Multiple sequence alignment - TraesCS5B01G065600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G065600 chr5B 100.000 5913 0 0 1 5913 73827030 73832942 0.000000e+00 10920.0
1 TraesCS5B01G065600 chr5B 100.000 1425 0 0 6184 7608 73833213 73834637 0.000000e+00 2632.0
2 TraesCS5B01G065600 chr5D 94.920 3327 103 21 445 3722 67861261 67864570 0.000000e+00 5147.0
3 TraesCS5B01G065600 chr5D 95.668 2170 75 8 3747 5913 67864565 67866718 0.000000e+00 3469.0
4 TraesCS5B01G065600 chr5D 93.701 889 31 14 6189 7068 67866748 67867620 0.000000e+00 1308.0
5 TraesCS5B01G065600 chr5D 91.435 432 31 6 7182 7608 67867621 67868051 8.500000e-164 588.0
6 TraesCS5B01G065600 chr5D 95.597 159 6 1 3 160 67860736 67860894 3.520000e-63 254.0
7 TraesCS5B01G065600 chr5D 91.935 62 4 1 110 170 67860781 67860842 1.360000e-12 86.1
8 TraesCS5B01G065600 chr5A 94.751 2934 92 30 448 3338 55661164 55658250 0.000000e+00 4508.0
9 TraesCS5B01G065600 chr5A 94.948 2573 87 15 3352 5913 55658265 55655725 0.000000e+00 3991.0
10 TraesCS5B01G065600 chr5A 92.446 1059 41 17 6189 7219 55655695 55654648 0.000000e+00 1476.0
11 TraesCS5B01G065600 chr5A 100.000 136 0 0 314 449 582620743 582620878 1.270000e-62 252.0
12 TraesCS5B01G065600 chr5A 93.168 161 10 1 1 160 55661686 55661526 1.280000e-57 235.0
13 TraesCS5B01G065600 chr5A 88.235 153 15 2 163 313 55661306 55661155 6.070000e-41 180.0
14 TraesCS5B01G065600 chr5A 85.106 94 11 1 3878 3968 66874396 66874303 8.130000e-15 93.5
15 TraesCS5B01G065600 chr5A 94.000 50 3 0 52 101 55661572 55661523 8.190000e-10 76.8
16 TraesCS5B01G065600 chr4A 100.000 137 0 0 313 449 709216557 709216421 3.520000e-63 254.0
17 TraesCS5B01G065600 chr1A 100.000 137 0 0 314 450 551481909 551482045 3.520000e-63 254.0
18 TraesCS5B01G065600 chr7B 100.000 136 0 0 314 449 7237636 7237501 1.270000e-62 252.0
19 TraesCS5B01G065600 chr7B 99.275 138 1 0 312 449 658202825 658202962 4.560000e-62 250.0
20 TraesCS5B01G065600 chr7B 98.571 140 2 0 313 452 721285984 721286123 1.640000e-61 248.0
21 TraesCS5B01G065600 chr6B 100.000 136 0 0 314 449 60632807 60632672 1.270000e-62 252.0
22 TraesCS5B01G065600 chr6A 100.000 136 0 0 314 449 106697649 106697784 1.270000e-62 252.0
23 TraesCS5B01G065600 chr3B 100.000 135 0 0 314 448 489366384 489366250 4.560000e-62 250.0
24 TraesCS5B01G065600 chr7D 80.064 311 49 13 7202 7506 473644753 473644450 1.290000e-52 219.0
25 TraesCS5B01G065600 chr7A 77.132 258 53 5 7201 7457 522490041 522490293 2.210000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G065600 chr5B 73827030 73834637 7607 False 6776.000000 10920 100.000000 1 7608 2 chr5B.!!$F1 7607
1 TraesCS5B01G065600 chr5D 67860736 67868051 7315 False 1808.683333 5147 93.876000 3 7608 6 chr5D.!!$F1 7605
2 TraesCS5B01G065600 chr5A 55654648 55661686 7038 True 1744.466667 4508 92.924667 1 7219 6 chr5A.!!$R2 7218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 606 0.034089 GCCATACCCTGCCTTTGAGT 60.034 55.000 0.00 0.00 0.00 3.41 F
413 657 0.104120 CCCGTGTGTCAGTGACTCAA 59.896 55.000 25.22 8.92 37.70 3.02 F
1447 1723 0.323451 GTTCTTGGGGCTCCGGATTT 60.323 55.000 3.57 0.00 35.24 2.17 F
1578 1854 0.803768 CTCGAGTTCTGGCGTCATGG 60.804 60.000 3.62 0.00 0.00 3.66 F
2527 2817 1.548081 TTGAGATTGGCATGTGTGGG 58.452 50.000 0.00 0.00 0.00 4.61 F
3036 3339 0.745845 AAATTGATCTCGGCTGCGCT 60.746 50.000 9.73 0.00 0.00 5.92 F
4273 4592 0.824759 CCGTTACTAGGAAGGCTGCT 59.175 55.000 1.59 0.00 0.00 4.24 F
5081 5408 1.452108 GCCACAGATACCTGCCCAC 60.452 63.158 0.00 0.00 44.16 4.61 F
5454 5786 0.030773 TAGCTCATAGAAGGCGCACG 59.969 55.000 10.83 0.00 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1559 1835 0.803768 CCATGACGCCAGAACTCGAG 60.804 60.000 11.84 11.84 0.00 4.04 R
1622 1898 0.938168 AACGAACACGAGGAACGAGC 60.938 55.000 0.00 0.00 45.77 5.03 R
2876 3179 3.871006 TCATAGCGTTGGTGCTTCATTAG 59.129 43.478 0.00 0.00 44.46 1.73 R
2891 3194 4.268644 ACAAGATGTGTCGATTTCATAGCG 59.731 41.667 0.00 0.00 34.38 4.26 R
4273 4592 1.303236 AAGGCCACGTAATGCAGCA 60.303 52.632 5.01 0.00 0.00 4.41 R
4700 5027 1.688772 CATTGGGCTGATCTCCCTTG 58.311 55.000 19.76 14.64 44.23 3.61 R
5176 5503 1.471684 CAAGTGCCAAGAGAAGCCATC 59.528 52.381 0.00 0.00 0.00 3.51 R
6559 6902 0.681733 CCATCACATACTCTCCCCCG 59.318 60.000 0.00 0.00 0.00 5.73 R
7132 7485 0.250640 CCAGGAGCAGAACAGCACTT 60.251 55.000 0.00 0.00 36.85 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 82 5.133707 GTTTCTAACGTGCGTATATTGCA 57.866 39.130 0.00 0.00 40.70 4.08
216 458 7.592736 AGGATCATCATGATATGCCCATTTAT 58.407 34.615 8.15 0.00 37.20 1.40
218 460 8.701895 GGATCATCATGATATGCCCATTTATTT 58.298 33.333 8.15 0.00 37.20 1.40
232 474 7.609146 TGCCCATTTATTTACATTCATGCAAAA 59.391 29.630 0.00 0.00 0.00 2.44
242 484 4.082300 ACATTCATGCAAAAGCGGTTATCA 60.082 37.500 0.00 0.00 0.00 2.15
266 508 4.893608 TGACAGCAAGCAACAACTATCTA 58.106 39.130 0.00 0.00 0.00 1.98
278 522 9.686683 AGCAACAACTATCTACCATCTATTTTT 57.313 29.630 0.00 0.00 0.00 1.94
279 523 9.722056 GCAACAACTATCTACCATCTATTTTTG 57.278 33.333 0.00 0.00 0.00 2.44
298 542 1.339247 TGTGACAACAGTGGAAACGGT 60.339 47.619 0.00 0.00 0.00 4.83
303 547 3.721035 ACAACAGTGGAAACGGTAGTAC 58.279 45.455 0.00 0.00 0.00 2.73
304 548 2.712057 ACAGTGGAAACGGTAGTACG 57.288 50.000 0.00 0.00 40.31 3.67
305 549 1.336240 ACAGTGGAAACGGTAGTACGC 60.336 52.381 0.00 0.00 37.37 4.42
306 550 0.244721 AGTGGAAACGGTAGTACGCC 59.755 55.000 0.00 0.16 37.37 5.68
307 551 0.244721 GTGGAAACGGTAGTACGCCT 59.755 55.000 7.69 0.00 37.37 5.52
308 552 0.968405 TGGAAACGGTAGTACGCCTT 59.032 50.000 7.69 0.00 37.37 4.35
309 553 1.344114 TGGAAACGGTAGTACGCCTTT 59.656 47.619 7.69 2.57 37.37 3.11
310 554 2.224257 TGGAAACGGTAGTACGCCTTTT 60.224 45.455 11.64 11.64 37.37 2.27
