Multiple sequence alignment - TraesCS5B01G066500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G066500 chr5B 100.000 3099 0 0 1 3099 74637625 74640723 0.000000e+00 5723.0
1 TraesCS5B01G066500 chr5B 100.000 1361 0 0 3441 4801 74641065 74642425 0.000000e+00 2514.0
2 TraesCS5B01G066500 chr5B 90.623 1397 70 18 3441 4801 692285219 692286590 0.000000e+00 1797.0
3 TraesCS5B01G066500 chr5B 93.247 1007 41 11 2103 3099 692283481 692284470 0.000000e+00 1458.0
4 TraesCS5B01G066500 chr5B 96.377 138 3 2 923 1060 65534898 65534763 4.830000e-55 226.0
5 TraesCS5B01G066500 chr4A 96.037 2044 62 11 1061 3099 2644318 2642289 0.000000e+00 3308.0
6 TraesCS5B01G066500 chr4A 95.314 1387 39 4 3441 4801 2630184 2631570 0.000000e+00 2178.0
7 TraesCS5B01G066500 chr4A 98.507 134 2 0 927 1060 728114290 728114423 2.230000e-58 237.0
8 TraesCS5B01G066500 chr7A 95.984 2042 62 4 1061 3099 100756027 100754003 0.000000e+00 3299.0
9 TraesCS5B01G066500 chr7A 96.512 2007 46 6 1061 3055 2773074 2775068 0.000000e+00 3297.0
10 TraesCS5B01G066500 chr7A 95.199 2062 58 6 1061 3099 732102922 732100879 0.000000e+00 3221.0
11 TraesCS5B01G066500 chr7A 92.385 1799 70 25 1337 3099 652923890 652925657 0.000000e+00 2501.0
12 TraesCS5B01G066500 chr7A 93.832 1378 32 10 3441 4801 2775792 2777133 0.000000e+00 2025.0
13 TraesCS5B01G066500 chr7A 91.873 1415 49 26 3441 4801 732100518 732099116 0.000000e+00 1916.0
14 TraesCS5B01G066500 chr7A 93.494 1245 41 16 3585 4801 100753265 100752033 0.000000e+00 1814.0
15 TraesCS5B01G066500 chr7A 90.620 693 25 21 3441 4103 652926601 652927283 0.000000e+00 883.0
16 TraesCS5B01G066500 chr7A 78.322 143 24 6 2964 3099 2774913 2775055 8.560000e-13 86.1
17 TraesCS5B01G066500 chr7A 96.078 51 2 0 3049 3099 100754110 100754060 3.080000e-12 84.2
18 TraesCS5B01G066500 chr1A 94.665 2062 58 7 1061 3099 1315709 1317741 0.000000e+00 3151.0
19 TraesCS5B01G066500 chr1A 94.523 2063 62 9 1061 3099 534528156 534526121 0.000000e+00 3136.0
20 TraesCS5B01G066500 chr1A 93.525 1390 43 19 3441 4801 534525385 534524014 0.000000e+00 2025.0
21 TraesCS5B01G066500 chr1A 89.938 805 39 21 3489 4263 1320509 1321301 0.000000e+00 1000.0
22 TraesCS5B01G066500 chr3D 93.976 2075 70 18 1061 3099 595953694 595951639 0.000000e+00 3088.0
23 TraesCS5B01G066500 chr3D 93.652 2032 71 19 1061 3059 114397630 114395624 0.000000e+00 2985.0
24 TraesCS5B01G066500 chr3D 94.301 965 44 7 1061 2021 66252767 66253724 0.000000e+00 1467.0
25 TraesCS5B01G066500 chr2D 93.874 2073 68 19 1061 3099 459830858 459832905 0.000000e+00 3070.0
26 TraesCS5B01G066500 chr2D 92.590 1255 38 19 3594 4801 155547175 155545929 0.000000e+00 1751.0
27 TraesCS5B01G066500 chr2D 92.504 1254 39 22 3594 4801 11086986 11085742 0.000000e+00 1744.0
28 TraesCS5B01G066500 chr2D 91.410 943 32 22 3441 4343 632022480 632021547 0.000000e+00 1247.0
29 TraesCS5B01G066500 chr2D 88.762 614 38 7 3940 4522 25090207 25090820 0.000000e+00 723.0
30 TraesCS5B01G066500 chr2D 97.175 177 4 1 3441 3616 632022529 632022353 1.010000e-76 298.0
31 TraesCS5B01G066500 chr4D 93.388 2072 64 14 1061 3099 414636101 414634070 0.000000e+00 3000.0
32 TraesCS5B01G066500 chr4D 92.619 1409 47 24 3441 4801 414633320 414631921 0.000000e+00 1973.0
33 TraesCS5B01G066500 chr4D 92.671 1378 41 21 3472 4801 469104437 469105802 0.000000e+00 1930.0
34 TraesCS5B01G066500 chr4D 93.768 1059 38 5 1061 2096 469101972 469103025 0.000000e+00 1565.0
35 TraesCS5B01G066500 chr4D 97.740 177 3 1 3441 3616 469104133 469104309 2.170000e-78 303.0
36 TraesCS5B01G066500 chr4D 97.175 177 3 2 3441 3616 414633369 414633194 1.010000e-76 298.0
37 TraesCS5B01G066500 chr6D 92.635 1480 69 20 1061 2524 445311949 445313404 0.000000e+00 2093.0
38 TraesCS5B01G066500 chr6D 89.658 1402 58 26 3447 4801 81147937 81146576 0.000000e+00 1705.0
39 TraesCS5B01G066500 chr6D 88.708 859 34 25 3495 4308 445322630 445323470 0.000000e+00 990.0
40 TraesCS5B01G066500 chr5D 92.929 1400 39 21 3441 4801 384159486 384160864 0.000000e+00 1982.0
41 TraesCS5B01G066500 chr5D 95.064 628 25 2 4177 4801 58669833 58669209 0.000000e+00 983.0
42 TraesCS5B01G066500 chr5D 95.876 291 12 0 1806 2096 384157271 384157561 5.620000e-129 472.0
43 TraesCS5B01G066500 chr5D 82.560 539 47 16 9 524 68697582 68698096 9.550000e-117 431.0
44 TraesCS5B01G066500 chr5D 90.310 258 11 8 519 773 68698118 68698364 4.630000e-85 326.0
45 TraesCS5B01G066500 chr1D 92.051 1409 56 21 3441 4801 414456578 414455178 0.000000e+00 1930.0
46 TraesCS5B01G066500 chr1D 93.957 1059 39 8 1061 2096 276513480 276512424 0.000000e+00 1578.0
47 TraesCS5B01G066500 chr1D 93.484 1059 41 6 1061 2096 414481957 414480904 0.000000e+00 1548.0
48 TraesCS5B01G066500 chr1D 91.767 911 28 21 3441 4312 276510722 276509820 0.000000e+00 1223.0
49 TraesCS5B01G066500 chr1D 97.740 177 3 1 3441 3616 276510771 276510595 2.170000e-78 303.0
50 TraesCS5B01G066500 chr1D 97.740 177 3 1 3441 3616 276511302 276511126 2.170000e-78 303.0
51 TraesCS5B01G066500 chr7B 91.577 1401 63 21 3441 4801 598646748 598645363 0.000000e+00 1882.0
52 TraesCS5B01G066500 chr7B 91.006 1401 71 21 3441 4801 598614489 598613104 0.000000e+00 1838.0
53 TraesCS5B01G066500 chr7B 90.728 1402 81 20 3441 4801 644943254 644941861 0.000000e+00 1823.0
54 TraesCS5B01G066500 chr7B 87.789 1425 80 34 3443 4801 451087466 451088862 0.000000e+00 1581.0
55 TraesCS5B01G066500 chr7B 94.340 1007 32 8 2103 3099 598616266 598615275 0.000000e+00 1520.0
56 TraesCS5B01G066500 chr7B 88.268 912 57 25 3441 4313 641567530 641568430 0.000000e+00 1046.0
57 TraesCS5B01G066500 chr7D 94.393 856 40 4 1060 1912 510435083 510434233 0.000000e+00 1308.0
58 TraesCS5B01G066500 chr7D 99.237 131 1 0 929 1059 321045459 321045589 2.230000e-58 237.0
59 TraesCS5B01G066500 chr5A 83.104 799 77 29 9 763 59600452 59601236 0.000000e+00 675.0
60 TraesCS5B01G066500 chr4B 98.529 136 1 1 925 1060 649682317 649682183 6.210000e-59 239.0
61 TraesCS5B01G066500 chr6B 99.237 131 0 1 931 1060 641300853 641300983 8.030000e-58 235.0
