Multiple sequence alignment - TraesCS5B01G067700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G067700 chr5B 100.000 3062 0 0 1 3062 75812968 75809907 0.000000e+00 5655.0
1 TraesCS5B01G067700 chr5B 84.528 1060 109 28 963 1989 552564041 552565078 0.000000e+00 998.0
2 TraesCS5B01G067700 chr5B 89.714 350 19 8 2363 2708 670532330 670531994 6.070000e-117 431.0
3 TraesCS5B01G067700 chr5B 78.261 276 52 7 362 632 690646907 690647179 1.460000e-38 171.0
4 TraesCS5B01G067700 chr5A 92.652 1674 71 18 716 2363 60414712 60413065 0.000000e+00 2362.0
5 TraesCS5B01G067700 chr5A 83.835 1064 110 31 963 1989 571304373 571305411 0.000000e+00 955.0
6 TraesCS5B01G067700 chr5A 85.526 76 9 2 542 615 52263944 52264019 9.100000e-11 78.7
7 TraesCS5B01G067700 chr5A 83.529 85 10 3 423 504 378264524 378264607 3.270000e-10 76.8
8 TraesCS5B01G067700 chr5D 94.952 1466 42 6 918 2363 70521771 70520318 0.000000e+00 2268.0
9 TraesCS5B01G067700 chr5D 84.731 1061 106 27 964 1989 452364346 452365385 0.000000e+00 1011.0
10 TraesCS5B01G067700 chr5D 87.624 202 23 2 726 927 70521998 70521799 1.840000e-57 233.0
11 TraesCS5B01G067700 chr6D 93.182 704 24 9 2364 3062 352160192 352159508 0.000000e+00 1013.0
12 TraesCS5B01G067700 chr6D 92.776 706 27 9 2363 3062 6934873 6935560 0.000000e+00 1000.0
13 TraesCS5B01G067700 chr6D 92.635 706 26 11 2364 3062 16125821 16126507 0.000000e+00 992.0
14 TraesCS5B01G067700 chr6D 91.938 707 27 14 2364 3062 16133548 16134232 0.000000e+00 963.0
15 TraesCS5B01G067700 chr6D 81.781 247 36 8 22 261 68683644 68683400 6.700000e-47 198.0
16 TraesCS5B01G067700 chr3B 92.776 706 35 10 2361 3060 18965315 18964620 0.000000e+00 1007.0
17 TraesCS5B01G067700 chr3B 74.267 307 55 15 333 634 40398825 40398538 1.160000e-19 108.0
18 TraesCS5B01G067700 chr3B 88.889 54 5 1 262 315 174785797 174785849 7.090000e-07 65.8
19 TraesCS5B01G067700 chr1D 92.437 714 27 10 2358 3062 17418025 17417330 0.000000e+00 994.0
20 TraesCS5B01G067700 chr1D 90.392 739 35 17 2356 3062 421462544 421461810 0.000000e+00 939.0
21 TraesCS5B01G067700 chr3D 91.102 708 28 12 2361 3062 548629775 548630453 0.000000e+00 926.0
22 TraesCS5B01G067700 chrUn 91.153 633 37 8 2366 2991 35118715 35119335 0.000000e+00 841.0
23 TraesCS5B01G067700 chr7A 89.815 648 37 10 2364 3005 30631867 30631243 0.000000e+00 804.0
24 TraesCS5B01G067700 chr3A 86.913 703 46 18 2363 3062 679666884 679666225 0.000000e+00 747.0
25 TraesCS5B01G067700 chr6B 80.503 318 45 13 322 631 715815595 715815903 8.540000e-56 228.0
26 TraesCS5B01G067700 chr4A 79.592 245 33 6 312 552 689854786 689854555 3.160000e-35 159.0
27 TraesCS5B01G067700 chr1A 77.174 276 55 7 362 631 590838365 590838638 1.470000e-33 154.0
28 TraesCS5B01G067700 chr2D 88.298 94 11 0 1233 1326 543429959 543429866 2.500000e-21 113.0
29 TraesCS5B01G067700 chr2D 80.451 133 17 9 367 495 179130578 179130705 3.250000e-15 93.5
30 TraesCS5B01G067700 chr2A 88.298 94 11 0 1233 1326 686215222 686215129 2.500000e-21 113.0
31 TraesCS5B01G067700 chr1B 81.739 115 15 5 383 494 24559960 24559849 1.170000e-14 91.6
32 TraesCS5B01G067700 chr7D 78.641 103 19 2 375 475 509064690 509064791 7.090000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G067700 chr5B 75809907 75812968 3061 True 5655.0 5655 100.000 1 3062 1 chr5B.!!$R1 3061
1 TraesCS5B01G067700 chr5B 552564041 552565078 1037 False 998.0 998 84.528 963 1989 1 chr5B.!!$F1 1026
2 TraesCS5B01G067700 chr5A 60413065 60414712 1647 True 2362.0 2362 92.652 716 2363 1 chr5A.!!$R1 1647
3 TraesCS5B01G067700 chr5A 571304373 571305411 1038 False 955.0 955 83.835 963 1989 1 chr5A.!!$F3 1026
4 TraesCS5B01G067700 chr5D 70520318 70521998 1680 True 1250.5 2268 91.288 726 2363 2 chr5D.!!$R1 1637
5 TraesCS5B01G067700 chr5D 452364346 452365385 1039 False 1011.0 1011 84.731 964 1989 1 chr5D.!!$F1 1025
6 TraesCS5B01G067700 chr6D 352159508 352160192 684 True 1013.0 1013 93.182 2364 3062 1 chr6D.!!$R2 698
7 TraesCS5B01G067700 chr6D 6934873 6935560 687 False 1000.0 1000 92.776 2363 3062 1 chr6D.!!$F1 699
8 TraesCS5B01G067700 chr6D 16125821 16126507 686 False 992.0 992 92.635 2364 3062 1 chr6D.!!$F2 698
9 TraesCS5B01G067700 chr6D 16133548 16134232 684 False 963.0 963 91.938 2364 3062 1 chr6D.!!$F3 698
10 TraesCS5B01G067700 chr3B 18964620 18965315 695 True 1007.0 1007 92.776 2361 3060 1 chr3B.!!$R1 699
11 TraesCS5B01G067700 chr1D 17417330 17418025 695 True 994.0 994 92.437 2358 3062 1 chr1D.!!$R1 704
12 TraesCS5B01G067700 chr1D 421461810 421462544 734 True 939.0 939 90.392 2356 3062 1 chr1D.!!$R2 706
13 TraesCS5B01G067700 chr3D 548629775 548630453 678 False 926.0 926 91.102 2361 3062 1 chr3D.!!$F1 701
14 TraesCS5B01G067700 chrUn 35118715 35119335 620 False 841.0 841 91.153 2366 2991 1 chrUn.!!$F1 625
15 TraesCS5B01G067700 chr7A 30631243 30631867 624 True 804.0 804 89.815 2364 3005 1 chr7A.!!$R1 641
16 TraesCS5B01G067700 chr3A 679666225 679666884 659 True 747.0 747 86.913 2363 3062 1 chr3A.!!$R1 699

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
699 700 0.034089 AGGGTACAAATGAGCCTGGC 60.034 55.0 11.65 11.65 43.2 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2208 1.152777 TCCAACACCAAGGCTGTGG 60.153 57.895 9.48 11.01 44.92 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.228017 TCCCCGACAGCGACAACA 61.228 61.111 0.00 0.00 40.82 3.33
18 19 2.280524 CCCCGACAGCGACAACAA 60.281 61.111 0.00 0.00 40.82 2.83
19 20 1.671054 CCCCGACAGCGACAACAAT 60.671 57.895 0.00 0.00 40.82 2.71
20 21 1.497278 CCCGACAGCGACAACAATG 59.503 57.895 0.00 0.00 40.82 2.82
21 22 0.948623 CCCGACAGCGACAACAATGA 60.949 55.000 0.00 0.00 40.82 2.57
22 23 0.163788 CCGACAGCGACAACAATGAC 59.836 55.000 0.00 0.00 40.82 3.06
23 24 0.858583 CGACAGCGACAACAATGACA 59.141 50.000 0.00 0.00 40.82 3.58
24 25 1.397190 CGACAGCGACAACAATGACAC 60.397 52.381 0.00 0.00 40.82 3.67
25 26 1.597195 GACAGCGACAACAATGACACA 59.403 47.619 0.00 0.00 0.00 3.72
26 27 2.221169 ACAGCGACAACAATGACACAT 58.779 42.857 0.00 0.00 0.00 3.21
27 28 2.031769 ACAGCGACAACAATGACACATG 60.032 45.455 0.00 0.00 0.00 3.21
28 29 1.536766 AGCGACAACAATGACACATGG 59.463 47.619 0.00 0.00 0.00 3.66
29 30 1.967762 CGACAACAATGACACATGGC 58.032 50.000 0.00 0.00 0.00 4.40
30 31 1.401409 CGACAACAATGACACATGGCC 60.401 52.381 0.00 0.00 0.00 5.36
31 32 1.888512 GACAACAATGACACATGGCCT 59.111 47.619 3.32 0.00 0.00 5.19
32 33 1.614903 ACAACAATGACACATGGCCTG 59.385 47.619 3.32 2.01 0.00 4.85
33 34 1.887854 CAACAATGACACATGGCCTGA 59.112 47.619 3.32 0.00 0.00 3.86
34 35 1.538047 ACAATGACACATGGCCTGAC 58.462 50.000 3.32 0.00 0.00 3.51
35 36 0.813184 CAATGACACATGGCCTGACC 59.187 55.000 3.32 0.00 39.84 4.02
36 37 0.323725 AATGACACATGGCCTGACCC 60.324 55.000 3.32 0.00 37.83 4.46
37 38 2.044946 GACACATGGCCTGACCCC 60.045 66.667 3.32 0.00 37.83 4.95
38 39 2.858476 ACACATGGCCTGACCCCA 60.858 61.111 3.32 0.00 37.83 4.96
39 40 2.215451 GACACATGGCCTGACCCCAT 62.215 60.000 3.32 0.00 43.70 4.00
54 55 3.520862 CATGGGCGGTGGCATGTC 61.521 66.667 0.00 0.00 42.47 3.06
55 56 3.731728 ATGGGCGGTGGCATGTCT 61.732 61.111 0.00 0.00 42.47 3.41
