Multiple sequence alignment - TraesCS5B01G066100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G066100 chr5B 100.000 2576 0 0 1 2576 74308165 74305590 0.000000e+00 4758.0
1 TraesCS5B01G066100 chr5B 96.667 60 2 0 2113 2172 74305996 74305937 1.630000e-17 100.0
2 TraesCS5B01G066100 chr5B 96.667 60 2 0 2170 2229 74306053 74305994 1.630000e-17 100.0
3 TraesCS5B01G066100 chr5B 90.164 61 5 1 2510 2570 479219421 479219362 7.640000e-11 78.7
4 TraesCS5B01G066100 chr5B 87.879 66 7 1 2505 2570 293900984 293901048 2.750000e-10 76.8
5 TraesCS5B01G066100 chr5D 89.821 2240 112 49 1 2172 68238896 68236705 0.000000e+00 2767.0
6 TraesCS5B01G066100 chr5D 93.023 129 8 1 2306 2434 383710833 383710706 1.220000e-43 187.0
7 TraesCS5B01G066100 chr5D 90.099 101 9 1 2170 2269 68236765 68236665 2.080000e-26 130.0
8 TraesCS5B01G066100 chr5A 89.920 2113 90 50 1 2034 59138558 59140626 0.000000e+00 2608.0
9 TraesCS5B01G066100 chr2D 93.798 129 7 1 2306 2434 649072635 649072762 2.620000e-45 193.0
10 TraesCS5B01G066100 chr2D 93.023 129 8 1 2306 2434 389895185 389895312 1.220000e-43 187.0
11 TraesCS5B01G066100 chr2D 92.366 131 8 2 2305 2434 344665911 344665782 4.380000e-43 185.0
12 TraesCS5B01G066100 chr2D 93.443 61 4 0 2024 2084 340268222 340268282 9.820000e-15 91.6
13 TraesCS5B01G066100 chr1A 94.444 126 6 1 2309 2434 442451426 442451302 2.620000e-45 193.0
14 TraesCS5B01G066100 chr4B 92.481 133 8 2 2303 2434 480198034 480197903 3.380000e-44 189.0
15 TraesCS5B01G066100 chr4B 88.095 84 8 2 2494 2576 300265484 300265402 5.870000e-17 99.0
16 TraesCS5B01G066100 chr3B 92.366 131 8 2 2305 2434 378378949 378379078 4.380000e-43 185.0
17 TraesCS5B01G066100 chr3B 91.729 133 9 2 2303 2434 540330703 540330834 1.570000e-42 183.0
18 TraesCS5B01G066100 chr3A 91.729 133 7 4 2310 2441 518836045 518835916 5.660000e-42 182.0
19 TraesCS5B01G066100 chr3A 84.783 92 13 1 2484 2575 561758929 561758839 9.820000e-15 91.6
20 TraesCS5B01G066100 chr3D 91.860 86 6 1 2484 2569 272080397 272080481 4.500000e-23 119.0
21 TraesCS5B01G066100 chr4D 90.698 86 7 1 2484 2569 235685444 235685528 2.090000e-21 113.0
22 TraesCS5B01G066100 chr4D 90.123 81 7 1 2496 2576 235713022 235713101 1.260000e-18 104.0
23 TraesCS5B01G066100 chr7A 83.871 93 14 1 2484 2576 277181297 277181206 1.270000e-13 87.9
24 TraesCS5B01G066100 chr1B 94.340 53 2 1 2520 2572 520504922 520504871 2.120000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G066100 chr5B 74305590 74308165 2575 True 1652.666667 4758 97.778 1 2576 3 chr5B.!!$R2 2575
1 TraesCS5B01G066100 chr5D 68236665 68238896 2231 True 1448.500000 2767 89.960 1 2269 2 chr5D.!!$R2 2268
2 TraesCS5B01G066100 chr5A 59138558 59140626 2068 False 2608.000000 2608 89.920 1 2034 1 chr5A.!!$F1 2033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 925 0.519077 GTTACTCAACTGGCAGCAGC 59.481 55.0 15.89 0.0 41.1 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 2660 0.108945 GCAAAGAAGTGGCTGATGGC 60.109 55.0 0.0 0.0 40.9 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
335 351 1.137872 CAAGGACGAGGAGGAATGAGG 59.862 57.143 0.00 0.00 0.00 3.86
351 367 3.387947 GGTCCGGGTCGTCATGGT 61.388 66.667 0.00 0.00 0.00 3.55
381 397 1.302192 GGTTGTTGGCCTGACGCTA 60.302 57.895 3.32 0.00 37.74 4.26
385 401 2.740826 TTGGCCTGACGCTAACGC 60.741 61.111 3.32 0.00 45.53 4.84
386 402 3.234630 TTGGCCTGACGCTAACGCT 62.235 57.895 3.32 0.00 45.53 5.07
387 403 2.886124 GGCCTGACGCTAACGCTC 60.886 66.667 0.00 0.00 45.53 5.03
388 404 3.248171 GCCTGACGCTAACGCTCG 61.248 66.667 0.00 0.00 45.53 5.03
408 431 3.317993 TCGTGAAGACTGAAGTGTGATCA 59.682 43.478 0.00 0.00 0.00 2.92
421 444 1.226802 TGATCAAGCTCGCTCGCTC 60.227 57.895 0.00 0.00 39.86 5.03
448 471 3.817709 ATTTGTTTCCTGGTGTGGTTG 57.182 42.857 0.00 0.00 0.00 3.77
449 472 2.223803 TTGTTTCCTGGTGTGGTTGT 57.776 45.000 0.00 0.00 0.00 3.32
450 473 1.468985 TGTTTCCTGGTGTGGTTGTG 58.531 50.000 0.00 0.00 0.00 3.33
540 569 3.040147 TCGGATTTGCGTTTCTCTTCT 57.960 42.857 0.00 0.00 0.00 2.85
541 570 3.399330 TCGGATTTGCGTTTCTCTTCTT 58.601 40.909 0.00 0.00 0.00 2.52
542 571 3.432252 TCGGATTTGCGTTTCTCTTCTTC 59.568 43.478 0.00 0.00 0.00 2.87
671 700 2.186903 GCGACGGATGGGTCACAT 59.813 61.111 0.00 0.00 44.18 3.21
701 731 1.519455 GCTCCATTACTGCGCGTCT 60.519 57.895 8.43 0.00 0.00 4.18
743 773 5.381174 TGGGACTTTATACGTATCGATGG 57.619 43.478 12.24 2.22 0.00 3.51
763 807 3.326880 TGGATAGATGATCAGCAGTGCAT 59.673 43.478 19.20 2.16 36.12 3.96
764 808 3.685272 GGATAGATGATCAGCAGTGCATG 59.315 47.826 19.20 12.61 36.12 4.06
765 809 2.711978 AGATGATCAGCAGTGCATGT 57.288 45.000 19.20 1.40 0.00 3.21
766 810 3.832615 AGATGATCAGCAGTGCATGTA 57.167 42.857 19.20 0.00 0.00 2.29
767 811 3.464907 AGATGATCAGCAGTGCATGTAC 58.535 45.455 19.20 5.71 0.00 2.90
768 812 1.643880 TGATCAGCAGTGCATGTACG 58.356 50.000 19.20 5.01 0.00 3.67
769 813 0.933097 GATCAGCAGTGCATGTACGG 59.067 55.000 19.20 9.59 0.00 4.02
807 851 1.136611 GTGTGTGACATTTCGAGCGAC 60.137 52.381 0.00 0.00 0.00 5.19
813 857 0.737715 ACATTTCGAGCGACCTGAGC 60.738 55.000 7.58 0.00 0.00 4.26
814 858 1.153549 ATTTCGAGCGACCTGAGCC 60.154 57.895 0.00 0.00 34.64 4.70
815 859 2.579684 ATTTCGAGCGACCTGAGCCC 62.580 60.000 0.00 0.00 34.64 5.19
817 861 4.504916 CGAGCGACCTGAGCCCAG 62.505 72.222 0.00 0.00 40.09 4.45
864 925 0.519077 GTTACTCAACTGGCAGCAGC 59.481 55.000 15.89 0.00 41.10 5.25
908 969 1.340657 GCAGAGAGAACGTGACGCTG 61.341 60.000 4.25 4.17 35.29 5.18
948 1009 4.430137 GTGGTCACTCACGTTAGTATCA 57.570 45.455 1.31 0.00 0.00 2.15
961 1022 8.141909 TCACGTTAGTATCATCATTTAAGAGGG 58.858 37.037 0.00 0.00 0.00 4.30