62 TraesCS5B01G066500 chr6B 95.745 141 5 1 921 1060 154847716 154847856 4.830000e-55 226.0
63 TraesCS5B01G066500 chr2B 97.794 136 2 1 925 1060 55858090 55857956 2.890000e-57 233.0
64 TraesCS5B01G066500 chr2B 79.710 138 21 6 3 137 490870330 490870197 5.120000e-15 93.5
65 TraesCS5B01G066500 chr1B 97.080 137 3 1 924 1060 463667341 463667206 3.740000e-56 230.0
66 TraesCS5B01G066500 chr1B 95.683 139 6 0 922 1060 41703517 41703379 1.740000e-54 224.0
67 TraesCS5B01G066500 chr3A 100.000 33 0 0 75 107 484579168 484579136 1.440000e-05 62.1
68 TraesCS5B01G066500 chr3A 94.737 38 1 1 70 107 486594356 486594392 1.870000e-04 58.4
69 TraesCS5B01G066500 chr2A 100.000 31 0 0 77 107 757977665 757977635 1.870000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G066500 chr5B 74637625 74642425 4800 False 4118.50 5723 100.000000 1 4801 2 chr5B.!!$F1 4800
1 TraesCS5B01G066500 chr5B 692283481 692286590 3109 False 1627.50 1797 91.935000 2103 4801 2 chr5B.!!$F2 2698
2 TraesCS5B01G066500 chr4A 2642289 2644318 2029 True 3308.00 3308 96.037000 1061 3099 1 chr4A.!!$R1 2038
3 TraesCS5B01G066500 chr4A 2630184 2631570 1386 False 2178.00 2178 95.314000 3441 4801 1 chr4A.!!$F1 1360
4 TraesCS5B01G066500 chr7A 732099116 732102922 3806 True 2568.50 3221 93.536000 1061 4801 2 chr7A.!!$R2 3740
5 TraesCS5B01G066500 chr7A 2773074 2777133 4059 False 1802.70 3297 89.555333 1061 4801 3 chr7A.!!$F1 3740
6 TraesCS5B01G066500 chr7A 100752033 100756027 3994 True 1732.40 3299 95.185333 1061 4801 3 chr7A.!!$R1 3740
7 TraesCS5B01G066500 chr7A 652923890 652927283 3393 False 1692.00 2501 91.502500 1337 4103 2 chr7A.!!$F2 2766
8 TraesCS5B01G066500 chr1A 534524014 534528156 4142 True 2580.50 3136 94.024000 1061 4801 2 chr1A.!!$R1 3740
9 TraesCS5B01G066500 chr1A 1315709 1321301 5592 False 2075.50 3151 92.301500 1061 4263 2 chr1A.!!$F1 3202
10 TraesCS5B01G066500 chr3D 595951639 595953694 2055 True 3088.00 3088 93.976000 1061 3099 1 chr3D.!!$R2 2038
11 TraesCS5B01G066500 chr3D 114395624 114397630 2006 True 2985.00 2985 93.652000 1061 3059 1 chr3D.!!$R1 1998
12 TraesCS5B01G066500 chr3D 66252767 66253724 957 False 1467.00 1467 94.301000 1061 2021 1 chr3D.!!$F1 960
13 TraesCS5B01G066500 chr2D 459830858 459832905 2047 False 3070.00 3070 93.874000 1061 3099 1 chr2D.!!$F2 2038
14 TraesCS5B01G066500 chr2D 155545929 155547175 1246 True 1751.00 1751 92.590000 3594 4801 1 chr2D.!!$R2 1207
15 TraesCS5B01G066500 chr2D 11085742 11086986 1244 True 1744.00 1744 92.504000 3594 4801 1 chr2D.!!$R1 1207
16 TraesCS5B01G066500 chr2D 632021547 632022529 982 True 772.50 1247 94.292500 3441 4343 2 chr2D.!!$R3 902
17 TraesCS5B01G066500 chr2D 25090207 25090820 613 False 723.00 723 88.762000 3940 4522 1 chr2D.!!$F1 582
18 TraesCS5B01G066500 chr4D 414631921 414636101 4180 True 1757.00 3000 94.394000 1061 4801 3 chr4D.!!$R1 3740
19 TraesCS5B01G066500 chr4D 469101972 469105802 3830 False 1266.00 1930 94.726333 1061 4801 3 chr4D.!!$F1 3740
20 TraesCS5B01G066500 chr6D 445311949 445313404 1455 False 2093.00 2093 92.635000 1061 2524 1 chr6D.!!$F1 1463
21 TraesCS5B01G066500 chr6D 81146576 81147937 1361 True 1705.00 1705 89.658000 3447 4801 1 chr6D.!!$R1 1354
22 TraesCS5B01G066500 chr6D 445322630 445323470 840 False 990.00 990 88.708000 3495 4308 1 chr6D.!!$F2 813
23 TraesCS5B01G066500 chr5D 384157271 384160864 3593 False 1227.00 1982 94.402500 1806 4801 2 chr5D.!!$F2 2995
24 TraesCS5B01G066500 chr5D 58669209 58669833 624 True 983.00 983 95.064000 4177 4801 1 chr5D.!!$R1 624
25 TraesCS5B01G066500 chr5D 68697582 68698364 782 False 378.50 431 86.435000 9 773 2 chr5D.!!$F1 764
26 TraesCS5B01G066500 chr1D 414455178 414456578 1400 True 1930.00 1930 92.051000 3441 4801 1 chr1D.!!$R1 1360
27 TraesCS5B01G066500 chr1D 414480904 414481957 1053 True 1548.00 1548 93.484000 1061 2096 1 chr1D.!!$R2 1035
28 TraesCS5B01G066500 chr1D 276509820 276513480 3660 True 851.75 1578 95.301000 1061 4312 4 chr1D.!!$R3 3251
29 TraesCS5B01G066500 chr7B 598645363 598646748 1385 True 1882.00 1882 91.577000 3441 4801 1 chr7B.!!$R1 1360
30 TraesCS5B01G066500 chr7B 644941861 644943254 1393 True 1823.00 1823 90.728000 3441 4801 1 chr7B.!!$R2 1360
31 TraesCS5B01G066500 chr7B 598613104 598616266 3162 True 1679.00 1838 92.673000 2103 4801 2 chr7B.!!$R3 2698
32 TraesCS5B01G066500 chr7B 451087466 451088862 1396 False 1581.00 1581 87.789000 3443 4801 1 chr7B.!!$F1 1358
33 TraesCS5B01G066500 chr7B 641567530 641568430 900 False 1046.00 1046 88.268000 3441 4313 1 chr7B.!!$F2 872
34 TraesCS5B01G066500 chr7D 510434233 510435083 850 True 1308.00 1308 94.393000 1060 1912 1 chr7D.!!$R1 852
35 TraesCS5B01G066500 chr5A 59600452 59601236 784 False 675.00 675 83.104000 9 763 1 chr5A.!!$F1 754

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.036306 AACTAAACTGGCCACCCTCG 59.964 55.0 0.00 0.00 0.00 4.63 F
185 186 0.037590 TCCATTTCCCGTGAACCTGG 59.962 55.0 2.97 2.97 35.94 4.45 F
888 946 0.179100 CACGCGGAGGACTCATCATT 60.179 55.0 12.47 0.00 0.00 2.57 F
1661 1743 0.250467 CTCTGGTGTTGGTGAGGTGG 60.250 60.0 0.00 0.00 0.00 4.61 F
2326 2478 0.457035 AAGCAGCTGTGGTGTTGTTG 59.543 50.0 16.64 0.00 33.61 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1732 0.108585 ACACATCACCACCACCTCAC 59.891 55.000 0.00 0.0 0.00 3.51 R
1661 1743 0.806868 CCATGCTCACACATCACCAC 59.193 55.000 0.00 0.0 0.00 4.16 R
2430 2582 1.536940 TGTGGACAAGTGATGCATGG 58.463 50.000 2.46 0.0 0.00 3.66 R
2621 2782 3.213264 CATCCATTGCACCCAGCC 58.787 61.111 0.00 0.0 44.83 4.85 R
4007 11462 2.972713 AGAGTTGCAGGTAGTGGAAGAA 59.027 45.455 0.00 0.0 37.13 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 1.131126 CCATGCTCGCCAACTAAACTG 59.869 52.381 0.00 0.00 0.00 3.16
58 59 0.036306 AACTAAACTGGCCACCCTCG 59.964 55.000 0.00 0.00 0.00 4.63
63 64 2.046892 CTGGCCACCCTCGACAAG 60.047 66.667 0.00 0.00 0.00 3.16
64 65 4.329545 TGGCCACCCTCGACAAGC 62.330 66.667 0.00 0.00 0.00 4.01