311 555 3.006323 TGGAAACGGTAGTACGCCTTTTA 59.994 43.478 11.75 0.00 37.37 1.52
312 556 4.183865 GGAAACGGTAGTACGCCTTTTAT 58.816 43.478 11.75 0.00 37.37 1.40
313 557 4.033243 GGAAACGGTAGTACGCCTTTTATG 59.967 45.833 11.75 0.00 37.37 1.90
314 558 3.169355 ACGGTAGTACGCCTTTTATGG 57.831 47.619 7.69 0.00 37.37 2.74
315 559 2.760092 ACGGTAGTACGCCTTTTATGGA 59.240 45.455 7.69 0.00 37.37 3.41
316 560 3.118542 CGGTAGTACGCCTTTTATGGAC 58.881 50.000 7.69 0.00 0.00 4.02
317 561 3.118542 GGTAGTACGCCTTTTATGGACG 58.881 50.000 2.79 0.00 34.52 4.79
318 562 3.429410 GGTAGTACGCCTTTTATGGACGT 60.429 47.826 0.00 0.00 40.67 4.34
319 563 2.613691 AGTACGCCTTTTATGGACGTG 58.386 47.619 0.00 0.00 39.08 4.49
320 564 1.662122 GTACGCCTTTTATGGACGTGG 59.338 52.381 0.00 0.00 39.08 4.94
321 565 0.322322 ACGCCTTTTATGGACGTGGA 59.678 50.000 0.00 0.00 38.01 4.02
322 566 1.065709 ACGCCTTTTATGGACGTGGAT 60.066 47.619 0.00 0.00 38.01 3.41
323 567 1.597663 CGCCTTTTATGGACGTGGATC 59.402 52.381 0.00 0.00 0.00 3.36
324 568 1.947456 GCCTTTTATGGACGTGGATCC 59.053 52.381 4.20 4.20 39.45 3.36
325 569 2.421529 GCCTTTTATGGACGTGGATCCT 60.422 50.000 14.23 0.00 39.75 3.24
326 570 3.467803 CCTTTTATGGACGTGGATCCTC 58.532 50.000 14.23 8.71 39.75 3.71
327 571 3.134804 CCTTTTATGGACGTGGATCCTCT 59.865 47.826 14.23 0.00 39.75 3.69
328 572 3.819564 TTTATGGACGTGGATCCTCTG 57.180 47.619 14.23 8.51 39.75 3.35
329 573 2.748209 TATGGACGTGGATCCTCTGA 57.252 50.000 14.23 0.00 39.75 3.27
330 574 1.115467 ATGGACGTGGATCCTCTGAC 58.885 55.000 14.23 1.17 39.75 3.51
331 575 0.039764 TGGACGTGGATCCTCTGACT 59.960 55.000 14.23 0.00 39.75 3.41
332 576 1.187087 GGACGTGGATCCTCTGACTT 58.813 55.000 14.23 0.00 35.68 3.01
333 577 1.550976 GGACGTGGATCCTCTGACTTT 59.449 52.381 14.23 0.00 35.68 2.66
334 578 2.611518 GACGTGGATCCTCTGACTTTG 58.388 52.381 14.23 0.00 0.00 2.77
335 579 1.338200 ACGTGGATCCTCTGACTTTGC 60.338 52.381 14.23 0.00 0.00 3.68
336 580 1.338105 CGTGGATCCTCTGACTTTGCA 60.338 52.381 14.23 0.00 0.00 4.08
337 581 2.783135 GTGGATCCTCTGACTTTGCAA 58.217 47.619 14.23 0.00 0.00 4.08
338 582 3.350833 GTGGATCCTCTGACTTTGCAAT 58.649 45.455 14.23 0.00 0.00 3.56
339 583 3.376546 GTGGATCCTCTGACTTTGCAATC 59.623 47.826 14.23 0.00 0.00 2.67
340 584 2.948315 GGATCCTCTGACTTTGCAATCC 59.052 50.000 3.84 0.00 0.00 3.01
341 585 2.496899 TCCTCTGACTTTGCAATCCC 57.503 50.000 0.00 0.00 0.00 3.85
342 586 1.988107 TCCTCTGACTTTGCAATCCCT 59.012 47.619 0.00 0.00 0.00 4.20
343 587 2.089980 CCTCTGACTTTGCAATCCCTG 58.910 52.381 0.00 0.00 0.00 4.45
351 595 4.181051 GCAATCCCTGCCATACCC 57.819 61.111 0.00 0.00 46.13 3.69
352 596 1.538666 GCAATCCCTGCCATACCCT 59.461 57.895 0.00 0.00 46.13 4.34
353 597 0.825010 GCAATCCCTGCCATACCCTG 60.825 60.000 0.00 0.00 46.13 4.45
354 598 0.825010 CAATCCCTGCCATACCCTGC 60.825 60.000 0.00 0.00 0.00 4.85
355 599 2.011617 AATCCCTGCCATACCCTGCC 62.012 60.000 0.00 0.00 0.00 4.85
356 600 2.940421 ATCCCTGCCATACCCTGCCT 62.940 60.000 0.00 0.00 0.00 4.75
357 601 2.693871 CCCTGCCATACCCTGCCTT 61.694 63.158 0.00 0.00 0.00 4.35
358 602 1.307647 CCTGCCATACCCTGCCTTT 59.692 57.895 0.00 0.00 0.00 3.11
359 603 1.039233 CCTGCCATACCCTGCCTTTG 61.039 60.000 0.00 0.00 0.00 2.77
360 604 0.034186 CTGCCATACCCTGCCTTTGA 60.034 55.000 0.00 0.00 0.00 2.69
361 605 0.034186 TGCCATACCCTGCCTTTGAG 60.034 55.000 0.00 0.00 0.00 3.02
362 606 0.034089 GCCATACCCTGCCTTTGAGT 60.034 55.000 0.00 0.00 0.00 3.41
363 607 2.019156 GCCATACCCTGCCTTTGAGTC 61.019 57.143 0.00 0.00 0.00 3.36
364 608 1.281867 CCATACCCTGCCTTTGAGTCA 59.718 52.381 0.00 0.00 0.00 3.41
365 609 2.359900 CATACCCTGCCTTTGAGTCAC 58.640 52.381 0.00 0.00 0.00 3.67
366 610 1.729586 TACCCTGCCTTTGAGTCACT 58.270 50.000 0.00 0.00 0.00 3.41
367 611 0.109342 ACCCTGCCTTTGAGTCACTG 59.891 55.000 0.00 0.00 0.00 3.66
368 612 0.397941 CCCTGCCTTTGAGTCACTGA 59.602 55.000 0.00 0.00 0.00 3.41
369 613 1.517242 CCTGCCTTTGAGTCACTGAC 58.483 55.000 0.38 0.38 0.00 3.51
370 614 1.202687 CCTGCCTTTGAGTCACTGACA 60.203 52.381 11.80 0.00 34.60 3.58
371 615 2.141517 CTGCCTTTGAGTCACTGACAG 58.858 52.381 11.80 0.00 34.60 3.51
372 616 1.202687 TGCCTTTGAGTCACTGACAGG 60.203 52.381 11.80 9.87 34.60 4.00
373 617 1.202698 GCCTTTGAGTCACTGACAGGT 60.203 52.381 11.80 0.00 34.60 4.00
374 618 2.487934 CCTTTGAGTCACTGACAGGTG 58.512 52.381 11.80 3.26 38.44 4.00
375 619 2.487934 CTTTGAGTCACTGACAGGTGG 58.512 52.381 11.80 0.00 37.75 4.61
376 620 0.758734 TTGAGTCACTGACAGGTGGG 59.241 55.000 11.80 0.00 37.75 4.61
377 621 1.004440 GAGTCACTGACAGGTGGGC 60.004 63.158 11.80 0.00 37.75 5.36
378 622 2.032681 GTCACTGACAGGTGGGCC 59.967 66.667 7.51 0.00 37.75 5.80
379 623 3.249189 TCACTGACAGGTGGGCCC 61.249 66.667 17.59 17.59 37.75 5.80
380 624 4.351054 CACTGACAGGTGGGCCCC 62.351 72.222 22.27 10.91 33.95 5.80
381 625 4.918360 ACTGACAGGTGGGCCCCA 62.918 66.667 22.27 7.77 34.57 4.96
382 626 3.341629 CTGACAGGTGGGCCCCAT 61.342 66.667 22.27 5.27 35.28 4.00
383 627 3.650298 CTGACAGGTGGGCCCCATG 62.650 68.421 22.27 20.55 35.28 3.66
386 630 4.387343 CAGGTGGGCCCCATGCTT 62.387 66.667 22.27 0.00 40.92 3.91
387 631 3.604133 AGGTGGGCCCCATGCTTT 61.604 61.111 22.27 0.00 40.92 3.51
388 632 3.393106 GGTGGGCCCCATGCTTTG 61.393 66.667 22.27 0.00 40.92 2.77
389 633 2.604382 GTGGGCCCCATGCTTTGT 60.604 61.111 22.27 0.00 40.92 2.83
390 634 2.604079 TGGGCCCCATGCTTTGTG 60.604 61.111 22.27 0.00 40.92 3.33
391 635 3.393106 GGGCCCCATGCTTTGTGG 61.393 66.667 12.23 0.00 40.92 4.17
396 640 3.698765 CCATGCTTTGTGGGACCC 58.301 61.111 2.45 2.45 32.98 4.46
397 641 2.342650 CCATGCTTTGTGGGACCCG 61.343 63.158 5.91 0.00 32.98 5.28
398 642 1.603455 CATGCTTTGTGGGACCCGT 60.603 57.895 5.91 0.00 0.00 5.28