972 1038 2.891307 TTAAGAGGGCCGAGGGGAGG 62.891 65.000 0.00 0.00 34.06 4.30
995 1061 1.202154 CGATACAGAGACGTCCACCAC 60.202 57.143 13.01 0.00 0.00 4.16
1025 1095 1.396185 TGGCCACCACCTCTCCTAT 59.604 57.895 0.00 0.00 0.00 2.57
1567 1640 1.470805 CCGTCGTTGCATCCATGTCTA 60.471 52.381 0.00 0.00 0.00 2.59
1613 1690 1.334869 CACCGAATTCATTAGCCTGCC 59.665 52.381 6.22 0.00 0.00 4.85
1619 1696 4.365723 GAATTCATTAGCCTGCCACAATG 58.634 43.478 0.00 3.57 0.00 2.82
1647 1724 2.961741 TGGTGTATTTGTGCCATTGTGT 59.038 40.909 0.00 0.00 0.00 3.72
1667 1744 1.898902 TTGTGGGTAACAATGGGTCG 58.101 50.000 0.00 0.00 43.96 4.79
1741 1845 6.958752 GCTTGTGTACATTTTTGTTTTGGTTC 59.041 34.615 0.00 0.00 0.00 3.62
1781 1885 4.794278 TGCTAACTTGTGATCTAACCGA 57.206 40.909 0.00 0.00 0.00 4.69
1782 1886 5.339008 TGCTAACTTGTGATCTAACCGAT 57.661 39.130 0.00 0.00 34.25 4.18
1804 1908 2.223641 CGGTTGCCATTGATGATCCAAG 60.224 50.000 0.00 0.00 0.00 3.61
1817 1921 2.165641 TGATCCAAGTAGGCACTGTACG 59.834 50.000 0.00 0.00 41.52 3.67
1875 1979 3.317455 TCAGATAGCGTAAGGGGGTTA 57.683 47.619 0.00 0.00 38.28 2.85
1882 1986 2.092592 AGCGTAAGGGGGTTAGGAATTG 60.093 50.000 0.00 0.00 38.28 2.32
1884 1988 2.240414 CGTAAGGGGGTTAGGAATTGGT 59.760 50.000 0.00 0.00 0.00 3.67
1885 1989 3.455543 CGTAAGGGGGTTAGGAATTGGTA 59.544 47.826 0.00 0.00 0.00 3.25
1886 1990 4.684214 CGTAAGGGGGTTAGGAATTGGTAC 60.684 50.000 0.00 0.00 0.00 3.34
1991 2107 4.376146 GAAGAGGATGAAGTCATGCCTAC 58.624 47.826 8.96 2.63 44.46 3.18
2104 2220 1.734163 AATCTTAAACTGGTCGCCCG 58.266 50.000 0.00 0.00 0.00 6.13
2137 2253 4.301662 TGGGCCCCTTCCTTCCCT 62.302 66.667 22.27 0.00 39.49 4.20
2138 2254 3.744155 GGGCCCCTTCCTTCCCTG 61.744 72.222 12.23 0.00 35.87 4.45
2139 2255 4.448976 GGCCCCTTCCTTCCCTGC 62.449 72.222 0.00 0.00 0.00 4.85
2140 2256 3.342477 GCCCCTTCCTTCCCTGCT 61.342 66.667 0.00 0.00 0.00 4.24
2141 2257 2.923910 GCCCCTTCCTTCCCTGCTT 61.924 63.158 0.00 0.00 0.00 3.91
2142 2258 1.304617 CCCCTTCCTTCCCTGCTTC 59.695 63.158 0.00 0.00 0.00 3.86
2143 2259 1.304617 CCCTTCCTTCCCTGCTTCC 59.695 63.158 0.00 0.00 0.00 3.46
2144 2260 1.500783 CCCTTCCTTCCCTGCTTCCA 61.501 60.000 0.00 0.00 0.00 3.53
2145 2261 0.405585 CCTTCCTTCCCTGCTTCCAA 59.594 55.000 0.00 0.00 0.00 3.53
2146 2262 1.006400 CCTTCCTTCCCTGCTTCCAAT 59.994 52.381 0.00 0.00 0.00 3.16
2147 2263 2.373224 CTTCCTTCCCTGCTTCCAATC 58.627 52.381 0.00 0.00 0.00 2.67
2148 2264 1.673767 TCCTTCCCTGCTTCCAATCT 58.326 50.000 0.00 0.00 0.00 2.40
2149 2265 1.561542 TCCTTCCCTGCTTCCAATCTC 59.438 52.381 0.00 0.00 0.00 2.75
2150 2266 1.283029 CCTTCCCTGCTTCCAATCTCA 59.717 52.381 0.00 0.00 0.00 3.27
2151 2267 2.291153 CCTTCCCTGCTTCCAATCTCAA 60.291 50.000 0.00 0.00 0.00 3.02
2152 2268 3.626729 CCTTCCCTGCTTCCAATCTCAAT 60.627 47.826 0.00 0.00 0.00 2.57
2153 2269 4.385643 CCTTCCCTGCTTCCAATCTCAATA 60.386 45.833 0.00 0.00 0.00 1.90
2154 2270 4.156455 TCCCTGCTTCCAATCTCAATAC 57.844 45.455 0.00 0.00 0.00 1.89
2155 2271 3.782523 TCCCTGCTTCCAATCTCAATACT 59.217 43.478 0.00 0.00 0.00 2.12
2156 2272 4.133078 CCCTGCTTCCAATCTCAATACTC 58.867 47.826 0.00 0.00 0.00 2.59
2157 2273 4.133078 CCTGCTTCCAATCTCAATACTCC 58.867 47.826 0.00 0.00 0.00 3.85
2158 2274 4.384537 CCTGCTTCCAATCTCAATACTCCA 60.385 45.833 0.00 0.00 0.00 3.86
2159 2275 5.374921 CTGCTTCCAATCTCAATACTCCAT 58.625 41.667 0.00 0.00 0.00 3.41
2160 2276 6.464892 CCTGCTTCCAATCTCAATACTCCATA 60.465 42.308 0.00 0.00 0.00 2.74
2161 2277 7.083062 TGCTTCCAATCTCAATACTCCATAT 57.917 36.000 0.00 0.00 0.00 1.78
2162 2278 7.164122 TGCTTCCAATCTCAATACTCCATATC 58.836 38.462 0.00 0.00 0.00 1.63
2163 2279 7.164122 GCTTCCAATCTCAATACTCCATATCA 58.836 38.462 0.00 0.00 0.00 2.15
2164 2280 7.333921 GCTTCCAATCTCAATACTCCATATCAG 59.666 40.741 0.00 0.00 0.00 2.90
2165 2281 6.705302 TCCAATCTCAATACTCCATATCAGC 58.295 40.000 0.00 0.00 0.00 4.26
2166 2282 6.270695 TCCAATCTCAATACTCCATATCAGCA 59.729 38.462 0.00 0.00 0.00 4.41
2167 2283 6.938596 CCAATCTCAATACTCCATATCAGCAA 59.061 38.462 0.00 0.00 0.00 3.91
2168 2284 7.119407 CCAATCTCAATACTCCATATCAGCAAG 59.881 40.741 0.00 0.00 0.00 4.01
2169 2285 5.545588 TCTCAATACTCCATATCAGCAAGC 58.454 41.667 0.00 0.00 0.00 4.01
2170 2286 5.070847 TCTCAATACTCCATATCAGCAAGCA 59.929 40.000 0.00 0.00 0.00 3.91
2171 2287 5.059161 TCAATACTCCATATCAGCAAGCAC 58.941 41.667 0.00 0.00 0.00 4.40
2172 2288 4.970860 ATACTCCATATCAGCAAGCACT 57.029 40.909 0.00 0.00 0.00 4.40
2173 2289 6.041979 TCAATACTCCATATCAGCAAGCACTA 59.958 38.462 0.00 0.00 0.00 2.74
2174 2290 4.333913 ACTCCATATCAGCAAGCACTAG 57.666 45.455 0.00 0.00 0.00 2.57
2175 2291 3.070734 ACTCCATATCAGCAAGCACTAGG 59.929 47.826 0.00 0.00 0.00 3.02
2176 2292 2.369860 TCCATATCAGCAAGCACTAGGG 59.630 50.000 0.00 0.00 0.00 3.53
2177 2293 2.105477 CCATATCAGCAAGCACTAGGGT 59.895 50.000 0.00 0.00 0.00 4.34
2178 2294 2.988010 TATCAGCAAGCACTAGGGTG 57.012 50.000 0.00 0.00 45.53 4.61
2179 2295 0.254178 ATCAGCAAGCACTAGGGTGG 59.746 55.000 0.00 0.00 43.18 4.61
2180 2296 1.377725 CAGCAAGCACTAGGGTGGG 60.378 63.158 0.00 0.00 43.18 4.61
2181 2297 2.751837 GCAAGCACTAGGGTGGGC 60.752 66.667 0.00 0.00 43.18 5.36
2182 2298 2.044946 CAAGCACTAGGGTGGGCC 60.045 66.667 0.00 0.00 43.18 5.80
2192 2308 4.062032 GGTGGGCCCCTTCCTTCC 62.062 72.222 22.27 6.49 0.00 3.46
2193 2309 4.062032 GTGGGCCCCTTCCTTCCC 62.062 72.222 22.27 0.00 39.22 3.97
2194 2310 4.301662 TGGGCCCCTTCCTTCCCT 62.302 66.667 22.27 0.00 39.49 4.20
2199 2315 1.304617 CCCCTTCCTTCCCTGCTTC 59.695 63.158 0.00 0.00 0.00 3.86
2205 2321 1.673767 TCCTTCCCTGCTTCCAATCT 58.326 50.000 0.00 0.00 0.00 2.40