56 57 2.374525 ATGGGCGGTGGCATGTCTA 61.375 57.895 0.00 0.00 42.47 2.59
57 58 2.203070 GGGCGGTGGCATGTCTAG 60.203 66.667 0.00 0.00 42.47 2.43
58 59 2.203070 GGCGGTGGCATGTCTAGG 60.203 66.667 0.00 0.00 42.47 3.02
59 60 2.203070 GCGGTGGCATGTCTAGGG 60.203 66.667 0.00 0.00 39.62 3.53
60 61 2.203070 CGGTGGCATGTCTAGGGC 60.203 66.667 0.00 0.00 0.00 5.19
61 62 2.998097 GGTGGCATGTCTAGGGCA 59.002 61.111 0.00 0.00 41.05 5.36
62 63 1.302949 GGTGGCATGTCTAGGGCAA 59.697 57.895 0.00 0.00 44.90 4.52
63 64 0.323360 GGTGGCATGTCTAGGGCAAA 60.323 55.000 0.00 0.00 44.90 3.68
64 65 0.811281 GTGGCATGTCTAGGGCAAAC 59.189 55.000 0.00 0.00 44.90 2.93
65 66 0.403655 TGGCATGTCTAGGGCAAACA 59.596 50.000 0.00 0.00 40.34 2.83
66 67 1.098050 GGCATGTCTAGGGCAAACAG 58.902 55.000 0.00 0.00 32.87 3.16
67 68 1.098050 GCATGTCTAGGGCAAACAGG 58.902 55.000 0.00 0.00 0.00 4.00
68 69 1.614317 GCATGTCTAGGGCAAACAGGT 60.614 52.381 0.00 0.00 0.00 4.00
69 70 2.795329 CATGTCTAGGGCAAACAGGTT 58.205 47.619 0.00 0.00 0.00 3.50
70 71 2.270352 TGTCTAGGGCAAACAGGTTG 57.730 50.000 0.00 0.00 40.50 3.77
71 72 1.493022 TGTCTAGGGCAAACAGGTTGT 59.507 47.619 0.00 0.00 39.63 3.32
72 73 2.152016 GTCTAGGGCAAACAGGTTGTC 58.848 52.381 0.00 0.00 41.41 3.18
76 77 2.341452 GGCAAACAGGTTGTCCCTC 58.659 57.895 0.00 0.00 43.86 4.30
77 78 1.515521 GGCAAACAGGTTGTCCCTCG 61.516 60.000 0.00 0.00 43.86 4.63
78 79 1.949257 CAAACAGGTTGTCCCTCGC 59.051 57.895 0.00 0.00 43.86 5.03
79 80 0.817634 CAAACAGGTTGTCCCTCGCA 60.818 55.000 0.00 0.00 43.86 5.10
80 81 0.535102 AAACAGGTTGTCCCTCGCAG 60.535 55.000 0.00 0.00 43.86 5.18
81 82 1.696097 AACAGGTTGTCCCTCGCAGT 61.696 55.000 0.00 0.00 43.86 4.40
82 83 1.374758 CAGGTTGTCCCTCGCAGTC 60.375 63.158 0.00 0.00 43.86 3.51
83 84 2.432628 GGTTGTCCCTCGCAGTCG 60.433 66.667 0.00 0.00 0.00 4.18
84 85 2.432628 GTTGTCCCTCGCAGTCGG 60.433 66.667 0.00 0.00 36.13 4.79
85 86 2.599281 TTGTCCCTCGCAGTCGGA 60.599 61.111 0.00 0.00 36.13 4.55
86 87 2.204461 TTGTCCCTCGCAGTCGGAA 61.204 57.895 0.00 0.00 36.13 4.30
87 88 1.750341 TTGTCCCTCGCAGTCGGAAA 61.750 55.000 0.00 0.00 36.13 3.13
88 89 1.446272 GTCCCTCGCAGTCGGAAAG 60.446 63.158 0.00 0.00 36.13 2.62
89 90 2.815647 CCCTCGCAGTCGGAAAGC 60.816 66.667 0.00 0.00 36.13 3.51
90 91 2.048222 CCTCGCAGTCGGAAAGCA 60.048 61.111 4.19 0.00 36.13 3.91
91 92 1.667830 CCTCGCAGTCGGAAAGCAA 60.668 57.895 4.19 0.00 36.13 3.91
92 93 1.493311 CTCGCAGTCGGAAAGCAAC 59.507 57.895 4.19 0.00 36.13 4.17
93 94 0.946221 CTCGCAGTCGGAAAGCAACT 60.946 55.000 4.19 0.00 36.13 3.16
94 95 0.315886 TCGCAGTCGGAAAGCAACTA 59.684 50.000 4.19 0.00 36.13 2.24
95 96 1.144969 CGCAGTCGGAAAGCAACTAA 58.855 50.000 4.19 0.00 0.00 2.24
96 97 1.529438 CGCAGTCGGAAAGCAACTAAA 59.471 47.619 4.19 0.00 0.00 1.85
97 98 2.661979 CGCAGTCGGAAAGCAACTAAAC 60.662 50.000 4.19 0.00 0.00 2.01
98 99 2.548480 GCAGTCGGAAAGCAACTAAACT 59.452 45.455 0.00 0.00 0.00 2.66
99 100 3.003378 GCAGTCGGAAAGCAACTAAACTT 59.997 43.478 0.00 0.00 0.00 2.66
100 101 4.773510 CAGTCGGAAAGCAACTAAACTTC 58.226 43.478 0.00 0.00 0.00 3.01
101 102 3.813724 AGTCGGAAAGCAACTAAACTTCC 59.186 43.478 0.00 0.00 0.00 3.46
102 103 3.562557 GTCGGAAAGCAACTAAACTTCCA 59.437 43.478 0.00 0.00 0.00 3.53
103 104 3.813166 TCGGAAAGCAACTAAACTTCCAG 59.187 43.478 0.00 0.00 0.00 3.86
104 105 3.564225 CGGAAAGCAACTAAACTTCCAGT 59.436 43.478 0.00 0.00 0.00 4.00
105 106 4.036380 CGGAAAGCAACTAAACTTCCAGTT 59.964 41.667 0.00 0.00 40.80 3.16
106 107 5.237779 CGGAAAGCAACTAAACTTCCAGTTA 59.762 40.000 0.00 0.00 37.47 2.24
107 108 6.565999 CGGAAAGCAACTAAACTTCCAGTTAG 60.566 42.308 0.00 0.00 37.47 2.34
108 109 6.485648 GGAAAGCAACTAAACTTCCAGTTAGA 59.514 38.462 0.00 0.00 37.47 2.10
109 110 7.175119 GGAAAGCAACTAAACTTCCAGTTAGAT 59.825 37.037 0.00 0.00 37.47 1.98
110 111 8.465273 AAAGCAACTAAACTTCCAGTTAGATT 57.535 30.769 0.00 0.00 37.47 2.40
111 112 8.465273 AAGCAACTAAACTTCCAGTTAGATTT 57.535 30.769 0.00 0.00 37.47 2.17
112 113 9.569122 AAGCAACTAAACTTCCAGTTAGATTTA 57.431 29.630 0.00 0.00 37.47 1.40
113 114 9.569122 AGCAACTAAACTTCCAGTTAGATTTAA 57.431 29.630 0.00 0.00 37.47 1.52
114 115 9.827411 GCAACTAAACTTCCAGTTAGATTTAAG 57.173 33.333 0.00 0.00 37.47 1.85
173 174 9.902196 AATTTAAACTAAACTATGTTTCACCGG 57.098 29.630 0.00 0.00 37.53 5.28
174 175 8.674263 TTTAAACTAAACTATGTTTCACCGGA 57.326 30.769 9.46 0.00 37.53 5.14
175 176 8.851541 TTAAACTAAACTATGTTTCACCGGAT 57.148 30.769 9.46 0.00 37.53 4.18
176 177 6.737254 AACTAAACTATGTTTCACCGGATG 57.263 37.500 9.46 2.48 0.00 3.51
177 178 6.045072 ACTAAACTATGTTTCACCGGATGA 57.955 37.500 9.46 5.40 34.65 2.92
178 179 6.650120 ACTAAACTATGTTTCACCGGATGAT 58.350 36.000 9.46 0.00 37.11 2.45
179 180 7.788026 ACTAAACTATGTTTCACCGGATGATA 58.212 34.615 9.46 0.35 37.11 2.15
180 181 8.262227 ACTAAACTATGTTTCACCGGATGATAA 58.738 33.333 9.46 3.41 37.11 1.75
181 182 9.273016 CTAAACTATGTTTCACCGGATGATAAT 57.727 33.333 9.46 5.36 37.11 1.28
183 184 9.793259 AAACTATGTTTCACCGGATGATAATAT 57.207 29.630 9.46 10.95 37.11 1.28
192 193 9.567776 TTCACCGGATGATAATATAAATTGTGT 57.432 29.630 9.46 0.00 37.11 3.72
193 194 8.998377 TCACCGGATGATAATATAAATTGTGTG 58.002 33.333 9.46 0.00 29.99 3.82
194 195 8.783093 CACCGGATGATAATATAAATTGTGTGT 58.217 33.333 9.46 0.00 0.00 3.72
195 196 8.999431 ACCGGATGATAATATAAATTGTGTGTC 58.001 33.333 9.46 0.00 0.00 3.67
196 197 8.168626 CCGGATGATAATATAAATTGTGTGTCG 58.831 37.037 0.00 0.00 0.00 4.35
197 198 8.921670 CGGATGATAATATAAATTGTGTGTCGA 58.078 33.333 0.00 0.00 0.00 4.20
218 219 7.473027 TCGACTTTCGATTAAGAAGTTTGTT 57.527 32.000 3.89 0.00 44.82 2.83
219 220 8.578308 TCGACTTTCGATTAAGAAGTTTGTTA 57.422 30.769 3.89 0.00 44.82 2.41
220 221 9.033481 TCGACTTTCGATTAAGAAGTTTGTTAA 57.967 29.630 3.89 0.00 44.82 2.01
221 222 9.640974 CGACTTTCGATTAAGAAGTTTGTTAAA 57.359 29.630 3.89 0.00 43.74 1.52
266 267 7.780008 TCAAATTTGTTTCTTACTCACGAGA 57.220 32.000 17.47 0.00 0.00 4.04
267 268 8.378172 TCAAATTTGTTTCTTACTCACGAGAT 57.622 30.769 17.47 0.00 0.00 2.75
268 269 8.495949 TCAAATTTGTTTCTTACTCACGAGATC 58.504 33.333 17.47 0.00 0.00 2.75
269 270 7.962964 AATTTGTTTCTTACTCACGAGATCA 57.037 32.000 0.00 0.00 0.00 2.92
270 271 7.588143 ATTTGTTTCTTACTCACGAGATCAG 57.412 36.000 0.00 0.00 0.00 2.90
271 272 4.486090 TGTTTCTTACTCACGAGATCAGC 58.514 43.478 0.00 0.00 0.00 4.26
272 273 4.218635 TGTTTCTTACTCACGAGATCAGCT 59.781 41.667 0.00 0.00 0.00 4.24
273 274 5.414765 TGTTTCTTACTCACGAGATCAGCTA 59.585 40.000 0.00 0.00 0.00 3.32
274 275 5.743026 TTCTTACTCACGAGATCAGCTAG 57.257 43.478 0.00 0.00 0.00 3.42
275 276 4.130857 TCTTACTCACGAGATCAGCTAGG 58.869 47.826 0.00 0.00 0.00 3.02
276 277 2.428544 ACTCACGAGATCAGCTAGGT 57.571 50.000 0.00 0.00 0.00 3.08
277 278 2.294074 ACTCACGAGATCAGCTAGGTC 58.706 52.381 0.00 0.00 0.00 3.85
278 279 1.606668 CTCACGAGATCAGCTAGGTCC 59.393 57.143 0.00 0.00 0.00 4.46
279 280 0.309302 CACGAGATCAGCTAGGTCCG 59.691 60.000 0.00 0.00 0.00 4.79
280 281 0.180642 ACGAGATCAGCTAGGTCCGA 59.819 55.000 0.00 0.00 0.00 4.55
281 282 1.202830 ACGAGATCAGCTAGGTCCGAT 60.203 52.381 0.00 0.00 0.00 4.18
282 283 1.466950 CGAGATCAGCTAGGTCCGATC 59.533 57.143 12.19 12.19 35.54 3.69
283 284 2.509569 GAGATCAGCTAGGTCCGATCA 58.490 52.381 18.97 0.00 37.36 2.92