65 66 4.329545 GGCCACCCTCGACAAGCA 62.330 66.667 0.00 0.00 0.00 3.91
67 68 1.896660 GCCACCCTCGACAAGCAAA 60.897 57.895 0.00 0.00 0.00 3.68
68 69 1.949257 CCACCCTCGACAAGCAAAC 59.051 57.895 0.00 0.00 0.00 2.93
75 76 3.044986 CCTCGACAAGCAAACATTTGTG 58.955 45.455 6.24 0.68 40.24 3.33
107 108 5.689961 ACGTTTGATTTGTCATGCCTAAAAC 59.310 36.000 0.00 0.00 0.00 2.43
108 109 5.118510 CGTTTGATTTGTCATGCCTAAAACC 59.881 40.000 0.00 0.00 0.00 3.27
110 111 3.513515 TGATTTGTCATGCCTAAAACCCC 59.486 43.478 0.00 0.00 0.00 4.95
121 122 0.945813 TAAAACCCCGACGTTTGCTG 59.054 50.000 0.00 0.00 36.12 4.41
122 123 2.344521 AAAACCCCGACGTTTGCTGC 62.345 55.000 0.00 0.00 36.12 5.25
129 130 1.665679 CCGACGTTTGCTGCATATTCT 59.334 47.619 1.84 0.00 0.00 2.40
153 154 4.822350 GGTCCTATTATCCTTTTGAGGTGC 59.178 45.833 0.00 0.00 0.00 5.01
155 156 5.297029 GTCCTATTATCCTTTTGAGGTGCAC 59.703 44.000 8.80 8.80 0.00 4.57
185 186 0.037590 TCCATTTCCCGTGAACCTGG 59.962 55.000 2.97 2.97 35.94 4.45
187 188 1.674322 ATTTCCCGTGAACCTGGCG 60.674 57.895 0.00 0.00 0.00 5.69
270 271 9.265862 ACTATGGTCCTAGTAGTACGATATACT 57.734 37.037 0.00 0.00 36.28 2.12
271 272 9.531942 CTATGGTCCTAGTAGTACGATATACTG 57.468 40.741 0.00 0.00 34.21 2.74
272 273 7.308450 TGGTCCTAGTAGTACGATATACTGT 57.692 40.000 0.00 0.00 34.21 3.55
273 274 8.422577 TGGTCCTAGTAGTACGATATACTGTA 57.577 38.462 0.00 0.00 34.21 2.74
321 328 2.511218 ACGTATGTAGTCCAGGGTAGGA 59.489 50.000 0.00 0.00 34.64 2.94
369 376 3.858868 GACTCAAGACGTGCCGCCA 62.859 63.158 0.00 0.00 0.00 5.69
411 418 3.563808 AGTCAAGAAGTATTGCGTGCAAA 59.436 39.130 11.75 0.00 39.55 3.68
446 465 8.180165 AGATAGATGAGAACAACCCCAGATATA 58.820 37.037 0.00 0.00 0.00 0.86
466 485 0.228742 CGCACGGACGCAACATATAC 59.771 55.000 0.00 0.00 0.00 1.47
467 486 1.567504 GCACGGACGCAACATATACT 58.432 50.000 0.00 0.00 0.00 2.12
468 487 1.521423 GCACGGACGCAACATATACTC 59.479 52.381 0.00 0.00 0.00 2.59
469 488 2.124903 CACGGACGCAACATATACTCC 58.875 52.381 0.00 0.00 0.00 3.85
470 489 1.752498 ACGGACGCAACATATACTCCA 59.248 47.619 0.00 0.00 0.00 3.86
471 490 2.364324 ACGGACGCAACATATACTCCAT 59.636 45.455 0.00 0.00 0.00 3.41
472 491 2.987149 CGGACGCAACATATACTCCATC 59.013 50.000 0.00 0.00 0.00 3.51
485 513 2.682594 ACTCCATCAGCTAGCATGGTA 58.317 47.619 25.52 15.41 40.59 3.25
529 584 2.351447 CCATCCAGGCACTATACGTACG 60.351 54.545 15.01 15.01 36.02 3.67
632 687 2.477189 CGTTGCACGGACAAGAAACTTT 60.477 45.455 0.00 0.00 38.08 2.66
633 688 3.242478 CGTTGCACGGACAAGAAACTTTA 60.242 43.478 0.00 0.00 38.08 1.85
723 781 2.165437 CCCAGTAGCTCTCAGACTTGTC 59.835 54.545 0.00 0.00 0.00 3.18
727 785 2.300956 AGCTCTCAGACTTGTCTCCA 57.699 50.000 0.00 0.00 0.00 3.86
763 821 1.234821 GGATGCTTTGTGTCGTTCCA 58.765 50.000 0.00 0.00 0.00 3.53
767 825 4.083003 GGATGCTTTGTGTCGTTCCATTAA 60.083 41.667 0.00 0.00 0.00 1.40
768 826 5.393027 GGATGCTTTGTGTCGTTCCATTAAT 60.393 40.000 0.00 0.00 0.00 1.40
769 827 6.183360 GGATGCTTTGTGTCGTTCCATTAATA 60.183 38.462 0.00 0.00 0.00 0.98
770 828 5.933790 TGCTTTGTGTCGTTCCATTAATAC 58.066 37.500 0.00 0.00 0.00 1.89
772 830 6.205853 TGCTTTGTGTCGTTCCATTAATACTT 59.794 34.615 0.00 0.00 0.00 2.24
773 831 7.081976 GCTTTGTGTCGTTCCATTAATACTTT 58.918 34.615 0.00 0.00 0.00 2.66
774 832 7.060633 GCTTTGTGTCGTTCCATTAATACTTTG 59.939 37.037 0.00 0.00 0.00 2.77
775 833 6.489127 TGTGTCGTTCCATTAATACTTTGG 57.511 37.500 0.00 0.00 0.00 3.28
776 834 6.231951 TGTGTCGTTCCATTAATACTTTGGA 58.768 36.000 0.00 0.00 37.76 3.53
777 835 6.711194 TGTGTCGTTCCATTAATACTTTGGAA 59.289 34.615 3.79 3.79 45.00 3.53
782 840 4.528920 TCCATTAATACTTTGGAACCCGG 58.471 43.478 0.00 0.00 36.62 5.73
783 841 3.067601 CCATTAATACTTTGGAACCCGGC 59.932 47.826 0.00 0.00 31.94 6.13
784 842 2.423446 TAATACTTTGGAACCCGGCC 57.577 50.000 0.00 0.00 0.00 6.13
785 843 0.702316 AATACTTTGGAACCCGGCCT 59.298 50.000 0.00 0.00 0.00 5.19
786 844 0.255033 ATACTTTGGAACCCGGCCTC 59.745 55.000 0.00 0.00 0.00 4.70
787 845 0.838987 TACTTTGGAACCCGGCCTCT 60.839 55.000 0.00 0.00 0.00 3.69
788 846 1.074951 CTTTGGAACCCGGCCTCTT 59.925 57.895 0.00 0.00 0.00 2.85
789 847 1.228429 TTTGGAACCCGGCCTCTTG 60.228 57.895 0.00 0.00 0.00 3.02
790 848 2.706952 TTTGGAACCCGGCCTCTTGG 62.707 60.000 0.00 0.00 0.00 3.61
791 849 3.647771 GGAACCCGGCCTCTTGGT 61.648 66.667 0.00 0.00 35.27 3.67
792 850 2.046217 GAACCCGGCCTCTTGGTC 60.046 66.667 0.00 0.00 35.27 4.02
798 856 4.857251 GGCCTCTTGGTCGTATGG 57.143 61.111 0.00 0.00 35.27 2.74
799 857 2.208527 GGCCTCTTGGTCGTATGGA 58.791 57.895 0.00 0.00 35.27 3.41
800 858 0.539986 GGCCTCTTGGTCGTATGGAA 59.460 55.000 0.00 0.00 35.27 3.53
801 859 1.065709 GGCCTCTTGGTCGTATGGAAA 60.066 52.381 0.00 0.00 35.27 3.13
802 860 2.280628 GCCTCTTGGTCGTATGGAAAG 58.719 52.381 0.00 0.00 35.27 2.62
803 861 2.093658 GCCTCTTGGTCGTATGGAAAGA 60.094 50.000 0.00 0.00 35.27 2.52
804 862 3.618997 GCCTCTTGGTCGTATGGAAAGAA 60.619 47.826 0.00 0.00 35.27 2.52
805 863 4.575885 CCTCTTGGTCGTATGGAAAGAAA 58.424 43.478 0.00 0.00 0.00 2.52
806 864 4.631813 CCTCTTGGTCGTATGGAAAGAAAG 59.368 45.833 0.00 0.00 0.00 2.62
807 865 5.223449 TCTTGGTCGTATGGAAAGAAAGT 57.777 39.130 0.00 0.00 0.00 2.66
808 866 4.994852 TCTTGGTCGTATGGAAAGAAAGTG 59.005 41.667 0.00 0.00 0.00 3.16
809 867 4.345859 TGGTCGTATGGAAAGAAAGTGT 57.654 40.909 0.00 0.00 0.00 3.55
810 868 4.312443 TGGTCGTATGGAAAGAAAGTGTC 58.688 43.478 0.00 0.00 0.00 3.67
811 869 4.202274 TGGTCGTATGGAAAGAAAGTGTCA 60.202 41.667 0.00 0.00 0.00 3.58
812 870 4.151867 GGTCGTATGGAAAGAAAGTGTCAC 59.848 45.833 0.00 0.00 0.00 3.67
813 871 4.748102 GTCGTATGGAAAGAAAGTGTCACA 59.252 41.667 5.62 0.00 0.00 3.58
814 872 4.748102 TCGTATGGAAAGAAAGTGTCACAC 59.252 41.667 0.00 0.00 34.10 3.82
815 873 4.084013 CGTATGGAAAGAAAGTGTCACACC 60.084 45.833 3.66 0.00 34.49 4.16
816 874 3.644966 TGGAAAGAAAGTGTCACACCT 57.355 42.857 3.66 0.00 34.49 4.00
817 875 4.764050 TGGAAAGAAAGTGTCACACCTA 57.236 40.909 3.66 0.00 34.49 3.08
818 876 5.105567 TGGAAAGAAAGTGTCACACCTAA 57.894 39.130 3.66 0.00 34.49 2.69