2207 2323 1.283029 CCTTCCCTGCTTCCAATCTCA 59.717 52.381 0.00 0.00 0.00 3.27
2235 2351 7.272978 ACTCCATATCAGCAAGTACGTAAAAT 58.727 34.615 0.00 0.00 0.00 1.82
2236 2352 7.438459 ACTCCATATCAGCAAGTACGTAAAATC 59.562 37.037 0.00 0.00 0.00 2.17
2237 2353 6.704493 TCCATATCAGCAAGTACGTAAAATCC 59.296 38.462 0.00 0.00 0.00 3.01
2238 2354 6.706270 CCATATCAGCAAGTACGTAAAATCCT 59.294 38.462 0.00 0.00 0.00 3.24
2239 2355 7.226720 CCATATCAGCAAGTACGTAAAATCCTT 59.773 37.037 0.00 0.00 0.00 3.36
2240 2356 9.256477 CATATCAGCAAGTACGTAAAATCCTTA 57.744 33.333 0.00 0.00 0.00 2.69
2241 2357 9.826574 ATATCAGCAAGTACGTAAAATCCTTAA 57.173 29.630 0.00 0.00 0.00 1.85
2242 2358 8.732746 ATCAGCAAGTACGTAAAATCCTTAAT 57.267 30.769 0.00 0.00 0.00 1.40
2243 2359 8.556213 TCAGCAAGTACGTAAAATCCTTAATT 57.444 30.769 0.00 0.00 0.00 1.40
2244 2360 9.656040 TCAGCAAGTACGTAAAATCCTTAATTA 57.344 29.630 0.00 0.00 0.00 1.40
2299 2415 8.507524 AACTTTTAATAGGTCTACCATTGCTC 57.492 34.615 1.26 0.00 38.89 4.26
2300 2416 6.761714 ACTTTTAATAGGTCTACCATTGCTCG 59.238 38.462 1.26 0.00 38.89 5.03
2301 2417 5.864418 TTAATAGGTCTACCATTGCTCGT 57.136 39.130 1.26 0.00 38.89 4.18
2302 2418 4.323553 AATAGGTCTACCATTGCTCGTC 57.676 45.455 1.26 0.00 38.89 4.20
2303 2419 1.853963 AGGTCTACCATTGCTCGTCT 58.146 50.000 1.26 0.00 38.89 4.18
2304 2420 2.180276 AGGTCTACCATTGCTCGTCTT 58.820 47.619 1.26 0.00 38.89 3.01
2305 2421 2.166664 AGGTCTACCATTGCTCGTCTTC 59.833 50.000 1.26 0.00 38.89 2.87
2306 2422 2.166664 GGTCTACCATTGCTCGTCTTCT 59.833 50.000 0.00 0.00 35.64 2.85
2307 2423 3.380637 GGTCTACCATTGCTCGTCTTCTA 59.619 47.826 0.00 0.00 35.64 2.10
2308 2424 4.142227 GGTCTACCATTGCTCGTCTTCTAA 60.142 45.833 0.00 0.00 35.64 2.10
2309 2425 5.038033 GTCTACCATTGCTCGTCTTCTAAG 58.962 45.833 0.00 0.00 0.00 2.18
2310 2426 4.948004 TCTACCATTGCTCGTCTTCTAAGA 59.052 41.667 0.00 0.00 0.00 2.10
2311 2427 9.948176 GGTCTACCATTGCTCGTCTTCTAAGAC 62.948 48.148 11.98 11.98 42.75 3.01
2324 2440 6.605471 TCTTCTAAGACTAGCCACAATGAA 57.395 37.500 0.00 0.00 0.00 2.57
2325 2441 6.634805 TCTTCTAAGACTAGCCACAATGAAG 58.365 40.000 0.00 0.00 0.00 3.02
2326 2442 6.437477 TCTTCTAAGACTAGCCACAATGAAGA 59.563 38.462 0.00 0.00 35.39 2.87
2327 2443 6.605471 TCTAAGACTAGCCACAATGAAGAA 57.395 37.500 0.00 0.00 0.00 2.52
2328 2444 7.187824 TCTAAGACTAGCCACAATGAAGAAT 57.812 36.000 0.00 0.00 0.00 2.40
2329 2445 8.306313 TCTAAGACTAGCCACAATGAAGAATA 57.694 34.615 0.00 0.00 0.00 1.75
2330 2446 8.758829 TCTAAGACTAGCCACAATGAAGAATAA 58.241 33.333 0.00 0.00 0.00 1.40
2331 2447 7.617041 AAGACTAGCCACAATGAAGAATAAC 57.383 36.000 0.00 0.00 0.00 1.89
2332 2448 6.711277 AGACTAGCCACAATGAAGAATAACA 58.289 36.000 0.00 0.00 0.00 2.41
2333 2449 7.341805 AGACTAGCCACAATGAAGAATAACAT 58.658 34.615 0.00 0.00 0.00 2.71
2334 2450 8.486210 AGACTAGCCACAATGAAGAATAACATA 58.514 33.333 0.00 0.00 0.00 2.29
2335 2451 8.438676 ACTAGCCACAATGAAGAATAACATAC 57.561 34.615 0.00 0.00 0.00 2.39
2336 2452 8.046708 ACTAGCCACAATGAAGAATAACATACA 58.953 33.333 0.00 0.00 0.00 2.29
2337 2453 7.088589 AGCCACAATGAAGAATAACATACAC 57.911 36.000 0.00 0.00 0.00 2.90
2338 2454 6.886459 AGCCACAATGAAGAATAACATACACT 59.114 34.615 0.00 0.00 0.00 3.55
2339 2455 8.046708 AGCCACAATGAAGAATAACATACACTA 58.953 33.333 0.00 0.00 0.00 2.74
2340 2456 8.338259 GCCACAATGAAGAATAACATACACTAG 58.662 37.037 0.00 0.00 0.00 2.57
2341 2457 9.383519 CCACAATGAAGAATAACATACACTAGT 57.616 33.333 0.00 0.00 0.00 2.57
2385 2501 8.605325 AACTATGTTACTACCTTCATAGTGGT 57.395 34.615 14.50 0.00 46.51 4.16
2386 2502 8.605325 ACTATGTTACTACCTTCATAGTGGTT 57.395 34.615 13.45 0.00 45.91 3.67
2387 2503 9.705103 ACTATGTTACTACCTTCATAGTGGTTA 57.295 33.333 13.45 0.00 45.91 2.85
2389 2505 8.605325 ATGTTACTACCTTCATAGTGGTTAGT 57.395 34.615 0.00 0.00 36.09 2.24
2390 2506 9.705103 ATGTTACTACCTTCATAGTGGTTAGTA 57.295 33.333 0.00 0.00 36.09 1.82
2391 2507 9.532494 TGTTACTACCTTCATAGTGGTTAGTAA 57.468 33.333 0.00 0.00 36.09 2.24
2394 2510 8.426569 ACTACCTTCATAGTGGTTAGTAAACA 57.573 34.615 0.00 0.00 37.34 2.83
2395 2511 9.043548 ACTACCTTCATAGTGGTTAGTAAACAT 57.956 33.333 3.46 0.00 37.34 2.71
2406 2522 9.969001 AGTGGTTAGTAAACATAAATATGGTGT 57.031 29.630 3.46 0.00 38.00 4.16
2408 2524 9.961264 TGGTTAGTAAACATAAATATGGTGTCA 57.039 29.630 0.00 0.00 38.00 3.58
2412 2528 8.518430 AGTAAACATAAATATGGTGTCATGCA 57.482 30.769 5.48 0.00 38.00 3.96
2413 2529 8.965819 AGTAAACATAAATATGGTGTCATGCAA 58.034 29.630 5.48 0.00 38.00 4.08
2414 2530 9.579768 GTAAACATAAATATGGTGTCATGCAAA 57.420 29.630 5.48 0.00 38.00 3.68
2415 2531 8.706492 AAACATAAATATGGTGTCATGCAAAG 57.294 30.769 5.48 0.00 38.00 2.77
2416 2532 6.275335 ACATAAATATGGTGTCATGCAAAGC 58.725 36.000 5.48 0.00 38.00 3.51
2417 2533 6.097270 ACATAAATATGGTGTCATGCAAAGCT 59.903 34.615 5.48 0.00 38.00 3.74
2418 2534 5.410355 AAATATGGTGTCATGCAAAGCTT 57.590 34.783 0.00 0.00 34.96 3.74
2419 2535 4.644103 ATATGGTGTCATGCAAAGCTTC 57.356 40.909 0.00 0.00 34.96 3.86
2420 2536 1.689984 TGGTGTCATGCAAAGCTTCA 58.310 45.000 0.00 0.00 0.00 3.02
2421 2537 2.241160 TGGTGTCATGCAAAGCTTCAT 58.759 42.857 0.00 0.00 0.00 2.57
2422 2538 2.629137 TGGTGTCATGCAAAGCTTCATT 59.371 40.909 0.00 0.00 0.00 2.57
2423 2539 3.069872 TGGTGTCATGCAAAGCTTCATTT 59.930 39.130 0.00 0.00 0.00 2.32
2424 2540 4.280425 TGGTGTCATGCAAAGCTTCATTTA 59.720 37.500 0.00 0.00 0.00 1.40
2425 2541 5.047164 TGGTGTCATGCAAAGCTTCATTTAT 60.047 36.000 0.00 0.00 0.00 1.40
2426 2542 5.870978 GGTGTCATGCAAAGCTTCATTTATT 59.129 36.000 0.00 0.00 0.00 1.40
2427 2543 7.035004 GGTGTCATGCAAAGCTTCATTTATTA 58.965 34.615 0.00 0.00 0.00 0.98
2428 2544 7.221452 GGTGTCATGCAAAGCTTCATTTATTAG 59.779 37.037 0.00 0.00 0.00 1.73