284 285 2.887783 GAGATCAGCTAGGTCCGATCAA 59.112 50.000 18.97 0.00 37.36 2.57
285 286 3.300388 AGATCAGCTAGGTCCGATCAAA 58.700 45.455 18.97 0.00 37.36 2.69
286 287 3.706594 AGATCAGCTAGGTCCGATCAAAA 59.293 43.478 18.97 0.00 37.36 2.44
287 288 3.526931 TCAGCTAGGTCCGATCAAAAG 57.473 47.619 0.00 0.00 0.00 2.27
288 289 2.832129 TCAGCTAGGTCCGATCAAAAGT 59.168 45.455 0.00 0.00 0.00 2.66
289 290 3.260884 TCAGCTAGGTCCGATCAAAAGTT 59.739 43.478 0.00 0.00 0.00 2.66
290 291 4.464951 TCAGCTAGGTCCGATCAAAAGTTA 59.535 41.667 0.00 0.00 0.00 2.24
291 292 4.806247 CAGCTAGGTCCGATCAAAAGTTAG 59.194 45.833 0.00 0.00 0.00 2.34
292 293 4.466726 AGCTAGGTCCGATCAAAAGTTAGT 59.533 41.667 0.00 0.00 0.00 2.24
293 294 4.567159 GCTAGGTCCGATCAAAAGTTAGTG 59.433 45.833 0.00 0.00 0.00 2.74
294 295 3.939066 AGGTCCGATCAAAAGTTAGTGG 58.061 45.455 0.00 0.00 0.00 4.00
295 296 3.581332 AGGTCCGATCAAAAGTTAGTGGA 59.419 43.478 0.00 0.00 0.00 4.02
296 297 3.933332 GGTCCGATCAAAAGTTAGTGGAG 59.067 47.826 0.00 0.00 0.00 3.86
297 298 4.562963 GGTCCGATCAAAAGTTAGTGGAGT 60.563 45.833 0.00 0.00 0.00 3.85
298 299 5.337009 GGTCCGATCAAAAGTTAGTGGAGTA 60.337 44.000 0.00 0.00 0.00 2.59
299 300 6.161381 GTCCGATCAAAAGTTAGTGGAGTAA 58.839 40.000 0.00 0.00 0.00 2.24
300 301 6.647895 GTCCGATCAAAAGTTAGTGGAGTAAA 59.352 38.462 0.00 0.00 0.00 2.01
301 302 7.172019 GTCCGATCAAAAGTTAGTGGAGTAAAA 59.828 37.037 0.00 0.00 0.00 1.52
302 303 7.881232 TCCGATCAAAAGTTAGTGGAGTAAAAT 59.119 33.333 0.00 0.00 0.00 1.82
303 304 8.512138 CCGATCAAAAGTTAGTGGAGTAAAATT 58.488 33.333 0.00 0.00 0.00 1.82
318 319 9.199982 TGGAGTAAAATTACTTCACTAAGAACG 57.800 33.333 9.72 0.00 42.77 3.95
319 320 9.415544 GGAGTAAAATTACTTCACTAAGAACGA 57.584 33.333 7.23 0.00 43.64 3.85
321 322 9.420551 AGTAAAATTACTTCACTAAGAACGAGG 57.579 33.333 0.00 0.00 40.96 4.63
322 323 6.723131 AAATTACTTCACTAAGAACGAGGC 57.277 37.500 0.00 0.00 36.50 4.70
323 324 2.349297 ACTTCACTAAGAACGAGGCG 57.651 50.000 0.00 0.00 36.50 5.52
324 325 1.884579 ACTTCACTAAGAACGAGGCGA 59.115 47.619 0.00 0.00 36.50 5.54
325 326 2.492484 ACTTCACTAAGAACGAGGCGAT 59.508 45.455 0.00 0.00 36.50 4.58
326 327 3.056749 ACTTCACTAAGAACGAGGCGATT 60.057 43.478 0.00 0.00 36.50 3.34
327 328 3.146618 TCACTAAGAACGAGGCGATTC 57.853 47.619 0.00 0.00 0.00 2.52
328 329 1.846782 CACTAAGAACGAGGCGATTCG 59.153 52.381 0.62 0.62 45.70 3.34
329 330 1.202268 ACTAAGAACGAGGCGATTCGG 60.202 52.381 8.34 0.00 44.57 4.30
330 331 0.813184 TAAGAACGAGGCGATTCGGT 59.187 50.000 8.34 6.60 44.45 4.69
331 332 0.736325 AAGAACGAGGCGATTCGGTG 60.736 55.000 8.34 0.00 41.28 4.94
332 333 2.799540 GAACGAGGCGATTCGGTGC 61.800 63.158 8.34 0.00 41.28 5.01
338 339 3.014856 GCGATTCGGTGCCTAAGC 58.985 61.111 8.34 0.00 40.48 3.09
339 340 1.521681 GCGATTCGGTGCCTAAGCT 60.522 57.895 8.34 0.00 40.80 3.74
340 341 1.491505 GCGATTCGGTGCCTAAGCTC 61.492 60.000 8.34 0.00 40.80 4.09
341 342 0.179111 CGATTCGGTGCCTAAGCTCA 60.179 55.000 0.00 0.00 40.80 4.26
342 343 1.576356 GATTCGGTGCCTAAGCTCAG 58.424 55.000 0.00 0.00 40.80 3.35
343 344 0.462759 ATTCGGTGCCTAAGCTCAGC 60.463 55.000 0.00 0.00 40.80 4.26
344 345 1.544825 TTCGGTGCCTAAGCTCAGCT 61.545 55.000 0.00 0.00 42.56 4.24
345 346 1.812922 CGGTGCCTAAGCTCAGCTG 60.813 63.158 7.63 7.63 39.62 4.24
346 347 2.111582 GGTGCCTAAGCTCAGCTGC 61.112 63.158 9.47 0.00 39.62 5.25
347 348 1.376424 GTGCCTAAGCTCAGCTGCA 60.376 57.895 9.47 2.14 39.62 4.41
348 349 1.376424 TGCCTAAGCTCAGCTGCAC 60.376 57.895 9.47 2.91 39.62 4.57
349 350 2.111582 GCCTAAGCTCAGCTGCACC 61.112 63.158 9.47 0.00 39.62 5.01
350 351 1.812922 CCTAAGCTCAGCTGCACCG 60.813 63.158 9.47 0.00 39.62 4.94
351 352 2.434884 TAAGCTCAGCTGCACCGC 60.435 61.111 9.47 8.83 39.62 5.68
355 356 3.561213 CTCAGCTGCACCGCGATG 61.561 66.667 8.23 0.00 34.40 3.84
360 361 3.190849 CTGCACCGCGATGGACAG 61.191 66.667 8.23 0.00 42.00 3.51
361 362 3.647649 CTGCACCGCGATGGACAGA 62.648 63.158 8.23 0.00 43.65 3.41
362 363 2.434185 GCACCGCGATGGACAGAA 60.434 61.111 8.23 0.00 42.00 3.02
363 364 2.032634 GCACCGCGATGGACAGAAA 61.033 57.895 8.23 0.00 42.00 2.52
364 365 1.573829 GCACCGCGATGGACAGAAAA 61.574 55.000 8.23 0.00 42.00 2.29
365 366 1.086696 CACCGCGATGGACAGAAAAT 58.913 50.000 8.23 0.00 42.00 1.82
366 367 1.468520 CACCGCGATGGACAGAAAATT 59.531 47.619 8.23 0.00 42.00 1.82
367 368 1.737793 ACCGCGATGGACAGAAAATTC 59.262 47.619 8.23 0.00 42.00 2.17
368 369 1.737236 CCGCGATGGACAGAAAATTCA 59.263 47.619 8.23 0.00 42.00 2.57
369 370 2.476185 CCGCGATGGACAGAAAATTCAC 60.476 50.000 8.23 0.00 42.00 3.18
370 371 2.159430 CGCGATGGACAGAAAATTCACA 59.841 45.455 0.00 0.00 0.00 3.58
371 372 3.364864 CGCGATGGACAGAAAATTCACAA 60.365 43.478 0.00 0.00 0.00 3.33
372 373 4.545610 GCGATGGACAGAAAATTCACAAA 58.454 39.130 0.00 0.00 0.00 2.83
373 374 4.382754 GCGATGGACAGAAAATTCACAAAC 59.617 41.667 0.00 0.00 0.00 2.93
374 375 5.518812 CGATGGACAGAAAATTCACAAACA 58.481 37.500 0.00 0.00 0.00 2.83
375 376 5.976534 CGATGGACAGAAAATTCACAAACAA 59.023 36.000 0.00 0.00 0.00 2.83
376 377 6.642131 CGATGGACAGAAAATTCACAAACAAT 59.358 34.615 0.00 0.00 0.00 2.71
377 378 7.807433 CGATGGACAGAAAATTCACAAACAATA 59.193 33.333 0.00 0.00 0.00 1.90
378 379 8.816640 ATGGACAGAAAATTCACAAACAATAC 57.183 30.769 0.00 0.00 0.00 1.89
379 380 8.006298 TGGACAGAAAATTCACAAACAATACT 57.994 30.769 0.00 0.00 0.00 2.12
380 381 9.126151 TGGACAGAAAATTCACAAACAATACTA 57.874 29.630 0.00 0.00 0.00 1.82
381 382 9.612620 GGACAGAAAATTCACAAACAATACTAG 57.387 33.333 0.00 0.00 0.00 2.57
427 428 3.479505 TTTGCGTGGACGATAATTTGG 57.520 42.857 2.73 0.00 43.02 3.28
428 429 2.102070 TGCGTGGACGATAATTTGGT 57.898 45.000 2.73 0.00 43.02 3.67
429 430 1.735018 TGCGTGGACGATAATTTGGTG 59.265 47.619 2.73 0.00 43.02 4.17
430 431 1.735571 GCGTGGACGATAATTTGGTGT 59.264 47.619 2.73 0.00 43.02 4.16
431 432 2.931325 GCGTGGACGATAATTTGGTGTA 59.069 45.455 2.73 0.00 43.02 2.90
432 433 3.558418 GCGTGGACGATAATTTGGTGTAT 59.442 43.478 2.73 0.00 43.02 2.29
433 434 4.551990 GCGTGGACGATAATTTGGTGTATG 60.552 45.833 2.73 0.00 43.02 2.39
434 435 4.806775 CGTGGACGATAATTTGGTGTATGA 59.193 41.667 0.00 0.00 43.02 2.15
435 436 5.465390 CGTGGACGATAATTTGGTGTATGAT 59.535 40.000 0.00 0.00 43.02 2.45
436 437 6.563939 CGTGGACGATAATTTGGTGTATGATG 60.564 42.308 0.00 0.00 43.02 3.07
437 438 5.238432 TGGACGATAATTTGGTGTATGATGC 59.762 40.000 0.00 0.00 0.00 3.91
438 439 5.342806 ACGATAATTTGGTGTATGATGCG 57.657 39.130 0.00 0.00 0.00 4.73
439 440 4.151070 CGATAATTTGGTGTATGATGCGC 58.849 43.478 0.00 0.00 0.00 6.09
440 441 4.083855 CGATAATTTGGTGTATGATGCGCT 60.084 41.667 9.73 0.00 0.00 5.92
441 442 3.698029 AATTTGGTGTATGATGCGCTC 57.302 42.857 9.73 4.27 0.00 5.03
442 443 1.378531 TTTGGTGTATGATGCGCTCC 58.621 50.000 9.73 0.00 0.00 4.70
443 444 0.251634 TTGGTGTATGATGCGCTCCA 59.748 50.000 9.73 6.88 0.00 3.86
444 445 0.251634 TGGTGTATGATGCGCTCCAA 59.748 50.000 9.73 0.00 0.00 3.53
445 446 1.339535 TGGTGTATGATGCGCTCCAAA 60.340 47.619 9.73 0.00 0.00 3.28
446 447 1.949525 GGTGTATGATGCGCTCCAAAT 59.050 47.619 9.73 0.00 0.00 2.32
447 448 2.358898 GGTGTATGATGCGCTCCAAATT 59.641 45.455 9.73 0.00 0.00 1.82
