0.00 0.00 0.00 3.69
159 160 0.631998 AGGATGGGGAGGAGAGAGGA 60.632 60.000 0.00 0.00 0.00 3.71
160 161 0.178935 GGATGGGGAGGAGAGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
161 162 0.831711 GATGGGGAGGAGAGAGGAGC 60.832 65.000 0.00 0.00 0.00 4.70
162 163 1.597905 ATGGGGAGGAGAGAGGAGCA 61.598 60.000 0.00 0.00 0.00 4.26
163 164 1.457455 GGGGAGGAGAGAGGAGCAG 60.457 68.421 0.00 0.00 0.00 4.24
164 165 2.133641 GGGAGGAGAGAGGAGCAGC 61.134 68.421 0.00 0.00 0.00 5.25
165 166 2.489275 GGAGGAGAGAGGAGCAGCG 61.489 68.421 0.00 0.00 0.00 5.18
166 167 2.441901 AGGAGAGAGGAGCAGCGG 60.442 66.667 0.00 0.00 0.00 5.52
167 168 2.441164 GGAGAGAGGAGCAGCGGA 60.441 66.667 0.00 0.00 0.00 5.54
168 169 2.055042 GGAGAGAGGAGCAGCGGAA 61.055 63.158 0.00 0.00 0.00 4.30
169 170 1.437160 GAGAGAGGAGCAGCGGAAG 59.563 63.158 0.00 0.00 0.00 3.46
170 171 1.000270 AGAGAGGAGCAGCGGAAGA 60.000 57.895 0.00 0.00 0.00 2.87
171 172 0.396974 AGAGAGGAGCAGCGGAAGAT 60.397 55.000 0.00 0.00 0.00 2.40
179 180 2.598045 CAGCGGAAGATGTGGATCG 58.402 57.895 0.00 0.00 43.76 3.69
180 181 0.179100 CAGCGGAAGATGTGGATCGT 60.179 55.000 0.00 0.00 43.76 3.73
181 182 0.179100 AGCGGAAGATGTGGATCGTG 60.179 55.000 0.00 0.00 33.34 4.35
182 183 0.179111 GCGGAAGATGTGGATCGTGA 60.179 55.000 0.00 0.00 33.34 4.35
183 184 1.845266 CGGAAGATGTGGATCGTGAG 58.155 55.000 0.00 0.00 33.34 3.51
184 185 1.135139 CGGAAGATGTGGATCGTGAGT 59.865 52.381 0.00 0.00 33.34 3.41
185 186 2.417379 CGGAAGATGTGGATCGTGAGTT 60.417 50.000 0.00 0.00 33.34 3.01
186 187 3.190874 GGAAGATGTGGATCGTGAGTTC 58.809 50.000 0.00 0.00 33.34 3.01
187 188 3.368427 GGAAGATGTGGATCGTGAGTTCA 60.368 47.826 0.00 0.00 33.34 3.18
188 189 3.961480 AGATGTGGATCGTGAGTTCAA 57.039 42.857 0.00 0.00 33.34 2.69
189 190 4.271696 AGATGTGGATCGTGAGTTCAAA 57.728 40.909 0.00 0.00 33.34 2.69
190 191 3.997021 AGATGTGGATCGTGAGTTCAAAC 59.003 43.478 0.00 0.00 33.34 2.93
191 192 3.469008 TGTGGATCGTGAGTTCAAACT 57.531 42.857 0.00 0.00 43.16 2.66
192 193 3.130633 TGTGGATCGTGAGTTCAAACTG 58.869 45.455 0.00 0.00 39.88 3.16
193 194 3.181470 TGTGGATCGTGAGTTCAAACTGA 60.181 43.478 0.00 0.00 39.88 3.41
194 195 3.997021 GTGGATCGTGAGTTCAAACTGAT 59.003 43.478 0.00 0.00 39.88 2.90
195 196 5.168569 GTGGATCGTGAGTTCAAACTGATA 58.831 41.667 0.00 0.00 39.88 2.15
196 197 5.062308 GTGGATCGTGAGTTCAAACTGATAC 59.938 44.000 0.00 0.00 39.88 2.24
197 198 4.567159 GGATCGTGAGTTCAAACTGATACC 59.433 45.833 0.00 0.00 39.88 2.73
198 199 4.594123 TCGTGAGTTCAAACTGATACCA 57.406 40.909 0.00 0.00 39.88 3.25
199 200 5.147330 TCGTGAGTTCAAACTGATACCAT 57.853 39.130 0.00 0.00 39.88 3.55
200 201 4.929211 TCGTGAGTTCAAACTGATACCATG 59.071 41.667 0.00 0.00 39.88 3.66
201 202 4.690748 CGTGAGTTCAAACTGATACCATGT 59.309 41.667 0.00 0.00 39.88 3.21
202 203 5.179368 CGTGAGTTCAAACTGATACCATGTT 59.821 40.000 0.00 0.00 39.88 2.71
203 204 6.373779 GTGAGTTCAAACTGATACCATGTTG 58.626 40.000 0.00 0.00 39.88 3.33
204 205 5.473162 TGAGTTCAAACTGATACCATGTTGG 59.527 40.000 0.00 0.00 40.84 3.77
205 206 5.630121 AGTTCAAACTGATACCATGTTGGA 58.370 37.500 0.00 0.00 37.54 3.53
206 207 5.707298 AGTTCAAACTGATACCATGTTGGAG 59.293 40.000 0.00 0.00 37.54 3.86
207 208 5.241403 TCAAACTGATACCATGTTGGAGT 57.759 39.130 0.00 0.00 40.96 3.85
208 209 5.245531 TCAAACTGATACCATGTTGGAGTC 58.754 41.667 0.00 0.00 40.96 3.36
209 210 5.013079 TCAAACTGATACCATGTTGGAGTCT 59.987 40.000 0.00 0.00 40.96 3.24
210 211 4.478206 ACTGATACCATGTTGGAGTCTG 57.522 45.455 0.00 4.85 40.96 3.51
211 212 4.096681 ACTGATACCATGTTGGAGTCTGA 58.903 43.478 0.00 0.00 40.96 3.27
212 213 4.532126 ACTGATACCATGTTGGAGTCTGAA 59.468 41.667 0.00 0.00 40.96 3.02
213 214 4.832248 TGATACCATGTTGGAGTCTGAAC 58.168 43.478 0.00 0.00 40.96 3.18
214 215 2.169832 ACCATGTTGGAGTCTGAACG 57.830 50.000 0.00 0.00 40.96 3.95
215 216 1.691976 ACCATGTTGGAGTCTGAACGA 59.308 47.619 0.00 0.00 40.96 3.85
216 217 2.289072 ACCATGTTGGAGTCTGAACGAG 60.289 50.000 0.00 0.00 40.96 4.18
217 218 2.341257 CATGTTGGAGTCTGAACGAGG 58.659 52.381 0.00 0.00 0.00 4.63
218 219 0.679505 TGTTGGAGTCTGAACGAGGG 59.320 55.000 0.00 0.00 0.00 4.30
219 220 0.680061 GTTGGAGTCTGAACGAGGGT 59.320 55.000 0.00 0.00 0.00 4.34
220 221 1.891150 GTTGGAGTCTGAACGAGGGTA 59.109 52.381 0.00 0.00 0.00 3.69
221 222 2.496470 GTTGGAGTCTGAACGAGGGTAT 59.504 50.000 0.00 0.00 0.00 2.73
222 223 2.376109 TGGAGTCTGAACGAGGGTATC 58.624 52.381 0.00 0.00 0.00 2.24
239 240 3.460648 TCGAGAGAGAGATCGTGCA 57.539 52.632 0.00 0.00 39.86 4.57
240 241 1.739067 TCGAGAGAGAGATCGTGCAA 58.261 50.000 0.00 0.00 39.86 4.08
241 242 1.398739 TCGAGAGAGAGATCGTGCAAC 59.601 52.381 0.00 0.00 39.86 4.17
242 243 1.131315 CGAGAGAGAGATCGTGCAACA 59.869 52.381 0.00 0.00 35.74 3.33
243 244 2.525055 GAGAGAGAGATCGTGCAACAC 58.475 52.381 0.00 0.00 35.74 3.32
244 245 2.163412 GAGAGAGAGATCGTGCAACACT 59.837 50.000 0.00 0.00 35.74 3.55
245 246 2.560542 AGAGAGAGATCGTGCAACACTT 59.439 45.455 0.00 0.00 35.74 3.16
246 247 2.920490 GAGAGAGATCGTGCAACACTTC 59.080 50.000 0.00 0.00 35.74 3.01
247 248 1.996191 GAGAGATCGTGCAACACTTCC 59.004 52.381 0.00 0.00 35.74 3.46