2429 2545 7.221452 GTGTCATGCAAAGCTTCATTTATTAGG 59.779 37.037 0.00 0.00 0.00 2.69
2430 2546 7.093814 TGTCATGCAAAGCTTCATTTATTAGGT 60.094 33.333 0.00 0.00 0.00 3.08
2431 2547 7.761249 GTCATGCAAAGCTTCATTTATTAGGTT 59.239 33.333 0.00 0.00 0.00 3.50
2432 2548 8.965819 TCATGCAAAGCTTCATTTATTAGGTTA 58.034 29.630 0.00 0.00 0.00 2.85
2433 2549 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
2434 2550 9.971922 ATGCAAAGCTTCATTTATTAGGTTATC 57.028 29.630 0.00 0.00 0.00 1.75
2435 2551 8.965819 TGCAAAGCTTCATTTATTAGGTTATCA 58.034 29.630 0.00 0.00 0.00 2.15
2436 2552 9.237846 GCAAAGCTTCATTTATTAGGTTATCAC 57.762 33.333 0.00 0.00 0.00 3.06
2452 2568 8.367660 AGGTTATCACTACTGAAATCAGAAGA 57.632 34.615 16.93 8.79 46.59 2.87
2453 2569 8.986991 AGGTTATCACTACTGAAATCAGAAGAT 58.013 33.333 16.93 14.08 46.59 2.40
2454 2570 9.606631 GGTTATCACTACTGAAATCAGAAGATT 57.393 33.333 16.93 0.00 46.59 2.40
2464 2580 4.650754 AATCAGAAGATTTGCCATCAGC 57.349 40.909 0.00 0.00 41.64 4.26
2465 2581 3.361281 TCAGAAGATTTGCCATCAGCT 57.639 42.857 0.00 0.00 44.23 4.24
2466 2582 4.492494 TCAGAAGATTTGCCATCAGCTA 57.508 40.909 0.00 0.00 44.23 3.32
2467 2583 4.194640 TCAGAAGATTTGCCATCAGCTAC 58.805 43.478 0.00 0.00 44.23 3.58
2468 2584 4.080695 TCAGAAGATTTGCCATCAGCTACT 60.081 41.667 0.00 0.00 44.23 2.57
2469 2585 4.639310 CAGAAGATTTGCCATCAGCTACTT 59.361 41.667 0.00 0.00 44.23 2.24
2470 2586 4.880696 AGAAGATTTGCCATCAGCTACTTC 59.119 41.667 0.00 0.00 44.23 3.01
2471 2587 4.500499 AGATTTGCCATCAGCTACTTCT 57.500 40.909 0.00 0.00 44.23 2.85
2472 2588 4.853007 AGATTTGCCATCAGCTACTTCTT 58.147 39.130 0.00 0.00 44.23 2.52
2473 2589 5.259632 AGATTTGCCATCAGCTACTTCTTT 58.740 37.500 0.00 0.00 44.23 2.52
2474 2590 6.418101 AGATTTGCCATCAGCTACTTCTTTA 58.582 36.000 0.00 0.00 44.23 1.85
2475 2591 5.880054 TTTGCCATCAGCTACTTCTTTAC 57.120 39.130 0.00 0.00 44.23 2.01
2476 2592 3.873910 TGCCATCAGCTACTTCTTTACC 58.126 45.455 0.00 0.00 44.23 2.85
2477 2593 2.866762 GCCATCAGCTACTTCTTTACCG 59.133 50.000 0.00 0.00 38.99 4.02
2478 2594 3.679083 GCCATCAGCTACTTCTTTACCGT 60.679 47.826 0.00 0.00 38.99 4.83
2479 2595 4.113354 CCATCAGCTACTTCTTTACCGTC 58.887 47.826 0.00 0.00 0.00 4.79
2480 2596 4.142138 CCATCAGCTACTTCTTTACCGTCT 60.142 45.833 0.00 0.00 0.00 4.18
2481 2597 4.436242 TCAGCTACTTCTTTACCGTCTG 57.564 45.455 0.00 0.00 0.00 3.51
2482 2598 2.924290 CAGCTACTTCTTTACCGTCTGC 59.076 50.000 0.00 0.00 0.00 4.26
2483 2599 2.826725 AGCTACTTCTTTACCGTCTGCT 59.173 45.455 0.00 0.00 0.00 4.24
2484 2600 3.258622 AGCTACTTCTTTACCGTCTGCTT 59.741 43.478 0.00 0.00 0.00 3.91
2485 2601 3.368236 GCTACTTCTTTACCGTCTGCTTG 59.632 47.826 0.00 0.00 0.00 4.01
2486 2602 2.143925 ACTTCTTTACCGTCTGCTTGC 58.856 47.619 0.00 0.00 0.00 4.01
2487 2603 1.464997 CTTCTTTACCGTCTGCTTGCC 59.535 52.381 0.00 0.00 0.00 4.52
2488 2604 0.669318 TCTTTACCGTCTGCTTGCCG 60.669 55.000 0.00 0.00 0.00 5.69
2489 2605 0.949105 CTTTACCGTCTGCTTGCCGT 60.949 55.000 0.00 0.00 0.00 5.68
2490 2606 0.947180 TTTACCGTCTGCTTGCCGTC 60.947 55.000 0.00 0.00 0.00 4.79
2491 2607 2.089887 TTACCGTCTGCTTGCCGTCA 62.090 55.000 0.00 0.00 0.00 4.35
2492 2608 2.486636 TACCGTCTGCTTGCCGTCAG 62.487 60.000 0.00 0.00 0.00 3.51
2493 2609 3.782244 CGTCTGCTTGCCGTCAGC 61.782 66.667 0.00 0.00 44.14 4.26
2494 2610 2.358003 GTCTGCTTGCCGTCAGCT 60.358 61.111 0.00 0.00 44.23 4.24
2495 2611 1.963338 GTCTGCTTGCCGTCAGCTT 60.963 57.895 0.00 0.00 44.23 3.74
2496 2612 1.669115 TCTGCTTGCCGTCAGCTTC 60.669 57.895 0.00 0.00 44.23 3.86
2497 2613 2.669569 TGCTTGCCGTCAGCTTCC 60.670 61.111 0.00 0.00 44.23 3.46
2498 2614 2.669569 GCTTGCCGTCAGCTTCCA 60.670 61.111 0.00 0.00 44.23 3.53
2499 2615 2.684843 GCTTGCCGTCAGCTTCCAG 61.685 63.158 0.00 0.00 44.23 3.86
2500 2616 1.004560 CTTGCCGTCAGCTTCCAGA 60.005 57.895 0.00 0.00 44.23 3.86
2501 2617 0.603707 CTTGCCGTCAGCTTCCAGAA 60.604 55.000 0.00 0.00 44.23 3.02
2502 2618 0.179032 TTGCCGTCAGCTTCCAGAAA 60.179 50.000 0.00 0.00 44.23 2.52
2503 2619 0.179032 TGCCGTCAGCTTCCAGAAAA 60.179 50.000 0.00 0.00 44.23 2.29
2504 2620 0.238553 GCCGTCAGCTTCCAGAAAAC 59.761 55.000 0.00 0.00 38.99 2.43
2505 2621 1.593196 CCGTCAGCTTCCAGAAAACA 58.407 50.000 0.00 0.00 0.00 2.83
2506 2622 1.532868 CCGTCAGCTTCCAGAAAACAG 59.467 52.381 0.00 0.00 0.00 3.16
2507 2623 2.483876 CGTCAGCTTCCAGAAAACAGA 58.516 47.619 0.00 0.00 0.00 3.41
2508 2624 2.872245 CGTCAGCTTCCAGAAAACAGAA 59.128 45.455 0.00 0.00 0.00 3.02
2509 2625 3.059325 CGTCAGCTTCCAGAAAACAGAAG 60.059 47.826 0.00 0.00 39.99 2.85
2510 2626 4.130118 GTCAGCTTCCAGAAAACAGAAGA 58.870 43.478 3.28 0.00 39.50 2.87
2511 2627 4.024472 GTCAGCTTCCAGAAAACAGAAGAC 60.024 45.833 3.28 0.00 39.50 3.01
2512 2628 3.879295 CAGCTTCCAGAAAACAGAAGACA 59.121 43.478 3.28 0.00 39.50 3.41
2513 2629 4.336433 CAGCTTCCAGAAAACAGAAGACAA 59.664 41.667 3.28 0.00 39.50 3.18
2514 2630 4.949856 AGCTTCCAGAAAACAGAAGACAAA 59.050 37.500 3.28 0.00 39.50 2.83
2515 2631 5.067023 AGCTTCCAGAAAACAGAAGACAAAG 59.933 40.000 3.28 0.00 39.50 2.77
2516 2632 4.900635 TCCAGAAAACAGAAGACAAAGC 57.099 40.909 0.00 0.00 0.00 3.51
2517 2633 4.526970 TCCAGAAAACAGAAGACAAAGCT 58.473 39.130 0.00 0.00 0.00 3.74
2518 2634 4.336433 TCCAGAAAACAGAAGACAAAGCTG 59.664 41.667 0.00 0.00 35.81 4.24
2519 2635 4.096984 CCAGAAAACAGAAGACAAAGCTGT 59.903 41.667 0.00 0.00 44.15 4.40
2520 2636 5.032863 CAGAAAACAGAAGACAAAGCTGTG 58.967 41.667 1.09 1.09 41.65 3.66
2521 2637 4.096984 AGAAAACAGAAGACAAAGCTGTGG 59.903 41.667 9.18 0.00 41.65 4.17
2522 2638 1.312815 ACAGAAGACAAAGCTGTGGC 58.687 50.000 9.18 4.86 41.02 5.01
2537 2653 3.983229 TGGCTGATGGCAAAGATCA 57.017 47.368 4.85 0.00 46.03 2.92