448 449 3.181487 GGTGTATGATGCGCTCCAAATTT 60.181 43.478 9.73 0.00 0.00 1.82
449 450 4.037690 GTGTATGATGCGCTCCAAATTTC 58.962 43.478 9.73 0.00 0.00 2.17
450 451 3.693578 TGTATGATGCGCTCCAAATTTCA 59.306 39.130 9.73 0.00 0.00 2.69
451 452 2.925578 TGATGCGCTCCAAATTTCAG 57.074 45.000 9.73 0.00 0.00 3.02
452 453 2.435422 TGATGCGCTCCAAATTTCAGA 58.565 42.857 9.73 0.00 0.00 3.27
453 454 3.018856 TGATGCGCTCCAAATTTCAGAT 58.981 40.909 9.73 0.00 0.00 2.90
454 455 3.444742 TGATGCGCTCCAAATTTCAGATT 59.555 39.130 9.73 0.00 0.00 2.40
455 456 4.639755 TGATGCGCTCCAAATTTCAGATTA 59.360 37.500 9.73 0.00 0.00 1.75
456 457 5.300034 TGATGCGCTCCAAATTTCAGATTAT 59.700 36.000 9.73 0.00 0.00 1.28
457 458 5.581126 TGCGCTCCAAATTTCAGATTATT 57.419 34.783 9.73 0.00 0.00 1.40
458 459 5.964758 TGCGCTCCAAATTTCAGATTATTT 58.035 33.333 9.73 0.00 0.00 1.40
459 460 5.806502 TGCGCTCCAAATTTCAGATTATTTG 59.193 36.000 9.73 9.87 40.01 2.32
473 474 7.212976 TCAGATTATTTGGACATCTGAGTAGC 58.787 38.462 6.94 0.00 45.18 3.58
474 475 7.070447 TCAGATTATTTGGACATCTGAGTAGCT 59.930 37.037 6.94 0.00 45.18 3.32
475 476 7.714377 CAGATTATTTGGACATCTGAGTAGCTT 59.286 37.037 0.00 0.00 44.64 3.74
476 477 8.270744 AGATTATTTGGACATCTGAGTAGCTTT 58.729 33.333 0.00 0.00 0.00 3.51
477 478 8.814038 ATTATTTGGACATCTGAGTAGCTTTT 57.186 30.769 0.00 0.00 0.00 2.27
478 479 5.947228 TTTGGACATCTGAGTAGCTTTTG 57.053 39.130 0.00 0.00 0.00 2.44
479 480 4.890158 TGGACATCTGAGTAGCTTTTGA 57.110 40.909 0.00 0.00 0.00 2.69
480 481 5.426689 TGGACATCTGAGTAGCTTTTGAT 57.573 39.130 0.00 0.00 0.00 2.57
481 482 6.544928 TGGACATCTGAGTAGCTTTTGATA 57.455 37.500 0.00 0.00 0.00 2.15
482 483 6.946340 TGGACATCTGAGTAGCTTTTGATAA 58.054 36.000 0.00 0.00 0.00 1.75
483 484 7.394016 TGGACATCTGAGTAGCTTTTGATAAA 58.606 34.615 0.00 0.00 0.00 1.40
484 485 7.882791 TGGACATCTGAGTAGCTTTTGATAAAA 59.117 33.333 0.00 0.00 0.00 1.52
485 486 8.730680 GGACATCTGAGTAGCTTTTGATAAAAA 58.269 33.333 0.00 0.00 0.00 1.94
506 507 7.654022 AAAAAGACAAATTTAGGGTCTGTCA 57.346 32.000 9.66 0.00 40.80 3.58
507 508 7.654022 AAAAGACAAATTTAGGGTCTGTCAA 57.346 32.000 9.66 0.00 40.80 3.18
508 509 7.654022 AAAGACAAATTTAGGGTCTGTCAAA 57.346 32.000 9.66 0.00 40.80 2.69
509 510 7.654022 AAGACAAATTTAGGGTCTGTCAAAA 57.346 32.000 9.66 0.00 40.80 2.44
510 511 7.654022 AGACAAATTTAGGGTCTGTCAAAAA 57.346 32.000 8.44 0.00 40.21 1.94
511 512 7.716612 AGACAAATTTAGGGTCTGTCAAAAAG 58.283 34.615 8.44 0.00 40.21 2.27
512 513 7.342026 AGACAAATTTAGGGTCTGTCAAAAAGT 59.658 33.333 8.44 0.00 40.21 2.66
513 514 7.847096 ACAAATTTAGGGTCTGTCAAAAAGTT 58.153 30.769 0.00 0.00 0.00 2.66
514 515 8.318412 ACAAATTTAGGGTCTGTCAAAAAGTTT 58.682 29.630 0.00 0.00 0.00 2.66
515 516 9.810545 CAAATTTAGGGTCTGTCAAAAAGTTTA 57.189 29.630 0.00 0.00 0.00 2.01
516 517 9.811995 AAATTTAGGGTCTGTCAAAAAGTTTAC 57.188 29.630 0.00 0.00 0.00 2.01
517 518 8.762481 ATTTAGGGTCTGTCAAAAAGTTTACT 57.238 30.769 0.00 0.00 0.00 2.24
518 519 9.856162 ATTTAGGGTCTGTCAAAAAGTTTACTA 57.144 29.630 0.00 0.00 0.00 1.82
519 520 9.856162 TTTAGGGTCTGTCAAAAAGTTTACTAT 57.144 29.630 0.00 0.00 0.00 2.12
520 521 9.856162 TTAGGGTCTGTCAAAAAGTTTACTATT 57.144 29.630 0.00 0.00 0.00 1.73
521 522 8.392372 AGGGTCTGTCAAAAAGTTTACTATTC 57.608 34.615 0.00 0.00 0.00 1.75
522 523 7.996644 AGGGTCTGTCAAAAAGTTTACTATTCA 59.003 33.333 0.00 0.00 0.00 2.57
523 524 8.793592 GGGTCTGTCAAAAAGTTTACTATTCAT 58.206 33.333 0.00 0.00 0.00 2.57
524 525 9.612620 GGTCTGTCAAAAAGTTTACTATTCATG 57.387 33.333 0.00 0.00 0.00 3.07
559 560 8.730680 TGACCTATTTTGTATTTTTCTGAGAGC 58.269 33.333 0.00 0.00 0.00 4.09
560 561 8.870075 ACCTATTTTGTATTTTTCTGAGAGCT 57.130 30.769 0.00 0.00 0.00 4.09
561 562 9.959721 ACCTATTTTGTATTTTTCTGAGAGCTA 57.040 29.630 0.00 0.00 0.00 3.32
594 595 8.817100 TGTACAAATGATCTACAATTTAGAGCG 58.183 33.333 0.00 0.00 33.06 5.03
595 596 7.251704 ACAAATGATCTACAATTTAGAGCGG 57.748 36.000 0.00 2.86 33.06 5.52
596 597 7.047891 ACAAATGATCTACAATTTAGAGCGGA 58.952 34.615 0.00 0.00 33.06 5.54
597 598 7.011482 ACAAATGATCTACAATTTAGAGCGGAC 59.989 37.037 0.00 0.00 33.06 4.79
598 599 4.945246 TGATCTACAATTTAGAGCGGACC 58.055 43.478 0.00 0.00 33.06 4.46
599 600 4.649674 TGATCTACAATTTAGAGCGGACCT 59.350 41.667 0.00 0.00 33.06 3.85
600 601 4.650754 TCTACAATTTAGAGCGGACCTC 57.349 45.455 0.00 0.00 41.07 3.85
601 602 4.021229 TCTACAATTTAGAGCGGACCTCA 58.979 43.478 0.00 0.00 43.31 3.86
602 603 3.914426 ACAATTTAGAGCGGACCTCAT 57.086 42.857 0.00 0.00 43.31 2.90
603 604 3.535561 ACAATTTAGAGCGGACCTCATG 58.464 45.455 0.00 0.00 43.31 3.07
604 605 2.246719 ATTTAGAGCGGACCTCATGC 57.753 50.000 0.00 0.00 43.31 4.06
605 606 0.901827 TTTAGAGCGGACCTCATGCA 59.098 50.000 0.00 0.00 43.31 3.96
606 607 1.123077 TTAGAGCGGACCTCATGCAT 58.877 50.000 0.00 0.00 43.31 3.96
607 608 0.676184 TAGAGCGGACCTCATGCATC 59.324 55.000 0.00 0.00 43.31 3.91
608 609 1.144716 GAGCGGACCTCATGCATCA 59.855 57.895 0.00 0.00 40.45 3.07
609 610 0.462581 GAGCGGACCTCATGCATCAA 60.463 55.000 0.00 0.00 40.45 2.57
610 611 0.035152 AGCGGACCTCATGCATCAAA 60.035 50.000 0.00 0.00 0.00 2.69
611 612 1.027357 GCGGACCTCATGCATCAAAT 58.973 50.000 0.00 0.00 0.00 2.32
612 613 1.406539 GCGGACCTCATGCATCAAATT 59.593 47.619 0.00 0.00 0.00 1.82
613 614 2.618241 GCGGACCTCATGCATCAAATTA 59.382 45.455 0.00 0.00 0.00 1.40
614 615 3.254166 GCGGACCTCATGCATCAAATTAT 59.746 43.478 0.00 0.00 0.00 1.28
615 616 4.261741 GCGGACCTCATGCATCAAATTATT 60.262 41.667 0.00 0.00 0.00 1.40
616 617 5.737063 GCGGACCTCATGCATCAAATTATTT 60.737 40.000 0.00 0.00 0.00 1.40
617 618 6.275335 CGGACCTCATGCATCAAATTATTTT 58.725 36.000 0.00 0.00 0.00 1.82
618 619 6.418819 CGGACCTCATGCATCAAATTATTTTC 59.581 38.462 0.00 0.00 0.00 2.29
619 620 6.703165 GGACCTCATGCATCAAATTATTTTCC 59.297 38.462 0.00 0.00 0.00 3.13
620 621 7.185318 ACCTCATGCATCAAATTATTTTCCA 57.815 32.000 0.00 0.00 0.00 3.53
621 622 7.798071 ACCTCATGCATCAAATTATTTTCCAT 58.202 30.769 0.00 0.00 0.00 3.41
622 623 7.713507 ACCTCATGCATCAAATTATTTTCCATG 59.286 33.333 0.00 8.81 0.00 3.66
623 624 7.307751 CCTCATGCATCAAATTATTTTCCATGC 60.308 37.037 14.36 14.36 38.02 4.06
624 625 7.048512 TCATGCATCAAATTATTTTCCATGCA 58.951 30.769 21.11 21.11 44.48 3.96
625 626 7.553044 TCATGCATCAAATTATTTTCCATGCAA 59.447 29.630 21.99 11.42 44.05 4.08
626 627 7.683437 TGCATCAAATTATTTTCCATGCAAA 57.317 28.000 18.59 4.98 41.17 3.68
627 628 8.282455 TGCATCAAATTATTTTCCATGCAAAT 57.718 26.923 18.59 6.40 41.17 2.32
628 629 9.392259 TGCATCAAATTATTTTCCATGCAAATA 57.608 25.926 18.59 4.84 41.17 1.40
697 698 4.871933 AAAAAGGGTACAAATGAGCCTG 57.128 40.909 0.00 0.00 44.06 4.85
698 699 2.514458 AAGGGTACAAATGAGCCTGG 57.486 50.000 0.00 0.00 44.06 4.45
699 700 0.034089 AGGGTACAAATGAGCCTGGC 60.034 55.000 11.65 11.65 43.20 4.85
700 701 1.037579 GGGTACAAATGAGCCTGGCC 61.038 60.000 16.57 7.66 0.00 5.36
701 702 0.034089 GGTACAAATGAGCCTGGCCT 60.034 55.000 16.57 2.26 0.00 5.19
702 703 1.211949 GGTACAAATGAGCCTGGCCTA 59.788 52.381 16.57 4.82 0.00 3.93
703 704 2.356741 GGTACAAATGAGCCTGGCCTAA 60.357 50.000 16.57 0.90 0.00 2.69
704 705 2.603075 ACAAATGAGCCTGGCCTAAA 57.397 45.000 16.57 0.00 0.00 1.85
705 706 2.888212 ACAAATGAGCCTGGCCTAAAA 58.112 42.857 16.57 0.00 0.00 1.52