819 877 4.879545 TGGAAAGAAAGTGTCACACCTAAC 59.120 41.667 3.66 0.00 34.49 2.34
820 878 4.275196 GGAAAGAAAGTGTCACACCTAACC 59.725 45.833 3.66 0.00 34.49 2.85
821 879 4.497291 AAGAAAGTGTCACACCTAACCA 57.503 40.909 3.66 0.00 34.49 3.67
822 880 4.073293 AGAAAGTGTCACACCTAACCAG 57.927 45.455 3.66 0.00 34.49 4.00
823 881 2.256117 AAGTGTCACACCTAACCAGC 57.744 50.000 3.66 0.00 34.49 4.85
824 882 0.396811 AGTGTCACACCTAACCAGCC 59.603 55.000 3.66 0.00 34.49 4.85
825 883 0.396811 GTGTCACACCTAACCAGCCT 59.603 55.000 0.00 0.00 0.00 4.58
826 884 0.396435 TGTCACACCTAACCAGCCTG 59.604 55.000 0.00 0.00 0.00 4.85
827 885 0.685097 GTCACACCTAACCAGCCTGA 59.315 55.000 0.00 0.00 0.00 3.86
828 886 1.071699 GTCACACCTAACCAGCCTGAA 59.928 52.381 0.00 0.00 0.00 3.02
829 887 1.071699 TCACACCTAACCAGCCTGAAC 59.928 52.381 0.00 0.00 0.00 3.18
830 888 0.400594 ACACCTAACCAGCCTGAACC 59.599 55.000 0.00 0.00 0.00 3.62
831 889 0.322546 CACCTAACCAGCCTGAACCC 60.323 60.000 0.00 0.00 0.00 4.11
832 890 1.078426 CCTAACCAGCCTGAACCCG 60.078 63.158 0.00 0.00 0.00 5.28
833 891 1.745489 CTAACCAGCCTGAACCCGC 60.745 63.158 0.00 0.00 0.00 6.13
834 892 3.599285 TAACCAGCCTGAACCCGCG 62.599 63.158 0.00 0.00 0.00 6.46
861 919 3.518998 GCATGGCTGGCAGCTCAG 61.519 66.667 35.73 25.38 41.99 3.35
862 920 2.829003 CATGGCTGGCAGCTCAGG 60.829 66.667 35.73 27.87 41.99 3.86
863 921 3.013327 ATGGCTGGCAGCTCAGGA 61.013 61.111 35.73 16.85 41.99 3.86
864 922 2.609534 ATGGCTGGCAGCTCAGGAA 61.610 57.895 35.73 16.61 41.99 3.36
865 923 2.438075 GGCTGGCAGCTCAGGAAG 60.438 66.667 35.73 0.00 41.99 3.46
882 940 2.583593 GCATCACGCGGAGGACTC 60.584 66.667 12.47 0.00 0.00 3.36
883 941 2.885113 CATCACGCGGAGGACTCA 59.115 61.111 12.47 0.00 0.00 3.41
884 942 1.439228 CATCACGCGGAGGACTCAT 59.561 57.895 12.47 0.00 0.00 2.90
885 943 0.596083 CATCACGCGGAGGACTCATC 60.596 60.000 12.47 0.00 0.00 2.92
886 944 1.037579 ATCACGCGGAGGACTCATCA 61.038 55.000 12.47 0.00 0.00 3.07
887 945 1.037579 TCACGCGGAGGACTCATCAT 61.038 55.000 12.47 0.00 0.00 2.45
888 946 0.179100 CACGCGGAGGACTCATCATT 60.179 55.000 12.47 0.00 0.00 2.57
889 947 0.537188 ACGCGGAGGACTCATCATTT 59.463 50.000 12.47 0.00 0.00 2.32
890 948 1.066143 ACGCGGAGGACTCATCATTTT 60.066 47.619 12.47 0.00 0.00 1.82
891 949 2.009774 CGCGGAGGACTCATCATTTTT 58.990 47.619 0.00 0.00 0.00 1.94
892 950 2.223112 CGCGGAGGACTCATCATTTTTG 60.223 50.000 0.00 0.00 0.00 2.44
893 951 2.749621 GCGGAGGACTCATCATTTTTGT 59.250 45.455 1.32 0.00 0.00 2.83
894 952 3.191371 GCGGAGGACTCATCATTTTTGTT 59.809 43.478 1.32 0.00 0.00 2.83
895 953 4.321230 GCGGAGGACTCATCATTTTTGTTT 60.321 41.667 1.32 0.00 0.00 2.83
896 954 5.772521 CGGAGGACTCATCATTTTTGTTTT 58.227 37.500 1.32 0.00 0.00 2.43
897 955 6.215845 CGGAGGACTCATCATTTTTGTTTTT 58.784 36.000 1.32 0.00 0.00 1.94
917 975 5.397142 TTTTTAGGGAACGTAGAGGACTC 57.603 43.478 0.00 0.00 0.00 3.36
918 976 3.726557 TTAGGGAACGTAGAGGACTCA 57.273 47.619 1.75 0.00 0.00 3.41
919 977 2.830651 AGGGAACGTAGAGGACTCAT 57.169 50.000 1.75 0.00 0.00 2.90
920 978 2.657143 AGGGAACGTAGAGGACTCATC 58.343 52.381 1.75 0.00 0.00 2.92
921 979 2.025226 AGGGAACGTAGAGGACTCATCA 60.025 50.000 1.75 0.00 0.00 3.07
922 980 2.959707 GGGAACGTAGAGGACTCATCAT 59.040 50.000 1.75 0.00 0.00 2.45
923 981 3.243569 GGGAACGTAGAGGACTCATCATG 60.244 52.174 1.75 0.00 0.00 3.07
924 982 3.243569 GGAACGTAGAGGACTCATCATGG 60.244 52.174 1.75 0.00 0.00 3.66
925 983 3.019799 ACGTAGAGGACTCATCATGGT 57.980 47.619 1.75 0.00 0.00 3.55
926 984 3.366396 ACGTAGAGGACTCATCATGGTT 58.634 45.455 1.75 0.00 0.00 3.67
927 985 3.381908 ACGTAGAGGACTCATCATGGTTC 59.618 47.826 1.75 0.00 0.00 3.62
928 986 3.634448 CGTAGAGGACTCATCATGGTTCT 59.366 47.826 1.75 0.00 0.00 3.01
929 987 4.261405 CGTAGAGGACTCATCATGGTTCTC 60.261 50.000 6.49 6.49 38.11 2.87
930 988 3.992999 AGAGGACTCATCATGGTTCTCT 58.007 45.455 10.02 10.02 41.90 3.10
931 989 4.360889 AGAGGACTCATCATGGTTCTCTT 58.639 43.478 10.02 0.00 43.57 2.85
932 990 4.782156 AGAGGACTCATCATGGTTCTCTTT 59.218 41.667 10.02 0.00 43.57 2.52
933 991 5.250313 AGAGGACTCATCATGGTTCTCTTTT 59.750 40.000 10.02 0.00 43.57 2.27
934 992 5.885465 AGGACTCATCATGGTTCTCTTTTT 58.115 37.500 0.00 0.00 0.00 1.94
957 1015 7.915293 TTTTTCATGGTAATACGTGTCTCAT 57.085 32.000 0.00 0.00 0.00 2.90
958 1016 7.915293 TTTTCATGGTAATACGTGTCTCATT 57.085 32.000 0.00 0.00 0.00 2.57
959 1017 7.534085 TTTCATGGTAATACGTGTCTCATTC 57.466 36.000 0.00 0.00 0.00 2.67
960 1018 6.215495 TCATGGTAATACGTGTCTCATTCA 57.785 37.500 0.00 0.00 0.00 2.57
961 1019 6.816136 TCATGGTAATACGTGTCTCATTCAT 58.184 36.000 0.00 0.00 0.00 2.57
962 1020 7.947282 TCATGGTAATACGTGTCTCATTCATA 58.053 34.615 0.00 0.00 0.00 2.15
963 1021 8.585018 TCATGGTAATACGTGTCTCATTCATAT 58.415 33.333 0.00 0.00 0.00 1.78
964 1022 8.864024 CATGGTAATACGTGTCTCATTCATATC 58.136 37.037 0.00 0.00 0.00 1.63
965 1023 7.947282 TGGTAATACGTGTCTCATTCATATCA 58.053 34.615 0.00 0.00 0.00 2.15
966 1024 8.585018 TGGTAATACGTGTCTCATTCATATCAT 58.415 33.333 0.00 0.00 0.00 2.45
973 1031 9.035607 ACGTGTCTCATTCATATCATAAAGAAC 57.964 33.333 0.00 0.00 0.00 3.01
974 1032 9.034544 CGTGTCTCATTCATATCATAAAGAACA 57.965 33.333 0.00 0.00 0.00 3.18
988 1046 7.847487 TCATAAAGAACAAAGTACAAGTCACG 58.153 34.615 0.00 0.00 0.00 4.35
989 1047 7.493320 TCATAAAGAACAAAGTACAAGTCACGT 59.507 33.333 0.00 0.00 0.00 4.49
990 1048 8.757789 CATAAAGAACAAAGTACAAGTCACGTA 58.242 33.333 0.00 0.00 0.00 3.57
991 1049 7.599630 AAAGAACAAAGTACAAGTCACGTAA 57.400 32.000 0.00 0.00 0.00 3.18
992 1050 7.599630 AAGAACAAAGTACAAGTCACGTAAA 57.400 32.000 0.00 0.00 0.00 2.01
993 1051 7.230466 AGAACAAAGTACAAGTCACGTAAAG 57.770 36.000 0.00 0.00 0.00 1.85
994 1052 7.037438 AGAACAAAGTACAAGTCACGTAAAGA 58.963 34.615 0.00 0.00 0.00 2.52
995 1053 6.579491 ACAAAGTACAAGTCACGTAAAGAC 57.421 37.500 0.00 0.00 36.26 3.01
996 1054 5.521372 ACAAAGTACAAGTCACGTAAAGACC 59.479 40.000 0.00 0.00 36.68 3.85
997 1055 3.893720 AGTACAAGTCACGTAAAGACCG 58.106 45.455 0.00 0.00 36.68 4.79
998 1056 3.565482 AGTACAAGTCACGTAAAGACCGA 59.435 43.478 0.00 0.00 36.68 4.69