248 249 1.620819 AGAGATCGTGCAACACTTCCT 59.379 47.619 0.00 0.00 35.74 3.36
249 250 2.037772 AGAGATCGTGCAACACTTCCTT 59.962 45.455 0.00 0.00 35.74 3.36
250 251 2.146342 AGATCGTGCAACACTTCCTTG 58.854 47.619 0.00 0.00 35.74 3.61
251 252 2.143122 GATCGTGCAACACTTCCTTGA 58.857 47.619 0.00 0.00 35.74 3.02
252 253 2.254546 TCGTGCAACACTTCCTTGAT 57.745 45.000 0.00 0.00 35.74 2.57
253 254 2.571212 TCGTGCAACACTTCCTTGATT 58.429 42.857 0.00 0.00 35.74 2.57
254 255 3.734463 TCGTGCAACACTTCCTTGATTA 58.266 40.909 0.00 0.00 35.74 1.75
255 256 4.323417 TCGTGCAACACTTCCTTGATTAT 58.677 39.130 0.00 0.00 35.74 1.28
256 257 5.483811 TCGTGCAACACTTCCTTGATTATA 58.516 37.500 0.00 0.00 35.74 0.98
257 258 5.935206 TCGTGCAACACTTCCTTGATTATAA 59.065 36.000 0.00 0.00 35.74 0.98
258 259 6.597672 TCGTGCAACACTTCCTTGATTATAAT 59.402 34.615 0.00 0.00 35.74 1.28
259 260 7.120579 TCGTGCAACACTTCCTTGATTATAATT 59.879 33.333 0.00 0.00 35.74 1.40
260 261 7.218773 CGTGCAACACTTCCTTGATTATAATTG 59.781 37.037 0.00 0.00 35.74 2.32
261 262 8.243426 GTGCAACACTTCCTTGATTATAATTGA 58.757 33.333 0.00 0.00 36.32 2.57
262 263 8.461222 TGCAACACTTCCTTGATTATAATTGAG 58.539 33.333 0.00 1.35 0.00 3.02
263 264 7.917505 GCAACACTTCCTTGATTATAATTGAGG 59.082 37.037 16.39 16.39 0.00 3.86
264 265 8.960591 CAACACTTCCTTGATTATAATTGAGGT 58.039 33.333 19.50 10.37 0.00 3.85
265 266 9.533831 AACACTTCCTTGATTATAATTGAGGTT 57.466 29.630 19.50 9.59 0.00 3.50
270 271 9.967451 TTCCTTGATTATAATTGAGGTTACACA 57.033 29.630 19.50 1.69 0.00 3.72
275 276 9.679661 TGATTATAATTGAGGTTACACATGTGT 57.320 29.630 32.47 32.47 46.87 3.72
292 293 9.035890 ACACATGTGTATATATATACTGGCTGT 57.964 33.333 29.66 20.64 42.90 4.40
293 294 9.875691 CACATGTGTATATATATACTGGCTGTT 57.124 33.333 25.95 8.47 39.36 3.16
308 309 7.611213 ACTGGCTGTTACAATAGAATTACAC 57.389 36.000 0.00 0.00 0.00 2.90
309 310 6.598064 ACTGGCTGTTACAATAGAATTACACC 59.402 38.462 0.00 0.00 0.00 4.16
310 311 6.477253 TGGCTGTTACAATAGAATTACACCA 58.523 36.000 0.00 0.00 0.00 4.17
311 312 6.597672 TGGCTGTTACAATAGAATTACACCAG 59.402 38.462 0.00 0.00 0.00 4.00
312 313 6.598064 GGCTGTTACAATAGAATTACACCAGT 59.402 38.462 0.00 0.00 0.00 4.00
313 314 7.201617 GGCTGTTACAATAGAATTACACCAGTC 60.202 40.741 0.00 0.00 0.00 3.51
314 315 7.549488 GCTGTTACAATAGAATTACACCAGTCT 59.451 37.037 0.00 0.00 0.00 3.24
317 318 9.032420 GTTACAATAGAATTACACCAGTCTAGC 57.968 37.037 0.00 0.00 0.00 3.42
318 319 6.583562 ACAATAGAATTACACCAGTCTAGCC 58.416 40.000 0.00 0.00 0.00 3.93
319 320 6.384305 ACAATAGAATTACACCAGTCTAGCCT 59.616 38.462 0.00 0.00 0.00 4.58
320 321 7.563924 ACAATAGAATTACACCAGTCTAGCCTA 59.436 37.037 0.00 0.00 0.00 3.93
321 322 8.421784 CAATAGAATTACACCAGTCTAGCCTAA 58.578 37.037 0.00 0.00 0.00 2.69
322 323 6.472686 AGAATTACACCAGTCTAGCCTAAG 57.527 41.667 0.00 0.00 0.00 2.18
323 324 5.364157 AGAATTACACCAGTCTAGCCTAAGG 59.636 44.000 0.00 0.00 0.00 2.69
324 325 2.921834 ACACCAGTCTAGCCTAAGGA 57.078 50.000 0.00 0.00 0.00 3.36
325 326 3.185880 ACACCAGTCTAGCCTAAGGAA 57.814 47.619 0.00 0.00 0.00 3.36
326 327 3.725634 ACACCAGTCTAGCCTAAGGAAT 58.274 45.455 0.00 0.00 0.00 3.01
327 328 4.880164 ACACCAGTCTAGCCTAAGGAATA 58.120 43.478 0.00 0.00 0.00 1.75
328 329 4.896482 ACACCAGTCTAGCCTAAGGAATAG 59.104 45.833 0.00 0.00 0.00 1.73
329 330 5.141182 CACCAGTCTAGCCTAAGGAATAGA 58.859 45.833 0.00 0.00 33.04 1.98
330 331 5.598830 CACCAGTCTAGCCTAAGGAATAGAA 59.401 44.000 0.00 0.00 33.04 2.10
331 332 5.599242 ACCAGTCTAGCCTAAGGAATAGAAC 59.401 44.000 0.00 0.00 33.04 3.01
332 333 5.011227 CCAGTCTAGCCTAAGGAATAGAACC 59.989 48.000 0.00 0.00 33.04 3.62
333 334 5.598830 CAGTCTAGCCTAAGGAATAGAACCA 59.401 44.000 0.00 0.00 33.04 3.67
334 335 5.599242 AGTCTAGCCTAAGGAATAGAACCAC 59.401 44.000 0.00 0.00 33.04 4.16
335 336 5.599242 GTCTAGCCTAAGGAATAGAACCACT 59.401 44.000 0.00 0.00 33.04 4.00
336 337 6.776603 GTCTAGCCTAAGGAATAGAACCACTA 59.223 42.308 0.00 0.00 33.04 2.74
337 338 5.873146 AGCCTAAGGAATAGAACCACTAC 57.127 43.478 0.00 0.00 33.04 2.73
338 339 5.278061 AGCCTAAGGAATAGAACCACTACA 58.722 41.667 0.00 0.00 33.04 2.74
339 340 5.905913 AGCCTAAGGAATAGAACCACTACAT 59.094 40.000 0.00 0.00 33.04 2.29
340 341 7.073854 AGCCTAAGGAATAGAACCACTACATA 58.926 38.462 0.00 0.00 33.04 2.29
341 342 7.567622 AGCCTAAGGAATAGAACCACTACATAA 59.432 37.037 0.00 0.00 33.04 1.90
342 343 7.873505 GCCTAAGGAATAGAACCACTACATAAG 59.126 40.741 0.00 0.00 33.04 1.73
343 344 7.873505 CCTAAGGAATAGAACCACTACATAAGC 59.126 40.741 0.00 0.00 33.04 3.09
344 345 6.808321 AGGAATAGAACCACTACATAAGCA 57.192 37.500 0.00 0.00 33.62 3.91
345 346 6.583562 AGGAATAGAACCACTACATAAGCAC 58.416 40.000 0.00 0.00 33.62 4.40
346 347 5.462398 GGAATAGAACCACTACATAAGCACG 59.538 44.000 0.00 0.00 33.62 5.34
347 348 3.955650 AGAACCACTACATAAGCACGT 57.044 42.857 0.00 0.00 0.00 4.49
348 349 4.267349 AGAACCACTACATAAGCACGTT 57.733 40.909 0.00 0.00 0.00 3.99
349 350 4.243270 AGAACCACTACATAAGCACGTTC 58.757 43.478 0.00 0.00 32.16 3.95
350 351 2.602878 ACCACTACATAAGCACGTTCG 58.397 47.619 0.00 0.00 0.00 3.95