706 707 3.238597 ACAAATGAGCCTGGCCTAAAAA 58.761 40.909 16.57 0.00 0.00 1.94
737 738 6.642707 ATTCACCCACAAAACTTTATTCGA 57.357 33.333 0.00 0.00 0.00 3.71
748 749 5.587388 AACTTTATTCGACCGGATACTCA 57.413 39.130 9.46 0.00 0.00 3.41
786 787 2.479566 TTGGCTAGAGTTGCTCCAAG 57.520 50.000 0.00 0.00 33.37 3.61
796 797 1.398390 GTTGCTCCAAGATAAGTGGCG 59.602 52.381 0.00 0.00 35.99 5.69
832 833 2.176045 TCTCGACAATAAGGTGGCTGA 58.824 47.619 0.00 0.00 0.00 4.26
844 845 3.547746 AGGTGGCTGAAAACGAAACTTA 58.452 40.909 0.00 0.00 0.00 2.24
847 848 4.738252 GGTGGCTGAAAACGAAACTTAAAG 59.262 41.667 0.00 0.00 0.00 1.85
873 874 3.689649 GCGAGGGCTATTTCAGAAAAGAA 59.310 43.478 0.00 0.00 35.83 2.52
900 902 0.945813 TGGCGTTTCGGTTAACCAAG 59.054 50.000 24.14 9.21 35.14 3.61
902 904 1.334556 GGCGTTTCGGTTAACCAAGTT 59.665 47.619 24.14 0.00 35.14 2.66
916 955 3.805207 ACCAAGTTCTTTGACTTACGCT 58.195 40.909 0.00 0.00 37.76 5.07
927 966 8.282124 TCTTTGACTTACGCTCATATTATTCG 57.718 34.615 0.00 0.00 0.00 3.34
938 977 3.508793 TCATATTATTCGTCGTCCTCCCC 59.491 47.826 0.00 0.00 0.00 4.81
939 978 2.083628 ATTATTCGTCGTCCTCCCCT 57.916 50.000 0.00 0.00 0.00 4.79
940 979 1.396653 TTATTCGTCGTCCTCCCCTC 58.603 55.000 0.00 0.00 0.00 4.30
1208 1270 2.024846 TCGTCATCTCCTCCTTCTCCTT 60.025 50.000 0.00 0.00 0.00 3.36
1210 1272 2.360801 GTCATCTCCTCCTTCTCCTTCG 59.639 54.545 0.00 0.00 0.00 3.79
1715 1798 4.103103 GAAGCGCAAGAACCGGGC 62.103 66.667 11.47 0.00 42.25 6.13
2011 2114 8.637986 TGGCTTCTAACATTTGTTCTTTGTAAT 58.362 29.630 0.00 0.00 39.31 1.89
2016 2119 4.893608 ACATTTGTTCTTTGTAATGGGGC 58.106 39.130 0.00 0.00 33.41 5.80
2028 2131 2.990740 AATGGGGCCTTGTGTAAAGA 57.009 45.000 0.84 0.00 0.00 2.52
2033 2136 2.100197 GGGCCTTGTGTAAAGAATCCC 58.900 52.381 0.84 0.00 0.00 3.85
2105 2208 7.903431 GTCAATTACGTACAAGATTCCACATTC 59.097 37.037 0.00 0.00 0.00 2.67
2179 2286 1.067565 TCATGAGCACGACAGTCTTCC 60.068 52.381 0.00 0.00 0.00 3.46
2192 2299 1.717077 AGTCTTCCTCACCTACCTCCA 59.283 52.381 0.00 0.00 0.00 3.86
2296 2403 0.174617 GCAAGGGGAGAACGAGAGAG 59.825 60.000 0.00 0.00 0.00 3.20
2374 2481 3.118847 AGTTTAAGTAAGGGAGCGCCTAC 60.119 47.826 2.29 1.83 0.00 3.18
2470 2577 4.748600 GGTATTGTACCTCCGTTTGATAGC 59.251 45.833 0.00 0.00 45.52 2.97
2522 2645 0.530870 GCTTTCTCGATAGGCGGCTT 60.531 55.000 19.76 4.91 41.33 4.35
2609 2740 1.968493 AGGCTTGTCCGTGTCTCTTTA 59.032 47.619 0.00 0.00 40.77 1.85
2615 2746 6.759827 GGCTTGTCCGTGTCTCTTTATTATTA 59.240 38.462 0.00 0.00 0.00 0.98
2741 2900 9.329913 CACACGATTTTCCTATTTTTCTTGTAG 57.670 33.333 0.00 0.00 0.00 2.74
2853 3019 2.224549 CCGAACGCTTGTTGTAATTCCA 59.775 45.455 0.00 0.00 35.50 3.53
3000 3168 0.676782 ATTACTCGGGCTGCACAACC 60.677 55.000 1.50 0.00 0.00 3.77
3044 3213 2.175878 AGCTGACGACTTTCATGCTT 57.824 45.000 0.00 0.00 30.52 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.671054 ATTGTTGTCGCTGTCGGGG 60.671 57.895 0.00 0.00 36.13 5.73
3 4 0.163788 GTCATTGTTGTCGCTGTCGG 59.836 55.000 0.00 0.00 36.13 4.79
5 6 1.597195 TGTGTCATTGTTGTCGCTGTC 59.403 47.619 0.00 0.00 0.00 3.51
7 8 2.577450 CATGTGTCATTGTTGTCGCTG 58.423 47.619 0.00 0.00 0.00 5.18
10 11 1.401409 GGCCATGTGTCATTGTTGTCG 60.401 52.381 0.00 0.00 0.00 4.35
11 12 1.888512 AGGCCATGTGTCATTGTTGTC 59.111 47.619 5.01 0.00 0.00 3.18
12 13 1.614903 CAGGCCATGTGTCATTGTTGT 59.385 47.619 5.01 0.00 0.00 3.32
13 14 1.887854 TCAGGCCATGTGTCATTGTTG 59.112 47.619 5.01 0.00 0.00 3.33
14 15 1.888512 GTCAGGCCATGTGTCATTGTT 59.111 47.619 5.01 0.00 0.00 2.83
15 16 1.538047 GTCAGGCCATGTGTCATTGT 58.462 50.000 5.01 0.00 0.00 2.71
16 17 0.813184 GGTCAGGCCATGTGTCATTG 59.187 55.000 5.01 0.00 37.17 2.82
17 18 0.323725 GGGTCAGGCCATGTGTCATT 60.324 55.000 5.01 0.00 39.65 2.57
18 19 1.304282 GGGTCAGGCCATGTGTCAT 59.696 57.895 5.01 0.00 39.65 3.06
19 20 2.756400 GGGTCAGGCCATGTGTCA 59.244 61.111 5.01 0.00 39.65 3.58
20 21 2.044946 GGGGTCAGGCCATGTGTC 60.045 66.667 5.01 0.00 39.65 3.67
21 22 2.240918 ATGGGGTCAGGCCATGTGT 61.241 57.895 5.01 0.00 39.65 3.72
22 23 1.755395 CATGGGGTCAGGCCATGTG 60.755 63.158 5.01 0.00 39.65 3.21
23 24 2.685366 CATGGGGTCAGGCCATGT 59.315 61.111 5.01 0.00 39.65 3.21
24 25 2.123597 CCATGGGGTCAGGCCATG 60.124 66.667 5.01 0.00 40.42 3.66
25 26 3.432335 CCCATGGGGTCAGGCCAT 61.432 66.667 24.53 0.00 38.25 4.40
37 38 2.607411 TAGACATGCCACCGCCCATG 62.607 60.000 0.00 0.00 43.34 3.66
38 39 2.329539 CTAGACATGCCACCGCCCAT 62.330 60.000 0.00 0.00 0.00 4.00
39 40 3.006133 TAGACATGCCACCGCCCA 61.006 61.111 0.00 0.00 0.00 5.36
40 41 2.203070 CTAGACATGCCACCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
41 42 2.203070 CCTAGACATGCCACCGCC 60.203 66.667 0.00 0.00 0.00 6.13
42 43 2.203070 CCCTAGACATGCCACCGC 60.203 66.667 0.00 0.00 0.00 5.68
43 44 2.203070 GCCCTAGACATGCCACCG 60.203 66.667 0.00 0.00 0.00 4.94
44 45 0.323360 TTTGCCCTAGACATGCCACC 60.323 55.000 0.00 0.00 0.00 4.61
45 46 0.811281 GTTTGCCCTAGACATGCCAC 59.189 55.000 0.00 0.00 0.00 5.01
46 47 0.403655 TGTTTGCCCTAGACATGCCA 59.596 50.000 0.00 0.00 0.00 4.92
47 48 1.098050 CTGTTTGCCCTAGACATGCC 58.902 55.000 0.00 0.00 0.00 4.40
48 49 1.098050 CCTGTTTGCCCTAGACATGC 58.902 55.000 0.00 0.00 0.00 4.06
49 50 2.489329 CAACCTGTTTGCCCTAGACATG 59.511 50.000 0.00 0.00 0.00 3.21
50 51 2.108250 ACAACCTGTTTGCCCTAGACAT 59.892 45.455 0.00 0.00 39.01 3.06
51 52 1.493022 ACAACCTGTTTGCCCTAGACA 59.507 47.619 0.00 0.00 39.01 3.41
52 53 2.152016 GACAACCTGTTTGCCCTAGAC 58.848 52.381 0.00 0.00 39.01 2.59
53 54 1.073284 GGACAACCTGTTTGCCCTAGA 59.927 52.381 0.00 0.00 39.01 2.43
54 55 1.534729 GGACAACCTGTTTGCCCTAG 58.465 55.000 0.00 0.00 39.01 3.02
55 56 0.111639 GGGACAACCTGTTTGCCCTA 59.888 55.000 9.18 0.00 43.24 3.53
56 57 1.152546 GGGACAACCTGTTTGCCCT 60.153 57.895 9.18 0.00 43.24 5.19
57 58 3.455152 GGGACAACCTGTTTGCCC 58.545 61.111 2.72 2.72 41.47 5.36
66 67 2.432628 CGACTGCGAGGGACAACC 60.433 66.667 0.00 0.00 40.82 3.77
67 68 2.430382 TTCCGACTGCGAGGGACAAC 62.430 60.000 0.00 0.00 40.82 3.32
68 69 1.750341 TTTCCGACTGCGAGGGACAA 61.750 55.000 0.00 0.00 40.82 3.18
69 70 2.154798 CTTTCCGACTGCGAGGGACA 62.155 60.000 0.00 0.00 40.82 4.02
70 71 1.446272 CTTTCCGACTGCGAGGGAC 60.446 63.158 0.00 0.00 40.82 4.46
71 72 2.970639 CTTTCCGACTGCGAGGGA 59.029 61.111 0.00 0.00 40.82 4.20
72 73 2.815647 GCTTTCCGACTGCGAGGG 60.816 66.667 0.00 0.00 40.82 4.30
73 74 1.667830 TTGCTTTCCGACTGCGAGG 60.668 57.895 0.00 0.00 40.82 4.63
74 75 0.946221 AGTTGCTTTCCGACTGCGAG 60.946 55.000 0.00 0.00 40.82 5.03
75 76 0.315886 TAGTTGCTTTCCGACTGCGA 59.684 50.000 0.00 0.00 38.64 5.10
76 77 1.144969 TTAGTTGCTTTCCGACTGCG 58.855 50.000 0.00 0.00 38.64 5.18
77 78 2.548480 AGTTTAGTTGCTTTCCGACTGC 59.452 45.455 0.00 0.00 38.64 4.40
78 79 4.319549 GGAAGTTTAGTTGCTTTCCGACTG 60.320 45.833 0.00 0.00 38.64 3.51
79 80 3.813724 GGAAGTTTAGTTGCTTTCCGACT 59.186 43.478 0.00 0.00 41.20 4.18
80 81 3.562557 TGGAAGTTTAGTTGCTTTCCGAC 59.437 43.478 0.00 0.00 0.00 4.79
81 82 3.811083 TGGAAGTTTAGTTGCTTTCCGA 58.189 40.909 0.00 0.00 0.00 4.55
82 83 4.147219 CTGGAAGTTTAGTTGCTTTCCG 57.853 45.455 0.00 0.00 0.00 4.30