399 643 1.603455 ATGCTTTGTGGGACCCGTG 60.603 57.895 5.91 0.00 0.00 4.94
400 644 2.203294 GCTTTGTGGGACCCGTGT 60.203 61.111 5.91 0.00 0.00 4.49
401 645 2.551912 GCTTTGTGGGACCCGTGTG 61.552 63.158 5.91 0.00 0.00 3.82
402 646 1.153046 CTTTGTGGGACCCGTGTGT 60.153 57.895 5.91 0.00 0.00 3.72
403 647 1.153127 TTTGTGGGACCCGTGTGTC 60.153 57.895 5.91 0.00 34.42 3.67
404 648 1.911702 TTTGTGGGACCCGTGTGTCA 61.912 55.000 5.91 0.00 36.97 3.58
405 649 2.030562 GTGGGACCCGTGTGTCAG 59.969 66.667 5.91 0.00 36.97 3.51
406 650 2.445085 TGGGACCCGTGTGTCAGT 60.445 61.111 5.91 0.00 36.97 3.41
407 651 2.030562 GGGACCCGTGTGTCAGTG 59.969 66.667 0.00 0.00 36.97 3.66
408 652 2.504274 GGGACCCGTGTGTCAGTGA 61.504 63.158 0.00 0.00 36.97 3.41
409 653 1.300697 GGACCCGTGTGTCAGTGAC 60.301 63.158 16.68 16.68 36.97 3.67
410 654 1.740285 GACCCGTGTGTCAGTGACT 59.260 57.895 23.29 1.59 35.29 3.41
411 655 0.318784 GACCCGTGTGTCAGTGACTC 60.319 60.000 23.29 19.84 35.29 3.36
412 656 1.040893 ACCCGTGTGTCAGTGACTCA 61.041 55.000 23.29 22.13 34.38 3.41
413 657 0.104120 CCCGTGTGTCAGTGACTCAA 59.896 55.000 25.22 8.92 37.70 3.02
414 658 1.472552 CCCGTGTGTCAGTGACTCAAA 60.473 52.381 25.22 3.36 37.70 2.69
415 659 1.860950 CCGTGTGTCAGTGACTCAAAG 59.139 52.381 25.22 21.07 37.70 2.77
416 660 1.860950 CGTGTGTCAGTGACTCAAAGG 59.139 52.381 25.22 15.50 37.70 3.11
417 661 2.738643 CGTGTGTCAGTGACTCAAAGGT 60.739 50.000 25.22 0.00 37.70 3.50
418 662 3.490249 CGTGTGTCAGTGACTCAAAGGTA 60.490 47.826 25.22 3.57 37.70 3.08
419 663 4.051922 GTGTGTCAGTGACTCAAAGGTAG 58.948 47.826 25.22 0.00 37.70 3.18
420 664 3.069586 TGTGTCAGTGACTCAAAGGTAGG 59.930 47.826 22.30 0.00 33.95 3.18
421 665 2.037251 TGTCAGTGACTCAAAGGTAGGC 59.963 50.000 23.29 0.00 33.15 3.93
422 666 2.300437 GTCAGTGACTCAAAGGTAGGCT 59.700 50.000 16.26 0.00 0.00 4.58
423 667 2.972713 TCAGTGACTCAAAGGTAGGCTT 59.027 45.455 0.00 0.00 0.00 4.35
424 668 3.070018 CAGTGACTCAAAGGTAGGCTTG 58.930 50.000 0.00 0.00 0.00 4.01
425 669 2.039084 AGTGACTCAAAGGTAGGCTTGG 59.961 50.000 0.00 0.00 0.00 3.61
426 670 1.271379 TGACTCAAAGGTAGGCTTGGC 60.271 52.381 0.00 0.00 0.00 4.52
443 687 3.866582 CCACGGCAGGGGATCCTC 61.867 72.222 12.58 7.90 46.39 3.71
444 688 4.227134 CACGGCAGGGGATCCTCG 62.227 72.222 12.58 5.37 42.67 4.63
445 689 4.779733 ACGGCAGGGGATCCTCGT 62.780 66.667 12.58 11.06 42.67 4.18
446 690 3.917760 CGGCAGGGGATCCTCGTC 61.918 72.222 12.58 4.80 42.67 4.20
473 717 5.878116 CCTTTTATTGTCCGTTACATCTCCA 59.122 40.000 0.00 0.00 38.10 3.86
484 728 4.438336 CGTTACATCTCCAGAAGCTTCGTA 60.438 45.833 20.43 11.63 0.00 3.43
560 809 8.223769 GCCATACATATATCAGAAGAAACGTTG 58.776 37.037 0.00 0.00 0.00 4.10
624 873 7.646446 TGCGACACAAATATGTATATACACC 57.354 36.000 17.69 0.00 37.82 4.16
695 944 9.898152 AAAGATAAGGAAACCAAATGAAAACAA 57.102 25.926 0.00 0.00 0.00 2.83
735 994 8.839343 CAAAAGCAAGGATAGAAAACCAATTTT 58.161 29.630 0.00 0.00 40.83 1.82
770 1037 1.135689 CCAACGCAATAACCTGTCTGC 60.136 52.381 0.00 0.00 0.00 4.26
1130 1400 0.326264 GAGGATGCTGTGAAGGTGGT 59.674 55.000 0.00 0.00 0.00 4.16
1331 1601 1.982938 GTGAGTACCCCGCTCCACT 60.983 63.158 0.00 0.00 32.31 4.00
1447 1723 0.323451 GTTCTTGGGGCTCCGGATTT 60.323 55.000 3.57 0.00 35.24 2.17
1502 1778 2.807107 CGCCATTCCCTGATCCGGA 61.807 63.158 6.61 6.61 0.00 5.14
1544 1820 3.287312 ACATGGTTCTTGCATTGTTCG 57.713 42.857 0.00 0.00 0.00 3.95
1559 1835 0.928451 GTTCGTTGTTCTTGCGTGCC 60.928 55.000 0.00 0.00 0.00 5.01
1574 1850 2.507324 GCCTCGAGTTCTGGCGTC 60.507 66.667 12.31 0.00 37.11 5.19
1578 1854 0.803768 CTCGAGTTCTGGCGTCATGG 60.804 60.000 3.62 0.00 0.00 3.66
1874 2151 6.769822 ACTAATGCTGTAAGAGATTGGAATGG 59.230 38.462 0.00 0.00 34.07 3.16
1999 2277 9.921637 AATCACCGTTGTGTAAATATTTTCAAT 57.078 25.926 5.91 0.00 43.26 2.57
2042 2320 7.364522 TGCATGAATTCAGTAGTTGTAGTTC 57.635 36.000 14.54 0.00 0.00 3.01
2059 2337 3.925379 AGTTCTTCATATCGTGTGTGCA 58.075 40.909 0.00 0.00 0.00 4.57
2224 2502 6.373759 ACCTGATCTACCACATAGTCACATA 58.626 40.000 0.00 0.00 32.13 2.29
2375 2663 5.047566 TCTTGGAAGACACCTCATTTTGA 57.952 39.130 0.00 0.00 0.00 2.69
2376 2664 5.634118 TCTTGGAAGACACCTCATTTTGAT 58.366 37.500 0.00 0.00 0.00 2.57
2484 2774 2.532843 TGCGTACCTCCTCCTAGTTTT 58.467 47.619 0.00 0.00 0.00 2.43
2485 2775 2.901839 TGCGTACCTCCTCCTAGTTTTT 59.098 45.455 0.00 0.00 0.00 1.94
2527 2817 1.548081 TTGAGATTGGCATGTGTGGG 58.452 50.000 0.00 0.00 0.00 4.61
2542 2832 6.515862 GCATGTGTGGGTGTCAAGTAAATAAA 60.516 38.462 0.00 0.00 0.00 1.40
2547 2837 7.977293 GTGTGGGTGTCAAGTAAATAAAAGTTT 59.023 33.333 0.00 0.00 0.00 2.66
2551 2841 9.758651 GGGTGTCAAGTAAATAAAAGTTTCAAT 57.241 29.630 0.00 0.00 0.00 2.57
2615 2906 3.293311 AACATGCACATCTTGTTGCTC 57.707 42.857 1.92 0.00 40.30 4.26
2628 2919 3.837213 TGTTGCTCTGCTTAAATCTGC 57.163 42.857 0.00 0.00 0.00 4.26
2641 2932 6.051717 GCTTAAATCTGCAGGATACAAGAGA 58.948 40.000 15.13 0.00 41.41 3.10
2642 2933 6.202570 GCTTAAATCTGCAGGATACAAGAGAG 59.797 42.308 15.13 1.03 41.41 3.20
2645 2936 6.992664 AATCTGCAGGATACAAGAGAGTAT 57.007 37.500 15.13 0.00 37.40 2.12
2763 3054 6.947733 TGGGGAATTTTATGCTATATGGTCAG 59.052 38.462 0.00 0.00 0.00 3.51
2765 3056 6.948309 GGGAATTTTATGCTATATGGTCAGGT 59.052 38.462 0.00 0.00 0.00 4.00
2788 3091 5.788055 TTTCATTCATTTGCATGCATGAC 57.212 34.783 30.64 20.41 41.18 3.06
2876 3179 3.305403 GCTGCAGTTTCTTTACCCCTTTC 60.305 47.826 16.64 0.00 0.00 2.62
2891 3194 3.193479 CCCCTTTCTAATGAAGCACCAAC 59.807 47.826 0.00 0.00 33.28 3.77
2903 3206 1.665679 AGCACCAACGCTATGAAATCG 59.334 47.619 0.00 0.00 41.55 3.34
2914 3217 4.268644 CGCTATGAAATCGACACATCTTGT 59.731 41.667 0.00 0.00 43.10 3.16
3036 3339 0.745845 AAATTGATCTCGGCTGCGCT 60.746 50.000 9.73 0.00 0.00 5.92
3105 3408 3.997021 GTGGGAGACACTGTATGAAGTTG 59.003 47.826 0.00 0.00 46.72 3.16