351 352 1.323534 CCACTACATAAGCACGTTCGC 59.676 52.381 0.00 0.00 0.00 4.70
352 353 2.259618 CACTACATAAGCACGTTCGCT 58.740 47.619 0.00 0.00 46.67 4.93
353 354 3.431856 CACTACATAAGCACGTTCGCTA 58.568 45.455 0.23 0.00 42.89 4.26
354 355 3.482472 CACTACATAAGCACGTTCGCTAG 59.518 47.826 0.23 0.00 42.89 3.42
355 356 1.278238 ACATAAGCACGTTCGCTAGC 58.722 50.000 4.06 4.06 42.89 3.42
356 357 1.277326 CATAAGCACGTTCGCTAGCA 58.723 50.000 16.45 0.00 42.89 3.49
357 358 1.658596 CATAAGCACGTTCGCTAGCAA 59.341 47.619 16.45 5.52 42.89 3.91
358 359 1.065358 TAAGCACGTTCGCTAGCAAC 58.935 50.000 16.45 16.01 42.89 4.17
362 363 2.681666 CGTTCGCTAGCAACGTCG 59.318 61.111 28.64 17.11 41.39 5.12
370 371 0.793478 CTAGCAACGTCGACACCTCG 60.793 60.000 17.16 3.32 41.65 4.63
371 372 2.791396 TAGCAACGTCGACACCTCGC 62.791 60.000 17.16 10.07 39.96 5.03
405 406 2.060567 ATGGCTGTCACAGTGCCTGT 62.061 55.000 6.68 2.38 46.51 4.00
441 442 1.246056 AATCGCAAGGTGCAGCATGT 61.246 50.000 20.78 2.07 45.36 3.21
462 463 1.961277 GGGCGCGGTCATAGATTGG 60.961 63.158 8.83 0.00 0.00 3.16
505 506 1.062587 GACGATAGCCACAATGTGCAC 59.937 52.381 10.75 10.75 42.67 4.57
623 624 2.091541 GATTGGTTGCCTCGATCCAAA 58.908 47.619 0.00 0.00 42.10 3.28
793 801 6.340962 ACGTATGTATACACTGCCACATAT 57.659 37.500 7.96 0.00 36.54 1.78
891 899 5.420739 ACTTTTCTCTCTACCTAGCTTCCTG 59.579 44.000 0.00 0.00 0.00 3.86
1173 1182 6.737720 AGCCATCAGTTAATCTCTCATGTA 57.262 37.500 0.00 0.00 0.00 2.29
1248 1257 5.194432 GGGGGCTTTGGAAAAGTTTTTAAA 58.806 37.500 1.64 6.87 0.00 1.52
1314 1323 3.414700 CGGTCCAAGCACAGCGTC 61.415 66.667 0.00 0.00 0.00 5.19
1493 1502 2.510613 GGGAAGACAATTCGGGTTTCA 58.489 47.619 0.00 0.00 0.00 2.69
1497 1506 4.217550 GGAAGACAATTCGGGTTTCATGAA 59.782 41.667 3.38 3.38 0.00 2.57
1505 1514 3.078837 TCGGGTTTCATGAAAGGTTAGC 58.921 45.455 21.05 9.23 0.00 3.09
1510 1519 2.024176 TCATGAAAGGTTAGCCGCTC 57.976 50.000 0.00 0.00 40.50 5.03
1540 1549 5.376625 ACGTATCAATGGCAATGGAGTATT 58.623 37.500 2.15 0.00 0.00 1.89
1692 1702 2.002586 ACGATCTCTTCAAACATGCCG 58.997 47.619 0.00 0.00 0.00 5.69
1727 1737 6.127140 GGATACATGTCACCAGGTACTTAAGT 60.127 42.308 13.68 13.68 40.32 2.24
1793 2458 6.370994 ACTCATGAGTCATGTTGAAATCTGTC 59.629 38.462 28.03 0.00 41.98 3.51
1927 2592 3.319405 AGATGCTATGTTCGTCGGAGAAT 59.681 43.478 0.00 0.00 39.69 2.40
1935 2600 2.858941 GTTCGTCGGAGAATTAAGCCTC 59.141 50.000 0.00 0.00 39.69 4.70
1966 2631 3.572255 GGTTTACCAGTCATTTCCTGCAA 59.428 43.478 0.00 0.00 35.64 4.08
1973 2638 2.818432 AGTCATTTCCTGCAAAGCTGAG 59.182 45.455 0.00 0.00 0.00 3.35
2082 2747 1.290324 GCTCTGCTCCAACGACTCA 59.710 57.895 0.00 0.00 0.00 3.41
2155 2820 4.650734 TCAAATGAAGTACACTGCATGGA 58.349 39.130 3.54 2.86 41.33 3.41
2160 2825 1.795768 AGTACACTGCATGGACAACG 58.204 50.000 12.24 0.00 45.86 4.10
2182 2847 3.332919 GAGACATCACAGAGTGCAACAT 58.667 45.455 0.00 0.00 41.43 2.71
2217 2882 9.935241 ATCACTCTTGCTTCGATATATTAATGT 57.065 29.630 0.00 0.00 0.00 2.71
2267 2935 5.890424 ATTACCCGTTGTCTTACCAATTG 57.110 39.130 0.00 0.00 0.00 2.32
2268 2936 3.495434 ACCCGTTGTCTTACCAATTGA 57.505 42.857 7.12 0.00 0.00 2.57
2269 2937 3.143728 ACCCGTTGTCTTACCAATTGAC 58.856 45.455 7.12 0.00 0.00 3.18
2290 2958 3.004106 ACGTATACTAGTCATCAACCCGC 59.996 47.826 0.00 0.00 0.00 6.13
2291 2959 3.004002 CGTATACTAGTCATCAACCCGCA 59.996 47.826 0.00 0.00 0.00 5.69
2293 2961 0.973632 ACTAGTCATCAACCCGCACA 59.026 50.000 0.00 0.00 0.00 4.57
2320 2988 4.226761 CACGGGCTAGTGATTTTGAAAAC 58.773 43.478 7.67 0.00 44.43 2.43
2321 2989 3.886505 ACGGGCTAGTGATTTTGAAAACA 59.113 39.130 0.00 0.00 0.00 2.83
2350 3021 4.913335 AAGGAAACGGAAGAACTTTTCC 57.087 40.909 6.19 6.19 45.04 3.13
2388 3059 6.142817 AGTGTTTGAAATGTATGCGAACTTC 58.857 36.000 0.00 0.00 0.00 3.01
2426 3097 9.096823 TCTCCTAACCGATAATTATACACCATT 57.903 33.333 0.00 0.00 0.00 3.16
2427 3098 9.151471 CTCCTAACCGATAATTATACACCATTG 57.849 37.037 0.00 0.00 0.00 2.82
2543 3215 9.314321 CCAATAGAAGAATCAGTAACACGTATT 57.686 33.333 0.00 0.00 0.00 1.89
2550 3222 6.757010 AGAATCAGTAACACGTATTCATGGTC 59.243 38.462 7.49 0.00 31.15 4.02
2642 3314 7.497595 AGCATTGTTATTATAGACGAAGGACA 58.502 34.615 0.00 0.00 0.00 4.02
2893 3582 8.164070 ACTCCCTACCATCCATATTAATTGTTC 58.836 37.037 0.00 0.00 0.00 3.18
2957 3646 9.639563 TTAGCAACAATTAATATGAATGGGAGA 57.360 29.630 0.00 0.00 0.00 3.71
2977 3666 8.865090 TGGGAGAGAGTATTAAAAATGCAAAAA 58.135 29.630 0.00 0.00 0.00 1.94
2978 3667 9.358872 GGGAGAGAGTATTAAAAATGCAAAAAG 57.641 33.333 0.00 0.00 0.00 2.27
3039 3819 3.504863 GCAAATGAAGTACACTGCATGG 58.495 45.455 3.54 1.55 41.33 3.66
3085 3865 4.630644 ACACCATGACTGATCACTCTTT 57.369 40.909 0.00 0.00 37.79 2.52
3086 3866 4.978099 ACACCATGACTGATCACTCTTTT 58.022 39.130 0.00 0.00 37.79 2.27
3093 3873 5.371526 TGACTGATCACTCTTTTCAGCTTT 58.628 37.500 0.00 0.00 40.40 3.51
3094 3874 6.524734 TGACTGATCACTCTTTTCAGCTTTA 58.475 36.000 0.00 0.00 40.40 1.85
3099 3879 6.311445 TGATCACTCTTTTCAGCTTTATCGTC 59.689 38.462 0.00 0.00 0.00 4.20
3156 3936 0.977395 GCACCTCCTTGTAGTCCAGT 59.023 55.000 0.00 0.00 0.00 4.00