147 148 9.902196 CCGGTGAAACATAGTTTAGTTTAAATT 57.098 29.630 0.00 0.00 39.98 1.82
148 149 9.287373 TCCGGTGAAACATAGTTTAGTTTAAAT 57.713 29.630 0.00 0.00 39.98 1.40
149 150 8.674263 TCCGGTGAAACATAGTTTAGTTTAAA 57.326 30.769 0.00 0.00 39.98 1.52
150 151 8.723311 CATCCGGTGAAACATAGTTTAGTTTAA 58.277 33.333 0.00 0.00 39.98 1.52
151 152 8.095792 TCATCCGGTGAAACATAGTTTAGTTTA 58.904 33.333 0.00 0.00 39.98 2.01
152 153 6.938030 TCATCCGGTGAAACATAGTTTAGTTT 59.062 34.615 0.00 0.00 39.98 2.66
153 154 6.469410 TCATCCGGTGAAACATAGTTTAGTT 58.531 36.000 0.00 0.00 39.98 2.24
154 155 6.045072 TCATCCGGTGAAACATAGTTTAGT 57.955 37.500 0.00 0.00 39.98 2.24
155 156 8.657074 TTATCATCCGGTGAAACATAGTTTAG 57.343 34.615 0.00 0.00 40.97 1.85
157 158 9.793259 ATATTATCATCCGGTGAAACATAGTTT 57.207 29.630 0.00 0.00 40.97 2.66
166 167 9.567776 ACACAATTTATATTATCATCCGGTGAA 57.432 29.630 0.00 0.00 40.97 3.18
167 168 8.998377 CACACAATTTATATTATCATCCGGTGA 58.002 33.333 0.00 5.16 42.06 4.02
168 169 8.783093 ACACACAATTTATATTATCATCCGGTG 58.217 33.333 0.00 0.00 0.00 4.94
169 170 8.918202 ACACACAATTTATATTATCATCCGGT 57.082 30.769 0.00 0.00 0.00 5.28
170 171 8.168626 CGACACACAATTTATATTATCATCCGG 58.831 37.037 0.00 0.00 0.00 5.14
171 172 8.921670 TCGACACACAATTTATATTATCATCCG 58.078 33.333 0.00 0.00 0.00 4.18
178 179 9.356433 TCGAAAGTCGACACACAATTTATATTA 57.644 29.630 19.50 0.00 44.82 0.98
179 180 8.246908 TCGAAAGTCGACACACAATTTATATT 57.753 30.769 19.50 0.00 44.82 1.28
180 181 7.821595 TCGAAAGTCGACACACAATTTATAT 57.178 32.000 19.50 0.00 44.82 0.86
195 196 9.640974 TTTAACAAACTTCTTAATCGAAAGTCG 57.359 29.630 0.17 0.00 42.10 4.18
240 241 9.483916 TCTCGTGAGTAAGAAACAAATTTGATA 57.516 29.630 24.64 6.72 0.00 2.15
241 242 8.378172 TCTCGTGAGTAAGAAACAAATTTGAT 57.622 30.769 24.64 10.35 0.00 2.57
242 243 7.780008 TCTCGTGAGTAAGAAACAAATTTGA 57.220 32.000 24.64 0.00 0.00 2.69
243 244 8.282592 TGATCTCGTGAGTAAGAAACAAATTTG 58.717 33.333 16.67 16.67 0.00 2.32
244 245 8.378172 TGATCTCGTGAGTAAGAAACAAATTT 57.622 30.769 0.00 0.00 0.00 1.82
245 246 7.360438 GCTGATCTCGTGAGTAAGAAACAAATT 60.360 37.037 0.00 0.00 0.00 1.82
246 247 6.091441 GCTGATCTCGTGAGTAAGAAACAAAT 59.909 38.462 0.00 0.00 0.00 2.32
247 248 5.405571 GCTGATCTCGTGAGTAAGAAACAAA 59.594 40.000 0.00 0.00 0.00 2.83
248 249 4.923871 GCTGATCTCGTGAGTAAGAAACAA 59.076 41.667 0.00 0.00 0.00 2.83
249 250 4.218635 AGCTGATCTCGTGAGTAAGAAACA 59.781 41.667 0.00 0.00 0.00 2.83
250 251 4.739195 AGCTGATCTCGTGAGTAAGAAAC 58.261 43.478 0.00 0.00 0.00 2.78
251 252 5.066634 CCTAGCTGATCTCGTGAGTAAGAAA 59.933 44.000 0.00 0.00 0.00 2.52
252 253 4.576873 CCTAGCTGATCTCGTGAGTAAGAA 59.423 45.833 0.00 0.00 0.00 2.52
253 254 4.130857 CCTAGCTGATCTCGTGAGTAAGA 58.869 47.826 0.00 0.00 0.00 2.10
254 255 3.880490 ACCTAGCTGATCTCGTGAGTAAG 59.120 47.826 0.00 0.00 0.00 2.34
255 256 3.878103 GACCTAGCTGATCTCGTGAGTAA 59.122 47.826 0.00 0.00 0.00 2.24
256 257 3.468770 GACCTAGCTGATCTCGTGAGTA 58.531 50.000 0.00 0.00 0.00 2.59
257 258 2.294074 GACCTAGCTGATCTCGTGAGT 58.706 52.381 0.00 0.00 0.00 3.41
258 259 1.606668 GGACCTAGCTGATCTCGTGAG 59.393 57.143 0.00 0.00 0.00 3.51
259 260 1.681538 GGACCTAGCTGATCTCGTGA 58.318 55.000 0.00 0.00 0.00 4.35
260 261 0.309302 CGGACCTAGCTGATCTCGTG 59.691 60.000 0.00 0.00 0.00 4.35
261 262 0.180642 TCGGACCTAGCTGATCTCGT 59.819 55.000 0.00 0.00 0.00 4.18
262 263 1.466950 GATCGGACCTAGCTGATCTCG 59.533 57.143 10.40 0.00 43.93 4.04
263 264 2.509569 TGATCGGACCTAGCTGATCTC 58.490 52.381 15.89 0.00 46.25 2.75
264 265 2.666272 TGATCGGACCTAGCTGATCT 57.334 50.000 15.89 0.00 46.25 2.75
265 266 3.735237 TTTGATCGGACCTAGCTGATC 57.265 47.619 10.64 10.64 46.27 2.92
266 267 3.452627 ACTTTTGATCGGACCTAGCTGAT 59.547 43.478 0.00 0.00 36.61 2.90
267 268 2.832129 ACTTTTGATCGGACCTAGCTGA 59.168 45.455 0.00 0.00 0.00 4.26
268 269 3.252974 ACTTTTGATCGGACCTAGCTG 57.747 47.619 0.00 0.00 0.00 4.24
269 270 3.983044 AACTTTTGATCGGACCTAGCT 57.017 42.857 0.00 0.00 0.00 3.32
270 271 4.567159 CACTAACTTTTGATCGGACCTAGC 59.433 45.833 0.00 0.00 0.00 3.42
271 272 5.105473 TCCACTAACTTTTGATCGGACCTAG 60.105 44.000 0.00 0.00 0.00 3.02
272 273 4.773674 TCCACTAACTTTTGATCGGACCTA 59.226 41.667 0.00 0.00 0.00 3.08
273 274 3.581332 TCCACTAACTTTTGATCGGACCT 59.419 43.478 0.00 0.00 0.00 3.85
274 275 3.933332 CTCCACTAACTTTTGATCGGACC 59.067 47.826 0.00 0.00 0.00 4.46
275 276 4.566987 ACTCCACTAACTTTTGATCGGAC 58.433 43.478 0.00 0.00 0.00 4.79
276 277 4.884668 ACTCCACTAACTTTTGATCGGA 57.115 40.909 0.00 0.00 0.00 4.55
277 278 7.429636 TTTTACTCCACTAACTTTTGATCGG 57.570 36.000 0.00 0.00 0.00 4.18
292 293 9.199982 CGTTCTTAGTGAAGTAATTTTACTCCA 57.800 33.333 3.58 0.00 42.86 3.86
293 294 9.415544 TCGTTCTTAGTGAAGTAATTTTACTCC 57.584 33.333 3.58 0.00 42.86 3.85
295 296 9.420551 CCTCGTTCTTAGTGAAGTAATTTTACT 57.579 33.333 0.00 0.00 45.43 2.24
296 297 8.167345 GCCTCGTTCTTAGTGAAGTAATTTTAC 58.833 37.037 0.00 0.00 35.01 2.01
297 298 7.062605 CGCCTCGTTCTTAGTGAAGTAATTTTA 59.937 37.037 0.00 0.00 35.01 1.52
298 299 6.128634 CGCCTCGTTCTTAGTGAAGTAATTTT 60.129 38.462 0.00 0.00 35.01 1.82
299 300 5.347907 CGCCTCGTTCTTAGTGAAGTAATTT 59.652 40.000 0.00 0.00 35.01 1.82
300 301 4.863131 CGCCTCGTTCTTAGTGAAGTAATT 59.137 41.667 0.00 0.00 35.01 1.40
301 302 4.157289 TCGCCTCGTTCTTAGTGAAGTAAT 59.843 41.667 0.00 0.00 35.01 1.89
302 303 3.503363 TCGCCTCGTTCTTAGTGAAGTAA 59.497 43.478 0.00 0.00 35.01 2.24
303 304 3.076621 TCGCCTCGTTCTTAGTGAAGTA 58.923 45.455 0.00 0.00 35.01 2.24
304 305 1.884579 TCGCCTCGTTCTTAGTGAAGT 59.115 47.619 0.00 0.00 35.01 3.01
305 306 2.631418 TCGCCTCGTTCTTAGTGAAG 57.369 50.000 0.00 0.00 35.01 3.02
306 307 3.508762 GAATCGCCTCGTTCTTAGTGAA 58.491 45.455 0.00 0.00 0.00 3.18
307 308 2.477357 CGAATCGCCTCGTTCTTAGTGA 60.477 50.000 0.00 0.00 34.08 3.41
308 309 1.846782 CGAATCGCCTCGTTCTTAGTG 59.153 52.381 0.00 0.00 34.08 2.74
309 310 1.202268 CCGAATCGCCTCGTTCTTAGT 60.202 52.381 0.00 0.00 37.11 2.24
310 311 1.202268 ACCGAATCGCCTCGTTCTTAG 60.202 52.381 0.00 0.00 37.11 2.18
311 312 0.813184 ACCGAATCGCCTCGTTCTTA 59.187 50.000 0.00 0.00 37.11 2.10
312 313 0.736325 CACCGAATCGCCTCGTTCTT 60.736 55.000 0.00 0.00 37.11 2.52
313 314 1.153823 CACCGAATCGCCTCGTTCT 60.154 57.895 0.00 0.00 37.11 3.01
314 315 2.799540 GCACCGAATCGCCTCGTTC 61.800 63.158 0.00 0.00 37.11 3.95
315 316 2.813908 GCACCGAATCGCCTCGTT 60.814 61.111 0.00 0.00 37.11 3.85
316 317 4.814294 GGCACCGAATCGCCTCGT 62.814 66.667 0.00 0.00 45.29 4.18
321 322 1.491505 GAGCTTAGGCACCGAATCGC 61.492 60.000 0.00 0.00 41.70 4.58
322 323 0.179111 TGAGCTTAGGCACCGAATCG 60.179 55.000 0.00 0.00 41.70 3.34
323 324 1.576356 CTGAGCTTAGGCACCGAATC 58.424 55.000 0.00 0.00 41.70 2.52
324 325 0.462759 GCTGAGCTTAGGCACCGAAT 60.463 55.000 7.72 0.00 41.70 3.34
325 326 1.079127 GCTGAGCTTAGGCACCGAA 60.079 57.895 7.72 0.00 41.70 4.30
326 327 1.984570 AGCTGAGCTTAGGCACCGA 60.985 57.895 0.00 0.00 41.70 4.69
327 328 1.812922 CAGCTGAGCTTAGGCACCG 60.813 63.158 8.42 0.00 36.40 4.94
328 329 2.111582 GCAGCTGAGCTTAGGCACC 61.112 63.158 20.43 0.00 36.40 5.01
329 330 1.376424 TGCAGCTGAGCTTAGGCAC 60.376 57.895 20.43 0.00 36.40 5.01
330 331 1.376424 GTGCAGCTGAGCTTAGGCA 60.376 57.895 20.43 13.11 36.40 4.75