999 1057 2.735823 ACAAGTCACGTAAAGACCGAC 58.264 47.619 1.21 0.00 36.68 4.79
1000 1058 2.099592 ACAAGTCACGTAAAGACCGACA 59.900 45.455 1.21 0.00 36.68 4.35
1001 1059 3.243636 ACAAGTCACGTAAAGACCGACAT 60.244 43.478 1.21 0.00 36.68 3.06
1002 1060 2.942710 AGTCACGTAAAGACCGACATG 58.057 47.619 1.21 0.00 36.68 3.21
1003 1061 2.555325 AGTCACGTAAAGACCGACATGA 59.445 45.455 0.00 0.00 36.68 3.07
1004 1062 2.660236 GTCACGTAAAGACCGACATGAC 59.340 50.000 0.00 0.00 0.00 3.06
1005 1063 2.293955 TCACGTAAAGACCGACATGACA 59.706 45.455 0.00 0.00 0.00 3.58
1006 1064 3.054166 CACGTAAAGACCGACATGACAA 58.946 45.455 0.00 0.00 0.00 3.18
1007 1065 3.491639 CACGTAAAGACCGACATGACAAA 59.508 43.478 0.00 0.00 0.00 2.83
1008 1066 4.025563 CACGTAAAGACCGACATGACAAAA 60.026 41.667 0.00 0.00 0.00 2.44
1009 1067 4.025480 ACGTAAAGACCGACATGACAAAAC 60.025 41.667 0.00 0.00 0.00 2.43
1010 1068 4.210537 CGTAAAGACCGACATGACAAAACT 59.789 41.667 0.00 0.00 0.00 2.66
1011 1069 4.552166 AAAGACCGACATGACAAAACTG 57.448 40.909 0.00 0.00 0.00 3.16
1012 1070 3.469008 AGACCGACATGACAAAACTGA 57.531 42.857 0.00 0.00 0.00 3.41
1013 1071 3.804036 AGACCGACATGACAAAACTGAA 58.196 40.909 0.00 0.00 0.00 3.02
1014 1072 4.196193 AGACCGACATGACAAAACTGAAA 58.804 39.130 0.00 0.00 0.00 2.69
1015 1073 4.638421 AGACCGACATGACAAAACTGAAAA 59.362 37.500 0.00 0.00 0.00 2.29
1016 1074 4.920376 ACCGACATGACAAAACTGAAAAG 58.080 39.130 0.00 0.00 0.00 2.27
1017 1075 4.638421 ACCGACATGACAAAACTGAAAAGA 59.362 37.500 0.00 0.00 0.00 2.52
1018 1076 5.299279 ACCGACATGACAAAACTGAAAAGAT 59.701 36.000 0.00 0.00 0.00 2.40
1019 1077 6.485313 ACCGACATGACAAAACTGAAAAGATA 59.515 34.615 0.00 0.00 0.00 1.98
1020 1078 7.012894 ACCGACATGACAAAACTGAAAAGATAA 59.987 33.333 0.00 0.00 0.00 1.75
1021 1079 7.323656 CCGACATGACAAAACTGAAAAGATAAC 59.676 37.037 0.00 0.00 0.00 1.89
1022 1080 7.855409 CGACATGACAAAACTGAAAAGATAACA 59.145 33.333 0.00 0.00 0.00 2.41
1023 1081 9.173939 GACATGACAAAACTGAAAAGATAACAG 57.826 33.333 0.00 0.00 37.62 3.16
1024 1082 8.902806 ACATGACAAAACTGAAAAGATAACAGA 58.097 29.630 0.00 0.00 35.85 3.41
1025 1083 9.734620 CATGACAAAACTGAAAAGATAACAGAA 57.265 29.630 0.00 0.00 35.85 3.02
1026 1084 9.736023 ATGACAAAACTGAAAAGATAACAGAAC 57.264 29.630 0.00 0.00 35.85 3.01
1027 1085 8.735315 TGACAAAACTGAAAAGATAACAGAACA 58.265 29.630 0.00 0.00 35.85 3.18
1028 1086 9.736023 GACAAAACTGAAAAGATAACAGAACAT 57.264 29.630 0.00 0.00 35.85 2.71
1029 1087 9.736023 ACAAAACTGAAAAGATAACAGAACATC 57.264 29.630 0.00 0.00 35.85 3.06
1030 1088 9.956720 CAAAACTGAAAAGATAACAGAACATCT 57.043 29.630 0.00 0.00 35.85 2.90
1032 1090 9.566432 AAACTGAAAAGATAACAGAACATCTCT 57.434 29.630 0.00 0.00 35.85 3.10
1043 1101 3.924144 AGAACATCTCTGAGCTTGACAC 58.076 45.455 12.47 5.44 31.12 3.67
1044 1102 2.758736 ACATCTCTGAGCTTGACACC 57.241 50.000 12.47 0.00 0.00 4.16
1045 1103 1.973515 ACATCTCTGAGCTTGACACCA 59.026 47.619 12.47 0.00 0.00 4.17
1046 1104 2.369860 ACATCTCTGAGCTTGACACCAA 59.630 45.455 12.47 0.00 0.00 3.67
1047 1105 2.533266 TCTCTGAGCTTGACACCAAC 57.467 50.000 0.00 0.00 0.00 3.77
1048 1106 1.143305 CTCTGAGCTTGACACCAACG 58.857 55.000 0.00 0.00 0.00 4.10
1049 1107 0.880278 TCTGAGCTTGACACCAACGC 60.880 55.000 0.00 0.00 0.00 4.84
1050 1108 1.845809 CTGAGCTTGACACCAACGCC 61.846 60.000 0.00 0.00 31.38 5.68
1051 1109 2.594592 AGCTTGACACCAACGCCC 60.595 61.111 0.00 0.00 31.38 6.13
1052 1110 4.025401 GCTTGACACCAACGCCCG 62.025 66.667 0.00 0.00 0.00 6.13
1053 1111 2.590575 CTTGACACCAACGCCCGT 60.591 61.111 0.00 0.00 0.00 5.28
1054 1112 2.589442 TTGACACCAACGCCCGTC 60.589 61.111 0.00 0.00 0.00 4.79
1055 1113 3.387225 TTGACACCAACGCCCGTCA 62.387 57.895 0.00 0.00 36.63 4.35
1056 1114 3.343421 GACACCAACGCCCGTCAC 61.343 66.667 0.00 0.00 0.00 3.67
1057 1115 4.922026 ACACCAACGCCCGTCACC 62.922 66.667 0.00 0.00 0.00 4.02
1058 1116 4.619227 CACCAACGCCCGTCACCT 62.619 66.667 0.00 0.00 0.00 4.00
1249 1308 2.338620 CGTGGCTTGACGGACAGA 59.661 61.111 0.00 0.00 35.65 3.41
1255 1315 1.295792 GCTTGACGGACAGACAAACA 58.704 50.000 0.00 0.00 34.42 2.83
1593 1672 2.224769 ACCCGTGAGATGGATTTTGTGT 60.225 45.455 0.00 0.00 0.00 3.72
1653 1732 1.337823 CCCGAACTACTCTGGTGTTGG 60.338 57.143 0.00 0.00 0.00 3.77
1661 1743 0.250467 CTCTGGTGTTGGTGAGGTGG 60.250 60.000 0.00 0.00 0.00 4.61
1762 1844 1.140652 TGTGGACTTGATGTGAGTGCA 59.859 47.619 0.00 0.00 42.14 4.57
1772 1854 5.450592 TGATGTGAGTGCAAGCAAAAATA 57.549 34.783 0.00 0.00 0.00 1.40
1885 2027 5.707242 AGATACTGTCATGTACCATACCG 57.293 43.478 0.00 0.00 0.00 4.02
1886 2028 2.596904 ACTGTCATGTACCATACCGC 57.403 50.000 0.00 0.00 0.00 5.68
2036 2178 6.688578 TCCATAGTGACTGAGTGAAGTAAAC 58.311 40.000 0.00 0.00 0.00 2.01
2326 2478 0.457035 AAGCAGCTGTGGTGTTGTTG 59.543 50.000 16.64 0.00 33.61 3.33
2430 2582 3.498774 AATAGGATGGCATGTCTGGAC 57.501 47.619 3.81 0.00 0.00 4.02
2461 2613 4.698780 CACTTGTCCACAATCTCACATCAT 59.301 41.667 0.00 0.00 35.02 2.45
2529 2681 5.163184 TGTGAACAACCTACTTGATACCCAA 60.163 40.000 0.00 0.00 33.59 4.12
2556 2717 9.657419 GACAATATTCCCAATGAAAATGAAGTT 57.343 29.630 0.00 0.00 36.33 2.66
2621 2782 6.381801 ACAATATTTCAGCTTTGAAGGAACG 58.618 36.000 0.69 0.00 0.00 3.95
3954 11406 1.212935 AGCTCAACACAACTTCACCCT 59.787 47.619 0.00 0.00 0.00 4.34
4353 11865 3.634448 GAGCAGGAGCAGATACAGTTCTA 59.366 47.826 0.00 0.00 45.49 2.10
4361 11873 6.041069 GGAGCAGATACAGTTCTAGGTGTATT 59.959 42.308 12.02 1.14 39.47 1.89
4790 12305 3.374220 TTGCCTTGTTGATTGCAGAAG 57.626 42.857 0.00 0.00 34.81 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.482429 GCAAACTCATCTCAGTTTATTTTGTTG 58.518 33.333 0.00 0.00 43.41 3.33
3 4 7.653311 GGCAAACTCATCTCAGTTTATTTTGTT 59.347 33.333 0.00 0.00 43.41 2.83
5 6 7.147312 TGGCAAACTCATCTCAGTTTATTTTG 58.853 34.615 0.00 0.00 43.41 2.44
6 7 7.288810 TGGCAAACTCATCTCAGTTTATTTT 57.711 32.000 0.00 0.00 43.41 1.82
7 8 6.899393 TGGCAAACTCATCTCAGTTTATTT 57.101 33.333 0.00 0.00 43.41 1.40
11 12 3.057033 GCATGGCAAACTCATCTCAGTTT 60.057 43.478 0.00 0.00 45.66 2.66