3165 3945 3.525537 CTTGTAGTCCAGTTCGCATCAT 58.474 45.455 0.00 0.00 0.00 2.45
3171 3951 2.744202 GTCCAGTTCGCATCATGAAACT 59.256 45.455 0.00 1.65 0.00 2.66
3172 3952 3.002791 TCCAGTTCGCATCATGAAACTC 58.997 45.455 7.41 0.00 0.00 3.01
3173 3953 2.743664 CCAGTTCGCATCATGAAACTCA 59.256 45.455 7.41 0.00 0.00 3.41
3174 3954 3.181513 CCAGTTCGCATCATGAAACTCAG 60.182 47.826 7.41 0.48 0.00 3.35
3175 3955 3.005554 AGTTCGCATCATGAAACTCAGG 58.994 45.455 0.00 0.00 0.00 3.86
3176 3956 1.372582 TCGCATCATGAAACTCAGGC 58.627 50.000 0.00 0.00 0.00 4.85
3177 3957 1.089112 CGCATCATGAAACTCAGGCA 58.911 50.000 0.00 0.00 0.00 4.75
3178 3958 1.469703 CGCATCATGAAACTCAGGCAA 59.530 47.619 0.00 0.00 0.00 4.52
3179 3959 2.730090 CGCATCATGAAACTCAGGCAAC 60.730 50.000 0.00 0.00 0.00 4.17
3180 3960 2.229543 GCATCATGAAACTCAGGCAACA 59.770 45.455 0.00 0.00 41.41 3.33
3181 3961 3.829948 CATCATGAAACTCAGGCAACAC 58.170 45.455 0.00 0.00 41.41 3.32
3182 3962 2.229792 TCATGAAACTCAGGCAACACC 58.770 47.619 0.00 0.00 41.41 4.16
3183 3963 1.069022 CATGAAACTCAGGCAACACCG 60.069 52.381 0.00 0.00 46.52 4.94
3184 3964 0.179234 TGAAACTCAGGCAACACCGA 59.821 50.000 0.00 0.00 46.52 4.69
3185 3965 1.305201 GAAACTCAGGCAACACCGAA 58.695 50.000 0.00 0.00 46.52 4.30
3186 3966 1.673920 GAAACTCAGGCAACACCGAAA 59.326 47.619 0.00 0.00 46.52 3.46
3187 3967 1.757682 AACTCAGGCAACACCGAAAA 58.242 45.000 0.00 0.00 46.52 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.892425 CAGTCCCTTCGCATCCGC 60.892 66.667 0.00 0.00 0.00 5.54
10 11 2.202932 CCAGTCCCTTCGCATCCG 60.203 66.667 0.00 0.00 0.00 4.18
11 12 1.153349 GTCCAGTCCCTTCGCATCC 60.153 63.158 0.00 0.00 0.00 3.51
12 13 1.153349 GGTCCAGTCCCTTCGCATC 60.153 63.158 0.00 0.00 0.00 3.91
13 14 1.613630 AGGTCCAGTCCCTTCGCAT 60.614 57.895 0.00 0.00 0.00 4.73
14 15 2.203788 AGGTCCAGTCCCTTCGCA 60.204 61.111 0.00 0.00 0.00 5.10
15 16 2.266055 CAGGTCCAGTCCCTTCGC 59.734 66.667 0.00 0.00 0.00 4.70
16 17 2.660064 CCCAGGTCCAGTCCCTTCG 61.660 68.421 0.00 0.00 0.00 3.79
17 18 1.539124 ACCCAGGTCCAGTCCCTTC 60.539 63.158 0.00 0.00 0.00 3.46
18 19 1.847968 CACCCAGGTCCAGTCCCTT 60.848 63.158 0.00 0.00 0.00 3.95
19 20 2.203998 CACCCAGGTCCAGTCCCT 60.204 66.667 0.00 0.00 0.00 4.20
20 21 3.330720 CCACCCAGGTCCAGTCCC 61.331 72.222 0.00 0.00 0.00 4.46
31 32 4.542627 AACCCTCCCCACCACCCA 62.543 66.667 0.00 0.00 0.00 4.51
32 33 3.190391 AAACCCTCCCCACCACCC 61.190 66.667 0.00 0.00 0.00 4.61
33 34 2.117423 CAAACCCTCCCCACCACC 59.883 66.667 0.00 0.00 0.00 4.61
34 35 2.117423 CCAAACCCTCCCCACCAC 59.883 66.667 0.00 0.00 0.00 4.16
35 36 3.189646 CCCAAACCCTCCCCACCA 61.190 66.667 0.00 0.00 0.00 4.17
36 37 3.190391 ACCCAAACCCTCCCCACC 61.190 66.667 0.00 0.00 0.00 4.61
37 38 2.117423 CACCCAAACCCTCCCCAC 59.883 66.667 0.00 0.00 0.00 4.61
38 39 3.189646 CCACCCAAACCCTCCCCA 61.190 66.667 0.00 0.00 0.00 4.96
39 40 4.696805 GCCACCCAAACCCTCCCC 62.697 72.222 0.00 0.00 0.00 4.81
41 42 3.961414 TCGCCACCCAAACCCTCC 61.961 66.667 0.00 0.00 0.00 4.30
42 43 2.671963 GTCGCCACCCAAACCCTC 60.672 66.667 0.00 0.00 0.00 4.30
43 44 4.636435 CGTCGCCACCCAAACCCT 62.636 66.667 0.00 0.00 0.00 4.34
46 47 4.629523 TCCCGTCGCCACCCAAAC 62.630 66.667 0.00 0.00 0.00 2.93
47 48 3.835790 CTTCCCGTCGCCACCCAAA 62.836 63.158 0.00 0.00 0.00 3.28
48 49 4.323477 CTTCCCGTCGCCACCCAA 62.323 66.667 0.00 0.00 0.00 4.12
50 51 4.754667 GTCTTCCCGTCGCCACCC 62.755 72.222 0.00 0.00 0.00 4.61
54 55 4.060038 TTCCGTCTTCCCGTCGCC 62.060 66.667 0.00 0.00 0.00 5.54
55 56 2.808321 GTTCCGTCTTCCCGTCGC 60.808 66.667 0.00 0.00 0.00 5.19
56 57 1.443872 CAGTTCCGTCTTCCCGTCG 60.444 63.158 0.00 0.00 0.00 5.12
57 58 1.080025 CCAGTTCCGTCTTCCCGTC 60.080 63.158 0.00 0.00 0.00 4.79
58 59 1.813728 GACCAGTTCCGTCTTCCCGT 61.814 60.000 0.00 0.00 0.00 5.28
59 60 1.080025 GACCAGTTCCGTCTTCCCG 60.080 63.158 0.00 0.00 0.00 5.14
60 61 0.613777 ATGACCAGTTCCGTCTTCCC 59.386 55.000 0.00 0.00 0.00 3.97
61 62 1.736032 CGATGACCAGTTCCGTCTTCC 60.736 57.143 0.00 0.00 33.19 3.46
62 63 1.067776 ACGATGACCAGTTCCGTCTTC 60.068 52.381 0.00 0.00 33.35 2.87
63 64 0.966920 ACGATGACCAGTTCCGTCTT 59.033 50.000 0.00 0.00 0.00 3.01
64 65 0.526662 GACGATGACCAGTTCCGTCT 59.473 55.000 0.00 0.00 44.10 4.18
65 66 0.797249 CGACGATGACCAGTTCCGTC 60.797 60.000 0.00 0.00 44.06 4.79
66 67 1.211969 CGACGATGACCAGTTCCGT 59.788 57.895 0.00 0.00 36.08 4.69
67 68 1.516386 CCGACGATGACCAGTTCCG 60.516 63.158 0.00 0.00 0.00 4.30
68 69 0.458025 GTCCGACGATGACCAGTTCC 60.458 60.000 0.00 0.00 0.00 3.62
69 70 0.526662 AGTCCGACGATGACCAGTTC 59.473 55.000 0.00 0.00 33.09 3.01
70 71 0.526662 GAGTCCGACGATGACCAGTT 59.473 55.000 0.00 0.00 33.09 3.16
71 72 1.313812 GGAGTCCGACGATGACCAGT 61.314 60.000 0.00 0.00 33.09 4.00
72 73 1.433879 GGAGTCCGACGATGACCAG 59.566 63.158 0.00 0.00 33.09 4.00
73 74 3.599584 GGAGTCCGACGATGACCA 58.400 61.111 0.00 0.00 33.09 4.02
96 97 4.779733 TCTGTCTCCTCCCCCGGC 62.780 72.222 0.00 0.00 0.00 6.13
97 98 2.443016 CTCTGTCTCCTCCCCCGG 60.443 72.222 0.00 0.00 0.00 5.73
98 99 2.443016 CCTCTGTCTCCTCCCCCG 60.443 72.222 0.00 0.00 0.00 5.73