331 332 2.111582 GGTGCAGCTGAGCTTAGGC 61.112 63.158 20.43 6.22 36.40 3.93
332 333 1.812922 CGGTGCAGCTGAGCTTAGG 60.813 63.158 20.43 0.00 36.40 2.69
333 334 2.459442 GCGGTGCAGCTGAGCTTAG 61.459 63.158 20.43 0.05 36.40 2.18
334 335 2.434884 GCGGTGCAGCTGAGCTTA 60.435 61.111 20.43 0.00 36.40 3.09
338 339 3.561213 CATCGCGGTGCAGCTGAG 61.561 66.667 20.43 9.46 34.40 3.35
343 344 3.190849 CTGTCCATCGCGGTGCAG 61.191 66.667 15.51 13.27 34.39 4.41
344 345 2.723586 TTTCTGTCCATCGCGGTGCA 62.724 55.000 15.51 6.68 35.57 4.57
345 346 1.573829 TTTTCTGTCCATCGCGGTGC 61.574 55.000 15.51 1.18 35.57 5.01
346 347 1.086696 ATTTTCTGTCCATCGCGGTG 58.913 50.000 13.72 13.72 35.57 4.94
347 348 1.737793 GAATTTTCTGTCCATCGCGGT 59.262 47.619 6.13 0.00 35.57 5.68
348 349 1.737236 TGAATTTTCTGTCCATCGCGG 59.263 47.619 6.13 0.00 0.00 6.46
349 350 2.159430 TGTGAATTTTCTGTCCATCGCG 59.841 45.455 0.00 0.00 0.00 5.87
350 351 3.829886 TGTGAATTTTCTGTCCATCGC 57.170 42.857 0.00 0.00 0.00 4.58
351 352 5.518812 TGTTTGTGAATTTTCTGTCCATCG 58.481 37.500 0.00 0.00 0.00 3.84
352 353 7.951530 ATTGTTTGTGAATTTTCTGTCCATC 57.048 32.000 0.00 0.00 0.00 3.51
353 354 8.641541 AGTATTGTTTGTGAATTTTCTGTCCAT 58.358 29.630 0.00 0.00 0.00 3.41
354 355 8.006298 AGTATTGTTTGTGAATTTTCTGTCCA 57.994 30.769 0.00 0.00 0.00 4.02
355 356 9.612620 CTAGTATTGTTTGTGAATTTTCTGTCC 57.387 33.333 0.00 0.00 0.00 4.02
405 406 4.230657 CCAAATTATCGTCCACGCAAAAA 58.769 39.130 0.00 0.00 39.60 1.94
406 407 3.253677 ACCAAATTATCGTCCACGCAAAA 59.746 39.130 0.00 0.00 39.60 2.44
407 408 2.814919 ACCAAATTATCGTCCACGCAAA 59.185 40.909 0.00 0.00 39.60 3.68
408 409 2.160615 CACCAAATTATCGTCCACGCAA 59.839 45.455 0.00 0.00 39.60 4.85
409 410 1.735018 CACCAAATTATCGTCCACGCA 59.265 47.619 0.00 0.00 39.60 5.24
410 411 1.735571 ACACCAAATTATCGTCCACGC 59.264 47.619 0.00 0.00 39.60 5.34
411 412 4.806775 TCATACACCAAATTATCGTCCACG 59.193 41.667 0.00 0.00 41.45 4.94
412 413 6.658831 CATCATACACCAAATTATCGTCCAC 58.341 40.000 0.00 0.00 0.00 4.02
413 414 5.238432 GCATCATACACCAAATTATCGTCCA 59.762 40.000 0.00 0.00 0.00 4.02
414 415 5.614668 CGCATCATACACCAAATTATCGTCC 60.615 44.000 0.00 0.00 0.00 4.79
415 416 5.374080 CGCATCATACACCAAATTATCGTC 58.626 41.667 0.00 0.00 0.00 4.20
416 417 4.319477 GCGCATCATACACCAAATTATCGT 60.319 41.667 0.30 0.00 0.00 3.73
417 418 4.083855 AGCGCATCATACACCAAATTATCG 60.084 41.667 11.47 0.00 0.00 2.92
418 419 5.362556 AGCGCATCATACACCAAATTATC 57.637 39.130 11.47 0.00 0.00 1.75
419 420 4.216257 GGAGCGCATCATACACCAAATTAT 59.784 41.667 11.47 0.00 0.00 1.28
420 421 3.563808 GGAGCGCATCATACACCAAATTA 59.436 43.478 11.47 0.00 0.00 1.40
421 422 2.358898 GGAGCGCATCATACACCAAATT 59.641 45.455 11.47 0.00 0.00 1.82
422 423 1.949525 GGAGCGCATCATACACCAAAT 59.050 47.619 11.47 0.00 0.00 2.32
423 424 1.339535 TGGAGCGCATCATACACCAAA 60.340 47.619 11.47 0.00 0.00 3.28
424 425 0.251634 TGGAGCGCATCATACACCAA 59.748 50.000 11.47 0.00 0.00 3.67
425 426 0.251634 TTGGAGCGCATCATACACCA 59.748 50.000 11.47 2.89 0.00 4.17
426 427 1.378531 TTTGGAGCGCATCATACACC 58.621 50.000 11.47 0.09 0.00 4.16
427 428 3.698029 AATTTGGAGCGCATCATACAC 57.302 42.857 11.47 0.00 0.00 2.90
428 429 3.693578 TGAAATTTGGAGCGCATCATACA 59.306 39.130 11.47 0.00 0.00 2.29
429 430 4.035558 TCTGAAATTTGGAGCGCATCATAC 59.964 41.667 11.47 0.00 0.00 2.39
430 431 4.198530 TCTGAAATTTGGAGCGCATCATA 58.801 39.130 11.47 2.66 0.00 2.15
431 432 3.018856 TCTGAAATTTGGAGCGCATCAT 58.981 40.909 11.47 0.00 0.00 2.45
432 433 2.435422 TCTGAAATTTGGAGCGCATCA 58.565 42.857 11.47 4.01 0.00 3.07
433 434 3.705043 ATCTGAAATTTGGAGCGCATC 57.295 42.857 11.47 4.01 0.00 3.91
434 435 5.779529 ATAATCTGAAATTTGGAGCGCAT 57.220 34.783 11.47 0.00 0.00 4.73
435 436 5.581126 AATAATCTGAAATTTGGAGCGCA 57.419 34.783 11.47 0.00 0.00 6.09
436 437 6.264909 CAAATAATCTGAAATTTGGAGCGC 57.735 37.500 15.64 0.00 38.73 5.92
449 450 7.215789 AGCTACTCAGATGTCCAAATAATCTG 58.784 38.462 5.69 5.69 45.69 2.90
450 451 7.372260 AGCTACTCAGATGTCCAAATAATCT 57.628 36.000 0.00 0.00 0.00 2.40
451 452 8.443953 AAAGCTACTCAGATGTCCAAATAATC 57.556 34.615 0.00 0.00 0.00 1.75
452 453 8.680903 CAAAAGCTACTCAGATGTCCAAATAAT 58.319 33.333 0.00 0.00 0.00 1.28
453 454 7.882791 TCAAAAGCTACTCAGATGTCCAAATAA 59.117 33.333 0.00 0.00 0.00 1.40
454 455 7.394016 TCAAAAGCTACTCAGATGTCCAAATA 58.606 34.615 0.00 0.00 0.00 1.40
455 456 6.240894 TCAAAAGCTACTCAGATGTCCAAAT 58.759 36.000 0.00 0.00 0.00 2.32
456 457 5.620206 TCAAAAGCTACTCAGATGTCCAAA 58.380 37.500 0.00 0.00 0.00 3.28
457 458 5.227569 TCAAAAGCTACTCAGATGTCCAA 57.772 39.130 0.00 0.00 0.00 3.53
458 459 4.890158 TCAAAAGCTACTCAGATGTCCA 57.110 40.909 0.00 0.00 0.00 4.02
459 460 7.849804 TTTATCAAAAGCTACTCAGATGTCC 57.150 36.000 0.00 0.00 0.00 4.02
482 483 7.654022 TGACAGACCCTAAATTTGTCTTTTT 57.346 32.000 6.87 0.00 37.25 1.94
483 484 7.654022 TTGACAGACCCTAAATTTGTCTTTT 57.346 32.000 6.87 0.00 37.25 2.27
484 485 7.654022 TTTGACAGACCCTAAATTTGTCTTT 57.346 32.000 6.87 2.16 37.25 2.52
485 486 7.654022 TTTTGACAGACCCTAAATTTGTCTT 57.346 32.000 6.87 1.20 37.25 3.01
486 487 7.342026 ACTTTTTGACAGACCCTAAATTTGTCT 59.658 33.333 0.00 2.38 39.86 3.41
487 488 7.489160 ACTTTTTGACAGACCCTAAATTTGTC 58.511 34.615 0.00 0.00 38.82 3.18
488 489 7.418337 ACTTTTTGACAGACCCTAAATTTGT 57.582 32.000 0.00 0.00 0.00 2.83
489 490 8.716646 AAACTTTTTGACAGACCCTAAATTTG 57.283 30.769 0.00 0.00 0.00 2.32
490 491 9.811995 GTAAACTTTTTGACAGACCCTAAATTT 57.188 29.630 0.00 0.00 0.00 1.82
491 492 9.197306 AGTAAACTTTTTGACAGACCCTAAATT 57.803 29.630 0.00 0.00 0.00 1.82
492 493 8.762481 AGTAAACTTTTTGACAGACCCTAAAT 57.238 30.769 0.00 0.00 0.00 1.40
493 494 9.856162 ATAGTAAACTTTTTGACAGACCCTAAA 57.144 29.630 0.00 0.00 0.00 1.85
494 495 9.856162 AATAGTAAACTTTTTGACAGACCCTAA 57.144 29.630 0.00 0.00 0.00 2.69
495 496 9.498176 GAATAGTAAACTTTTTGACAGACCCTA 57.502 33.333 0.00 0.00 0.00 3.53
496 497 7.996644 TGAATAGTAAACTTTTTGACAGACCCT 59.003 33.333 0.00 0.00 0.00 4.34
497 498 8.161699 TGAATAGTAAACTTTTTGACAGACCC 57.838 34.615 0.00 0.00 0.00 4.46
498 499 9.612620 CATGAATAGTAAACTTTTTGACAGACC 57.387 33.333 0.00 0.00 0.00 3.85
533 534 8.730680 GCTCTCAGAAAAATACAAAATAGGTCA 58.269 33.333 0.00 0.00 0.00 4.02
534 535 8.951243 AGCTCTCAGAAAAATACAAAATAGGTC 58.049 33.333 0.00 0.00 0.00 3.85
535 536 8.870075 AGCTCTCAGAAAAATACAAAATAGGT 57.130 30.769 0.00 0.00 0.00 3.08
568 569 8.817100 CGCTCTAAATTGTAGATCATTTGTACA 58.183 33.333 0.00 0.00 0.00 2.90
569 570 8.276325 CCGCTCTAAATTGTAGATCATTTGTAC 58.724 37.037 0.00 0.00 0.00 2.90
570 571 8.201464 TCCGCTCTAAATTGTAGATCATTTGTA 58.799 33.333 0.00 0.00 0.00 2.41
571 572 7.011482 GTCCGCTCTAAATTGTAGATCATTTGT 59.989 37.037 0.00 0.00 0.00 2.83
572 573 7.348201 GTCCGCTCTAAATTGTAGATCATTTG 58.652 38.462 0.00 0.00 0.00 2.32
573 574 6.483640 GGTCCGCTCTAAATTGTAGATCATTT 59.516 38.462 0.00 0.00 0.00 2.32
574 575 5.992217 GGTCCGCTCTAAATTGTAGATCATT 59.008 40.000 0.00 0.00 0.00 2.57
575 576 5.305644 AGGTCCGCTCTAAATTGTAGATCAT 59.694 40.000 0.00 0.00 0.00 2.45
576 577 4.649674 AGGTCCGCTCTAAATTGTAGATCA 59.350 41.667 0.00 0.00 0.00 2.92