3154 3457 9.522804 TTGCTTTATCAAATGTTCTTTTACGTT 57.477 25.926 0.00 0.00 0.00 3.99
3182 3485 9.448438 TTTAGTGTCATAATACATGTTTGCTCT 57.552 29.630 2.30 3.75 0.00 4.09
3183 3486 7.312657 AGTGTCATAATACATGTTTGCTCTG 57.687 36.000 2.30 0.00 0.00 3.35
3337 3649 6.015027 AGGTAGTCAATAGCAGTATAAGCG 57.985 41.667 0.00 0.00 37.01 4.68
3339 3651 5.629849 GGTAGTCAATAGCAGTATAAGCGTG 59.370 44.000 0.00 0.00 37.01 5.34
3341 3653 4.341235 AGTCAATAGCAGTATAAGCGTGGA 59.659 41.667 0.00 0.00 37.01 4.02
3342 3654 5.047847 GTCAATAGCAGTATAAGCGTGGAA 58.952 41.667 0.00 0.00 37.01 3.53
3354 3666 9.391006 AGTATAAGCGTGGAAAATCAGAAAATA 57.609 29.630 0.00 0.00 0.00 1.40
3362 3674 8.131100 CGTGGAAAATCAGAAAATATGCAGTAT 58.869 33.333 0.00 0.00 0.00 2.12
3466 3784 4.826733 TGAACTGTACATCTGCAATTTGGT 59.173 37.500 0.00 0.00 0.00 3.67
3473 3791 5.633830 ACATCTGCAATTTGGTGAACTAG 57.366 39.130 0.00 0.00 0.00 2.57
3478 3796 5.181245 TCTGCAATTTGGTGAACTAGCTTAC 59.819 40.000 0.00 0.00 0.00 2.34
3514 3832 6.651975 ATATACTTCCGTCTAAGGTTCCTG 57.348 41.667 0.00 0.00 0.00 3.86
3636 3955 5.063180 TCTGGCAGCATTTATGTTTTCAG 57.937 39.130 10.34 0.00 0.00 3.02
3726 4045 9.017509 AGATCTTTTCTCAAGCATTTGTTCATA 57.982 29.630 0.00 0.00 35.73 2.15
3760 4079 8.820933 CCATTTATATTGATCTGTATACTGGCG 58.179 37.037 9.59 0.00 0.00 5.69
3800 4119 6.837992 TGTAGTAATGAATTGCTTTTCGTCC 58.162 36.000 0.00 0.00 34.54 4.79
3817 4136 4.491676 TCGTCCAAAATACTAGTGCTGTC 58.508 43.478 5.39 0.00 0.00 3.51
3842 4161 8.203485 TCTGCATAGTTTGTTTTTCTGGATTTT 58.797 29.630 0.00 0.00 0.00 1.82
3914 4233 7.774157 GGGATCTATGAGACCGAGTATGTAATA 59.226 40.741 0.00 0.00 0.00 0.98
3922 4241 8.573885 TGAGACCGAGTATGTAATATTTACTGG 58.426 37.037 3.54 7.46 0.00 4.00
3939 4258 7.457024 TTTACTGGCTTTAAATTGAGTACCC 57.543 36.000 0.00 0.00 0.00 3.69
3999 4318 3.181329 TGTAGCTCTTCTGAATTGGGGA 58.819 45.455 0.00 0.00 0.00 4.81
4063 4382 8.849168 TGTGCTTTTTCTTCTATTCATTTCTGA 58.151 29.630 0.00 0.00 0.00 3.27
4081 4400 7.823745 TTTCTGATATCTTGATTTTAGGGCC 57.176 36.000 3.98 0.00 0.00 5.80
4140 4459 8.574251 TTCCCATTGAAAAGAAATAAGATCGA 57.426 30.769 0.00 0.00 0.00 3.59
4149 4468 9.657121 GAAAAGAAATAAGATCGATGCTAAAGG 57.343 33.333 0.54 0.00 0.00 3.11
4273 4592 0.824759 CCGTTACTAGGAAGGCTGCT 59.175 55.000 1.59 0.00 0.00 4.24
4402 4721 4.578928 GTGCCTCAAACAAGAAGAAAGGTA 59.421 41.667 0.00 0.00 0.00 3.08
4403 4722 5.067283 GTGCCTCAAACAAGAAGAAAGGTAA 59.933 40.000 0.00 0.00 0.00 2.85
4404 4723 5.067283 TGCCTCAAACAAGAAGAAAGGTAAC 59.933 40.000 0.00 0.00 0.00 2.50
4405 4724 5.067283 GCCTCAAACAAGAAGAAAGGTAACA 59.933 40.000 0.00 0.00 41.41 2.41
4481 4801 7.954788 TTTCTTACTTTGCTGTTGTGTTTTT 57.045 28.000 0.00 0.00 0.00 1.94
4501 4821 8.240682 TGTTTTTGCATGAGCTACGTATATTTT 58.759 29.630 0.00 0.00 42.74 1.82
4528 4848 5.298347 CATCATGTCATCAGTAGCAGTGAT 58.702 41.667 0.00 0.00 38.74 3.06
4529 4849 5.349061 TCATGTCATCAGTAGCAGTGATT 57.651 39.130 0.00 0.00 36.18 2.57
4530 4850 5.737860 TCATGTCATCAGTAGCAGTGATTT 58.262 37.500 0.00 0.00 36.18 2.17
4531 4851 5.583457 TCATGTCATCAGTAGCAGTGATTTG 59.417 40.000 0.00 0.00 36.18 2.32
4532 4852 5.151297 TGTCATCAGTAGCAGTGATTTGA 57.849 39.130 0.00 0.00 36.18 2.69
4533 4853 4.931601 TGTCATCAGTAGCAGTGATTTGAC 59.068 41.667 14.39 14.39 36.18 3.18
4534 4854 4.032217 GTCATCAGTAGCAGTGATTTGACG 59.968 45.833 0.00 0.00 36.18 4.35
4658 4985 7.147620 TGGAAACCTCTAAACTGTCTTGTAGAA 60.148 37.037 0.00 0.00 0.00 2.10
4700 5027 3.594134 CTTCAGGTCAAGTCCATCTGTC 58.406 50.000 0.00 0.00 0.00 3.51
4755 5082 4.453819 GTGAACATGCTAGCAAAGAGAAGT 59.546 41.667 23.54 8.83 0.00 3.01
4951 5278 3.589988 CCTCGTTTGAGCAGTAAGTCAT 58.410 45.455 0.00 0.00 41.13 3.06
5003 5330 5.940470 AGTGAAAACATCATCTTAGGTGTCC 59.060 40.000 0.00 0.00 40.97 4.02
5051 5378 7.818930 TGTCATTCAAATATTTTCAGGAAAGGC 59.181 33.333 0.00 0.00 0.00 4.35
5052 5379 7.278646 GTCATTCAAATATTTTCAGGAAAGGCC 59.721 37.037 0.00 0.00 0.00 5.19
5081 5408 1.452108 GCCACAGATACCTGCCCAC 60.452 63.158 0.00 0.00 44.16 4.61
5145 5472 7.387122 GCTGCAGATGATCTTATCTATCACAAA 59.613 37.037 20.43 0.00 36.24 2.83
5146 5473 9.438228 CTGCAGATGATCTTATCTATCACAAAT 57.562 33.333 8.42 0.00 36.24 2.32
5147 5474 9.788889 TGCAGATGATCTTATCTATCACAAATT 57.211 29.630 0.00 0.00 36.24 1.82
5181 5508 7.817418 TCTTTATACCCACATTTTAGATGGC 57.183 36.000 0.00 0.00 31.66 4.40
5183 5510 8.058847 TCTTTATACCCACATTTTAGATGGCTT 58.941 33.333 0.00 0.00 31.66 4.35
5204 5531 4.098914 TCTCTTGGCACTTGGTTATTGT 57.901 40.909 0.00 0.00 0.00 2.71
5205 5532 3.820467 TCTCTTGGCACTTGGTTATTGTG 59.180 43.478 0.00 0.00 35.08 3.33
5218 5545 9.066892 ACTTGGTTATTGTGCTTATATGGTATG 57.933 33.333 0.00 0.00 0.00 2.39
5316 5643 4.772624 GTCCAGAGATACTATGCCATGGTA 59.227 45.833 14.67 9.89 0.00 3.25
5449 5780 5.468409 GGATTTTGTCTAGCTCATAGAAGGC 59.532 44.000 0.00 0.00 42.23 4.35
5454 5786 0.030773 TAGCTCATAGAAGGCGCACG 59.969 55.000 10.83 0.00 0.00 5.34
5474 5806 2.355716 CGTGGAAGGGGCTTAGATTTGA 60.356 50.000 0.00 0.00 0.00 2.69
5552 5884 5.853282 CAGTTGTCACAACTTATAAGCTTGC 59.147 40.000 21.04 5.18 0.00 4.01
5573 5905 3.304726 GCTAAGTTGTTCTTTGCCACCTC 60.305 47.826 3.48 0.00 44.67 3.85
5589 5921 3.772025 CCACCTCCTGATCACTTTAGTCT 59.228 47.826 0.00 0.00 0.00 3.24
5604 5938 6.632834 CACTTTAGTCTGTTTGTACAATGTGC 59.367 38.462 9.56 0.00 32.92 4.57
5649 5983 6.998074 TCAAGTGAGCTTCAAAATTTCTCCTA 59.002 34.615 0.00 0.00 31.49 2.94
5759 6093 0.882927 TTGTAGGTGCGGTCACTTGC 60.883 55.000 3.32 0.83 42.72 4.01
5799 6133 9.838975 CAATCAGCAGTTGTTTATGTTATGTTA 57.161 29.630 0.00 0.00 0.00 2.41
5840 6174 2.246993 TTTCGGTTGCGGCTAATGCG 62.247 55.000 0.00 0.00 40.82 4.73
6263 6597 7.871853 AGAACACACATTATTGTAAAGTGGAC 58.128 34.615 9.12 5.30 33.69 4.02