99 100 1.075600 CTCCTCTGTCTCCTCCCCC 60.076 68.421 0.00 0.00 0.00 5.40
100 101 1.075600 CCTCCTCTGTCTCCTCCCC 60.076 68.421 0.00 0.00 0.00 4.81
101 102 0.336737 TTCCTCCTCTGTCTCCTCCC 59.663 60.000 0.00 0.00 0.00 4.30
102 103 1.006639 ACTTCCTCCTCTGTCTCCTCC 59.993 57.143 0.00 0.00 0.00 4.30
103 104 2.099405 CACTTCCTCCTCTGTCTCCTC 58.901 57.143 0.00 0.00 0.00 3.71
104 105 1.894978 GCACTTCCTCCTCTGTCTCCT 60.895 57.143 0.00 0.00 0.00 3.69
105 106 0.534873 GCACTTCCTCCTCTGTCTCC 59.465 60.000 0.00 0.00 0.00 3.71
106 107 1.476488 GAGCACTTCCTCCTCTGTCTC 59.524 57.143 0.00 0.00 0.00 3.36
107 108 1.203112 TGAGCACTTCCTCCTCTGTCT 60.203 52.381 0.00 0.00 0.00 3.41
108 109 1.261480 TGAGCACTTCCTCCTCTGTC 58.739 55.000 0.00 0.00 0.00 3.51
109 110 1.554160 CATGAGCACTTCCTCCTCTGT 59.446 52.381 0.00 0.00 0.00 3.41
110 111 1.134461 CCATGAGCACTTCCTCCTCTG 60.134 57.143 0.00 0.00 0.00 3.35
111 112 1.202330 CCATGAGCACTTCCTCCTCT 58.798 55.000 0.00 0.00 0.00 3.69
112 113 0.463474 GCCATGAGCACTTCCTCCTC 60.463 60.000 0.00 0.00 42.97 3.71
113 114 1.606531 GCCATGAGCACTTCCTCCT 59.393 57.895 0.00 0.00 42.97 3.69
114 115 1.817099 CGCCATGAGCACTTCCTCC 60.817 63.158 0.00 0.00 44.04 4.30
115 116 1.817099 CCGCCATGAGCACTTCCTC 60.817 63.158 0.00 0.00 44.04 3.71
116 117 2.270205 CCGCCATGAGCACTTCCT 59.730 61.111 0.00 0.00 44.04 3.36
117 118 2.045926 ACCGCCATGAGCACTTCC 60.046 61.111 0.00 0.00 44.04 3.46
118 119 2.456119 CGACCGCCATGAGCACTTC 61.456 63.158 0.00 0.00 44.04 3.01
119 120 2.434884 CGACCGCCATGAGCACTT 60.435 61.111 0.00 0.00 44.04 3.16
120 121 3.695606 ACGACCGCCATGAGCACT 61.696 61.111 0.00 0.00 44.04 4.40
121 122 3.490759 CACGACCGCCATGAGCAC 61.491 66.667 0.00 0.00 44.04 4.40
122 123 4.758251 CCACGACCGCCATGAGCA 62.758 66.667 0.00 0.00 44.04 4.26
123 124 4.451150 TCCACGACCGCCATGAGC 62.451 66.667 0.00 0.00 38.52 4.26
124 125 2.202797 CTCCACGACCGCCATGAG 60.203 66.667 0.00 0.00 0.00 2.90
125 126 3.770040 CCTCCACGACCGCCATGA 61.770 66.667 0.00 0.00 0.00 3.07
126 127 3.094062 ATCCTCCACGACCGCCATG 62.094 63.158 0.00 0.00 0.00 3.66
127 128 2.764128 ATCCTCCACGACCGCCAT 60.764 61.111 0.00 0.00 0.00 4.40
128 129 3.770040 CATCCTCCACGACCGCCA 61.770 66.667 0.00 0.00 0.00 5.69
129 130 4.530857 CCATCCTCCACGACCGCC 62.531 72.222 0.00 0.00 0.00 6.13
130 131 4.530857 CCCATCCTCCACGACCGC 62.531 72.222 0.00 0.00 0.00 5.68
131 132 3.849951 CCCCATCCTCCACGACCG 61.850 72.222 0.00 0.00 0.00 4.79
132 133 2.365105 TCCCCATCCTCCACGACC 60.365 66.667 0.00 0.00 0.00 4.79
133 134 2.435693 CCTCCCCATCCTCCACGAC 61.436 68.421 0.00 0.00 0.00 4.34
134 135 2.041922 CCTCCCCATCCTCCACGA 60.042 66.667 0.00 0.00 0.00 4.35
135 136 2.041922 TCCTCCCCATCCTCCACG 60.042 66.667 0.00 0.00 0.00 4.94
136 137 0.762461 CTCTCCTCCCCATCCTCCAC 60.762 65.000 0.00 0.00 0.00 4.02
137 138 0.931250 TCTCTCCTCCCCATCCTCCA 60.931 60.000 0.00 0.00 0.00 3.86
138 139 0.178935 CTCTCTCCTCCCCATCCTCC 60.179 65.000 0.00 0.00 0.00 4.30
139 140 0.178935 CCTCTCTCCTCCCCATCCTC 60.179 65.000 0.00 0.00 0.00 3.71
140 141 0.631998 TCCTCTCTCCTCCCCATCCT 60.632 60.000 0.00 0.00 0.00 3.24
141 142 0.178935 CTCCTCTCTCCTCCCCATCC 60.179 65.000 0.00 0.00 0.00 3.51
142 143 0.831711 GCTCCTCTCTCCTCCCCATC 60.832 65.000 0.00 0.00 0.00 3.51
143 144 1.235696 GCTCCTCTCTCCTCCCCAT 59.764 63.158 0.00 0.00 0.00 4.00
144 145 2.235602 CTGCTCCTCTCTCCTCCCCA 62.236 65.000 0.00 0.00 0.00 4.96
145 146 1.457455 CTGCTCCTCTCTCCTCCCC 60.457 68.421 0.00 0.00 0.00 4.81
146 147 2.133641 GCTGCTCCTCTCTCCTCCC 61.134 68.421 0.00 0.00 0.00 4.30
147 148 2.489275 CGCTGCTCCTCTCTCCTCC 61.489 68.421 0.00 0.00 0.00 4.30
148 149 2.489275 CCGCTGCTCCTCTCTCCTC 61.489 68.421 0.00 0.00 0.00 3.71
149 150 2.441901 CCGCTGCTCCTCTCTCCT 60.442 66.667 0.00 0.00 0.00 3.69
150 151 2.015227 CTTCCGCTGCTCCTCTCTCC 62.015 65.000 0.00 0.00 0.00 3.71
151 152 1.034838 TCTTCCGCTGCTCCTCTCTC 61.035 60.000 0.00 0.00 0.00 3.20
152 153 0.396974 ATCTTCCGCTGCTCCTCTCT 60.397 55.000 0.00 0.00 0.00 3.10
153 154 0.249405 CATCTTCCGCTGCTCCTCTC 60.249 60.000 0.00 0.00 0.00 3.20
154 155 0.975040 ACATCTTCCGCTGCTCCTCT 60.975 55.000 0.00 0.00 0.00 3.69
155 156 0.809241 CACATCTTCCGCTGCTCCTC 60.809 60.000 0.00 0.00 0.00 3.71
156 157 1.220206 CACATCTTCCGCTGCTCCT 59.780 57.895 0.00 0.00 0.00 3.69
157 158 1.817099 CCACATCTTCCGCTGCTCC 60.817 63.158 0.00 0.00 0.00 4.70
158 159 0.179062 ATCCACATCTTCCGCTGCTC 60.179 55.000 0.00 0.00 0.00 4.26
159 160 0.179062 GATCCACATCTTCCGCTGCT 60.179 55.000 0.00 0.00 0.00 4.24
160 161 1.493950 CGATCCACATCTTCCGCTGC 61.494 60.000 0.00 0.00 0.00 5.25
161 162 0.179100 ACGATCCACATCTTCCGCTG 60.179 55.000 0.00 0.00 0.00 5.18
162 163 0.179100 CACGATCCACATCTTCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
163 164 0.179111 TCACGATCCACATCTTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
164 165 1.135139 ACTCACGATCCACATCTTCCG 59.865 52.381 0.00 0.00 0.00 4.30
165 166 2.969628 ACTCACGATCCACATCTTCC 57.030 50.000 0.00 0.00 0.00 3.46
166 167 3.849911 TGAACTCACGATCCACATCTTC 58.150 45.455 0.00 0.00 0.00 2.87
167 168 3.961480 TGAACTCACGATCCACATCTT 57.039 42.857 0.00 0.00 0.00 2.40