577 578 5.203060 AGGTCCGCTCTAAATTGTAGATC 57.797 43.478 0.00 0.00 0.00 2.75
578 579 4.649674 TGAGGTCCGCTCTAAATTGTAGAT 59.350 41.667 0.00 0.00 0.00 1.98
579 580 4.021229 TGAGGTCCGCTCTAAATTGTAGA 58.979 43.478 0.00 0.00 0.00 2.59
580 581 4.386867 TGAGGTCCGCTCTAAATTGTAG 57.613 45.455 0.00 0.00 0.00 2.74
581 582 4.693283 CATGAGGTCCGCTCTAAATTGTA 58.307 43.478 0.00 0.00 0.00 2.41
582 583 3.535561 CATGAGGTCCGCTCTAAATTGT 58.464 45.455 0.00 0.00 0.00 2.71
583 584 2.289002 GCATGAGGTCCGCTCTAAATTG 59.711 50.000 0.00 0.00 0.00 2.32
584 585 2.092968 TGCATGAGGTCCGCTCTAAATT 60.093 45.455 0.00 0.00 0.00 1.82
585 586 1.486310 TGCATGAGGTCCGCTCTAAAT 59.514 47.619 0.00 0.00 0.00 1.40
586 587 0.901827 TGCATGAGGTCCGCTCTAAA 59.098 50.000 0.00 0.00 0.00 1.85
587 588 1.069204 GATGCATGAGGTCCGCTCTAA 59.931 52.381 2.46 0.00 0.00 2.10
588 589 0.676184 GATGCATGAGGTCCGCTCTA 59.324 55.000 2.46 0.00 0.00 2.43
589 590 1.332889 TGATGCATGAGGTCCGCTCT 61.333 55.000 2.46 0.00 0.00 4.09
590 591 0.462581 TTGATGCATGAGGTCCGCTC 60.463 55.000 2.46 0.00 0.00 5.03
591 592 0.035152 TTTGATGCATGAGGTCCGCT 60.035 50.000 2.46 0.00 0.00 5.52
592 593 1.027357 ATTTGATGCATGAGGTCCGC 58.973 50.000 2.46 0.00 0.00 5.54
593 594 5.443185 AATAATTTGATGCATGAGGTCCG 57.557 39.130 2.46 0.00 0.00 4.79
594 595 6.703165 GGAAAATAATTTGATGCATGAGGTCC 59.297 38.462 2.46 0.00 0.00 4.46
595 596 7.267128 TGGAAAATAATTTGATGCATGAGGTC 58.733 34.615 2.46 0.00 0.00 3.85
596 597 7.185318 TGGAAAATAATTTGATGCATGAGGT 57.815 32.000 2.46 0.00 0.00 3.85
597 598 7.307751 GCATGGAAAATAATTTGATGCATGAGG 60.308 37.037 2.46 0.00 40.82 3.86
598 599 7.225734 TGCATGGAAAATAATTTGATGCATGAG 59.774 33.333 2.46 0.00 41.51 2.90
599 600 7.048512 TGCATGGAAAATAATTTGATGCATGA 58.951 30.769 2.46 0.00 41.51 3.07
600 601 7.252965 TGCATGGAAAATAATTTGATGCATG 57.747 32.000 2.46 11.85 41.51 4.06
601 602 7.867305 TTGCATGGAAAATAATTTGATGCAT 57.133 28.000 15.40 0.00 43.54 3.96
602 603 7.683437 TTTGCATGGAAAATAATTTGATGCA 57.317 28.000 10.24 12.46 43.01 3.96
676 677 3.578282 CCAGGCTCATTTGTACCCTTTTT 59.422 43.478 0.00 0.00 0.00 1.94
677 678 3.165071 CCAGGCTCATTTGTACCCTTTT 58.835 45.455 0.00 0.00 0.00 2.27
678 679 2.807676 CCAGGCTCATTTGTACCCTTT 58.192 47.619 0.00 0.00 0.00 3.11
679 680 1.616994 GCCAGGCTCATTTGTACCCTT 60.617 52.381 3.29 0.00 0.00 3.95
680 681 0.034089 GCCAGGCTCATTTGTACCCT 60.034 55.000 3.29 0.00 0.00 4.34
681 682 1.037579 GGCCAGGCTCATTTGTACCC 61.038 60.000 12.43 0.00 0.00 3.69
682 683 0.034089 AGGCCAGGCTCATTTGTACC 60.034 55.000 12.43 0.00 0.00 3.34
683 684 2.710096 TAGGCCAGGCTCATTTGTAC 57.290 50.000 12.43 0.00 0.00 2.90
684 685 3.730215 TTTAGGCCAGGCTCATTTGTA 57.270 42.857 12.43 0.00 0.00 2.41
685 686 2.603075 TTTAGGCCAGGCTCATTTGT 57.397 45.000 12.43 0.00 0.00 2.83
686 687 3.959535 TTTTTAGGCCAGGCTCATTTG 57.040 42.857 12.43 0.00 0.00 2.32
710 711 9.498307 CGAATAAAGTTTTGTGGGTGAATATAC 57.502 33.333 0.00 0.00 0.00 1.47
711 712 9.451002 TCGAATAAAGTTTTGTGGGTGAATATA 57.549 29.630 0.00 0.00 0.00 0.86
712 713 8.241367 GTCGAATAAAGTTTTGTGGGTGAATAT 58.759 33.333 0.00 0.00 0.00 1.28
713 714 7.308710 GGTCGAATAAAGTTTTGTGGGTGAATA 60.309 37.037 0.00 0.00 0.00 1.75
714 715 6.443792 GTCGAATAAAGTTTTGTGGGTGAAT 58.556 36.000 0.00 0.00 0.00 2.57
715 716 5.221087 GGTCGAATAAAGTTTTGTGGGTGAA 60.221 40.000 0.00 0.00 0.00 3.18
716 717 4.276431 GGTCGAATAAAGTTTTGTGGGTGA 59.724 41.667 0.00 0.00 0.00 4.02
717 718 4.542735 GGTCGAATAAAGTTTTGTGGGTG 58.457 43.478 0.00 0.00 0.00 4.61
718 719 3.251487 CGGTCGAATAAAGTTTTGTGGGT 59.749 43.478 0.00 0.00 0.00 4.51
719 720 3.365565 CCGGTCGAATAAAGTTTTGTGGG 60.366 47.826 0.00 0.00 0.00 4.61
722 723 6.168389 AGTATCCGGTCGAATAAAGTTTTGT 58.832 36.000 0.00 0.00 0.00 2.83
724 725 6.400568 TGAGTATCCGGTCGAATAAAGTTTT 58.599 36.000 0.00 0.00 0.00 2.43
728 729 6.015027 AGATGAGTATCCGGTCGAATAAAG 57.985 41.667 0.00 0.00 33.64 1.85
733 734 6.401047 AAAATAGATGAGTATCCGGTCGAA 57.599 37.500 0.00 0.00 33.64 3.71
758 759 6.464465 GGAGCAACTCTAGCCAATTCCTTATA 60.464 42.308 0.00 0.00 0.00 0.98
759 760 5.372373 GAGCAACTCTAGCCAATTCCTTAT 58.628 41.667 0.00 0.00 0.00 1.73
765 766 3.009473 TCTTGGAGCAACTCTAGCCAATT 59.991 43.478 0.00 0.00 37.91 2.32
768 769 1.644509 TCTTGGAGCAACTCTAGCCA 58.355 50.000 0.00 0.00 0.00 4.75
774 775 2.680339 GCCACTTATCTTGGAGCAACTC 59.320 50.000 0.00 0.00 36.02 3.01
786 787 7.152645 TCTGTAATTTATCTCCGCCACTTATC 58.847 38.462 0.00 0.00 0.00 1.75
832 833 2.779471 CGCGTGCTTTAAGTTTCGTTTT 59.221 40.909 0.00 0.00 0.00 2.43
844 845 0.676782 AAATAGCCCTCGCGTGCTTT 60.677 50.000 21.35 13.35 41.18 3.51
847 848 1.766143 CTGAAATAGCCCTCGCGTGC 61.766 60.000 5.77 8.03 41.18 5.34
900 902 9.851043 GAATAATATGAGCGTAAGTCAAAGAAC 57.149 33.333 0.00 0.00 41.68 3.01
902 904 7.919091 ACGAATAATATGAGCGTAAGTCAAAGA 59.081 33.333 0.00 0.00 41.68 2.52
916 955 3.508793 GGGGAGGACGACGAATAATATGA 59.491 47.826 0.00 0.00 0.00 2.15
927 966 2.442458 GGAGGAGGGGAGGACGAC 60.442 72.222 0.00 0.00 0.00 4.34
938 977 1.492599 GGAAAATGGGAGGAGGAGGAG 59.507 57.143 0.00 0.00 0.00 3.69
939 978 1.596496 GGAAAATGGGAGGAGGAGGA 58.404 55.000 0.00 0.00 0.00 3.71
940 979 0.181350 CGGAAAATGGGAGGAGGAGG 59.819 60.000 0.00 0.00 0.00 4.30
1518 1583 3.009301 GTCACGGACGAGAAGAAAGAA 57.991 47.619 0.00 0.00 0.00 2.52
1715 1798 3.871737 CGCGCGTCGTGTACTTCG 61.872 66.667 24.19 0.00 32.40 3.79
1993 2096 5.304778 GCCCCATTACAAAGAACAAATGTT 58.695 37.500 0.00 0.00 41.64 2.71
1994 2097 4.262851 GGCCCCATTACAAAGAACAAATGT 60.263 41.667 0.00 0.00 0.00 2.71
2011 2114 2.556559 GGATTCTTTACACAAGGCCCCA 60.557 50.000 0.00 0.00 0.00 4.96
2016 2119 7.396055 TCCTAATTTGGGATTCTTTACACAAGG 59.604 37.037 6.08 0.00 31.04 3.61
2105 2208 1.152777 TCCAACACCAAGGCTGTGG 60.153 57.895 9.48 11.01 44.92 4.17
2151 2254 2.382746 CGTGCTCATGACCACCACG 61.383 63.158 14.19 14.53 42.36 4.94
2179 2286 1.749334 GCCGGATGGAGGTAGGTGAG 61.749 65.000 5.05 0.00 37.49 3.51
2192 2299 4.473520 CTCACAAGGCGGCCGGAT 62.474 66.667 29.38 0.77 0.00 4.18
2296 2403 3.889520 AACGTCTAAATCTGTCTCCCC 57.110 47.619 0.00 0.00 0.00 4.81
2344 2451 3.056322 TCCCTTACTTAAACTCTGACCGC 60.056 47.826 0.00 0.00 0.00 5.68
2374 2481 8.549548 CAAACTATATCTCATTCAGCTGAGTTG 58.450 37.037 17.43 17.81 42.68 3.16
2401 2508 8.095792 GTCATCCTAATGTCATCTGAATGAGAT 58.904 37.037 0.00 0.00 45.21 2.75
2477 2594 1.300156 GCTATCGATCACGCTGCCA 60.300 57.895 0.00 0.00 39.58 4.92
2522 2645 2.548057 CAGCGCACCTAGAAAGAAAACA 59.452 45.455 11.47 0.00 0.00 2.83
2664 2823 7.147846 CCAATTCATAGATGGTTGTAGGCTTTT 60.148 37.037 0.00 0.00 0.00 2.27
2666 2825 5.829924 CCAATTCATAGATGGTTGTAGGCTT 59.170 40.000 0.00 0.00 0.00 4.35
2667 2826 5.132648 TCCAATTCATAGATGGTTGTAGGCT 59.867 40.000 0.00 0.00 35.66 4.58
2741 2900 7.431668 GCGTAATATACTGGCTAAGTACATAGC 59.568 40.741 19.43 19.43 44.20 2.97
2833 2998 3.479006 CTGGAATTACAACAAGCGTTCG 58.521 45.455 0.00 0.00 31.13 3.95
2853 3019 0.317938 GTCGAGACAACACTCACGCT 60.318 55.000 0.00 0.00 36.80 5.07
2924 3092 2.124693 CCACAACACCCCACACACC 61.125 63.158 0.00 0.00 0.00 4.16
3000 3168 3.041940 AGCCCTTTTGTCGCGACG 61.042 61.111 31.88 18.50 0.00 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.