6265 6599 7.817418 ACACACATTATTGTAAAGTGGACTT 57.183 32.000 9.12 0.00 33.69 3.01
6269 6603 7.663905 ACACATTATTGTAAAGTGGACTTAGCA 59.336 33.333 9.12 0.00 32.43 3.49
6352 6692 7.611467 TGATGTTTACCAGCATTTCTTATCACT 59.389 33.333 0.00 0.00 33.74 3.41
6363 6703 6.404074 GCATTTCTTATCACTTTACTGCTGCT 60.404 38.462 0.00 0.00 0.00 4.24
6364 6704 7.201644 GCATTTCTTATCACTTTACTGCTGCTA 60.202 37.037 0.00 0.00 0.00 3.49
6487 6830 5.128663 GCAATCAATAAACCCCATACAACCT 59.871 40.000 0.00 0.00 0.00 3.50
6559 6902 2.439883 ACGTCGGTAGGCTCCTCC 60.440 66.667 0.00 0.00 0.00 4.30
6684 7031 0.974383 TGGGAAGAGGTCCTCGAAAC 59.026 55.000 13.41 6.50 46.92 2.78
6685 7032 0.249676 GGGAAGAGGTCCTCGAAACC 59.750 60.000 13.41 13.85 46.92 3.27
6686 7033 0.249676 GGAAGAGGTCCTCGAAACCC 59.750 60.000 13.41 7.60 43.98 4.11
6689 7036 1.430992 AGAGGTCCTCGAAACCCAAA 58.569 50.000 13.41 0.00 37.52 3.28
6690 7037 1.348036 AGAGGTCCTCGAAACCCAAAG 59.652 52.381 13.41 0.00 37.52 2.77
6691 7038 1.346722 GAGGTCCTCGAAACCCAAAGA 59.653 52.381 2.28 0.00 37.52 2.52
6692 7039 1.985895 AGGTCCTCGAAACCCAAAGAT 59.014 47.619 11.95 0.00 37.52 2.40
6693 7040 3.178865 AGGTCCTCGAAACCCAAAGATA 58.821 45.455 11.95 0.00 37.52 1.98
6694 7041 3.055312 AGGTCCTCGAAACCCAAAGATAC 60.055 47.826 11.95 0.00 37.52 2.24
6699 7046 4.324267 CTCGAAACCCAAAGATACAAGGT 58.676 43.478 0.00 0.00 0.00 3.50
6883 7236 5.508200 TGTTGTTCTAAACTTGGCGAAAT 57.492 34.783 0.00 0.00 0.00 2.17
6885 7238 5.974751 TGTTGTTCTAAACTTGGCGAAATTC 59.025 36.000 0.00 0.00 0.00 2.17
6908 7261 5.070446 TCGACTTATGTTGAGGCTGGATAAT 59.930 40.000 0.00 0.00 33.04 1.28
6966 7319 2.974698 GTTGCAGTGCTCGGCTGT 60.975 61.111 17.60 0.00 36.42 4.40
6985 7338 2.159310 TGTTTCGTGGGCTGAAAGTTTG 60.159 45.455 0.00 0.00 36.10 2.93
7132 7485 8.143835 GGAATCAGAAACCAAAGAAATTTGAGA 58.856 33.333 0.00 0.00 33.95 3.27
7133 7486 9.533253 GAATCAGAAACCAAAGAAATTTGAGAA 57.467 29.630 0.00 0.00 33.95 2.87
7134 7487 9.538508 AATCAGAAACCAAAGAAATTTGAGAAG 57.461 29.630 0.00 0.00 33.95 2.85
7137 7490 6.758416 AGAAACCAAAGAAATTTGAGAAGTGC 59.242 34.615 0.00 0.00 33.95 4.40
7139 7492 5.594926 ACCAAAGAAATTTGAGAAGTGCTG 58.405 37.500 0.00 0.00 33.95 4.41
7141 7494 6.044682 CCAAAGAAATTTGAGAAGTGCTGTT 58.955 36.000 0.00 0.00 33.95 3.16
7146 7512 2.627515 TTGAGAAGTGCTGTTCTGCT 57.372 45.000 5.93 0.00 36.89 4.24
7251 7619 7.755822 TGTTTTACTAACATGCAAAGTTTCGTT 59.244 29.630 12.35 1.03 0.00 3.85
7295 7663 6.986231 AGGCTTGGACAGAAAAACAAAATTAG 59.014 34.615 0.00 0.00 0.00 1.73
7300 7668 6.474102 TGGACAGAAAAACAAAATTAGCGTTC 59.526 34.615 0.00 0.00 0.00 3.95
7312 7680 5.699097 AATTAGCGTTCCAAAGTGCTTTA 57.301 34.783 0.00 0.00 38.82 1.85
7345 7714 4.438148 CCTTTTGGGAACATCGTTTTGTT 58.562 39.130 1.78 1.78 42.37 2.83
7354 7723 3.855858 ACATCGTTTTGTTGTTTTGCCT 58.144 36.364 0.00 0.00 0.00 4.75
7365 7734 3.569194 TGTTTTGCCTAGACCTTCACA 57.431 42.857 0.00 0.00 0.00 3.58
7370 7739 3.788227 TGCCTAGACCTTCACAAATGT 57.212 42.857 0.00 0.00 0.00 2.71
7413 7783 6.577103 TGCATCTTGGTAAAACATTCAACAA 58.423 32.000 0.00 0.00 0.00 2.83
7432 7802 8.818141 TCAACAATGTTTGTCTACAAAAACAA 57.182 26.923 9.72 0.00 46.22 2.83
7478 7848 2.008242 ATTGTTTGCCCTAGGTGCAA 57.992 45.000 25.11 25.11 46.30 4.08
7539 7910 5.699097 TTGCTACCCTTTTGTGAACATAC 57.301 39.130 0.00 0.00 0.00 2.39
7544 7915 5.177725 ACCCTTTTGTGAACATACGAAAC 57.822 39.130 0.00 0.00 32.15 2.78
7548 7919 7.094933 ACCCTTTTGTGAACATACGAAACTATC 60.095 37.037 0.00 0.00 32.15 2.08
7566 7937 4.870426 ACTATCGAATGCTGTTAGTGTTGG 59.130 41.667 0.00 0.00 0.00 3.77
7571 7942 4.546570 GAATGCTGTTAGTGTTGGGAAAC 58.453 43.478 0.00 0.00 0.00 2.78
7584 7955 4.507388 TGTTGGGAAACGTAGTAGAAAACG 59.493 41.667 0.00 0.00 45.00 3.60
7588 7959 5.234116 TGGGAAACGTAGTAGAAAACGAAAC 59.766 40.000 1.45 0.00 45.00 2.78
7596 7968 7.580165 ACGTAGTAGAAAACGAAACAAAAATCG 59.420 33.333 1.45 0.00 41.94 3.34
7603 7975 3.143728 ACGAAACAAAAATCGCCCTACT 58.856 40.909 0.00 0.00 42.61 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
171 413 3.969981 CCTTCGTTTTGACGCGTAAAAAT 59.030 39.130 31.46 0.36 0.00 1.82
181 423 5.801350 TCATGATGATCCTTCGTTTTGAC 57.199 39.130 0.00 0.00 0.00 3.18
185 427 5.413833 GGCATATCATGATGATCCTTCGTTT 59.586 40.000 18.72 0.00 38.26 3.60
186 428 4.940046 GGCATATCATGATGATCCTTCGTT 59.060 41.667 18.72 0.00 38.26 3.85
187 429 4.511527 GGCATATCATGATGATCCTTCGT 58.488 43.478 18.72 0.00 38.26 3.85
232 474 2.401583 TGCTGTCATTGATAACCGCT 57.598 45.000 0.00 0.00 0.00 5.52
242 484 4.763793 AGATAGTTGTTGCTTGCTGTCATT 59.236 37.500 0.00 0.00 0.00 2.57
266 508 6.239008 CCACTGTTGTCACAAAAATAGATGGT 60.239 38.462 0.00 0.00 30.36 3.55
278 522 1.339247 ACCGTTTCCACTGTTGTCACA 60.339 47.619 0.00 0.00 0.00 3.58
279 523 1.375551 ACCGTTTCCACTGTTGTCAC 58.624 50.000 0.00 0.00 0.00 3.67
298 542 3.429272 CCACGTCCATAAAAGGCGTACTA 60.429 47.826 0.00 0.00 38.63 1.82
303 547 1.597663 GATCCACGTCCATAAAAGGCG 59.402 52.381 0.00 0.00 35.37 5.52
304 548 1.947456 GGATCCACGTCCATAAAAGGC 59.053 52.381 6.95 0.00 38.20 4.35
305 549 3.134804 AGAGGATCCACGTCCATAAAAGG 59.865 47.826 15.82 0.00 40.90 3.11
306 550 4.122776 CAGAGGATCCACGTCCATAAAAG 58.877 47.826 15.82 0.00 40.90 2.27
307 551 3.772572 TCAGAGGATCCACGTCCATAAAA 59.227 43.478 15.82 0.00 40.90 1.52
308 552 3.132289 GTCAGAGGATCCACGTCCATAAA 59.868 47.826 15.82 0.00 40.90 1.40
309 553 2.693591 GTCAGAGGATCCACGTCCATAA 59.306 50.000 15.82 0.00 40.90 1.90
310 554 2.091830 AGTCAGAGGATCCACGTCCATA 60.092 50.000 15.82 0.00 40.90 2.74
311 555 1.115467 GTCAGAGGATCCACGTCCAT 58.885 55.000 15.82 0.00 40.90 3.41
312 556 0.039764 AGTCAGAGGATCCACGTCCA 59.960 55.000 15.82 0.00 40.90 4.02
313 557 1.187087 AAGTCAGAGGATCCACGTCC 58.813 55.000 15.82 0.79 38.62 4.79