168 169 3.961480 TTGAACTCACGATCCACATCT 57.039 42.857 0.00 0.00 0.00 2.90
169 170 3.997021 AGTTTGAACTCACGATCCACATC 59.003 43.478 0.00 0.00 32.86 3.06
170 171 3.748048 CAGTTTGAACTCACGATCCACAT 59.252 43.478 0.00 0.00 37.08 3.21
171 172 3.130633 CAGTTTGAACTCACGATCCACA 58.869 45.455 0.00 0.00 37.08 4.17
172 173 3.390135 TCAGTTTGAACTCACGATCCAC 58.610 45.455 0.00 0.00 37.08 4.02
173 174 3.744238 TCAGTTTGAACTCACGATCCA 57.256 42.857 0.00 0.00 37.08 3.41
174 175 4.567159 GGTATCAGTTTGAACTCACGATCC 59.433 45.833 0.00 0.00 37.08 3.36
175 176 5.168569 TGGTATCAGTTTGAACTCACGATC 58.831 41.667 0.00 0.00 37.08 3.69
176 177 5.147330 TGGTATCAGTTTGAACTCACGAT 57.853 39.130 0.00 0.00 37.08 3.73
177 178 4.594123 TGGTATCAGTTTGAACTCACGA 57.406 40.909 0.00 0.00 37.08 4.35
178 179 4.690748 ACATGGTATCAGTTTGAACTCACG 59.309 41.667 0.00 0.00 37.08 4.35
179 180 6.373779 CAACATGGTATCAGTTTGAACTCAC 58.626 40.000 0.00 0.00 37.08 3.51
180 181 5.473162 CCAACATGGTATCAGTTTGAACTCA 59.527 40.000 0.00 0.00 32.48 3.41
181 182 5.705441 TCCAACATGGTATCAGTTTGAACTC 59.295 40.000 0.00 0.00 39.03 3.01
182 183 5.630121 TCCAACATGGTATCAGTTTGAACT 58.370 37.500 0.00 0.00 39.03 3.01
183 184 5.473504 ACTCCAACATGGTATCAGTTTGAAC 59.526 40.000 0.00 0.00 39.03 3.18
184 185 5.630121 ACTCCAACATGGTATCAGTTTGAA 58.370 37.500 0.00 0.00 39.03 2.69
185 186 5.013079 AGACTCCAACATGGTATCAGTTTGA 59.987 40.000 0.00 0.00 39.03 2.69
186 187 5.122869 CAGACTCCAACATGGTATCAGTTTG 59.877 44.000 0.00 0.00 39.03 2.93
187 188 5.013079 TCAGACTCCAACATGGTATCAGTTT 59.987 40.000 0.00 0.00 39.03 2.66
188 189 4.532126 TCAGACTCCAACATGGTATCAGTT 59.468 41.667 0.00 0.00 39.03 3.16
189 190 4.096681 TCAGACTCCAACATGGTATCAGT 58.903 43.478 0.00 0.00 39.03 3.41
190 191 4.743057 TCAGACTCCAACATGGTATCAG 57.257 45.455 0.00 0.00 39.03 2.90
191 192 4.620567 CGTTCAGACTCCAACATGGTATCA 60.621 45.833 0.00 0.00 39.03 2.15
192 193 3.865745 CGTTCAGACTCCAACATGGTATC 59.134 47.826 0.00 0.00 39.03 2.24
193 194 3.513912 TCGTTCAGACTCCAACATGGTAT 59.486 43.478 0.00 0.00 39.03 2.73
194 195 2.894765 TCGTTCAGACTCCAACATGGTA 59.105 45.455 0.00 0.00 39.03 3.25
195 196 1.691976 TCGTTCAGACTCCAACATGGT 59.308 47.619 0.00 0.00 39.03 3.55
196 197 2.341257 CTCGTTCAGACTCCAACATGG 58.659 52.381 0.00 0.00 39.43 3.66
197 198 2.341257 CCTCGTTCAGACTCCAACATG 58.659 52.381 0.00 0.00 0.00 3.21
198 199 1.276421 CCCTCGTTCAGACTCCAACAT 59.724 52.381 0.00 0.00 0.00 2.71
199 200 0.679505 CCCTCGTTCAGACTCCAACA 59.320 55.000 0.00 0.00 0.00 3.33
200 201 0.680061 ACCCTCGTTCAGACTCCAAC 59.320 55.000 0.00 0.00 0.00 3.77
201 202 2.297698 TACCCTCGTTCAGACTCCAA 57.702 50.000 0.00 0.00 0.00 3.53
202 203 2.376109 GATACCCTCGTTCAGACTCCA 58.624 52.381 0.00 0.00 0.00 3.86
203 204 1.334243 CGATACCCTCGTTCAGACTCC 59.666 57.143 0.00 0.00 42.56 3.85
204 205 2.759538 CGATACCCTCGTTCAGACTC 57.240 55.000 0.00 0.00 42.56 3.36
214 215 3.259064 CGATCTCTCTCTCGATACCCTC 58.741 54.545 0.00 0.00 37.05 4.30
215 216 2.635915 ACGATCTCTCTCTCGATACCCT 59.364 50.000 0.00 0.00 38.24 4.34
216 217 2.739913 CACGATCTCTCTCTCGATACCC 59.260 54.545 0.00 0.00 38.24 3.69
217 218 2.158841 GCACGATCTCTCTCTCGATACC 59.841 54.545 0.00 0.00 38.24 2.73
218 219 2.803386 TGCACGATCTCTCTCTCGATAC 59.197 50.000 0.00 0.00 38.24 2.24
219 220 3.113260 TGCACGATCTCTCTCTCGATA 57.887 47.619 0.00 0.00 38.24 2.92
220 221 1.960417 TGCACGATCTCTCTCTCGAT 58.040 50.000 0.00 0.00 38.24 3.59
221 222 1.398739 GTTGCACGATCTCTCTCTCGA 59.601 52.381 0.00 0.00 38.24 4.04
222 223 1.131315 TGTTGCACGATCTCTCTCTCG 59.869 52.381 0.00 0.00 40.62 4.04
223 224 2.163412 AGTGTTGCACGATCTCTCTCTC 59.837 50.000 0.00 0.00 39.64 3.20
224 225 2.166829 AGTGTTGCACGATCTCTCTCT 58.833 47.619 0.00 0.00 39.64 3.10
225 226 2.645730 AGTGTTGCACGATCTCTCTC 57.354 50.000 0.00 0.00 39.64 3.20
226 227 2.353208 GGAAGTGTTGCACGATCTCTCT 60.353 50.000 0.00 0.00 39.64 3.10
227 228 1.996191 GGAAGTGTTGCACGATCTCTC 59.004 52.381 0.00 0.00 39.64 3.20
228 229 1.620819 AGGAAGTGTTGCACGATCTCT 59.379 47.619 0.00 0.00 39.64 3.10
229 230 2.086054 AGGAAGTGTTGCACGATCTC 57.914 50.000 0.00 0.00 39.64 2.75
230 231 2.146342 CAAGGAAGTGTTGCACGATCT 58.854 47.619 0.00 0.00 39.64 2.75
231 232 2.143122 TCAAGGAAGTGTTGCACGATC 58.857 47.619 0.00 0.00 39.64 3.69
232 233 2.254546 TCAAGGAAGTGTTGCACGAT 57.745 45.000 0.00 0.00 39.64 3.73
233 234 2.254546 ATCAAGGAAGTGTTGCACGA 57.745 45.000 0.00 0.00 39.64 4.35
234 235 4.685169 ATAATCAAGGAAGTGTTGCACG 57.315 40.909 0.00 0.00 39.64 5.34
235 236 8.243426 TCAATTATAATCAAGGAAGTGTTGCAC 58.757 33.333 0.00 0.00 34.10 4.57
236 237 8.347004 TCAATTATAATCAAGGAAGTGTTGCA 57.653 30.769 0.00 0.00 0.00 4.08
237 238 7.917505 CCTCAATTATAATCAAGGAAGTGTTGC 59.082 37.037 16.09 0.00 0.00 4.17
238 239 8.960591 ACCTCAATTATAATCAAGGAAGTGTTG 58.039 33.333 23.33 6.81 0.00 3.33
239 240 9.533831 AACCTCAATTATAATCAAGGAAGTGTT 57.466 29.630 23.33 10.70 0.00 3.32
244 245 9.967451 TGTGTAACCTCAATTATAATCAAGGAA 57.033 29.630 23.33 13.22 34.36 3.36
249 250 9.679661 ACACATGTGTAACCTCAATTATAATCA 57.320 29.630 29.66 0.00 42.90 2.57