20 21 2.334946 GGCGAGCATGGCAAACTCA 61.335 57.895 17.14 0.00 43.90 3.41
21 22 2.334946 TGGCGAGCATGGCAAACTC 61.335 57.895 9.44 9.44 43.90 3.01
22 23 2.282391 TGGCGAGCATGGCAAACT 60.282 55.556 1.88 0.00 43.90 2.66
48 49 3.842925 TTGCTTGTCGAGGGTGGCC 62.843 63.158 0.00 0.00 0.00 5.36
53 54 2.034558 ACAAATGTTTGCTTGTCGAGGG 59.965 45.455 5.44 0.00 41.79 4.30
58 59 6.586868 TTTCATCACAAATGTTTGCTTGTC 57.413 33.333 5.44 0.00 41.79 3.18
63 64 5.794720 ACGTTTTTCATCACAAATGTTTGC 58.205 33.333 5.44 0.00 41.79 3.68
65 66 8.023050 TCAAACGTTTTTCATCACAAATGTTT 57.977 26.923 11.66 8.48 46.10 2.83
67 68 7.769272 ATCAAACGTTTTTCATCACAAATGT 57.231 28.000 11.66 0.00 34.28 2.71
68 69 8.935941 CAAATCAAACGTTTTTCATCACAAATG 58.064 29.630 11.66 0.00 0.00 2.32
75 76 6.787043 GCATGACAAATCAAACGTTTTTCATC 59.213 34.615 11.66 6.42 38.69 2.92
107 108 1.095228 ATATGCAGCAAACGTCGGGG 61.095 55.000 0.00 0.00 0.00 5.73
108 109 0.732571 AATATGCAGCAAACGTCGGG 59.267 50.000 0.00 0.00 0.00 5.14
110 111 2.537529 CCAGAATATGCAGCAAACGTCG 60.538 50.000 0.00 0.00 0.00 5.12
121 122 8.734386 CAAAAGGATAATAGGACCAGAATATGC 58.266 37.037 0.00 0.00 0.00 3.14
129 130 5.631481 GCACCTCAAAAGGATAATAGGACCA 60.631 44.000 0.00 0.00 46.67 4.02
153 154 2.558359 GGAAATGGAGGAACAACAGGTG 59.442 50.000 0.00 0.00 0.00 4.00
155 156 2.171003 GGGAAATGGAGGAACAACAGG 58.829 52.381 0.00 0.00 0.00 4.00
185 186 3.164011 CTGTCGTCGACCGTTCGC 61.164 66.667 22.05 0.00 45.46 4.70
187 188 0.109873 ATGACTGTCGTCGACCGTTC 60.110 55.000 21.11 15.01 43.21 3.95
203 204 5.858381 ACTTGCAAGACAGACTAAAGATGA 58.142 37.500 32.50 0.00 0.00 2.92
301 302 3.219176 TCCTACCCTGGACTACATACG 57.781 52.381 0.00 0.00 0.00 3.06
411 418 6.291648 TGTTCTCATCTATCTTCTGCAAGT 57.708 37.500 0.00 0.00 33.76 3.16
416 423 5.104776 TGGGGTTGTTCTCATCTATCTTCTG 60.105 44.000 0.00 0.00 0.00 3.02
446 465 0.179132 TATATGTTGCGTCCGTGCGT 60.179 50.000 0.00 0.00 37.81 5.24
466 485 3.369261 GGATACCATGCTAGCTGATGGAG 60.369 52.174 30.86 13.08 41.63 3.86
467 486 2.568956 GGATACCATGCTAGCTGATGGA 59.431 50.000 30.86 18.90 41.63 3.41
468 487 2.303890 TGGATACCATGCTAGCTGATGG 59.696 50.000 25.28 25.28 44.23 3.51
469 488 3.690475 TGGATACCATGCTAGCTGATG 57.310 47.619 17.23 11.94 0.00 3.07
485 513 1.348008 ATCAGCACGGGACCATGGAT 61.348 55.000 21.47 1.98 0.00 3.41
727 785 2.885135 TCCATCCAGTGCAGAACAAT 57.115 45.000 0.00 0.00 0.00 2.71
763 821 3.053170 AGGCCGGGTTCCAAAGTATTAAT 60.053 43.478 2.18 0.00 0.00 1.40
767 825 0.255033 GAGGCCGGGTTCCAAAGTAT 59.745 55.000 2.18 0.00 0.00 2.12
768 826 0.838987 AGAGGCCGGGTTCCAAAGTA 60.839 55.000 2.18 0.00 0.00 2.24
769 827 1.716028 AAGAGGCCGGGTTCCAAAGT 61.716 55.000 2.18 0.00 0.00 2.66
770 828 1.074951 AAGAGGCCGGGTTCCAAAG 59.925 57.895 2.18 0.00 0.00 2.77
772 830 2.434331 CAAGAGGCCGGGTTCCAA 59.566 61.111 2.18 0.00 0.00 3.53
773 831 3.646715 CCAAGAGGCCGGGTTCCA 61.647 66.667 2.18 0.00 0.00 3.53
774 832 3.623703 GACCAAGAGGCCGGGTTCC 62.624 68.421 2.18 0.00 39.06 3.62
775 833 2.046217 GACCAAGAGGCCGGGTTC 60.046 66.667 2.18 0.00 39.06 3.62
776 834 4.016706 CGACCAAGAGGCCGGGTT 62.017 66.667 2.18 0.00 37.10 4.11
777 835 3.892104 TACGACCAAGAGGCCGGGT 62.892 63.158 2.18 10.60 45.95 5.28
778 836 2.432300 ATACGACCAAGAGGCCGGG 61.432 63.158 2.18 0.00 45.95 5.73
779 837 1.227263 CATACGACCAAGAGGCCGG 60.227 63.158 0.00 0.00 45.95 6.13
781 839 0.539986 TTCCATACGACCAAGAGGCC 59.460 55.000 0.00 0.00 39.06 5.19
782 840 2.093658 TCTTTCCATACGACCAAGAGGC 60.094 50.000 0.00 0.00 39.06 4.70
783 841 3.887621 TCTTTCCATACGACCAAGAGG 57.112 47.619 0.00 0.00 42.21 3.69
784 842 5.120830 CACTTTCTTTCCATACGACCAAGAG 59.879 44.000 0.00 0.00 0.00 2.85
785 843 4.994852 CACTTTCTTTCCATACGACCAAGA 59.005 41.667 0.00 0.00 0.00 3.02
786 844 4.755123 ACACTTTCTTTCCATACGACCAAG 59.245 41.667 0.00 0.00 0.00 3.61
787 845 4.710324 ACACTTTCTTTCCATACGACCAA 58.290 39.130 0.00 0.00 0.00 3.67
788 846 4.202274 TGACACTTTCTTTCCATACGACCA 60.202 41.667 0.00 0.00 0.00 4.02
789 847 4.151867 GTGACACTTTCTTTCCATACGACC 59.848 45.833 0.00 0.00 0.00 4.79
790 848 4.748102 TGTGACACTTTCTTTCCATACGAC 59.252 41.667 7.20 0.00 0.00 4.34
791 849 4.748102 GTGTGACACTTTCTTTCCATACGA 59.252 41.667 8.76 0.00 0.00 3.43
792 850 4.084013 GGTGTGACACTTTCTTTCCATACG 60.084 45.833 16.07 0.00 34.40 3.06
793 851 5.063880 AGGTGTGACACTTTCTTTCCATAC 58.936 41.667 16.07 0.00 34.40 2.39
794 852 5.304686 AGGTGTGACACTTTCTTTCCATA 57.695 39.130 16.07 0.00 34.40 2.74
795 853 4.170468 AGGTGTGACACTTTCTTTCCAT 57.830 40.909 16.07 0.00 34.40 3.41
796 854 3.644966 AGGTGTGACACTTTCTTTCCA 57.355 42.857 16.07 0.00 34.40 3.53
797 855 4.275196 GGTTAGGTGTGACACTTTCTTTCC 59.725 45.833 16.07 6.74 34.40 3.13
798 856 4.879545 TGGTTAGGTGTGACACTTTCTTTC 59.120 41.667 16.07 0.00 34.40 2.62
799 857 4.850680 TGGTTAGGTGTGACACTTTCTTT 58.149 39.130 16.07 0.00 34.40 2.52
800 858 4.451900 CTGGTTAGGTGTGACACTTTCTT 58.548 43.478 16.07 0.00 34.40 2.52
801 859 3.744530 GCTGGTTAGGTGTGACACTTTCT 60.745 47.826 16.07 6.93 34.40 2.52
802 860 2.548480 GCTGGTTAGGTGTGACACTTTC 59.452 50.000 16.07 5.09 34.40 2.62
803 861 2.572290 GCTGGTTAGGTGTGACACTTT 58.428 47.619 16.07 7.06 34.40 2.66
804 862 1.202770 GGCTGGTTAGGTGTGACACTT 60.203 52.381 16.07 10.90 34.40 3.16
805 863 0.396811 GGCTGGTTAGGTGTGACACT 59.603 55.000 16.07 4.41 34.40 3.55
806 864 0.396811 AGGCTGGTTAGGTGTGACAC 59.603 55.000 7.29 7.29 0.00 3.67
807 865 0.396435 CAGGCTGGTTAGGTGTGACA 59.604 55.000 6.61 0.00 0.00 3.58
808 866 0.685097 TCAGGCTGGTTAGGTGTGAC 59.315 55.000 15.73 0.00 0.00 3.67
809 867 1.071699 GTTCAGGCTGGTTAGGTGTGA 59.928 52.381 15.73 0.00 0.00 3.58
810 868 1.523758 GTTCAGGCTGGTTAGGTGTG 58.476 55.000 15.73 0.00 0.00 3.82
811 869 0.400594 GGTTCAGGCTGGTTAGGTGT 59.599 55.000 15.73 0.00 0.00 4.16
812 870 0.322546 GGGTTCAGGCTGGTTAGGTG 60.323 60.000 15.73 0.00 0.00 4.00
813 871 1.838073 CGGGTTCAGGCTGGTTAGGT 61.838 60.000 15.73 0.00 0.00 3.08
814 872 1.078426 CGGGTTCAGGCTGGTTAGG 60.078 63.158 15.73 0.00 0.00 2.69
815 873 1.745489 GCGGGTTCAGGCTGGTTAG 60.745 63.158 15.73 4.23 0.00 2.34