314 558 2.611518 CAAAGTCAGAGGATCCACGTC 58.388 52.381 15.82 2.55 33.66 4.34
315 559 1.338200 GCAAAGTCAGAGGATCCACGT 60.338 52.381 15.82 0.00 33.66 4.49
316 560 1.338105 TGCAAAGTCAGAGGATCCACG 60.338 52.381 15.82 4.66 33.66 4.94
317 561 2.479566 TGCAAAGTCAGAGGATCCAC 57.520 50.000 15.82 8.01 33.66 4.02
318 562 3.614092 GATTGCAAAGTCAGAGGATCCA 58.386 45.455 15.82 0.00 33.66 3.41
319 563 2.948315 GGATTGCAAAGTCAGAGGATCC 59.052 50.000 1.71 2.48 33.66 3.36
320 564 2.948315 GGGATTGCAAAGTCAGAGGATC 59.052 50.000 1.71 0.00 0.00 3.36
321 565 2.579860 AGGGATTGCAAAGTCAGAGGAT 59.420 45.455 1.71 0.00 0.00 3.24
322 566 1.988107 AGGGATTGCAAAGTCAGAGGA 59.012 47.619 1.71 0.00 0.00 3.71
323 567 2.089980 CAGGGATTGCAAAGTCAGAGG 58.910 52.381 1.71 0.00 0.00 3.69
335 579 0.825010 GCAGGGTATGGCAGGGATTG 60.825 60.000 0.00 0.00 0.00 2.67
336 580 1.538666 GCAGGGTATGGCAGGGATT 59.461 57.895 0.00 0.00 0.00 3.01
337 581 3.255032 GCAGGGTATGGCAGGGAT 58.745 61.111 0.00 0.00 0.00 3.85
344 588 1.281867 TGACTCAAAGGCAGGGTATGG 59.718 52.381 0.00 0.00 0.00 2.74
345 589 2.026822 AGTGACTCAAAGGCAGGGTATG 60.027 50.000 0.00 0.00 30.96 2.39
346 590 2.026822 CAGTGACTCAAAGGCAGGGTAT 60.027 50.000 0.00 0.00 30.96 2.73
347 591 1.347707 CAGTGACTCAAAGGCAGGGTA 59.652 52.381 0.00 0.00 30.96 3.69
348 592 0.109342 CAGTGACTCAAAGGCAGGGT 59.891 55.000 0.00 0.00 30.96 4.34
349 593 0.397941 TCAGTGACTCAAAGGCAGGG 59.602 55.000 0.00 0.00 30.96 4.45
350 594 1.202687 TGTCAGTGACTCAAAGGCAGG 60.203 52.381 23.29 0.00 30.96 4.85
351 595 2.141517 CTGTCAGTGACTCAAAGGCAG 58.858 52.381 23.29 6.76 30.96 4.85
352 596 1.202687 CCTGTCAGTGACTCAAAGGCA 60.203 52.381 23.29 0.38 33.15 4.75
353 597 1.202698 ACCTGTCAGTGACTCAAAGGC 60.203 52.381 23.29 0.00 33.15 4.35
354 598 2.487934 CACCTGTCAGTGACTCAAAGG 58.512 52.381 23.29 21.72 40.34 3.11
355 599 2.487934 CCACCTGTCAGTGACTCAAAG 58.512 52.381 23.29 12.34 40.34 2.77
356 600 1.140852 CCCACCTGTCAGTGACTCAAA 59.859 52.381 23.29 2.89 40.34 2.69
357 601 0.758734 CCCACCTGTCAGTGACTCAA 59.241 55.000 23.29 3.26 40.34 3.02
358 602 1.758440 GCCCACCTGTCAGTGACTCA 61.758 60.000 23.29 4.07 40.34 3.41
359 603 1.004440 GCCCACCTGTCAGTGACTC 60.004 63.158 23.29 0.00 40.34 3.36
360 604 2.520536 GGCCCACCTGTCAGTGACT 61.521 63.158 23.29 1.01 40.34 3.41
361 605 2.032681 GGCCCACCTGTCAGTGAC 59.967 66.667 16.68 16.68 40.34 3.67
362 606 3.249189 GGGCCCACCTGTCAGTGA 61.249 66.667 19.95 0.00 40.34 3.41
363 607 4.351054 GGGGCCCACCTGTCAGTG 62.351 72.222 26.86 0.00 40.03 3.66
364 608 4.918360 TGGGGCCCACCTGTCAGT 62.918 66.667 24.76 0.00 40.03 3.41
365 609 3.341629 ATGGGGCCCACCTGTCAG 61.342 66.667 31.54 0.00 35.80 3.51
366 610 3.660571 CATGGGGCCCACCTGTCA 61.661 66.667 31.54 11.89 35.80 3.58
369 613 3.910784 AAAGCATGGGGCCCACCTG 62.911 63.158 31.54 24.79 46.50 4.00
370 614 3.604133 AAAGCATGGGGCCCACCT 61.604 61.111 31.54 24.20 46.50 4.00
371 615 3.393106 CAAAGCATGGGGCCCACC 61.393 66.667 31.54 22.16 46.50 4.61
372 616 2.604382 ACAAAGCATGGGGCCCAC 60.604 61.111 31.54 17.27 46.50 4.61
373 617 2.604079 CACAAAGCATGGGGCCCA 60.604 61.111 30.97 30.97 46.50 5.36
379 623 2.342650 CGGGTCCCACAAAGCATGG 61.343 63.158 9.12 0.00 36.94 3.66
380 624 1.603455 ACGGGTCCCACAAAGCATG 60.603 57.895 9.12 0.00 0.00 4.06
381 625 1.603455 CACGGGTCCCACAAAGCAT 60.603 57.895 9.12 0.00 0.00 3.79
382 626 2.203280 CACGGGTCCCACAAAGCA 60.203 61.111 9.12 0.00 0.00 3.91
383 627 2.203294 ACACGGGTCCCACAAAGC 60.203 61.111 9.12 0.00 0.00 3.51
384 628 1.153046 ACACACGGGTCCCACAAAG 60.153 57.895 9.12 0.00 0.00 2.77
385 629 1.153127 GACACACGGGTCCCACAAA 60.153 57.895 9.12 0.00 0.00 2.83
386 630 2.318519 CTGACACACGGGTCCCACAA 62.319 60.000 9.12 0.00 36.97 3.33
387 631 2.764547 TGACACACGGGTCCCACA 60.765 61.111 9.12 0.00 36.97 4.17
388 632 2.030562 CTGACACACGGGTCCCAC 59.969 66.667 9.12 0.00 36.97 4.61
389 633 2.445085 ACTGACACACGGGTCCCA 60.445 61.111 9.12 0.00 36.97 4.37
390 634 2.030562 CACTGACACACGGGTCCC 59.969 66.667 0.00 0.00 36.97 4.46
391 635 1.300697 GTCACTGACACACGGGTCC 60.301 63.158 4.17 0.00 36.97 4.46
392 636 0.318784 GAGTCACTGACACACGGGTC 60.319 60.000 11.80 0.00 38.29 4.46
393 637 1.040893 TGAGTCACTGACACACGGGT 61.041 55.000 11.80 0.00 34.60 5.28
394 638 0.104120 TTGAGTCACTGACACACGGG 59.896 55.000 11.80 0.00 33.37 5.28
395 639 1.860950 CTTTGAGTCACTGACACACGG 59.139 52.381 11.80 3.46 33.37 4.94
396 640 1.860950 CCTTTGAGTCACTGACACACG 59.139 52.381 11.80 5.33 33.37 4.49
397 641 2.906354 ACCTTTGAGTCACTGACACAC 58.094 47.619 11.80 3.56 33.37 3.82
398 642 3.069586 CCTACCTTTGAGTCACTGACACA 59.930 47.826 11.80 8.49 34.60 3.72
399 643 3.654414 CCTACCTTTGAGTCACTGACAC 58.346 50.000 11.80 5.84 34.60 3.67
400 644 2.037251 GCCTACCTTTGAGTCACTGACA 59.963 50.000 11.80 0.00 34.60 3.58
401 645 2.300437 AGCCTACCTTTGAGTCACTGAC 59.700 50.000 0.38 0.38 0.00 3.51
402 646 2.609747 AGCCTACCTTTGAGTCACTGA 58.390 47.619 0.00 0.00 0.00 3.41
403 647 3.070018 CAAGCCTACCTTTGAGTCACTG 58.930 50.000 0.00 0.00 0.00 3.66
404 648 2.039084 CCAAGCCTACCTTTGAGTCACT 59.961 50.000 0.00 0.00 0.00 3.41
405 649 2.427506 CCAAGCCTACCTTTGAGTCAC 58.572 52.381 0.00 0.00 0.00 3.67
406 650 1.271379 GCCAAGCCTACCTTTGAGTCA 60.271 52.381 0.00 0.00 0.00 3.41
407 651 1.454201 GCCAAGCCTACCTTTGAGTC 58.546 55.000 0.00 0.00 0.00 3.36
408 652 0.038310 GGCCAAGCCTACCTTTGAGT 59.962 55.000 0.00 0.00 46.69 3.41
409 653 2.873797 GGCCAAGCCTACCTTTGAG 58.126 57.895 0.00 0.00 46.69 3.02
426 670 3.866582 GAGGATCCCCTGCCGTGG 61.867 72.222 8.55 0.00 44.53 4.94
427 671 4.227134 CGAGGATCCCCTGCCGTG 62.227 72.222 8.55 0.00 44.53 4.94
428 672 4.779733 ACGAGGATCCCCTGCCGT 62.780 66.667 8.55 7.95 44.53 5.68
429 673 3.917760 GACGAGGATCCCCTGCCG 61.918 72.222 8.55 7.30 44.53 5.69