266 267 9.035890 ACAGCCAGTATATATATACACATGTGT 57.964 33.333 32.47 32.47 46.87 3.72
267 268 9.875691 AACAGCCAGTATATATATACACATGTG 57.124 33.333 27.07 24.25 40.70 3.21
282 283 9.326413 GTGTAATTCTATTGTAACAGCCAGTAT 57.674 33.333 0.00 0.00 0.00 2.12
283 284 7.767198 GGTGTAATTCTATTGTAACAGCCAGTA 59.233 37.037 0.00 0.00 31.10 2.74
284 285 6.598064 GGTGTAATTCTATTGTAACAGCCAGT 59.402 38.462 0.00 0.00 31.10 4.00
285 286 6.597672 TGGTGTAATTCTATTGTAACAGCCAG 59.402 38.462 0.00 0.00 35.16 4.85
286 287 6.477253 TGGTGTAATTCTATTGTAACAGCCA 58.523 36.000 0.00 0.00 35.16 4.75
287 288 6.598064 ACTGGTGTAATTCTATTGTAACAGCC 59.402 38.462 0.00 0.00 35.16 4.85
288 289 7.549488 AGACTGGTGTAATTCTATTGTAACAGC 59.451 37.037 0.00 0.00 36.25 4.40
291 292 9.032420 GCTAGACTGGTGTAATTCTATTGTAAC 57.968 37.037 0.00 0.00 0.00 2.50
292 293 8.202137 GGCTAGACTGGTGTAATTCTATTGTAA 58.798 37.037 0.00 0.00 0.00 2.41
293 294 7.563924 AGGCTAGACTGGTGTAATTCTATTGTA 59.436 37.037 0.00 0.00 0.00 2.41
294 295 6.384305 AGGCTAGACTGGTGTAATTCTATTGT 59.616 38.462 0.00 0.00 0.00 2.71
295 296 6.821388 AGGCTAGACTGGTGTAATTCTATTG 58.179 40.000 0.00 0.00 0.00 1.90
296 297 8.548880 TTAGGCTAGACTGGTGTAATTCTATT 57.451 34.615 8.90 0.00 0.00 1.73
297 298 7.233757 CCTTAGGCTAGACTGGTGTAATTCTAT 59.766 40.741 8.90 0.00 0.00 1.98
298 299 6.550108 CCTTAGGCTAGACTGGTGTAATTCTA 59.450 42.308 8.90 0.00 0.00 2.10
299 300 5.364157 CCTTAGGCTAGACTGGTGTAATTCT 59.636 44.000 8.90 0.00 0.00 2.40
300 301 5.363005 TCCTTAGGCTAGACTGGTGTAATTC 59.637 44.000 8.90 0.00 0.00 2.17
301 302 5.278061 TCCTTAGGCTAGACTGGTGTAATT 58.722 41.667 8.90 0.00 0.00 1.40
302 303 4.880164 TCCTTAGGCTAGACTGGTGTAAT 58.120 43.478 8.90 0.00 0.00 1.89
303 304 4.326600 TCCTTAGGCTAGACTGGTGTAA 57.673 45.455 8.90 0.00 0.00 2.41
304 305 4.326600 TTCCTTAGGCTAGACTGGTGTA 57.673 45.455 8.90 0.00 0.00 2.90
305 306 2.921834 TCCTTAGGCTAGACTGGTGT 57.078 50.000 8.90 0.00 0.00 4.16
306 307 5.141182 TCTATTCCTTAGGCTAGACTGGTG 58.859 45.833 8.90 0.00 0.00 4.17
307 308 5.405063 TCTATTCCTTAGGCTAGACTGGT 57.595 43.478 8.90 0.00 0.00 4.00
308 309 5.011227 GGTTCTATTCCTTAGGCTAGACTGG 59.989 48.000 8.90 1.13 0.00 4.00
309 310 5.598830 TGGTTCTATTCCTTAGGCTAGACTG 59.401 44.000 8.90 0.00 0.00 3.51
310 311 5.599242 GTGGTTCTATTCCTTAGGCTAGACT 59.401 44.000 2.16 2.16 0.00 3.24
311 312 5.599242 AGTGGTTCTATTCCTTAGGCTAGAC 59.401 44.000 9.07 0.00 0.00 2.59
312 313 5.778542 AGTGGTTCTATTCCTTAGGCTAGA 58.221 41.667 0.00 0.00 0.00 2.43
313 314 6.550108 TGTAGTGGTTCTATTCCTTAGGCTAG 59.450 42.308 0.00 0.00 0.00 3.42
314 315 6.437755 TGTAGTGGTTCTATTCCTTAGGCTA 58.562 40.000 0.00 0.00 0.00 3.93
315 316 5.278061 TGTAGTGGTTCTATTCCTTAGGCT 58.722 41.667 0.00 0.00 0.00 4.58
316 317 5.609533 TGTAGTGGTTCTATTCCTTAGGC 57.390 43.478 0.00 0.00 0.00 3.93
317 318 7.873505 GCTTATGTAGTGGTTCTATTCCTTAGG 59.126 40.741 0.00 0.00 0.00 2.69
318 319 8.421784 TGCTTATGTAGTGGTTCTATTCCTTAG 58.578 37.037 0.00 0.00 0.00 2.18
319 320 8.202137 GTGCTTATGTAGTGGTTCTATTCCTTA 58.798 37.037 0.00 0.00 0.00 2.69
320 321 7.048512 GTGCTTATGTAGTGGTTCTATTCCTT 58.951 38.462 0.00 0.00 0.00 3.36
321 322 6.583562 GTGCTTATGTAGTGGTTCTATTCCT 58.416 40.000 0.00 0.00 0.00 3.36
322 323 5.462398 CGTGCTTATGTAGTGGTTCTATTCC 59.538 44.000 0.00 0.00 0.00 3.01
323 324 6.040878 ACGTGCTTATGTAGTGGTTCTATTC 58.959 40.000 0.00 0.00 0.00 1.75
324 325 5.974108 ACGTGCTTATGTAGTGGTTCTATT 58.026 37.500 0.00 0.00 0.00 1.73
325 326 5.593679 ACGTGCTTATGTAGTGGTTCTAT 57.406 39.130 0.00 0.00 0.00 1.98
326 327 5.395682 AACGTGCTTATGTAGTGGTTCTA 57.604 39.130 0.00 0.00 0.00 2.10
327 328 3.955650 ACGTGCTTATGTAGTGGTTCT 57.044 42.857 0.00 0.00 0.00 3.01
328 329 3.060363 CGAACGTGCTTATGTAGTGGTTC 59.940 47.826 0.00 0.00 0.00 3.62
329 330 2.991190 CGAACGTGCTTATGTAGTGGTT 59.009 45.455 0.00 0.00 0.00 3.67
330 331 2.602878 CGAACGTGCTTATGTAGTGGT 58.397 47.619 0.00 0.00 0.00 4.16
331 332 1.323534 GCGAACGTGCTTATGTAGTGG 59.676 52.381 0.00 0.00 0.00 4.00
332 333 2.259618 AGCGAACGTGCTTATGTAGTG 58.740 47.619 0.00 0.00 44.46 2.74
333 334 2.649331 AGCGAACGTGCTTATGTAGT 57.351 45.000 0.00 0.00 44.46 2.73
334 335 2.468040 GCTAGCGAACGTGCTTATGTAG 59.532 50.000 5.64 0.00 44.46 2.74
335 336 2.159352 TGCTAGCGAACGTGCTTATGTA 60.159 45.455 10.77 0.00 44.46 2.29
336 337 1.278238 GCTAGCGAACGTGCTTATGT 58.722 50.000 5.64 0.00 44.46 2.29
337 338 1.277326 TGCTAGCGAACGTGCTTATG 58.723 50.000 10.77 0.00 44.46 1.90
338 339 1.659098 GTTGCTAGCGAACGTGCTTAT 59.341 47.619 6.14 0.00 44.46 1.73
339 340 1.065358 GTTGCTAGCGAACGTGCTTA 58.935 50.000 6.14 0.00 44.46 3.09
340 341 1.860078 GTTGCTAGCGAACGTGCTT 59.140 52.632 6.14 0.00 44.46 3.91
342 343 2.093983 CGTTGCTAGCGAACGTGC 59.906 61.111 28.64 10.55 41.00 5.34
346 347 1.000233 TGTCGACGTTGCTAGCGAAC 61.000 55.000 11.62 12.36 34.29 3.95
347 348 1.000233 GTGTCGACGTTGCTAGCGAA 61.000 55.000 11.62 0.58 34.29 4.70
348 349 1.441515 GTGTCGACGTTGCTAGCGA 60.442 57.895 11.62 5.12 0.00 4.93
349 350 2.434134 GGTGTCGACGTTGCTAGCG 61.434 63.158 11.62 0.00 0.00 4.26