816 874 2.349755 GCGGGTTCAGGCTGGTTA 59.650 61.111 15.73 0.00 0.00 2.85
835 893 3.536917 CAGCCATGCCCTGCCATG 61.537 66.667 0.00 0.00 41.71 3.66
836 894 4.853142 CCAGCCATGCCCTGCCAT 62.853 66.667 6.18 0.00 0.00 4.40
844 902 3.518998 CTGAGCTGCCAGCCATGC 61.519 66.667 14.25 1.15 43.77 4.06
845 903 2.829003 CCTGAGCTGCCAGCCATG 60.829 66.667 14.25 4.68 43.77 3.66
846 904 2.553765 CTTCCTGAGCTGCCAGCCAT 62.554 60.000 14.25 0.00 43.77 4.40
847 905 3.251509 TTCCTGAGCTGCCAGCCA 61.252 61.111 14.25 10.24 43.77 4.75
848 906 2.438075 CTTCCTGAGCTGCCAGCC 60.438 66.667 14.25 5.62 43.77 4.85
857 915 2.169789 CCGCGTGATGCTTCCTGAG 61.170 63.158 4.92 0.00 43.27 3.35
858 916 2.125552 CCGCGTGATGCTTCCTGA 60.126 61.111 4.92 0.00 43.27 3.86
859 917 2.125552 TCCGCGTGATGCTTCCTG 60.126 61.111 4.92 0.00 43.27 3.86
860 918 2.185350 CTCCGCGTGATGCTTCCT 59.815 61.111 4.92 0.00 43.27 3.36
861 919 2.892425 CCTCCGCGTGATGCTTCC 60.892 66.667 4.92 0.00 43.27 3.46
862 920 2.167861 GTCCTCCGCGTGATGCTTC 61.168 63.158 4.92 0.00 43.27 3.86
863 921 2.125512 GTCCTCCGCGTGATGCTT 60.126 61.111 4.92 0.00 43.27 3.91
864 922 3.069980 GAGTCCTCCGCGTGATGCT 62.070 63.158 4.92 0.00 43.27 3.79
865 923 2.583593 GAGTCCTCCGCGTGATGC 60.584 66.667 4.92 0.00 41.47 3.91
866 924 0.596083 GATGAGTCCTCCGCGTGATG 60.596 60.000 4.92 0.00 0.00 3.07
867 925 1.037579 TGATGAGTCCTCCGCGTGAT 61.038 55.000 4.92 0.00 0.00 3.06
868 926 1.037579 ATGATGAGTCCTCCGCGTGA 61.038 55.000 4.92 0.59 0.00 4.35
869 927 0.179100 AATGATGAGTCCTCCGCGTG 60.179 55.000 4.92 0.00 0.00 5.34
870 928 0.537188 AAATGATGAGTCCTCCGCGT 59.463 50.000 4.92 0.00 0.00 6.01
871 929 1.656652 AAAATGATGAGTCCTCCGCG 58.343 50.000 0.00 0.00 0.00 6.46
872 930 2.749621 ACAAAAATGATGAGTCCTCCGC 59.250 45.455 0.00 0.00 0.00 5.54
873 931 5.376854 AAACAAAAATGATGAGTCCTCCG 57.623 39.130 0.00 0.00 0.00 4.63
895 953 4.834496 TGAGTCCTCTACGTTCCCTAAAAA 59.166 41.667 0.00 0.00 0.00 1.94
896 954 4.410099 TGAGTCCTCTACGTTCCCTAAAA 58.590 43.478 0.00 0.00 0.00 1.52
897 955 4.038271 TGAGTCCTCTACGTTCCCTAAA 57.962 45.455 0.00 0.00 0.00 1.85
898 956 3.726557 TGAGTCCTCTACGTTCCCTAA 57.273 47.619 0.00 0.00 0.00 2.69
899 957 3.201487 TGATGAGTCCTCTACGTTCCCTA 59.799 47.826 0.00 0.00 0.00 3.53
900 958 2.025226 TGATGAGTCCTCTACGTTCCCT 60.025 50.000 0.00 0.00 0.00 4.20
901 959 2.376109 TGATGAGTCCTCTACGTTCCC 58.624 52.381 0.00 0.00 0.00 3.97
902 960 3.243569 CCATGATGAGTCCTCTACGTTCC 60.244 52.174 0.00 0.00 0.00 3.62
903 961 3.381908 ACCATGATGAGTCCTCTACGTTC 59.618 47.826 0.00 0.00 0.00 3.95
904 962 3.366396 ACCATGATGAGTCCTCTACGTT 58.634 45.455 0.00 0.00 0.00 3.99
905 963 3.019799 ACCATGATGAGTCCTCTACGT 57.980 47.619 0.00 0.00 0.00 3.57
906 964 3.634448 AGAACCATGATGAGTCCTCTACG 59.366 47.826 0.00 0.00 0.00 3.51
907 965 4.892934 AGAGAACCATGATGAGTCCTCTAC 59.107 45.833 2.06 0.00 0.00 2.59
908 966 5.136068 AGAGAACCATGATGAGTCCTCTA 57.864 43.478 2.06 0.00 0.00 2.43
909 967 3.992999 AGAGAACCATGATGAGTCCTCT 58.007 45.455 0.00 0.00 0.00 3.69
910 968 4.751767 AAGAGAACCATGATGAGTCCTC 57.248 45.455 0.00 0.00 0.00 3.71
911 969 5.511386 AAAAGAGAACCATGATGAGTCCT 57.489 39.130 0.00 0.00 0.00 3.85
933 991 7.915293 ATGAGACACGTATTACCATGAAAAA 57.085 32.000 0.00 0.00 0.00 1.94
934 992 7.604545 TGAATGAGACACGTATTACCATGAAAA 59.395 33.333 0.00 0.00 0.00 2.29
935 993 7.100409 TGAATGAGACACGTATTACCATGAAA 58.900 34.615 0.00 0.00 0.00 2.69
936 994 6.635755 TGAATGAGACACGTATTACCATGAA 58.364 36.000 0.00 0.00 0.00 2.57
937 995 6.215495 TGAATGAGACACGTATTACCATGA 57.785 37.500 0.00 0.00 0.00 3.07
938 996 8.763049 ATATGAATGAGACACGTATTACCATG 57.237 34.615 0.00 0.00 0.00 3.66
939 997 8.585018 TGATATGAATGAGACACGTATTACCAT 58.415 33.333 0.00 0.00 0.00 3.55
940 998 7.947282 TGATATGAATGAGACACGTATTACCA 58.053 34.615 0.00 0.00 0.00 3.25
941 999 8.988064 ATGATATGAATGAGACACGTATTACC 57.012 34.615 0.00 0.00 0.00 2.85
947 1005 9.035607 GTTCTTTATGATATGAATGAGACACGT 57.964 33.333 0.00 0.00 0.00 4.49
948 1006 9.034544 TGTTCTTTATGATATGAATGAGACACG 57.965 33.333 0.00 0.00 0.00 4.49
962 1020 8.495949 CGTGACTTGTACTTTGTTCTTTATGAT 58.504 33.333 0.00 0.00 0.00 2.45
963 1021 7.493320 ACGTGACTTGTACTTTGTTCTTTATGA 59.507 33.333 0.00 0.00 0.00 2.15
964 1022 7.627340 ACGTGACTTGTACTTTGTTCTTTATG 58.373 34.615 0.00 0.00 0.00 1.90
965 1023 7.781548 ACGTGACTTGTACTTTGTTCTTTAT 57.218 32.000 0.00 0.00 0.00 1.40
966 1024 8.700722 TTACGTGACTTGTACTTTGTTCTTTA 57.299 30.769 0.00 0.00 0.00 1.85
967 1025 7.599630 TTACGTGACTTGTACTTTGTTCTTT 57.400 32.000 0.00 0.00 0.00 2.52
968 1026 7.546667 TCTTTACGTGACTTGTACTTTGTTCTT 59.453 33.333 0.00 0.00 0.00 2.52
969 1027 7.009907 GTCTTTACGTGACTTGTACTTTGTTCT 59.990 37.037 0.00 0.00 0.00 3.01
970 1028 7.115553 GTCTTTACGTGACTTGTACTTTGTTC 58.884 38.462 0.00 0.00 0.00 3.18
971 1029 6.036408 GGTCTTTACGTGACTTGTACTTTGTT 59.964 38.462 0.00 0.00 35.04 2.83
972 1030 5.521372 GGTCTTTACGTGACTTGTACTTTGT 59.479 40.000 0.00 0.00 35.04 2.83
973 1031 5.332055 CGGTCTTTACGTGACTTGTACTTTG 60.332 44.000 0.00 0.00 35.04 2.77
974 1032 4.741676 CGGTCTTTACGTGACTTGTACTTT 59.258 41.667 0.00 0.00 35.04 2.66
975 1033 4.036734 TCGGTCTTTACGTGACTTGTACTT 59.963 41.667 0.00 0.00 35.04 2.24
976 1034 3.565482 TCGGTCTTTACGTGACTTGTACT 59.435 43.478 0.00 0.00 35.04 2.73
977 1035 3.665871 GTCGGTCTTTACGTGACTTGTAC 59.334 47.826 0.00 0.00 35.04 2.90
978 1036 3.314913 TGTCGGTCTTTACGTGACTTGTA 59.685 43.478 0.00 0.00 34.50 2.41
979 1037 2.099592 TGTCGGTCTTTACGTGACTTGT 59.900 45.455 0.00 0.00 34.50 3.16
980 1038 2.734670 TGTCGGTCTTTACGTGACTTG 58.265 47.619 0.00 0.00 34.50 3.16
981 1039 3.005050 TCATGTCGGTCTTTACGTGACTT 59.995 43.478 0.00 0.00 36.86 3.01
982 1040 2.555325 TCATGTCGGTCTTTACGTGACT 59.445 45.455 0.00 0.00 36.86 3.41
983 1041 2.937591 TCATGTCGGTCTTTACGTGAC 58.062 47.619 0.00 0.00 36.86 3.67
984 1042 2.293955 TGTCATGTCGGTCTTTACGTGA 59.706 45.455 0.00 0.00 38.87 4.35
985 1043 2.668250 TGTCATGTCGGTCTTTACGTG 58.332 47.619 0.00 0.00 34.57 4.49