430 674 3.551407 GGACGAGGATCCCCTGCC 61.551 72.222 8.55 1.52 44.53 4.85
431 675 3.917760 CGGACGAGGATCCCCTGC 61.918 72.222 8.55 0.00 44.53 4.85
432 676 3.917760 GCGGACGAGGATCCCCTG 61.918 72.222 8.55 0.45 44.53 4.45
435 679 2.253403 AAAAGGCGGACGAGGATCCC 62.253 60.000 8.55 0.00 35.03 3.85
436 680 0.462789 TAAAAGGCGGACGAGGATCC 59.537 55.000 2.48 2.48 35.16 3.36
437 681 2.528041 ATAAAAGGCGGACGAGGATC 57.472 50.000 0.00 0.00 0.00 3.36
438 682 2.093128 ACAATAAAAGGCGGACGAGGAT 60.093 45.455 0.00 0.00 0.00 3.24
439 683 1.276989 ACAATAAAAGGCGGACGAGGA 59.723 47.619 0.00 0.00 0.00 3.71
440 684 1.664151 GACAATAAAAGGCGGACGAGG 59.336 52.381 0.00 0.00 0.00 4.63
441 685 1.664151 GGACAATAAAAGGCGGACGAG 59.336 52.381 0.00 0.00 0.00 4.18
442 686 1.729284 GGACAATAAAAGGCGGACGA 58.271 50.000 0.00 0.00 0.00 4.20
443 687 0.372334 CGGACAATAAAAGGCGGACG 59.628 55.000 0.00 0.00 0.00 4.79
444 688 1.445871 ACGGACAATAAAAGGCGGAC 58.554 50.000 0.00 0.00 0.00 4.79
445 689 2.188062 AACGGACAATAAAAGGCGGA 57.812 45.000 0.00 0.00 0.00 5.54
446 690 2.743126 TGTAACGGACAATAAAAGGCGG 59.257 45.455 0.00 0.00 34.15 6.13
473 717 6.816640 TGTATTATTTGCAGTACGAAGCTTCT 59.183 34.615 23.50 13.16 0.00 2.85
517 761 2.821366 CTGGATCCAGCACCGTGC 60.821 66.667 28.45 16.04 45.46 5.34
743 1009 6.655848 AGACAGGTTATTGCGTTGGTTTTATA 59.344 34.615 0.00 0.00 0.00 0.98
765 1032 0.179097 GACGGATGGAGAAGGCAGAC 60.179 60.000 0.00 0.00 0.00 3.51
770 1037 1.739338 CGGAGGACGGATGGAGAAGG 61.739 65.000 0.00 0.00 39.42 3.46
962 1232 3.580193 CTAGCGCCACATGCTGCC 61.580 66.667 2.29 0.00 43.85 4.85
1067 1337 1.279496 CTCCATCACCTCCACCTCAA 58.721 55.000 0.00 0.00 0.00 3.02
1146 1416 1.690985 CCCCCTCTTCACTCCCCTC 60.691 68.421 0.00 0.00 0.00 4.30
1331 1601 1.445410 CGCCGTACTAGTTGCAGCA 60.445 57.895 0.00 0.00 0.00 4.41
1502 1778 1.202976 GGGGATGGCAATACAGCATCT 60.203 52.381 0.00 0.00 35.83 2.90
1544 1820 1.082756 CGAGGCACGCAAGAACAAC 60.083 57.895 0.00 0.00 43.62 3.32
1559 1835 0.803768 CCATGACGCCAGAACTCGAG 60.804 60.000 11.84 11.84 0.00 4.04
1622 1898 0.938168 AACGAACACGAGGAACGAGC 60.938 55.000 0.00 0.00 45.77 5.03
1874 2151 9.862585 CAAAACAAAACAATAGGCTAAAATCAC 57.137 29.630 0.00 0.00 0.00 3.06
2033 2311 6.669977 GCACACACGATATGAAGAACTACAAC 60.670 42.308 0.00 0.00 0.00 3.32
2128 2406 7.829211 CCAAGAGATACCAATTTCACTCCTAAA 59.171 37.037 0.00 0.00 0.00 1.85
2210 2488 8.831715 TTGTAGCAATATATGTGACTATGTGG 57.168 34.615 0.00 0.00 0.00 4.17
2591 2881 4.508861 AGCAACAAGATGTGCATGTTTTTC 59.491 37.500 0.00 0.00 36.36 2.29
2628 2919 9.823647 AACATTGTAATACTCTCTTGTATCCTG 57.176 33.333 0.00 0.00 32.55 3.86
2763 3054 5.122554 TCATGCATGCAAATGAATGAAAACC 59.877 36.000 26.68 0.00 42.14 3.27
2765 3056 5.935206 AGTCATGCATGCAAATGAATGAAAA 59.065 32.000 26.68 0.00 45.44 2.29
2788 3091 6.169094 AGTGTCTGTACATCATGGAAGAAAG 58.831 40.000 0.00 0.00 38.08 2.62
2876 3179 3.871006 TCATAGCGTTGGTGCTTCATTAG 59.129 43.478 0.00 0.00 44.46 1.73
2891 3194 4.268644 ACAAGATGTGTCGATTTCATAGCG 59.731 41.667 0.00 0.00 34.38 4.26
3036 3339 7.200434 AGAATACCTAAGCTTCTCAATTGGA 57.800 36.000 0.00 0.00 0.00 3.53
3105 3408 8.321005 GCAAACAATCTAACAGAACAAAAGTTC 58.679 33.333 0.28 0.28 0.00 3.01
3203 3513 7.063426 TGCTAACAGTAATCAATCAAGAGAACG 59.937 37.037 0.00 0.00 0.00 3.95
3366 3678 9.023962 AGCTTATTCAGAAAACATGGTAATTCA 57.976 29.630 0.00 0.00 0.00 2.57
3369 3681 7.615365 TCCAGCTTATTCAGAAAACATGGTAAT 59.385 33.333 0.00 0.00 0.00 1.89
3466 3784 9.890629 ATTTCTAACATCATGTAAGCTAGTTCA 57.109 29.630 0.00 0.00 0.00 3.18
3636 3955 8.833493 AGTAACACTTAAAATGGTGTCAGTTAC 58.167 33.333 0.00 0.00 44.54 2.50
3817 4136 7.951530 AAATCCAGAAAAACAAACTATGCAG 57.048 32.000 0.00 0.00 0.00 4.41
3828 4147 8.390354 CCTCACAAAAAGAAAATCCAGAAAAAC 58.610 33.333 0.00 0.00 0.00 2.43
3883 4202 6.390048 ACTCGGTCTCATAGATCCCTATAA 57.610 41.667 0.00 0.00 33.98 0.98
3914 4233 7.148137 CGGGTACTCAATTTAAAGCCAGTAAAT 60.148 37.037 0.00 0.00 33.55 1.40
3922 4241 5.396484 GGAAACGGGTACTCAATTTAAAGC 58.604 41.667 0.00 0.00 0.00 3.51
3937 4256 1.818674 CAGGAAAATGAGGGAAACGGG 59.181 52.381 0.00 0.00 0.00 5.28
3939 4258 2.162681 AGCAGGAAAATGAGGGAAACG 58.837 47.619 0.00 0.00 0.00 3.60
4063 4382 5.940470 GTGATCGGCCCTAAAATCAAGATAT 59.060 40.000 0.00 0.00 30.45 1.63
4081 4400 5.444613 CCTCACGTCTTGTTTATTGTGATCG 60.445 44.000 0.00 0.00 35.96 3.69
4113 4432 9.807649 CGATCTTATTTCTTTTCAATGGGAAAT 57.192 29.630 0.00 0.00 44.59 2.17
4140 4459 5.675538 GTGTAACTGGAGATCCTTTAGCAT 58.324 41.667 0.00 0.00 36.82 3.79
4273 4592 1.303236 AAGGCCACGTAATGCAGCA 60.303 52.632 5.01 0.00 0.00 4.41
4481 4801 5.277297 GCACAAAATATACGTAGCTCATGCA 60.277 40.000 0.08 0.00 42.74 3.96
4501 4821 3.200483 GCTACTGATGACATGATGCACA 58.800 45.455 0.00 0.00 0.00 4.57
4528 4848 5.378292 TGCCTGCAAATAATAACGTCAAA 57.622 34.783 0.00 0.00 0.00 2.69
4529 4849 5.124617 TGATGCCTGCAAATAATAACGTCAA 59.875 36.000 0.00 0.00 0.00 3.18
4530 4850 4.637977 TGATGCCTGCAAATAATAACGTCA 59.362 37.500 0.00 0.00 0.00 4.35
4531 4851 5.168526 TGATGCCTGCAAATAATAACGTC 57.831 39.130 0.00 0.00 0.00 4.34
4532 4852 5.299028 TGATGATGCCTGCAAATAATAACGT 59.701 36.000 0.00 0.00 0.00 3.99
4533 4853 5.761003 TGATGATGCCTGCAAATAATAACG 58.239 37.500 0.00 0.00 0.00 3.18
4534 4854 8.492748 CAATTGATGATGCCTGCAAATAATAAC 58.507 33.333 0.00 0.00 0.00 1.89
4658 4985 2.543641 GACTTTGTTTTGCTTGCAGCT 58.456 42.857 9.12 0.00 42.97 4.24
4700 5027 1.688772 CATTGGGCTGATCTCCCTTG 58.311 55.000 19.76 14.64 44.23 3.61
4755 5082 4.322499 GGTTTTCCGTAGATTCTCCACAGA 60.322 45.833 0.00 0.00 0.00 3.41
4775 5102 7.503566 TCTTTCTTGTCATCTTGAAATCTGGTT 59.496 33.333 0.00 0.00 0.00 3.67
4910 5237 4.858850 AGGCAATCAATGAGAACCATACA 58.141 39.130 0.00 0.00 34.45 2.29