2538 2654 2.447408 TGGCTGATGGCAAAGATCAT 57.553 45.000 4.85 0.00 46.03 2.45
2539 2655 2.742348 TGGCTGATGGCAAAGATCATT 58.258 42.857 4.85 0.00 46.03 2.57
2540 2656 3.900971 TGGCTGATGGCAAAGATCATTA 58.099 40.909 4.85 0.00 46.03 1.90
2541 2657 4.476297 TGGCTGATGGCAAAGATCATTAT 58.524 39.130 4.85 0.00 46.03 1.28
2542 2658 4.897076 TGGCTGATGGCAAAGATCATTATT 59.103 37.500 4.85 0.00 46.03 1.40
2543 2659 5.364446 TGGCTGATGGCAAAGATCATTATTT 59.636 36.000 4.85 0.00 46.03 1.40
2544 2660 5.694910 GGCTGATGGCAAAGATCATTATTTG 59.305 40.000 4.85 0.00 44.01 2.32
2552 2668 6.764877 CAAAGATCATTATTTGCCATCAGC 57.235 37.500 0.00 0.00 44.14 4.26
2553 2669 5.464030 AAGATCATTATTTGCCATCAGCC 57.536 39.130 0.00 0.00 42.71 4.85
2554 2670 4.476297 AGATCATTATTTGCCATCAGCCA 58.524 39.130 0.00 0.00 42.71 4.75
2555 2671 4.280174 AGATCATTATTTGCCATCAGCCAC 59.720 41.667 0.00 0.00 42.71 5.01
2556 2672 3.634504 TCATTATTTGCCATCAGCCACT 58.365 40.909 0.00 0.00 42.71 4.00
2557 2673 4.025360 TCATTATTTGCCATCAGCCACTT 58.975 39.130 0.00 0.00 42.71 3.16
2558 2674 4.098349 TCATTATTTGCCATCAGCCACTTC 59.902 41.667 0.00 0.00 42.71 3.01
2559 2675 2.226962 ATTTGCCATCAGCCACTTCT 57.773 45.000 0.00 0.00 42.71 2.85
2560 2676 1.999648 TTTGCCATCAGCCACTTCTT 58.000 45.000 0.00 0.00 42.71 2.52
2561 2677 1.999648 TTGCCATCAGCCACTTCTTT 58.000 45.000 0.00 0.00 42.71 2.52
2562 2678 1.250328 TGCCATCAGCCACTTCTTTG 58.750 50.000 0.00 0.00 42.71 2.77
2563 2679 0.108945 GCCATCAGCCACTTCTTTGC 60.109 55.000 0.00 0.00 34.35 3.68
2564 2680 0.529378 CCATCAGCCACTTCTTTGCC 59.471 55.000 0.00 0.00 0.00 4.52
2565 2681 0.169672 CATCAGCCACTTCTTTGCCG 59.830 55.000 0.00 0.00 0.00 5.69
2566 2682 0.250901 ATCAGCCACTTCTTTGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
2567 2683 0.884704 TCAGCCACTTCTTTGCCGTC 60.885 55.000 0.00 0.00 0.00 4.79
2568 2684 0.886490 CAGCCACTTCTTTGCCGTCT 60.886 55.000 0.00 0.00 0.00 4.18
2569 2685 0.886490 AGCCACTTCTTTGCCGTCTG 60.886 55.000 0.00 0.00 0.00 3.51
2570 2686 1.576421 CCACTTCTTTGCCGTCTGC 59.424 57.895 0.00 0.00 41.77 4.26
2571 2687 0.886490 CCACTTCTTTGCCGTCTGCT 60.886 55.000 0.00 0.00 42.00 4.24
2572 2688 0.236711 CACTTCTTTGCCGTCTGCTG 59.763 55.000 0.00 0.00 42.00 4.41
2573 2689 0.886490 ACTTCTTTGCCGTCTGCTGG 60.886 55.000 0.00 0.00 42.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
321 328 1.736586 CGGACCTCATTCCTCCTCG 59.263 63.158 0.00 0.00 32.88 4.63
335 351 0.247185 TAAACCATGACGACCCGGAC 59.753 55.000 0.73 0.00 0.00 4.79
351 367 2.379972 CCAACAACCACCACCAGTAAA 58.620 47.619 0.00 0.00 0.00 2.01
381 397 1.067212 ACTTCAGTCTTCACGAGCGTT 59.933 47.619 0.00 0.00 0.00 4.84
385 401 3.355626 TCACACTTCAGTCTTCACGAG 57.644 47.619 0.00 0.00 0.00 4.18
386 402 3.317993 TGATCACACTTCAGTCTTCACGA 59.682 43.478 0.00 0.00 0.00 4.35
387 403 3.642705 TGATCACACTTCAGTCTTCACG 58.357 45.455 0.00 0.00 0.00 4.35
388 404 4.084118 GCTTGATCACACTTCAGTCTTCAC 60.084 45.833 0.00 0.00 0.00 3.18
421 444 2.073816 ACCAGGAAACAAATACGAGCG 58.926 47.619 0.00 0.00 0.00 5.03
448 471 1.192146 TCAGCTCACCTACCCACCAC 61.192 60.000 0.00 0.00 0.00 4.16
449 472 0.252696 ATCAGCTCACCTACCCACCA 60.253 55.000 0.00 0.00 0.00 4.17
450 473 0.179000 CATCAGCTCACCTACCCACC 59.821 60.000 0.00 0.00 0.00 4.61
542 571 4.096003 AGGCGGATCAACCACCGG 62.096 66.667 0.00 0.00 44.95 5.28
671 700 0.463654 AATGGAGCGCGCCAGAATAA 60.464 50.000 35.47 13.62 42.15 1.40
701 731 3.270027 CATTGAATGCCACCTACGAAGA 58.730 45.455 0.00 0.00 0.00 2.87
743 773 4.316645 ACATGCACTGCTGATCATCTATC 58.683 43.478 1.98 0.00 34.93 2.08
763 807 1.908344 TACTGCTGGTACACCGTACA 58.092 50.000 6.62 0.00 39.43 2.90
764 808 3.515330 ATTACTGCTGGTACACCGTAC 57.485 47.619 0.00 0.00 39.43 3.67
765 809 4.706476 ACTAATTACTGCTGGTACACCGTA 59.294 41.667 0.00 0.00 39.43 4.02
766 810 3.512724 ACTAATTACTGCTGGTACACCGT 59.487 43.478 0.00 0.00 39.43 4.83
767 811 3.863424 CACTAATTACTGCTGGTACACCG 59.137 47.826 0.00 0.00 39.43 4.94
768 812 4.630069 CACACTAATTACTGCTGGTACACC 59.370 45.833 0.00 0.00 0.00 4.16
769 813 5.120208 CACACACTAATTACTGCTGGTACAC 59.880 44.000 0.00 0.00 0.00 2.90
813 857 1.773391 AGATGATCTGGGGCCTGGG 60.773 63.158 0.84 0.00 0.00 4.45
814 858 1.759881 GAGATGATCTGGGGCCTGG 59.240 63.158 0.00 0.00 0.00 4.45
815 859 1.370437 CGAGATGATCTGGGGCCTG 59.630 63.158 0.00 0.00 0.00 4.85
816 860 1.074926 ACGAGATGATCTGGGGCCT 60.075 57.895 9.28 0.00 0.00 5.19
817 861 1.118356 AGACGAGATGATCTGGGGCC 61.118 60.000 9.28 0.00 0.00 5.80
818 862 0.316841 GAGACGAGATGATCTGGGGC 59.683 60.000 9.28 0.00 0.00 5.80
819 863 1.697284 TGAGACGAGATGATCTGGGG 58.303 55.000 9.28 0.00 0.00 4.96
879 940 1.625818 GTTCTCTCTGCCCTCTTTCCA 59.374 52.381 0.00 0.00 0.00 3.53
881 942 1.273886 ACGTTCTCTCTGCCCTCTTTC 59.726 52.381 0.00 0.00 0.00 2.62
882 943 1.001406 CACGTTCTCTCTGCCCTCTTT 59.999 52.381 0.00 0.00 0.00 2.52
885 946 0.109039 GTCACGTTCTCTCTGCCCTC 60.109 60.000 0.00 0.00 0.00 4.30
886 947 1.867919 CGTCACGTTCTCTCTGCCCT 61.868 60.000 0.00 0.00 0.00 5.19
887 948 1.444553 CGTCACGTTCTCTCTGCCC 60.445 63.158 0.00 0.00 0.00 5.36
888 949 2.089349 GCGTCACGTTCTCTCTGCC 61.089 63.158 0.00 0.00 0.00 4.85
943 1004 4.894784 TCGGCCCTCTTAAATGATGATAC 58.105 43.478 0.00 0.00 0.00 2.24
944 1005 4.020218 CCTCGGCCCTCTTAAATGATGATA 60.020 45.833 0.00 0.00 0.00 2.15
945 1006 3.244700 CCTCGGCCCTCTTAAATGATGAT 60.245 47.826 0.00 0.00 0.00 2.45
946 1007 2.104792 CCTCGGCCCTCTTAAATGATGA 59.895 50.000 0.00 0.00 0.00 2.92
947 1008 2.498167 CCTCGGCCCTCTTAAATGATG 58.502 52.381 0.00 0.00 0.00 3.07
948 1009 1.421646 CCCTCGGCCCTCTTAAATGAT 59.578 52.381 0.00 0.00 0.00 2.45