350 351 1.071567 GAGGTGTCGACGTTGCTAGC 61.072 60.000 11.62 8.10 0.00 3.42
351 352 3.017232 GAGGTGTCGACGTTGCTAG 57.983 57.895 11.62 0.00 0.00 3.42
405 406 0.473326 ATTTTGCAAAGGCCAGGCAA 59.527 45.000 20.49 20.49 44.97 4.52
462 463 2.231235 ACTTCAATTCAAATCGCCACCC 59.769 45.455 0.00 0.00 0.00 4.61
623 624 2.601666 TCAGGTCTGCCGTCTGCT 60.602 61.111 0.00 0.00 42.00 4.24
768 774 4.923893 TGTGGCAGTGTATACATACGTAC 58.076 43.478 9.18 7.13 36.06 3.67
793 801 1.000385 CGGTCAATGCTGGCTGAAAAA 60.000 47.619 0.00 0.00 35.36 1.94
891 899 3.358932 ATGGATGGCCCGGGTGAAC 62.359 63.158 24.63 11.00 37.93 3.18
1173 1182 2.125512 GTGGCGCGGACAAGATCT 60.126 61.111 8.83 0.00 0.00 2.75
1248 1257 4.711949 CCGCTGCTCAGTTGGCCT 62.712 66.667 3.32 0.00 0.00 5.19
1314 1323 2.225019 ACATTCTGCGTCAAAGCTCTTG 59.775 45.455 0.00 0.00 38.13 3.02
1493 1502 2.014068 GCAGAGCGGCTAACCTTTCAT 61.014 52.381 0.60 0.00 0.00 2.57
1497 1506 1.219393 GAGCAGAGCGGCTAACCTT 59.781 57.895 0.60 0.00 45.99 3.50
1505 1514 1.369448 GATACGTCGAGCAGAGCGG 60.369 63.158 0.00 0.00 0.00 5.52
1510 1519 0.855349 GCCATTGATACGTCGAGCAG 59.145 55.000 0.00 0.00 0.00 4.24
1692 1702 4.578928 GGTGACATGTATCCAATTGTACCC 59.421 45.833 0.00 0.00 0.00 3.69
1793 2458 6.551385 ACTCTACACAAGCAAAAGATGAAG 57.449 37.500 0.00 0.00 0.00 3.02
1935 2600 0.035439 ACTGGTAAACCCATCGCCTG 60.035 55.000 0.00 0.00 44.15 4.85
1962 2627 1.579964 CGACATGGCTCAGCTTTGCA 61.580 55.000 0.00 0.00 0.00 4.08
1966 2631 0.035317 TCAACGACATGGCTCAGCTT 59.965 50.000 0.00 0.00 0.00 3.74
1973 2638 2.800736 GGGCATCAACGACATGGC 59.199 61.111 0.00 9.84 44.23 4.40
2028 2693 1.667830 CGGCAGAAGAAAGTCGCCA 60.668 57.895 0.00 0.00 43.13 5.69
2031 2696 2.295253 ATACCGGCAGAAGAAAGTCG 57.705 50.000 0.00 0.00 0.00 4.18
2032 2697 2.678336 CCAATACCGGCAGAAGAAAGTC 59.322 50.000 0.00 0.00 0.00 3.01
2082 2747 5.788450 CTCATCTTTATCCTATCGCAAGGT 58.212 41.667 3.21 0.00 37.91 3.50
2155 2820 1.964223 ACTCTGTGATGTCTCCGTTGT 59.036 47.619 0.00 0.00 0.00 3.32
2160 2825 2.072298 GTTGCACTCTGTGATGTCTCC 58.928 52.381 1.52 0.00 35.23 3.71
2182 2847 4.569564 CGAAGCAAGAGTGATCAATCATGA 59.430 41.667 27.00 0.00 39.30 3.07
2239 2904 5.875910 TGGTAAGACAACGGGTAATACAATG 59.124 40.000 0.00 0.00 0.00 2.82
2242 2907 5.480642 TTGGTAAGACAACGGGTAATACA 57.519 39.130 0.00 0.00 0.00 2.29
2254 2921 8.284945 ACTAGTATACGTCAATTGGTAAGACA 57.715 34.615 5.42 0.00 32.68 3.41
2267 2935 4.781071 CGGGTTGATGACTAGTATACGTC 58.219 47.826 0.00 0.77 0.00 4.34
2268 2936 3.004106 GCGGGTTGATGACTAGTATACGT 59.996 47.826 0.00 0.00 0.00 3.57
2269 2937 3.004002 TGCGGGTTGATGACTAGTATACG 59.996 47.826 0.00 0.00 0.00 3.06
2290 2958 2.586079 CTAGCCCGTGCGGATGTG 60.586 66.667 12.71 0.00 44.33 3.21
2291 2959 3.075005 ACTAGCCCGTGCGGATGT 61.075 61.111 12.71 2.54 44.33 3.06
2293 2961 1.686325 AATCACTAGCCCGTGCGGAT 61.686 55.000 12.71 3.00 44.33 4.18
2320 2988 4.053295 TCTTCCGTTTCCTTACTTTCGTG 58.947 43.478 0.00 0.00 0.00 4.35
2321 2989 4.326504 TCTTCCGTTTCCTTACTTTCGT 57.673 40.909 0.00 0.00 0.00 3.85
2370 3041 4.092821 CCTTCGAAGTTCGCATACATTTCA 59.907 41.667 23.03 0.00 40.21 2.69
2388 3059 3.181510 CGGTTAGGAGAAAATTGCCTTCG 60.182 47.826 0.00 0.00 33.28 3.79
2502 3174 4.464008 TCTATTGGGCATGTGATTCCTTC 58.536 43.478 0.00 0.00 0.00 3.46
2543 3215 3.307691 GGTTCCAGTTCTGATGACCATGA 60.308 47.826 0.00 0.00 0.00 3.07
2550 3222 7.106239 ACACTAATTAGGTTCCAGTTCTGATG 58.894 38.462 16.73 3.43 0.00 3.07
2593 3265 9.547753 GCTAGATTCAATGTTTCCTTCTATACA 57.452 33.333 0.00 0.00 0.00 2.29
2616 3288 8.635328 TGTCCTTCGTCTATAATAACAATGCTA 58.365 33.333 0.00 0.00 0.00 3.49
2642 3314 9.739276 TGAAGAGGAACAAGTACATTATTTGAT 57.261 29.630 0.00 0.00 0.00 2.57
2774 3452 9.640963 GCGGAAACATAGATATTTATACTGAGT 57.359 33.333 0.00 0.00 0.00 3.41
2775 3453 9.639601 TGCGGAAACATAGATATTTATACTGAG 57.360 33.333 0.00 0.00 0.00 3.35
2776 3454 9.990360 TTGCGGAAACATAGATATTTATACTGA 57.010 29.630 0.00 0.00 0.00 3.41
2807 3495 2.183679 TCCACAAGCCAAAACACCTTT 58.816 42.857 0.00 0.00 0.00 3.11
2808 3496 1.859302 TCCACAAGCCAAAACACCTT 58.141 45.000 0.00 0.00 0.00 3.50
2866 3555 8.057246 ACAATTAATATGGATGGTAGGGAGTT 57.943 34.615 0.00 0.00 0.00 3.01
2952 3641 9.358872 CTTTTTGCATTTTTAATACTCTCTCCC 57.641 33.333 0.00 0.00 0.00 4.30
2991 3680 8.856153 TTTTTAGCATAACAACCTCATCACTA 57.144 30.769 0.00 0.00 0.00 2.74
3039 3819 4.788201 GCACTCTGTGATGTCTCTATCGTC 60.788 50.000 1.52 0.00 35.23 4.20
3042 3822 4.645762 TGCACTCTGTGATGTCTCTATC 57.354 45.455 1.52 0.00 35.23 2.08
3044 3824 3.573967 TGTTGCACTCTGTGATGTCTCTA 59.426 43.478 1.52 0.00 35.23 2.43
3085 3865 3.176708 GCACTACGACGATAAAGCTGAA 58.823 45.455 0.00 0.00 0.00 3.02
3086 3866 2.479049 GGCACTACGACGATAAAGCTGA 60.479 50.000 0.00 0.00 0.00 4.26
3135 3915 0.472925 TGGACTACAAGGAGGTGCCA 60.473 55.000 0.00 0.00 40.02 4.92
3137 3917 0.977395 ACTGGACTACAAGGAGGTGC 59.023 55.000 0.00 0.00 0.00 5.01
3156 3936 1.739466 GCCTGAGTTTCATGATGCGAA 59.261 47.619 0.00 0.00 0.00 4.70
3165 3945 0.179234 TCGGTGTTGCCTGAGTTTCA 59.821 50.000 0.00 0.00 34.25 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.