5003 5330 2.287194 ATCAAGGGGGAGGTGGGG 60.287 66.667 0.00 0.00 0.00 4.96
5051 5378 3.574074 CTGTGGCAAGGGTGGGAGG 62.574 68.421 0.00 0.00 0.00 4.30
5052 5379 1.856539 ATCTGTGGCAAGGGTGGGAG 61.857 60.000 0.00 0.00 0.00 4.30
5145 5472 9.920946 ATGTGGGTATAAAGAACTATTGTGAAT 57.079 29.630 0.00 0.00 0.00 2.57
5146 5473 9.747898 AATGTGGGTATAAAGAACTATTGTGAA 57.252 29.630 0.00 0.00 0.00 3.18
5147 5474 9.747898 AAATGTGGGTATAAAGAACTATTGTGA 57.252 29.630 0.00 0.00 0.00 3.58
5163 5490 5.191722 AGAGAAGCCATCTAAAATGTGGGTA 59.808 40.000 0.00 0.00 42.46 3.69
5165 5492 4.530875 AGAGAAGCCATCTAAAATGTGGG 58.469 43.478 0.00 0.00 38.96 4.61
5176 5503 1.471684 CAAGTGCCAAGAGAAGCCATC 59.528 52.381 0.00 0.00 0.00 3.51
5181 5508 4.520492 ACAATAACCAAGTGCCAAGAGAAG 59.480 41.667 0.00 0.00 0.00 2.85
5183 5510 3.820467 CACAATAACCAAGTGCCAAGAGA 59.180 43.478 0.00 0.00 0.00 3.10
5218 5545 9.294030 CAGTTTTCATGCTATTCCATTAGAAAC 57.706 33.333 0.00 0.00 38.21 2.78
5253 5580 9.920946 ATCCAAGTTATTAGCATTCTTTCCTTA 57.079 29.630 0.00 0.00 0.00 2.69
5316 5643 3.311167 TGCATGGTACCATTGCCTAAT 57.689 42.857 30.06 9.90 33.90 1.73
5323 5650 6.606796 TGAATTCATACTTGCATGGTACCATT 59.393 34.615 25.25 12.73 33.90 3.16
5449 5780 3.599285 TAAGCCCCTTCCACGTGCG 62.599 63.158 10.91 3.66 0.00 5.34
5454 5786 3.366052 TCAAATCTAAGCCCCTTCCAC 57.634 47.619 0.00 0.00 0.00 4.02
5474 5806 7.333921 GCTTAGATGTGCAGATATGCTTATCTT 59.666 37.037 25.60 15.55 41.47 2.40
5552 5884 3.253432 GGAGGTGGCAAAGAACAACTTAG 59.747 47.826 0.00 0.00 37.93 2.18
5573 5905 6.929049 TGTACAAACAGACTAAAGTGATCAGG 59.071 38.462 0.00 0.00 0.00 3.86
5589 5921 6.443934 AGTTACTTGCACATTGTACAAACA 57.556 33.333 13.23 6.17 0.00 2.83
5604 5938 3.244215 TGACTCCTCAGCCAAGTTACTTG 60.244 47.826 17.37 17.37 40.75 3.16
5735 6069 2.203877 ACCGCACCTACAAGGGGA 60.204 61.111 0.00 0.00 43.10 4.81
5830 6164 4.530094 TCATTAGAAAACGCATTAGCCG 57.470 40.909 0.00 0.00 37.52 5.52
6183 6517 5.774630 TCGTAAAACATTAAGCAAAAGGGG 58.225 37.500 0.00 0.00 0.00 4.79
6184 6518 6.443792 ACTCGTAAAACATTAAGCAAAAGGG 58.556 36.000 0.00 0.00 0.00 3.95
6185 6519 7.434013 ACAACTCGTAAAACATTAAGCAAAAGG 59.566 33.333 0.00 0.00 0.00 3.11
6186 6520 8.335256 ACAACTCGTAAAACATTAAGCAAAAG 57.665 30.769 0.00 0.00 0.00 2.27
6187 6521 7.432838 GGACAACTCGTAAAACATTAAGCAAAA 59.567 33.333 0.00 0.00 0.00 2.44
6315 6655 5.042463 TGGTAAACATCAGGTGAGTTTGA 57.958 39.130 13.37 0.00 36.29 2.69
6364 6704 9.211410 AGAATAGACTTGGATGCATAGCTATAT 57.789 33.333 5.77 0.00 0.00 0.86
6379 6719 6.929625 TCTGGACTCAAGAAGAATAGACTTG 58.070 40.000 0.00 0.00 41.27 3.16
6466 6809 5.656416 CACAGGTTGTATGGGGTTTATTGAT 59.344 40.000 0.00 0.00 0.00 2.57
6487 6830 2.356022 CCTATCCATCAGGTTGTGCACA 60.356 50.000 17.42 17.42 35.89 4.57
6559 6902 0.681733 CCATCACATACTCTCCCCCG 59.318 60.000 0.00 0.00 0.00 5.73
6684 7031 5.810095 AGAGAGAAACCTTGTATCTTTGGG 58.190 41.667 0.00 0.00 0.00 4.12
6685 7032 5.877564 GGAGAGAGAAACCTTGTATCTTTGG 59.122 44.000 0.00 0.00 0.00 3.28
6686 7033 5.877564 GGGAGAGAGAAACCTTGTATCTTTG 59.122 44.000 0.00 0.00 0.00 2.77
6689 7036 4.689062 TGGGAGAGAGAAACCTTGTATCT 58.311 43.478 0.00 0.00 0.00 1.98
6690 7037 4.468153 ACTGGGAGAGAGAAACCTTGTATC 59.532 45.833 0.00 0.00 0.00 2.24
6691 7038 4.430441 ACTGGGAGAGAGAAACCTTGTAT 58.570 43.478 0.00 0.00 0.00 2.29
6692 7039 3.833070 GACTGGGAGAGAGAAACCTTGTA 59.167 47.826 0.00 0.00 0.00 2.41
6693 7040 2.635427 GACTGGGAGAGAGAAACCTTGT 59.365 50.000 0.00 0.00 0.00 3.16
6694 7041 2.353208 CGACTGGGAGAGAGAAACCTTG 60.353 54.545 0.00 0.00 0.00 3.61
6699 7046 2.287977 TGTCGACTGGGAGAGAGAAA 57.712 50.000 17.92 0.00 0.00 2.52
6883 7236 2.565391 TCCAGCCTCAACATAAGTCGAA 59.435 45.455 0.00 0.00 0.00 3.71
6885 7238 2.672961 TCCAGCCTCAACATAAGTCG 57.327 50.000 0.00 0.00 0.00 4.18
6908 7261 4.454161 CGAAGGTTGAAACATACCATCACA 59.546 41.667 0.00 0.00 36.87 3.58
6966 7319 1.407258 CCAAACTTTCAGCCCACGAAA 59.593 47.619 0.00 0.00 0.00 3.46
7116 7469 5.127682 ACAGCACTTCTCAAATTTCTTTGGT 59.872 36.000 0.00 0.00 41.74 3.67
7132 7485 0.250640 CCAGGAGCAGAACAGCACTT 60.251 55.000 0.00 0.00 36.85 3.16
7133 7486 1.374190 CCAGGAGCAGAACAGCACT 59.626 57.895 0.00 0.00 36.85 4.40
7134 7487 0.321671 TACCAGGAGCAGAACAGCAC 59.678 55.000 0.00 0.00 36.85 4.40
7137 7490 3.265791 GTTCATACCAGGAGCAGAACAG 58.734 50.000 0.00 0.00 36.35 3.16
7139 7492 3.265791 CTGTTCATACCAGGAGCAGAAC 58.734 50.000 0.00 2.82 43.66 3.01
7141 7494 2.540383 ACTGTTCATACCAGGAGCAGA 58.460 47.619 10.87 0.00 43.66 4.26
7177 7543 9.657419 AAATCAGAAACTTTCAAAATGTGAACT 57.343 25.926 4.34 0.00 46.09 3.01
7273 7641 6.475402 ACGCTAATTTTGTTTTTCTGTCCAAG 59.525 34.615 0.00 0.00 0.00 3.61
7274 7642 6.334202 ACGCTAATTTTGTTTTTCTGTCCAA 58.666 32.000 0.00 0.00 0.00 3.53
7323 7691 4.053469 ACAAAACGATGTTCCCAAAAGG 57.947 40.909 0.00 0.00 0.00 3.11
7324 7692 4.867608 ACAACAAAACGATGTTCCCAAAAG 59.132 37.500 0.00 0.00 41.44 2.27
7338 7706 5.006153 AGGTCTAGGCAAAACAACAAAAC 57.994 39.130 0.00 0.00 0.00 2.43
7342 7711 3.630312 GTGAAGGTCTAGGCAAAACAACA 59.370 43.478 0.00 0.00 0.00 3.33
7345 7714 3.569194 TGTGAAGGTCTAGGCAAAACA 57.431 42.857 0.00 0.00 0.00 2.83
7478 7848 3.242011 AGTTTCCTCATTTGGGTGCATT 58.758 40.909 0.00 0.00 0.00 3.56
7489 7859 5.246981 TCTTGAACATGGAGTTTCCTCAT 57.753 39.130 0.00 0.00 41.51 2.90
7544 7915 4.271049 CCCAACACTAACAGCATTCGATAG 59.729 45.833 0.00 0.00 0.00 2.08
7548 7919 2.422597 TCCCAACACTAACAGCATTCG 58.577 47.619 0.00 0.00 0.00 3.34
7566 7937 6.272698 TGTTTCGTTTTCTACTACGTTTCC 57.727 37.500 0.00 0.00 38.79 3.13
7571 7942 7.406522 GCGATTTTTGTTTCGTTTTCTACTACG 60.407 37.037 0.00 0.00 37.66 3.51
7584 7955 6.431198 TGATAGTAGGGCGATTTTTGTTTC 57.569 37.500 0.00 0.00 0.00 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.