961 1022 3.804638 TATCGTCCCTCCCCTCGGC 62.805 68.421 0.00 0.00 0.00 5.54
991 1057 2.045045 CACGGCCATGATGGTGGT 60.045 61.111 13.84 8.45 40.46 4.16
1015 1085 2.196925 CGCCGAGCATAGGAGAGGT 61.197 63.158 0.00 0.00 31.02 3.85
1086 1156 1.371183 CTGGTCCAGCGGTGAAGAA 59.629 57.895 17.83 0.00 0.00 2.52
1554 1627 1.210234 CAGGTGGTAGACATGGATGCA 59.790 52.381 0.00 0.00 32.48 3.96
1567 1640 0.541998 TGATCGAGTGGTCAGGTGGT 60.542 55.000 0.00 0.00 0.00 4.16
1613 1690 8.008844 GCACAAATACACCATTAAAACATTGTG 58.991 33.333 0.00 0.00 43.94 3.33
1667 1744 4.096682 ACGAGAGTTTAGCTACATCTCACC 59.903 45.833 20.67 11.88 46.40 4.02
1741 1845 4.769063 TGTACACATGCCCCCGCG 62.769 66.667 0.00 0.00 38.08 6.46
1781 1885 2.233271 GGATCATCAATGGCAACCGAT 58.767 47.619 0.00 0.00 0.00 4.18
1782 1886 1.064832 TGGATCATCAATGGCAACCGA 60.065 47.619 0.00 0.00 0.00 4.69
1804 1908 0.801251 AGACGACGTACAGTGCCTAC 59.199 55.000 0.00 0.00 0.00 3.18
1817 1921 8.287503 ACCATTTTAAAGTGATGTTTAGACGAC 58.712 33.333 11.94 0.00 0.00 4.34
1848 1952 3.458189 CCTTACGCTATCTGAAAGTGGG 58.542 50.000 0.00 0.00 33.76 4.61
1875 1979 9.213777 TCATCTAAACATCTAGTACCAATTCCT 57.786 33.333 0.00 0.00 0.00 3.36
1882 1986 7.661968 TGCATCTCATCTAAACATCTAGTACC 58.338 38.462 0.00 0.00 0.00 3.34
1952 2063 5.715753 TCCTCTTCCTTCAACTACCTACTTC 59.284 44.000 0.00 0.00 0.00 3.01
1957 2068 4.689062 TCATCCTCTTCCTTCAACTACCT 58.311 43.478 0.00 0.00 0.00 3.08
1991 2107 8.475331 AGAGGTGTAGTAAACATTGTTTATCG 57.525 34.615 21.42 0.00 41.10 2.92
2055 2171 9.986833 TGTTCATTCATTTCAATTCGTATGTAG 57.013 29.630 0.00 0.00 0.00 2.74
2075 2191 7.968405 GCGACCAGTTTAAGATTATTTGTTCAT 59.032 33.333 0.00 0.00 0.00 2.57
2137 2253 4.842531 TGGAGTATTGAGATTGGAAGCA 57.157 40.909 0.00 0.00 0.00 3.91
2138 2254 7.164122 TGATATGGAGTATTGAGATTGGAAGC 58.836 38.462 0.00 0.00 0.00 3.86
2139 2255 7.333921 GCTGATATGGAGTATTGAGATTGGAAG 59.666 40.741 0.00 0.00 0.00 3.46
2140 2256 7.164122 GCTGATATGGAGTATTGAGATTGGAA 58.836 38.462 0.00 0.00 0.00 3.53
2141 2257 6.270695 TGCTGATATGGAGTATTGAGATTGGA 59.729 38.462 0.00 0.00 0.00 3.53
2142 2258 6.470278 TGCTGATATGGAGTATTGAGATTGG 58.530 40.000 0.00 0.00 0.00 3.16
2143 2259 7.361031 GCTTGCTGATATGGAGTATTGAGATTG 60.361 40.741 0.00 0.00 0.00 2.67
2144 2260 6.654161 GCTTGCTGATATGGAGTATTGAGATT 59.346 38.462 0.00 0.00 0.00 2.40
2145 2261 6.171921 GCTTGCTGATATGGAGTATTGAGAT 58.828 40.000 0.00 0.00 0.00 2.75
2146 2262 5.070847 TGCTTGCTGATATGGAGTATTGAGA 59.929 40.000 0.00 0.00 0.00 3.27
2147 2263 5.178996 GTGCTTGCTGATATGGAGTATTGAG 59.821 44.000 0.00 0.00 0.00 3.02
2148 2264 5.059161 GTGCTTGCTGATATGGAGTATTGA 58.941 41.667 0.00 0.00 0.00 2.57
2149 2265 5.061853 AGTGCTTGCTGATATGGAGTATTG 58.938 41.667 0.00 0.00 0.00 1.90
2150 2266 5.301835 AGTGCTTGCTGATATGGAGTATT 57.698 39.130 0.00 0.00 0.00 1.89
2151 2267 4.970860 AGTGCTTGCTGATATGGAGTAT 57.029 40.909 0.00 0.00 0.00 2.12
2152 2268 4.281941 CCTAGTGCTTGCTGATATGGAGTA 59.718 45.833 0.00 0.00 0.00 2.59
2153 2269 3.070734 CCTAGTGCTTGCTGATATGGAGT 59.929 47.826 0.00 0.00 0.00 3.85
2154 2270 3.556633 CCCTAGTGCTTGCTGATATGGAG 60.557 52.174 0.00 0.00 0.00 3.86
2155 2271 2.369860 CCCTAGTGCTTGCTGATATGGA 59.630 50.000 0.00 0.00 0.00 3.41
2156 2272 2.105477 ACCCTAGTGCTTGCTGATATGG 59.895 50.000 0.00 0.00 0.00 2.74
2157 2273 3.136763 CACCCTAGTGCTTGCTGATATG 58.863 50.000 0.00 0.00 37.14 1.78
2158 2274 2.105477 CCACCCTAGTGCTTGCTGATAT 59.895 50.000 0.00 0.00 43.09 1.63
2159 2275 1.486310 CCACCCTAGTGCTTGCTGATA 59.514 52.381 0.00 0.00 43.09 2.15
2160 2276 0.254178 CCACCCTAGTGCTTGCTGAT 59.746 55.000 0.00 0.00 43.09 2.90
2161 2277 1.679311 CCACCCTAGTGCTTGCTGA 59.321 57.895 0.00 0.00 43.09 4.26
2162 2278 1.377725 CCCACCCTAGTGCTTGCTG 60.378 63.158 0.00 0.00 43.09 4.41
2163 2279 3.081554 CCCACCCTAGTGCTTGCT 58.918 61.111 0.00 0.00 43.09 3.91
2164 2280 2.751837 GCCCACCCTAGTGCTTGC 60.752 66.667 0.00 0.00 43.09 4.01
2165 2281 2.044946 GGCCCACCCTAGTGCTTG 60.045 66.667 0.00 0.00 43.09 4.01
2175 2291 4.062032 GGAAGGAAGGGGCCCACC 62.062 72.222 27.72 26.16 39.11 4.61
2176 2292 4.062032 GGGAAGGAAGGGGCCCAC 62.062 72.222 27.72 18.14 40.39 4.61
2177 2293 4.301662 AGGGAAGGAAGGGGCCCA 62.302 66.667 27.72 0.00 43.20 5.36
2178 2294 3.744155 CAGGGAAGGAAGGGGCCC 61.744 72.222 17.12 17.12 41.00 5.80
2179 2295 4.448976 GCAGGGAAGGAAGGGGCC 62.449 72.222 0.00 0.00 0.00 5.80
2180 2296 2.845638 GAAGCAGGGAAGGAAGGGGC 62.846 65.000 0.00 0.00 0.00 5.80
2181 2297 1.304617 GAAGCAGGGAAGGAAGGGG 59.695 63.158 0.00 0.00 0.00 4.79
2182 2298 1.304617 GGAAGCAGGGAAGGAAGGG 59.695 63.158 0.00 0.00 0.00 3.95
2183 2299 0.405585 TTGGAAGCAGGGAAGGAAGG 59.594 55.000 0.00 0.00 0.00 3.46
2184 2300 2.025510 AGATTGGAAGCAGGGAAGGAAG 60.026 50.000 0.00 0.00 0.00 3.46
2185 2301 1.995542 AGATTGGAAGCAGGGAAGGAA 59.004 47.619 0.00 0.00 0.00 3.36
2186 2302 1.561542 GAGATTGGAAGCAGGGAAGGA 59.438 52.381 0.00 0.00 0.00 3.36
2187 2303 1.283029 TGAGATTGGAAGCAGGGAAGG 59.717 52.381 0.00 0.00 0.00 3.46
2188 2304 2.795231 TGAGATTGGAAGCAGGGAAG 57.205 50.000 0.00 0.00 0.00 3.46
2189 2305 3.744940 ATTGAGATTGGAAGCAGGGAA 57.255 42.857 0.00 0.00 0.00 3.97
2190 2306 3.782523 AGTATTGAGATTGGAAGCAGGGA 59.217 43.478 0.00 0.00 0.00 4.20
2191 2307 4.133078 GAGTATTGAGATTGGAAGCAGGG 58.867 47.826 0.00 0.00 0.00 4.45
2192 2308 4.133078 GGAGTATTGAGATTGGAAGCAGG 58.867 47.826 0.00 0.00 0.00 4.85
2193 2309 4.774124 TGGAGTATTGAGATTGGAAGCAG 58.226 43.478 0.00 0.00 0.00 4.24
2194 2310 4.842531 TGGAGTATTGAGATTGGAAGCA 57.157 40.909 0.00 0.00 0.00 3.91
2199 2315 6.470278 TGCTGATATGGAGTATTGAGATTGG 58.530 40.000 0.00 0.00 0.00 3.16