986 1044 3.374220 TTGTCATGTCGGTCTTTACGT 57.626 42.857 0.00 0.00 0.00 3.57
987 1045 4.210537 AGTTTTGTCATGTCGGTCTTTACG 59.789 41.667 0.00 0.00 0.00 3.18
988 1046 5.235616 TCAGTTTTGTCATGTCGGTCTTTAC 59.764 40.000 0.00 0.00 0.00 2.01
989 1047 5.361427 TCAGTTTTGTCATGTCGGTCTTTA 58.639 37.500 0.00 0.00 0.00 1.85
990 1048 4.196193 TCAGTTTTGTCATGTCGGTCTTT 58.804 39.130 0.00 0.00 0.00 2.52
991 1049 3.804036 TCAGTTTTGTCATGTCGGTCTT 58.196 40.909 0.00 0.00 0.00 3.01
992 1050 3.469008 TCAGTTTTGTCATGTCGGTCT 57.531 42.857 0.00 0.00 0.00 3.85
993 1051 4.545823 TTTCAGTTTTGTCATGTCGGTC 57.454 40.909 0.00 0.00 0.00 4.79
994 1052 4.638421 TCTTTTCAGTTTTGTCATGTCGGT 59.362 37.500 0.00 0.00 0.00 4.69
995 1053 5.168526 TCTTTTCAGTTTTGTCATGTCGG 57.831 39.130 0.00 0.00 0.00 4.79
996 1054 7.855409 TGTTATCTTTTCAGTTTTGTCATGTCG 59.145 33.333 0.00 0.00 0.00 4.35
997 1055 9.173939 CTGTTATCTTTTCAGTTTTGTCATGTC 57.826 33.333 0.00 0.00 0.00 3.06
998 1056 8.902806 TCTGTTATCTTTTCAGTTTTGTCATGT 58.097 29.630 0.00 0.00 0.00 3.21
999 1057 9.734620 TTCTGTTATCTTTTCAGTTTTGTCATG 57.265 29.630 0.00 0.00 0.00 3.07
1000 1058 9.736023 GTTCTGTTATCTTTTCAGTTTTGTCAT 57.264 29.630 0.00 0.00 0.00 3.06
1001 1059 8.735315 TGTTCTGTTATCTTTTCAGTTTTGTCA 58.265 29.630 0.00 0.00 0.00 3.58
1002 1060 9.736023 ATGTTCTGTTATCTTTTCAGTTTTGTC 57.264 29.630 0.00 0.00 0.00 3.18
1003 1061 9.736023 GATGTTCTGTTATCTTTTCAGTTTTGT 57.264 29.630 0.00 0.00 0.00 2.83
1004 1062 9.956720 AGATGTTCTGTTATCTTTTCAGTTTTG 57.043 29.630 0.00 0.00 29.64 2.44
1006 1064 9.566432 AGAGATGTTCTGTTATCTTTTCAGTTT 57.434 29.630 0.00 0.00 33.97 2.66
1007 1065 8.997323 CAGAGATGTTCTGTTATCTTTTCAGTT 58.003 33.333 0.00 0.00 46.77 3.16
1008 1066 8.545229 CAGAGATGTTCTGTTATCTTTTCAGT 57.455 34.615 0.00 0.00 46.77 3.41
1022 1080 3.306641 GGTGTCAAGCTCAGAGATGTTCT 60.307 47.826 0.00 0.00 36.25 3.01
1023 1081 2.999355 GGTGTCAAGCTCAGAGATGTTC 59.001 50.000 0.00 0.00 0.00 3.18
1024 1082 2.369860 TGGTGTCAAGCTCAGAGATGTT 59.630 45.455 0.00 0.00 0.00 2.71
1025 1083 1.973515 TGGTGTCAAGCTCAGAGATGT 59.026 47.619 0.00 0.00 0.00 3.06
1026 1084 2.740981 GTTGGTGTCAAGCTCAGAGATG 59.259 50.000 0.00 0.00 32.92 2.90
1027 1085 2.611473 CGTTGGTGTCAAGCTCAGAGAT 60.611 50.000 0.00 0.00 32.92 2.75
1028 1086 1.269778 CGTTGGTGTCAAGCTCAGAGA 60.270 52.381 0.00 0.00 32.92 3.10
1029 1087 1.143305 CGTTGGTGTCAAGCTCAGAG 58.857 55.000 0.00 0.00 32.92 3.35
1030 1088 0.880278 GCGTTGGTGTCAAGCTCAGA 60.880 55.000 0.00 0.00 32.92 3.27
1031 1089 1.571460 GCGTTGGTGTCAAGCTCAG 59.429 57.895 0.00 0.00 32.92 3.35
1032 1090 1.891919 GGCGTTGGTGTCAAGCTCA 60.892 57.895 0.00 0.00 32.92 4.26
1033 1091 2.617274 GGGCGTTGGTGTCAAGCTC 61.617 63.158 0.00 0.00 32.92 4.09
1034 1092 2.594592 GGGCGTTGGTGTCAAGCT 60.595 61.111 0.00 0.00 32.92 3.74
1035 1093 4.025401 CGGGCGTTGGTGTCAAGC 62.025 66.667 0.00 0.00 32.92 4.01
1036 1094 2.590575 ACGGGCGTTGGTGTCAAG 60.591 61.111 0.00 0.00 32.92 3.02
1037 1095 2.589442 GACGGGCGTTGGTGTCAA 60.589 61.111 0.00 0.00 0.00 3.18
1038 1096 3.851128 TGACGGGCGTTGGTGTCA 61.851 61.111 0.00 0.00 38.91 3.58
1039 1097 3.343421 GTGACGGGCGTTGGTGTC 61.343 66.667 0.00 0.00 0.00 3.67
1040 1098 4.922026 GGTGACGGGCGTTGGTGT 62.922 66.667 0.00 0.00 0.00 4.16
1041 1099 4.619227 AGGTGACGGGCGTTGGTG 62.619 66.667 0.00 0.00 0.00 4.17
1042 1100 4.619227 CAGGTGACGGGCGTTGGT 62.619 66.667 0.00 0.00 0.00 3.67
1044 1102 4.308458 TCCAGGTGACGGGCGTTG 62.308 66.667 0.00 0.00 46.42 4.10
1045 1103 4.003788 CTCCAGGTGACGGGCGTT 62.004 66.667 0.00 0.00 46.42 4.84
1047 1105 4.436998 GACTCCAGGTGACGGGCG 62.437 72.222 0.00 0.00 46.42 6.13
1048 1106 2.185310 ATTGACTCCAGGTGACGGGC 62.185 60.000 0.00 0.00 46.42 6.13
1050 1108 1.442769 CAATTGACTCCAGGTGACGG 58.557 55.000 0.00 0.00 0.00 4.79
1051 1109 0.798776 GCAATTGACTCCAGGTGACG 59.201 55.000 10.34 0.00 0.00 4.35
1052 1110 1.896220 TGCAATTGACTCCAGGTGAC 58.104 50.000 10.34 0.00 0.00 3.67
1053 1111 2.106338 TCTTGCAATTGACTCCAGGTGA 59.894 45.455 10.34 0.00 0.00 4.02
1054 1112 2.507484 TCTTGCAATTGACTCCAGGTG 58.493 47.619 10.34 0.00 0.00 4.00
1055 1113 2.957402 TCTTGCAATTGACTCCAGGT 57.043 45.000 10.34 0.00 0.00 4.00
1056 1114 3.305608 GGTTTCTTGCAATTGACTCCAGG 60.306 47.826 10.34 0.00 0.00 4.45
1057 1115 3.318839 TGGTTTCTTGCAATTGACTCCAG 59.681 43.478 10.34 0.00 0.00 3.86
1058 1116 3.068024 GTGGTTTCTTGCAATTGACTCCA 59.932 43.478 10.34 3.54 0.00 3.86
1229 1288 2.737376 GTCCGTCAAGCCACGTCC 60.737 66.667 0.00 0.00 38.14 4.79
1249 1308 0.533308 TTCCTAACGGCGCTGTTTGT 60.533 50.000 37.10 18.29 33.32 2.83
1255 1315 0.589708 GTTTTGTTCCTAACGGCGCT 59.410 50.000 6.90 0.00 0.00 5.92
1593 1672 6.072728 CGGGATCTACATCAACAAAAGAAACA 60.073 38.462 0.00 0.00 0.00 2.83
1653 1732 0.108585 ACACATCACCACCACCTCAC 59.891 55.000 0.00 0.00 0.00 3.51
1661 1743 0.806868 CCATGCTCACACATCACCAC 59.193 55.000 0.00 0.00 0.00 4.16
1885 2027 6.486253 TCATTTATTTCACTCACTCACTGC 57.514 37.500 0.00 0.00 0.00 4.40
1886 2028 9.338291 CAATTCATTTATTTCACTCACTCACTG 57.662 33.333 0.00 0.00 0.00 3.66
2005 2147 5.594725 TCACTCAGTCACTATGGATACCTTC 59.405 44.000 0.00 0.00 0.00 3.46
2240 2392 6.030548 TCACTTCACTTCTATTCAGTCCAG 57.969 41.667 0.00 0.00 0.00 3.86
2326 2478 2.035632 CCACTCCTCATCTACCCACTC 58.964 57.143 0.00 0.00 0.00 3.51
2430 2582 1.536940 TGTGGACAAGTGATGCATGG 58.463 50.000 2.46 0.00 0.00 3.66
2461 2613 5.326069 AGTCTCCTGTAGCTTGTTCTTCTA 58.674 41.667 0.00 0.00 0.00 2.10
2529 2681 9.039165 ACTTCATTTTCATTGGGAATATTGTCT 57.961 29.630 0.00 0.00 34.91 3.41
2556 2717 3.390967 TCTCCTCATGTTCACCTTGTTGA 59.609 43.478 0.00 0.00 0.00 3.18
2621 2782 3.213264 CATCCATTGCACCCAGCC 58.787 61.111 0.00 0.00 44.83 4.85
3539 7438 4.910304 ACCTAATTGATCATCTAGGGTGCT 59.090 41.667 24.32 9.27 36.08 4.40
4007 11462 2.972713 AGAGTTGCAGGTAGTGGAAGAA 59.027 45.455 0.00 0.00 37.13 2.52
4353 11865 6.674419 AGGAAAACAGGAGAGATAATACACCT 59.326 38.462 0.00 0.00 0.00 4.00
4361 11873 8.602424 TGTAATTTCAGGAAAACAGGAGAGATA 58.398 33.333 0.00 0.00 33.56 1.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.