2205 2321 6.040504 ACGTACTTGCTGATATGGAGTATTGA 59.959 38.462 0.00 0.00 0.00 2.57
2207 2323 6.406692 ACGTACTTGCTGATATGGAGTATT 57.593 37.500 0.00 0.00 0.00 1.89
2301 2417 6.437477 TCTTCATTGTGGCTAGTCTTAGAAGA 59.563 38.462 11.44 11.44 36.42 2.87
2302 2418 6.634805 TCTTCATTGTGGCTAGTCTTAGAAG 58.365 40.000 0.00 3.02 0.00 2.85
2303 2419 6.605471 TCTTCATTGTGGCTAGTCTTAGAA 57.395 37.500 0.00 0.00 0.00 2.10
2304 2420 6.605471 TTCTTCATTGTGGCTAGTCTTAGA 57.395 37.500 0.00 0.00 0.00 2.10
2305 2421 8.821894 GTTATTCTTCATTGTGGCTAGTCTTAG 58.178 37.037 0.00 0.00 0.00 2.18
2306 2422 8.318412 TGTTATTCTTCATTGTGGCTAGTCTTA 58.682 33.333 0.00 0.00 0.00 2.10
2307 2423 7.168219 TGTTATTCTTCATTGTGGCTAGTCTT 58.832 34.615 0.00 0.00 0.00 3.01
2308 2424 6.711277 TGTTATTCTTCATTGTGGCTAGTCT 58.289 36.000 0.00 0.00 0.00 3.24
2309 2425 6.985188 TGTTATTCTTCATTGTGGCTAGTC 57.015 37.500 0.00 0.00 0.00 2.59
2310 2426 8.046708 TGTATGTTATTCTTCATTGTGGCTAGT 58.953 33.333 0.00 0.00 0.00 2.57
2311 2427 8.338259 GTGTATGTTATTCTTCATTGTGGCTAG 58.662 37.037 0.00 0.00 0.00 3.42
2312 2428 8.046708 AGTGTATGTTATTCTTCATTGTGGCTA 58.953 33.333 0.00 0.00 0.00 3.93
2313 2429 6.886459 AGTGTATGTTATTCTTCATTGTGGCT 59.114 34.615 0.00 0.00 0.00 4.75
2314 2430 7.088589 AGTGTATGTTATTCTTCATTGTGGC 57.911 36.000 0.00 0.00 0.00 5.01
2315 2431 9.383519 ACTAGTGTATGTTATTCTTCATTGTGG 57.616 33.333 0.00 0.00 0.00 4.17
2363 2479 9.705103 ACTAACCACTATGAAGGTAGTAACATA 57.295 33.333 0.00 0.00 37.07 2.29
2364 2480 8.605325 ACTAACCACTATGAAGGTAGTAACAT 57.395 34.615 0.00 0.00 37.07 2.71
2365 2481 9.532494 TTACTAACCACTATGAAGGTAGTAACA 57.468 33.333 3.43 0.00 37.07 2.41
2368 2484 9.532494 TGTTTACTAACCACTATGAAGGTAGTA 57.468 33.333 0.00 0.00 37.07 1.82
2369 2485 8.426569 TGTTTACTAACCACTATGAAGGTAGT 57.573 34.615 0.00 0.00 37.07 2.73
2380 2496 9.969001 ACACCATATTTATGTTTACTAACCACT 57.031 29.630 0.00 0.00 33.15 4.00
2382 2498 9.961264 TGACACCATATTTATGTTTACTAACCA 57.039 29.630 0.00 0.00 33.15 3.67
2386 2502 9.620259 TGCATGACACCATATTTATGTTTACTA 57.380 29.630 0.00 0.00 31.82 1.82
2387 2503 8.518430 TGCATGACACCATATTTATGTTTACT 57.482 30.769 0.00 0.00 31.82 2.24
2388 2504 9.579768 TTTGCATGACACCATATTTATGTTTAC 57.420 29.630 0.00 0.00 31.82 2.01
2389 2505 9.800433 CTTTGCATGACACCATATTTATGTTTA 57.200 29.630 0.00 0.00 31.82 2.01
2390 2506 7.278424 GCTTTGCATGACACCATATTTATGTTT 59.722 33.333 0.00 0.00 31.82 2.83
2391 2507 6.757947 GCTTTGCATGACACCATATTTATGTT 59.242 34.615 0.00 0.00 31.82 2.71
2392 2508 6.097270 AGCTTTGCATGACACCATATTTATGT 59.903 34.615 0.00 0.00 31.82 2.29
2393 2509 6.509656 AGCTTTGCATGACACCATATTTATG 58.490 36.000 0.00 0.00 0.00 1.90
2394 2510 6.720112 AGCTTTGCATGACACCATATTTAT 57.280 33.333 0.00 0.00 0.00 1.40
2395 2511 6.152492 TGAAGCTTTGCATGACACCATATTTA 59.848 34.615 0.00 0.00 0.00 1.40
2396 2512 5.047164 TGAAGCTTTGCATGACACCATATTT 60.047 36.000 0.00 0.00 0.00 1.40
2397 2513 4.463539 TGAAGCTTTGCATGACACCATATT 59.536 37.500 0.00 0.00 0.00 1.28
2398 2514 4.018490 TGAAGCTTTGCATGACACCATAT 58.982 39.130 0.00 0.00 0.00 1.78
2399 2515 3.419943 TGAAGCTTTGCATGACACCATA 58.580 40.909 0.00 0.00 0.00 2.74
2400 2516 2.241160 TGAAGCTTTGCATGACACCAT 58.759 42.857 0.00 0.00 0.00 3.55
2401 2517 1.689984 TGAAGCTTTGCATGACACCA 58.310 45.000 0.00 0.00 0.00 4.17
2402 2518 3.308438 AATGAAGCTTTGCATGACACC 57.692 42.857 0.00 0.00 0.00 4.16
2403 2519 6.956299 AATAAATGAAGCTTTGCATGACAC 57.044 33.333 0.00 0.00 0.00 3.67
2404 2520 7.093814 ACCTAATAAATGAAGCTTTGCATGACA 60.094 33.333 0.00 0.00 0.00 3.58
2405 2521 7.260603 ACCTAATAAATGAAGCTTTGCATGAC 58.739 34.615 0.00 0.00 0.00 3.06
2406 2522 7.408756 ACCTAATAAATGAAGCTTTGCATGA 57.591 32.000 0.00 0.00 0.00 3.07
2407 2523 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
2408 2524 9.971922 GATAACCTAATAAATGAAGCTTTGCAT 57.028 29.630 0.00 0.00 0.00 3.96
2409 2525 8.965819 TGATAACCTAATAAATGAAGCTTTGCA 58.034 29.630 0.00 0.00 0.00 4.08
2410 2526 9.237846 GTGATAACCTAATAAATGAAGCTTTGC 57.762 33.333 0.00 0.00 0.00 3.68
2426 2542 9.475620 TCTTCTGATTTCAGTAGTGATAACCTA 57.524 33.333 12.22 0.00 44.12 3.08
2427 2543 8.367660 TCTTCTGATTTCAGTAGTGATAACCT 57.632 34.615 12.22 0.00 44.12 3.50
2428 2544 9.606631 AATCTTCTGATTTCAGTAGTGATAACC 57.393 33.333 12.22 0.00 44.12 2.85
2431 2547 9.102757 GCAAATCTTCTGATTTCAGTAGTGATA 57.897 33.333 12.22 0.00 46.50 2.15
2432 2548 7.066766 GGCAAATCTTCTGATTTCAGTAGTGAT 59.933 37.037 12.22 7.43 46.50 3.06
2433 2549 6.372659 GGCAAATCTTCTGATTTCAGTAGTGA 59.627 38.462 12.22 0.00 46.50 3.41
2434 2550 6.149973 TGGCAAATCTTCTGATTTCAGTAGTG 59.850 38.462 12.22 6.54 46.50 2.74
2435 2551 6.240894 TGGCAAATCTTCTGATTTCAGTAGT 58.759 36.000 12.22 0.85 46.50 2.73
2436 2552 6.748333 TGGCAAATCTTCTGATTTCAGTAG 57.252 37.500 7.42 7.54 46.50 2.57
2437 2553 6.885918 TGATGGCAAATCTTCTGATTTCAGTA 59.114 34.615 7.42 0.00 46.50 2.74
2438 2554 5.713389 TGATGGCAAATCTTCTGATTTCAGT 59.287 36.000 7.42 0.00 46.50 3.41
2439 2555 6.203808 TGATGGCAAATCTTCTGATTTCAG 57.796 37.500 0.97 0.97 46.50 3.02
2440 2556 5.393787 GCTGATGGCAAATCTTCTGATTTCA 60.394 40.000 0.00 0.00 46.50 2.69
2441 2557 5.041940 GCTGATGGCAAATCTTCTGATTTC 58.958 41.667 0.00 0.00 46.50 2.17
2443 2559 4.279145 AGCTGATGGCAAATCTTCTGATT 58.721 39.130 0.00 0.00 44.79 2.57
2444 2560 3.899726 AGCTGATGGCAAATCTTCTGAT 58.100 40.909 0.00 0.00 44.79 2.90
2445 2561 3.361281 AGCTGATGGCAAATCTTCTGA 57.639 42.857 0.00 0.00 44.79 3.27
2446 2562 4.197750 AGTAGCTGATGGCAAATCTTCTG 58.802 43.478 0.00 0.00 44.79 3.02
2447 2563 4.500499 AGTAGCTGATGGCAAATCTTCT 57.500 40.909 0.00 0.00 44.79 2.85
2448 2564 4.880696 AGAAGTAGCTGATGGCAAATCTTC 59.119 41.667 0.00 0.00 44.79 2.87
2449 2565 4.853007 AGAAGTAGCTGATGGCAAATCTT 58.147 39.130 0.00 0.00 44.79 2.40
2450 2566 4.500499 AGAAGTAGCTGATGGCAAATCT 57.500 40.909 0.00 0.00 44.79 2.40
2451 2567 5.573337 AAAGAAGTAGCTGATGGCAAATC 57.427 39.130 0.00 0.00 44.79 2.17
2452 2568 5.358160 GGTAAAGAAGTAGCTGATGGCAAAT 59.642 40.000 0.00 0.00 44.79 2.32
2453 2569 4.700213 GGTAAAGAAGTAGCTGATGGCAAA 59.300 41.667 0.00 0.00 44.79 3.68
2454 2570 4.261801 GGTAAAGAAGTAGCTGATGGCAA 58.738 43.478 0.00 0.00 44.79 4.52
2455 2571 3.678806 CGGTAAAGAAGTAGCTGATGGCA 60.679 47.826 0.00 0.00 44.79 4.92
2456 2572 2.866762 CGGTAAAGAAGTAGCTGATGGC 59.133 50.000 0.00 0.00 42.19 4.40
2457 2573 4.113354 GACGGTAAAGAAGTAGCTGATGG 58.887 47.826 0.00 0.00 0.00 3.51
2458 2574 4.800993 CAGACGGTAAAGAAGTAGCTGATG 59.199 45.833 0.00 0.00 0.00 3.07
2459 2575 4.678309 GCAGACGGTAAAGAAGTAGCTGAT 60.678 45.833 0.00 0.00 0.00 2.90
2460 2576 3.367087 GCAGACGGTAAAGAAGTAGCTGA 60.367 47.826 0.00 0.00 0.00 4.26
2461 2577 2.924290 GCAGACGGTAAAGAAGTAGCTG 59.076 50.000 0.00 0.00 0.00 4.24
2462 2578 2.826725 AGCAGACGGTAAAGAAGTAGCT 59.173 45.455 0.00 0.00 0.00 3.32
2463 2579 3.233684 AGCAGACGGTAAAGAAGTAGC 57.766 47.619 0.00 0.00 0.00 3.58
2464 2580 3.368236 GCAAGCAGACGGTAAAGAAGTAG 59.632 47.826 0.00 0.00 0.00 2.57
2465 2581 3.323243 GCAAGCAGACGGTAAAGAAGTA 58.677 45.455 0.00 0.00 0.00 2.24
2466 2582 2.143925 GCAAGCAGACGGTAAAGAAGT 58.856 47.619 0.00 0.00 0.00 3.01
2467 2583 1.464997 GGCAAGCAGACGGTAAAGAAG 59.535 52.381 0.00 0.00 0.00 2.85
2468 2584 1.519408 GGCAAGCAGACGGTAAAGAA 58.481 50.000 0.00 0.00 0.00 2.52
2469 2585 3.226884 GGCAAGCAGACGGTAAAGA 57.773 52.632 0.00 0.00 0.00 2.52
2477 2593 1.905922 GAAGCTGACGGCAAGCAGAC 61.906 60.000 9.39 0.00 44.79 3.51
2478 2594 1.669115 GAAGCTGACGGCAAGCAGA 60.669 57.895 9.39 0.00 44.79 4.26
2479 2595 2.684843 GGAAGCTGACGGCAAGCAG 61.685 63.158 9.39 0.00 44.79 4.24
2480 2596 2.669569 GGAAGCTGACGGCAAGCA 60.670 61.111 9.39 0.00 44.79 3.91
2481 2597 2.669569 TGGAAGCTGACGGCAAGC 60.670 61.111 9.39 0.00 44.79 4.01
2482 2598 0.603707 TTCTGGAAGCTGACGGCAAG 60.604 55.000 9.39 0.71 44.79 4.01
2483 2599 0.179032 TTTCTGGAAGCTGACGGCAA 60.179 50.000 9.39 0.00 44.79 4.52
2484 2600 0.179032 TTTTCTGGAAGCTGACGGCA 60.179 50.000 9.39 0.00 44.79 5.69
2485 2601 0.238553 GTTTTCTGGAAGCTGACGGC 59.761 55.000 0.00 0.00 42.19 5.68
2486 2602 1.532868 CTGTTTTCTGGAAGCTGACGG 59.467 52.381 0.00 0.00 0.00 4.79
2487 2603 2.483876 TCTGTTTTCTGGAAGCTGACG 58.516 47.619 0.00 0.00 0.00 4.35
2488 2604 4.024472 GTCTTCTGTTTTCTGGAAGCTGAC 60.024 45.833 0.00 0.00 37.11 3.51
2489 2605 4.130118 GTCTTCTGTTTTCTGGAAGCTGA 58.870 43.478 0.00 0.00 37.11 4.26
2490 2606 3.879295 TGTCTTCTGTTTTCTGGAAGCTG 59.121 43.478 0.00 0.00 37.11 4.24
2491 2607 4.156455 TGTCTTCTGTTTTCTGGAAGCT 57.844 40.909 0.00 0.00 37.11 3.74
2492 2608 4.900635 TTGTCTTCTGTTTTCTGGAAGC 57.099 40.909 0.00 0.00 37.11 3.86
2493 2609 5.067023 AGCTTTGTCTTCTGTTTTCTGGAAG 59.933 40.000 0.00 0.00 38.13 3.46
2494 2610 4.949856 AGCTTTGTCTTCTGTTTTCTGGAA 59.050 37.500 0.00 0.00 0.00 3.53
2495 2611 4.336433 CAGCTTTGTCTTCTGTTTTCTGGA 59.664 41.667 0.00 0.00 0.00 3.86
2496 2612 4.096984 ACAGCTTTGTCTTCTGTTTTCTGG 59.903 41.667 0.00 0.00 37.78 3.86
2497 2613 5.032863 CACAGCTTTGTCTTCTGTTTTCTG 58.967 41.667 0.00 0.00 38.85 3.02
2498 2614 4.096984 CCACAGCTTTGTCTTCTGTTTTCT 59.903 41.667 0.00 0.00 38.85 2.52
2499 2615 4.354587 CCACAGCTTTGTCTTCTGTTTTC 58.645 43.478 0.00 0.00 38.85 2.29
2500 2616 3.429410 GCCACAGCTTTGTCTTCTGTTTT 60.429 43.478 0.00 0.00 38.85 2.43
2501 2617 2.099756 GCCACAGCTTTGTCTTCTGTTT 59.900 45.455 0.00 0.00 38.85 2.83
2502 2618 1.678101 GCCACAGCTTTGTCTTCTGTT 59.322 47.619 0.00 0.00 38.85 3.16
2503 2619 1.312815 GCCACAGCTTTGTCTTCTGT 58.687 50.000 0.00 0.00 41.29 3.41
2515 2631 1.214589 CTTTGCCATCAGCCACAGC 59.785 57.895 0.00 0.00 42.71 4.40
2516 2632 1.404391 GATCTTTGCCATCAGCCACAG 59.596 52.381 0.00 0.00 42.71 3.66
2517 2633 1.272037 TGATCTTTGCCATCAGCCACA 60.272 47.619 0.00 0.00 42.71 4.17
2518 2634 1.466856 TGATCTTTGCCATCAGCCAC 58.533 50.000 0.00 0.00 42.71 5.01
2519 2635 2.447408 ATGATCTTTGCCATCAGCCA 57.553 45.000 0.00 0.00 42.71 4.75
2520 2636 5.464030 AATAATGATCTTTGCCATCAGCC 57.536 39.130 4.17 0.00 42.71 4.85
2521 2637 6.764877 CAAATAATGATCTTTGCCATCAGC 57.235 37.500 4.17 0.00 44.14 4.26
2529 2645 5.694910 GGCTGATGGCAAATAATGATCTTTG 59.305 40.000 4.17 2.87 44.01 2.77
2530 2646 5.364446 TGGCTGATGGCAAATAATGATCTTT 59.636 36.000 0.00 0.00 46.03 2.52
2531 2647 4.897076 TGGCTGATGGCAAATAATGATCTT 59.103 37.500 0.00 0.00 46.03 2.40
2532 2648 4.476297 TGGCTGATGGCAAATAATGATCT 58.524 39.130 0.00 0.00 46.03 2.75
2533 2649 4.859304 TGGCTGATGGCAAATAATGATC 57.141 40.909 0.00 0.00 46.03 2.92
2543 2659 1.250328 CAAAGAAGTGGCTGATGGCA 58.750 50.000 0.00 0.00 46.87 4.92
2544 2660 0.108945 GCAAAGAAGTGGCTGATGGC 60.109 55.000 0.00 0.00 40.90 4.40
2545 2661 0.529378 GGCAAAGAAGTGGCTGATGG 59.471 55.000 0.00 0.00 40.77 3.51
2546 2662 0.169672 CGGCAAAGAAGTGGCTGATG 59.830 55.000 0.00 0.00 41.74 3.07
2547 2663 0.250901 ACGGCAAAGAAGTGGCTGAT 60.251 50.000 0.00 0.00 41.74 2.90
2548 2664 0.884704 GACGGCAAAGAAGTGGCTGA 60.885 55.000 0.00 0.00 41.74 4.26
2549 2665 0.886490 AGACGGCAAAGAAGTGGCTG 60.886 55.000 0.00 0.00 41.74 4.85
2550 2666 0.886490 CAGACGGCAAAGAAGTGGCT 60.886 55.000 0.00 0.00 41.74 4.75
2551 2667 1.576421 CAGACGGCAAAGAAGTGGC 59.424 57.895 0.00 0.00 40.55 5.01
2552 2668 1.576421 GCAGACGGCAAAGAAGTGG 59.424 57.895 0.00 0.00 43.97 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.